Mock Version: 1.4.13 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bionetgen.spec'], chrootPath='/var/lib/mock/829451-fedora-rawhide-x86_64-1543191808.340295/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qn5n7s8t:/etc/resolv.conf']unshare_net=TrueprintOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3c50f163f13349e298a065019b212ebd', '-D', '/var/lib/mock/829451-fedora-rawhide-x86_64-1543191808.340295/root', '-a', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qn5n7s8t:/etc/resolv.conf', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bionetgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False BUILDSTDERR: sh: /usr/bin/perl: No such file or directory BUILDSTDERR: sh: /usr/bin/perl: No such file or directory BUILDSTDERR: sh: /usr/bin/perl: No such file or directory BUILDSTDERR: sh: /usr/bin/perl: No such file or directory BUILDSTDERR: sh: /usr/bin/perl: No such file or directory Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/bionetgen-2.4.0-3.fc30.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bionetgen.spec'], chrootPath='/var/lib/mock/829451-fedora-rawhide-x86_64-1543191808.340295/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qn5n7s8t:/etc/resolv.conf']unshare_net=TrueprintOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ac77a4a0260547589d02a92893777571', '-D', '/var/lib/mock/829451-fedora-rawhide-x86_64-1543191808.340295/root', '-a', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qn5n7s8t:/etc/resolv.conf', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bionetgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.drhSWX + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bionetgen-BioNetGen-2.4.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/bionetgen-BioNetGen-2.4.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd bionetgen-BioNetGen-2.4.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/bionetgen-network-solver.patch + rm bng2/libsource/Mathutils.tar.gz bng2/libsource/cvode-2.6.0.tar.gz bng2/libsource/gsl-1.9.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz bng2/libsource/muparser_v2_2_4.zip + pushd bng2/Network3 ~/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3 ~/build/BUILD/bionetgen-BioNetGen-2.4.0 + sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' configure.ac + sed -i 's/cvode-.*//; s/muparser_.*//' configure.ac Makefile.am + sed -i -r 's/(run_network_LDADD =).*/\1 libmathutils.la -lmuparser -lsundials_nvecserial -lsundials_cvode/' src/Makefile.am + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.BQv2do + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 ~/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3 ~/build/BUILD/bionetgen-BioNetGen-2.4.0 + pushd bng2/Network3 + autoreconf -iv BUILDSTDERR: autoreconf: Entering directory `.' BUILDSTDERR: autoreconf: configure.ac: not using Gettext BUILDSTDERR: autoreconf: running: aclocal -I m4 BUILDSTDERR: aclocal: warning: couldn't open directory 'm4': No such file or directory BUILDSTDERR: autoreconf: configure.ac: tracing BUILDSTDERR: autoreconf: running: libtoolize --copy libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' BUILDSTDERR: autoreconf: running: /usr/bin/autoconf BUILDSTDERR: autoreconf: running: /usr/bin/autoheader BUILDSTDERR: autoreconf: running: automake --add-missing --copy --no-force BUILDSTDERR: configure.ac:12: installing './ar-lib' BUILDSTDERR: configure.ac:12: installing './compile' BUILDSTDERR: configure.ac:16: installing './config.guess' BUILDSTDERR: configure.ac:16: installing './config.sub' BUILDSTDERR: configure.ac:6: installing './install-sh' BUILDSTDERR: configure.ac:6: installing './missing' BUILDSTDERR: src/Makefile.am: installing './depcomp' BUILDSTDERR: autoreconf: Leaving directory `.' + . /etc/profile.d/modules.sh BUILDSTDERR: ++ '[' -z '' ']' BUILDSTDERR: ++ '[' -z /usr/share/modulefiles ']' BUILDSTDERR: ++ PS_CMD=/usr/bin/ps BUILDSTDERR: ++ '[' '!' -x /usr/bin/ps ']' BUILDSTDERR: ++ EXPR_CMD=/usr/bin/expr BUILDSTDERR: ++ '[' '!' -x /usr/bin/expr ']' BUILDSTDERR: ++ BASENAME_CMD=/usr/bin/basename BUILDSTDERR: ++ '[' '!' -x /usr/bin/basename ']' BUILDSTDERR: +++ /usr/bin/ps -p 66 -ocomm= BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/expr sh : '-*\(.*\)' BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/basename sh BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: ++ '[' -f /usr/share/lmod/lmod/init/sh ']' BUILDSTDERR: ++ . /usr/share/lmod/lmod/init/sh BUILDSTDERR: +++ LMOD_PKG=/usr/share/lmod/lmod BUILDSTDERR: +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ BUILDSTDERR: +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod BUILDSTDERR: +++ MODULESHOME=/usr/share/lmod/lmod BUILDSTDERR: +++ export LMOD_CMD BUILDSTDERR: +++ export LMOD_PKG BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: +++ export MODULESHOME BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/openmpi-x86_64 BUILDSTDERR: ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man::;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' BUILDSTDERR: ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH BUILDSTDERR: ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib BUILDSTDERR: ++ export LD_LIBRARY_PATH BUILDSTDERR: ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT_LOADEDMODULES BUILDSTDERR: ++ LOADEDMODULES=mpi/openmpi-x86_64 BUILDSTDERR: ++ export LOADEDMODULES BUILDSTDERR: ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-x86_64:1;/usr/share/lmod/lmod/share/man:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_MANPATH BUILDSTDERR: ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man:: BUILDSTDERR: ++ export MANPATH BUILDSTDERR: ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_MODULEPATH BUILDSTDERR: ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core BUILDSTDERR: ++ export MODULEPATH BUILDSTDERR: ++ MPI_BIN=/usr/lib64/openmpi/bin BUILDSTDERR: ++ export MPI_BIN BUILDSTDERR: ++ MPI_COMPILER=openmpi-x86_64 BUILDSTDERR: ++ export MPI_COMPILER BUILDSTDERR: ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi BUILDSTDERR: ++ export MPI_FORTRAN_MOD_DIR BUILDSTDERR: ++ MPI_HOME=/usr/lib64/openmpi BUILDSTDERR: ++ export MPI_HOME BUILDSTDERR: ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 BUILDSTDERR: ++ export MPI_INCLUDE BUILDSTDERR: ++ MPI_LIB=/usr/lib64/openmpi/lib BUILDSTDERR: ++ export MPI_LIB BUILDSTDERR: ++ MPI_MAN=/usr/share/man/openmpi-x86_64 BUILDSTDERR: ++ export MPI_MAN BUILDSTDERR: ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON2_SITEARCH BUILDSTDERR: ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON3_SITEARCH BUILDSTDERR: ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi BUILDSTDERR: ++ export MPI_PYTHON_SITEARCH BUILDSTDERR: ++ MPI_SUFFIX=_openmpi BUILDSTDERR: ++ export MPI_SUFFIX BUILDSTDERR: ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 BUILDSTDERR: ++ export MPI_SYSCONFIG BUILDSTDERR: ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_PATH BUILDSTDERR: ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin BUILDSTDERR: ++ export PATH BUILDSTDERR: ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH BUILDSTDERR: ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig BUILDSTDERR: ++ export PKG_CONFIG_PATH BUILDSTDERR: ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT__LMFILES_ BUILDSTDERR: ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 BUILDSTDERR: ++ export _LMFILES_ BUILDSTDERR: ++ _ModuleTable001_=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 BUILDSTDERR: ++ export _ModuleTable001_ BUILDSTDERR: ++ _ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== BUILDSTDERR: ++ export _ModuleTable002_ BUILDSTDERR: ++ _ModuleTable_Sz_=2 BUILDSTDERR: ++ export _ModuleTable_Sz_ + warnings='-Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub BUILDSTDERR: ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess BUILDSTDERR: ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for x86_64-redhat-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for x86_64-redhat-linux-gnu-ar... no checking for x86_64-redhat-linux-gnu-lib... no checking for x86_64-redhat-linux-gnu-link... no checking for ar... ar checking the archiver (ar) interface... ar checking for x86_64-redhat-linux-gnu-ar... ar checking the archiver (ar) interface... (cached) ar checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-redhat-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for x86_64-redhat-linux-gnu-g++... no checking for x86_64-redhat-linux-gnu-c++... no checking for x86_64-redhat-linux-gnu-gpp... no checking for x86_64-redhat-linux-gnu-aCC... no checking for x86_64-redhat-linux-gnu-CC... no checking for x86_64-redhat-linux-gnu-cxx... no checking for x86_64-redhat-linux-gnu-cc++... no checking for x86_64-redhat-linux-gnu-cl.exe... no checking for x86_64-redhat-linux-gnu-FCC... no checking for x86_64-redhat-linux-gnu-KCC... no checking for x86_64-redhat-linux-gnu-RCC... no checking for x86_64-redhat-linux-gnu-xlC_r... no checking for x86_64-redhat-linux-gnu-xlC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gawk... (cached) gawk checking for x86_64-redhat-linux-gnu-gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for floor... no checking for pow... no checking for rint... no checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strpbrk... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands + /usr/bin/make -O -j2 -C src make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network.o `test -f 'network.cpp' || echo './'`network.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network3.o `test -f 'network3.cpp' || echo './'`network3.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-misc.o `test -f 'util/misc.cpp' || echo './'`util/misc.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-function.o `test -f 'model/function.cpp' || echo './'`model/function.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-observable.o `test -f 'model/observable.cpp' || echo './'`model/observable.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-rateExpression.o `test -f 'model/rateExpression.cpp' || echo './'`model/rateExpression.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-run_network.o `test -f 'run_network.cpp' || echo './'`run_network.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-simpleSpecies.o `test -f 'model/simpleSpecies.cpp' || echo './'`model/simpleSpecies.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-reaction.o `test -f 'model/reaction.cpp' || echo './'`model/reaction.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateElementary.o `test -f 'model/rateExpressions/rateElementary.cpp' || echo './'`model/rateExpressions/rateElementary.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMM.o `test -f 'model/rateExpressions/rateMM.cpp' || echo './'`model/rateExpressions/rateMM.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateHill.o `test -f 'model/rateExpressions/rateHill.cpp' || echo './'`model/rateExpressions/rateHill.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMuParser.o `test -f 'model/rateExpressions/rateMuParser.cpp' || echo './'`model/rateExpressions/rateMuParser.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateSaturation.o `test -f 'model/rateExpressions/rateSaturation.cpp' || echo './'`model/rateExpressions/rateSaturation.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-elementaryRxn.o `test -f 'model/reactions/elementaryRxn.cpp' || echo './'`model/reactions/elementaryRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-bioNetGenRxn.o `test -f 'model/reactions/bioNetGenRxn.cpp' || echo './'`model/reactions/bioNetGenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-functionalRxn.o `test -f 'model/reactions/functionalRxn.cpp' || echo './'`model/reactions/functionalRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-hillRxn.o `test -f 'model/reactions/hillRxn.cpp' || echo './'`model/reactions/hillRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-michaelisMentenRxn.o `test -f 'model/reactions/michaelisMentenRxn.cpp' || echo './'`model/reactions/michaelisMentenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-saturationRxn.o `test -f 'model/reactions/saturationRxn.cpp' || echo './'`model/reactions/saturationRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-firingGenerator.o `test -f 'pla/base/firingGenerator.cpp' || echo './'`pla/base/firingGenerator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/run_network-PLA.o `test -f 'pla/PLA.cpp' || echo './'`pla/PLA.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-postleapChecker.o `test -f 'pla/base/postleapChecker.cpp' || echo './'`pla/base/postleapChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-rxnClassifier.o `test -f 'pla/base/rxnClassifier.cpp' || echo './'`pla/base/rxnClassifier.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-tauCalculator.o `test -f 'pla/base/tauCalculator.cpp' || echo './'`pla/base/tauCalculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o `test -f 'pla/eRungeKutta/util/binomialCorrector_RK.cpp' || echo './'`pla/eRungeKutta/util/binomialCorrector_RK.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-aEff_Calculator.o `test -f 'pla/eRungeKutta/util/aEff_Calculator.cpp' || echo './'`pla/eRungeKutta/util/aEff_Calculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-butcherTableau.o `test -f 'pla/eRungeKutta/util/butcherTableau.cpp' || echo './'`pla/eRungeKutta/util/butcherTableau.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_FG.o `test -f 'pla/fEuler/fEuler_FG.cpp' || echo './'`pla/fEuler/fEuler_FG.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapRB_TC.o `test -f 'pla/fEuler/fEulerPreleapRB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapRB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapSB_TC.o `test -f 'pla/fEuler/fEulerPreleapSB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapSB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_TC_PL.o `test -f 'pla/fEuler/fEulerRB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerRB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_PL.o `test -f 'pla/fEuler/fEulerRB_PL.cpp' || echo './'`pla/fEuler/fEulerRB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_RC.o `test -f 'pla/fEuler/fEuler_RC.cpp' || echo './'`pla/fEuler/fEuler_RC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_PL.o `test -f 'pla/fEuler/fEulerSB_PL.cpp' || echo './'`pla/fEuler/fEulerSB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_TC_PL.o `test -f 'pla/fEuler/fEulerSB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerSB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-negPopChecker.o `test -f 'pla/util/negPopChecker.cpp' || echo './'`pla/util/negPopChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-g_Getter.o `test -f 'pla/util/g_Getter.cpp' || echo './'`pla/util/g_Getter.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-preleap_TC.o `test -f 'pla/util/preleap_TC.cpp' || echo './'`pla/util/preleap_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-rbChecker.o `test -f 'pla/util/rbChecker.cpp' || echo './'`pla/util/rbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-sbChecker.o `test -f 'pla/util/sbChecker.cpp' || echo './'`pla/util/sbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-fixed_TC.o `test -f 'pla/util/fixed_TC.cpp' || echo './'`pla/util/fixed_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-rand.o `test -f 'util/rand.cpp' || echo './'`util/rand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/MTrand/run_network-mtrand.o `test -f 'util/MTrand/mtrand.cpp' || echo './'`util/MTrand/mtrand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/rand2/run_network-rand2.o `test -f 'util/rand2/rand2.cpp' || echo './'`util/rand2/rand2.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-conversion.o `test -f 'util/conversion.cpp' || echo './'`util/conversion.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cabs.lo util/mathutils/cabs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c -fPIC -DPIC -o util/mathutils/.libs/cabs.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c -o util/mathutils/cabs.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/cabs.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/allocate.lo util/mathutils/allocate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c -fPIC -DPIC -o util/mathutils/.libs/allocate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c -o util/mathutils/allocate.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/allocate.c: In function 'ALLOC_MATRIX': BUILDSTDERR: util/mathutils/allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: register int i,j; BUILDSTDERR: ^ BUILDSTDERR: util/mathutils/allocate.c: In function 'IALLOC_MATRIX': BUILDSTDERR: util/mathutils/allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: register int i,j; BUILDSTDERR: ^ BUILDSTDERR: util/mathutils/allocate.c: In function 'ZALLOC_MATRIX': BUILDSTDERR: util/mathutils/allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: register int i,j; BUILDSTDERR: ^ BUILDSTDERR: In file included from util/mathutils/allocate.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cadd.lo util/mathutils/cadd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c -fPIC -DPIC -o util/mathutils/.libs/cadd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c -o util/mathutils/cadd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/cadd.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cconj.lo util/mathutils/cconj.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c -fPIC -DPIC -o util/mathutils/.libs/cconj.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c -o util/mathutils/cconj.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/cconj.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cmult.lo util/mathutils/cmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c -fPIC -DPIC -o util/mathutils/.libs/cmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c -o util/mathutils/cmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/cmult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/complex_zero.lo util/mathutils/complex_zero.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c -fPIC -DPIC -o util/mathutils/.libs/complex_zero.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c -o util/mathutils/complex_zero.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/complex_zero.c:2: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/copy_vector.lo util/mathutils/copy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c -fPIC -DPIC -o util/mathutils/.libs/copy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c -o util/mathutils/copy_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/copy_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cprob.lo util/mathutils/cprob.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c -fPIC -DPIC -o util/mathutils/.libs/cprob.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c -o util/mathutils/cprob.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/cprob.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/csub.lo util/mathutils/csub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c -fPIC -DPIC -o util/mathutils/.libs/csub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c -o util/mathutils/csub.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/csub.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/dotp.lo util/mathutils/dotp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c -fPIC -DPIC -o util/mathutils/.libs/dotp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c -o util/mathutils/dotp.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/dotp.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/eigensystem.lo util/mathutils/eigensystem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c -fPIC -DPIC -o util/mathutils/.libs/eigensystem.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c -o util/mathutils/eigensystem.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/eigensystem.c:1: BUILDSTDERR: util/mathutils/eigensystem.c: In function 'SYM_EIGENSYSTEM': BUILDSTDERR: util/mathutils/eigensystem.c:27:11: warning: implicit declaration of function 'dsyev' [-Wimplicit-function-declaration] BUILDSTDERR: FNAME(dsyev)(&jobz, &uplo, &N, A[0], &N, evals, work, &lwork, &info); BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:18:20: note: in definition of macro 'FNAME' BUILDSTDERR: #define FNAME(fun) fun BUILDSTDERR: ^~~ BUILDSTDERR: util/mathutils/eigensystem.c: In function 'GEN_SYM_EIGENSYSTEM': BUILDSTDERR: util/mathutils/eigensystem.c:58:11: warning: implicit declaration of function 'dsygv' [-Wimplicit-function-declaration] BUILDSTDERR: FNAME(dsygv)(&itype, &jobz, &uplo, &N, A[0], &N, B[0], &N, evals, work, BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:18:20: note: in definition of macro 'FNAME' BUILDSTDERR: #define FNAME(fun) fun BUILDSTDERR: ^~~ BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/expi.lo util/mathutils/expi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c -fPIC -DPIC -o util/mathutils/.libs/expi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c -o util/mathutils/expi.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/expi.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c -o util/mathutils/herm_matrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/herm_matrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/gram_schmidt.lo util/mathutils/gram_schmidt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c -fPIC -DPIC -o util/mathutils/.libs/gram_schmidt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c -o util/mathutils/gram_schmidt.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/gram_schmidt.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_vector_mult.lo util/mathutils/herm_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c -o util/mathutils/herm_matrix_vector_mult.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/herm_matrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/icmult.lo util/mathutils/icmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c -fPIC -DPIC -o util/mathutils/.libs/icmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c -o util/mathutils/icmult.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/icmult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/init.lo util/mathutils/init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c -fPIC -DPIC -o util/mathutils/.libs/init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c -o util/mathutils/init.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/init.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/integration.lo util/mathutils/integration.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c -fPIC -DPIC -o util/mathutils/.libs/integration.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c -o util/mathutils/integration.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/integration.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/linsolve.lo util/mathutils/linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c -fPIC -DPIC -o util/mathutils/.libs/linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c -o util/mathutils/linsolve.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/linsolve.c: In function 'LINSOLVE': BUILDSTDERR: util/mathutils/linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: register int i,j; BUILDSTDERR: ^ BUILDSTDERR: util/mathutils/linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: register int i,j; BUILDSTDERR: ^ BUILDSTDERR: In file included from util/mathutils/linsolve.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matherr.lo util/mathutils/matherr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c -fPIC -DPIC -o util/mathutils/.libs/matherr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c -o util/mathutils/matherr.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/matherr.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_add.lo util/mathutils/matrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c -fPIC -DPIC -o util/mathutils/.libs/matrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c -o util/mathutils/matrix_add.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/matrix_add.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_elt.lo util/mathutils/matrix_elt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c -fPIC -DPIC -o util/mathutils/.libs/matrix_elt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c -o util/mathutils/matrix_elt.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/matrix_elt.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_mult.lo util/mathutils/matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c -o util/mathutils/matrix_mult.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/matrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_sub.lo util/mathutils/matrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/matrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c -o util/mathutils/matrix_sub.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/matrix_sub.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_transpose.lo util/mathutils/matrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/matrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c -o util/mathutils/matrix_transpose.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/matrix_transpose.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_vector_mult.lo util/mathutils/matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c -o util/mathutils/matrix_vector_mult.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/matrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrixexp.lo util/mathutils/matrixexp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c -fPIC -DPIC -o util/mathutils/.libs/matrixexp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c -o util/mathutils/matrixexp.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/matrixexp.c:5: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/minimum.lo util/mathutils/minimum.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c -fPIC -DPIC -o util/mathutils/.libs/minimum.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c -o util/mathutils/minimum.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/minimum.c: In function 'MIN_BRACKET': BUILDSTDERR: util/mathutils/minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable] BUILDSTDERR: double ulim,u,r,q,fu,dum; BUILDSTDERR: ^~~ BUILDSTDERR: In file included from util/mathutils/minimum.c:3: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/minimum.c: In function 'MIN_FIND': BUILDSTDERR: util/mathutils/minimum.c:117:31: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (fabs(p) >= fabs(0.5*q*etemp) || p <= q*(a-x) || p >= q*(b-x)) BUILDSTDERR: ~~~~~^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/norm.lo util/mathutils/norm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c -fPIC -DPIC -o util/mathutils/.libs/norm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c -o util/mathutils/norm.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/norm.c: In function 'NORM': BUILDSTDERR: util/mathutils/norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable] BUILDSTDERR: double norm; BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from util/mathutils/norm.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/normsq.lo util/mathutils/normsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c -fPIC -DPIC -o util/mathutils/.libs/normsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c -o util/mathutils/normsq.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/normsq.c: In function 'NORMSQ': BUILDSTDERR: util/mathutils/normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable] BUILDSTDERR: double norm; BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from util/mathutils/normsq.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/project.lo util/mathutils/project.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c -fPIC -DPIC -o util/mathutils/.libs/project.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c -o util/mathutils/project.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/project.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/random.lo util/mathutils/random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c -fPIC -DPIC -o util/mathutils/.libs/random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c -o util/mathutils/random.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/random.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rcmult.lo util/mathutils/rcmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c -fPIC -DPIC -o util/mathutils/.libs/rcmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c -o util/mathutils/rcmult.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/rcmult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rect_transpose.lo util/mathutils/rect_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c -fPIC -DPIC -o util/mathutils/.libs/rect_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c -o util/mathutils/rect_transpose.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/rect_transpose.c: In function 'RECT_TRANSPOSE': BUILDSTDERR: util/mathutils/rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable] BUILDSTDERR: double **At, *Aptr, *Atptr; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable] BUILDSTDERR: double **At, *Aptr, *Atptr; BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from util/mathutils/rect_transpose.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/roots.lo util/mathutils/roots.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c -fPIC -DPIC -o util/mathutils/.libs/roots.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c -o util/mathutils/roots.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/roots.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/roots.c: In function 'ROOT_FIND': BUILDSTDERR: util/mathutils/roots.c:69:17: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: min2=fabs(e*q); BUILDSTDERR: ~^~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/scale_vector.lo util/mathutils/scale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c -fPIC -DPIC -o util/mathutils/.libs/scale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c -o util/mathutils/scale_vector.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/scale_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/runge-kutta.lo util/mathutils/runge-kutta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c -fPIC -DPIC -o util/mathutils/.libs/runge-kutta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c -o util/mathutils/runge-kutta.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/runge-kutta.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sum_vector.lo util/mathutils/sum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c -fPIC -DPIC -o util/mathutils/.libs/sum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c -o util/mathutils/sum_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/sum_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/splines.lo util/mathutils/splines.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c -fPIC -DPIC -o util/mathutils/.libs/splines.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c -o util/mathutils/splines.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/splines.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_linsolve.lo util/mathutils/sym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c -o util/mathutils/sym_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/sym_linsolve.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c -o util/mathutils/sym_matrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/sym_matrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sym_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c -o util/mathutils/sym_matrix_vector_mult.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/sym_matrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/svd.lo util/mathutils/svd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c -fPIC -DPIC -o util/mathutils/.libs/svd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c -o util/mathutils/svd.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/svd.c:2: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sympos_linsolve.lo util/mathutils/sympos_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sympos_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c -o util/mathutils/sympos_linsolve.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/sympos_linsolve.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/test_transpose.lo util/mathutils/test_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c -fPIC -DPIC -o util/mathutils/.libs/test_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c -o util/mathutils/test_transpose.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/test_transpose.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: main() BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from util/mathutils/test_transpose.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testdummy.lo util/mathutils/testdummy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c -fPIC -DPIC -o util/mathutils/.libs/testdummy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c -o util/mathutils/testdummy.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/testdummy.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: main(){ BUILDSTDERR: ^~~~ BUILDSTDERR: util/mathutils/testdummy.c: In function 'main': BUILDSTDERR: util/mathutils/testdummy.c:5:9: warning: unused variable 'incx' [-Wunused-variable] BUILDSTDERR: int incx=1; BUILDSTDERR: ^~~~ BUILDSTDERR: util/mathutils/testdummy.c:9:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: scanf("%d", &n); BUILDSTDERR: ^~~~~~~~~~~~~~~ BUILDSTDERR: util/mathutils/testdummy.c:15:2: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: scanf("%lf", x+i); BUILDSTDERR: ^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from util/mathutils/testdummy.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testgram.lo util/mathutils/testgram.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c -fPIC -DPIC -o util/mathutils/.libs/testgram.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c -o util/mathutils/testgram.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/testgram.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: main(int argc, char *argv[]){ BUILDSTDERR: ^~~~ BUILDSTDERR: util/mathutils/testgram.c: In function 'main': BUILDSTDERR: util/mathutils/testgram.c:7:63: warning: unused variable 'V' [-Wunused-variable] BUILDSTDERR: double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: ^ BUILDSTDERR: util/mathutils/testgram.c:7:58: warning: unused variable 'w' [-Wunused-variable] BUILDSTDERR: double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: ^ BUILDSTDERR: util/mathutils/testgram.c:7:52: warning: unused variable 'UtU' [-Wunused-variable] BUILDSTDERR: double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: ^~~ BUILDSTDERR: util/mathutils/testgram.c:7:46: warning: unused variable 'Ut' [-Wunused-variable] BUILDSTDERR: double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: ^~ BUILDSTDERR: util/mathutils/testgram.c:5:7: warning: unused variable 'nr' [-Wunused-variable] BUILDSTDERR: int nr, n_run; BUILDSTDERR: ^~ BUILDSTDERR: In file included from util/mathutils/testgram.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testspline.lo util/mathutils/testspline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c -fPIC -DPIC -o util/mathutils/.libs/testspline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c -o util/mathutils/testspline.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/testspline.c:7:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: main() BUILDSTDERR: ^~~~ BUILDSTDERR: In file included from util/mathutils/testspline.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testsvd.lo util/mathutils/testsvd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c -fPIC -DPIC -o util/mathutils/.libs/testsvd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c -o util/mathutils/testsvd.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/testsvd.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: main(int argc, char *argv[]){ BUILDSTDERR: ^~~~ BUILDSTDERR: util/mathutils/testsvd.c: In function 'main': BUILDSTDERR: util/mathutils/testsvd.c:7:28: warning: unused variable 'GtG' [-Wunused-variable] BUILDSTDERR: double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: ^~~ BUILDSTDERR: util/mathutils/testsvd.c:7:22: warning: unused variable 'Gt' [-Wunused-variable] BUILDSTDERR: double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: ^~ BUILDSTDERR: util/mathutils/testsvd.c:7:17: warning: unused variable 'G' [-Wunused-variable] BUILDSTDERR: double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: ^ BUILDSTDERR: In file included from util/mathutils/testsvd.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_add.lo util/mathutils/vector_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c -fPIC -DPIC -o util/mathutils/.libs/vector_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c -o util/mathutils/vector_add.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/vector_add.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_dist.lo util/mathutils/vector_dist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c -fPIC -DPIC -o util/mathutils/.libs/vector_dist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c -o util/mathutils/vector_dist.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/vector_dist.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zcopy_vector.lo util/mathutils/zcopy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c -fPIC -DPIC -o util/mathutils/.libs/zcopy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c -o util/mathutils/zcopy_vector.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/zcopy_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotc.lo util/mathutils/zdotc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c -fPIC -DPIC -o util/mathutils/.libs/zdotc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c -o util/mathutils/zdotc.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/zdotc.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testutils.lo util/mathutils/testutils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c -fPIC -DPIC -o util/mathutils/.libs/testutils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c -o util/mathutils/testutils.o >/dev/null 2>&1 BUILDSTDERR: util/mathutils/testutils.c:6:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: main (int argc, char *argv[]) BUILDSTDERR: ^~~~ BUILDSTDERR: util/mathutils/testutils.c: In function 'main': BUILDSTDERR: util/mathutils/testutils.c:15:12: warning: unused variable 'z1' [-Wunused-variable] BUILDSTDERR: dcomplex z1; BUILDSTDERR: ^~ BUILDSTDERR: util/mathutils/testutils.c:10:7: warning: unused variable 'seed' [-Wunused-variable] BUILDSTDERR: int seed; BUILDSTDERR: ^~~~ BUILDSTDERR: util/mathutils/testutils.c:8:11: warning: unused variable 'k' [-Wunused-variable] BUILDSTDERR: int i,j,k; BUILDSTDERR: ^ BUILDSTDERR: In file included from util/mathutils/testutils.c:2: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotu.lo util/mathutils/zdotu.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c -fPIC -DPIC -o util/mathutils/.libs/zdotu.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c -o util/mathutils/zdotu.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/zdotu.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c -o util/mathutils/zmatrix_add.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/zmatrix_add.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c -o util/mathutils/zmatrix_mult.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/zmatrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c -o util/mathutils/zmatrix_sub.o >/dev/null 2>&1 BUILDSTDERR: In file included from util/mathutils/zmatrix_sub.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c -o util/mathutils/zmatrix_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/zmatrix_transpose.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_vector_mult.lo util/mathutils/zmatrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c -o util/mathutils/zmatrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/zmatrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znorm.lo util/mathutils/znorm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c -fPIC -DPIC -o util/mathutils/.libs/znorm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c -o util/mathutils/znorm.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/znorm.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znormsq.lo util/mathutils/znormsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c -fPIC -DPIC -o util/mathutils/.libs/znormsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c -o util/mathutils/znormsq.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/znormsq.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zrscale_vector.lo util/mathutils/zrscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zrscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c -o util/mathutils/zrscale_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/zrscale_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zscale_vector.lo util/mathutils/zscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c -o util/mathutils/zscale_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/zscale_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsum_vector.lo util/mathutils/zsum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c -fPIC -DPIC -o util/mathutils/.libs/zsum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c -o util/mathutils/zsum_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/zsum_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsym_linsolve.lo util/mathutils/zsym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/zsym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c -o util/mathutils/zsym_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' BUILDSTDERR: In file included from util/mathutils/zsym_linsolve.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: static double dswap; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: static int imarg1, imarg2; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: static double marg1, marg2; BUILDSTDERR: ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static int isqrarg; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: static double sqrarg; BUILDSTDERR: ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libmathutils.la util/mathutils/allocate.lo util/mathutils/cabs.lo util/mathutils/cadd.lo util/mathutils/cconj.lo util/mathutils/cmult.lo util/mathutils/complex_zero.lo util/mathutils/copy_vector.lo util/mathutils/cprob.lo util/mathutils/csub.lo util/mathutils/dotp.lo util/mathutils/eigensystem.lo util/mathutils/expi.lo util/mathutils/gram_schmidt.lo util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_vector_mult.lo util/mathutils/icmult.lo util/mathutils/init.lo util/mathutils/integration.lo util/mathutils/linsolve.lo util/mathutils/matherr.lo util/mathutils/matrix_add.lo util/mathutils/matrix_elt.lo util/mathutils/matrix_mult.lo util/mathutils/matrix_sub.lo util/mathutils/matrix_transpose.lo util/mathutils/matrix_vector_mult.lo util/mathutils/matrixexp.lo util/mathutils/minimum.lo util/mathutils/norm.lo util/mathutils/normsq.lo util/mathutils/project.lo util/mathutils/random.lo util/mathutils/rcmult.lo util/mathutils/rect_transpose.lo util/mathutils/roots.lo util/mathutils/runge-kutta.lo util/mathutils/scale_vector.lo util/mathutils/splines.lo util/mathutils/sum_vector.lo util/mathutils/svd.lo util/mathutils/sym_linsolve.lo util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sympos_linsolve.lo util/mathutils/test_transpose.lo util/mathutils/testdummy.lo util/mathutils/testgram.lo util/mathutils/testspline.lo util/mathutils/testsvd.lo util/mathutils/testutils.lo util/mathutils/vector_add.lo util/mathutils/vector_dist.lo util/mathutils/zcopy_vector.lo util/mathutils/zdotc.lo util/mathutils/zdotu.lo util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_vector_mult.lo util/mathutils/znorm.lo util/mathutils/znormsq.lo util/mathutils/zrscale_vector.lo util/mathutils/zscale_vector.lo util/mathutils/zsum_vector.lo util/mathutils/zsym_linsolve.lo libtool: link: ar cru .libs/libmathutils.a util/mathutils/.libs/allocate.o util/mathutils/.libs/cabs.o util/mathutils/.libs/cadd.o util/mathutils/.libs/cconj.o util/mathutils/.libs/cmult.o util/mathutils/.libs/complex_zero.o util/mathutils/.libs/copy_vector.o util/mathutils/.libs/cprob.o util/mathutils/.libs/csub.o util/mathutils/.libs/dotp.o util/mathutils/.libs/eigensystem.o util/mathutils/.libs/expi.o util/mathutils/.libs/gram_schmidt.o util/mathutils/.libs/herm_matrix_mult.o util/mathutils/.libs/herm_matrix_vector_mult.o util/mathutils/.libs/icmult.o util/mathutils/.libs/init.o util/mathutils/.libs/integration.o util/mathutils/.libs/linsolve.o util/mathutils/.libs/matherr.o util/mathutils/.libs/matrix_add.o util/mathutils/.libs/matrix_elt.o util/mathutils/.libs/matrix_mult.o util/mathutils/.libs/matrix_sub.o util/mathutils/.libs/matrix_transpose.o util/mathutils/.libs/matrix_vector_mult.o util/mathutils/.libs/matrixexp.o util/mathutils/.libs/minimum.o util/mathutils/.libs/norm.o util/mathutils/.libs/normsq.o util/mathutils/.libs/project.o util/mathutils/.libs/random.o util/mathutils/.libs/rcmult.o util/mathutils/.libs/rect_transpose.o util/mathutils/.libs/roots.o util/mathutils/.libs/runge-kutta.o util/mathutils/.libs/scale_vector.o util/mathutils/.libs/splines.o util/mathutils/.libs/sum_vector.o util/mathutils/.libs/svd.o util/mathutils/.libs/sym_linsolve.o util/mathutils/.libs/sym_matrix_mult.o util/mathutils/.libs/sym_matrix_vector_mult.o util/mathutils/.libs/sympos_linsolve.o util/mathutils/.libs/test_transpose.o util/mathutils/.libs/testdummy.o util/mathutils/.libs/testgram.o util/mathutils/.libs/testspline.o util/mathutils/.libs/testsvd.o util/mathutils/.libs/testutils.o util/mathutils/.libs/vector_add.o util/mathutils/.libs/vector_dist.o util/mathutils/.libs/zcopy_vector.o util/mathutils/.libs/zdotc.o util/mathutils/.libs/zdotu.o util/mathutils/.libs/zmatrix_add.o util/mathutils/.libs/zmatrix_mult.o util/mathutils/.libs/zmatrix_sub.o util/mathutils/.libs/zmatrix_transpose.o util/mathutils/.libs/zmatrix_vector_mult.o util/mathutils/.libs/znorm.o util/mathutils/.libs/znormsq.o util/mathutils/.libs/zrscale_vector.o util/mathutils/.libs/zscale_vector.o util/mathutils/.libs/zsum_vector.o util/mathutils/.libs/zsym_linsolve.o libtool: link: ranlib .libs/libmathutils.a libtool: link: ( cd ".libs" && rm -f "libmathutils.la" && ln -s "../libmathutils.la" "libmathutils.la" ) make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o libmathutils.la -lmuparser -lsundials_nvecserial -lsundials_cvode libtool: link: g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o ./.libs/libmathutils.a -lmuparser -lsundials_nvecserial -lsundials_cvode make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' + . /etc/profile.d/modules.sh BUILDSTDERR: ++ '[' -z '' ']' BUILDSTDERR: ++ '[' -z /usr/share/modulefiles ']' BUILDSTDERR: ++ PS_CMD=/usr/bin/ps BUILDSTDERR: ++ '[' '!' -x /usr/bin/ps ']' BUILDSTDERR: ++ EXPR_CMD=/usr/bin/expr BUILDSTDERR: ++ '[' '!' -x /usr/bin/expr ']' BUILDSTDERR: ++ BASENAME_CMD=/usr/bin/basename BUILDSTDERR: ++ '[' '!' -x /usr/bin/basename ']' BUILDSTDERR: +++ /usr/bin/ps -p 66 -ocomm= BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/expr sh : '-*\(.*\)' BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: +++ /usr/bin/basename sh BUILDSTDERR: ++ my_shell=sh BUILDSTDERR: ++ '[' -f /usr/share/lmod/lmod/init/sh ']' BUILDSTDERR: ++ . /usr/share/lmod/lmod/init/sh BUILDSTDERR: +++ LMOD_PKG=/usr/share/lmod/lmod BUILDSTDERR: +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ BUILDSTDERR: +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod BUILDSTDERR: +++ MODULESHOME=/usr/share/lmod/lmod BUILDSTDERR: +++ export LMOD_CMD BUILDSTDERR: +++ export LMOD_PKG BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: +++ export MODULESHOME BUILDSTDERR: +++ export LMOD_DIR BUILDSTDERR: ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module unload mpi/openmpi-x86_64 BUILDSTDERR: ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-x86_64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man::;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' BUILDSTDERR: ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH BUILDSTDERR: ++ unset LD_LIBRARY_PATH BUILDSTDERR: ++ unset __LMOD_REF_COUNT_LOADEDMODULES BUILDSTDERR: ++ unset LOADEDMODULES BUILDSTDERR: ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 BUILDSTDERR: ++ export __LMOD_REF_COUNT_MANPATH BUILDSTDERR: ++ MANPATH=/usr/share/lmod/lmod/share/man:: BUILDSTDERR: ++ export MANPATH BUILDSTDERR: ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core BUILDSTDERR: ++ export MODULEPATH BUILDSTDERR: ++ unset MPI_BIN BUILDSTDERR: ++ unset MPI_COMPILER BUILDSTDERR: ++ unset MPI_FORTRAN_MOD_DIR BUILDSTDERR: ++ unset MPI_HOME BUILDSTDERR: ++ unset MPI_INCLUDE BUILDSTDERR: ++ unset MPI_LIB BUILDSTDERR: ++ unset MPI_MAN BUILDSTDERR: ++ unset MPI_PYTHON2_SITEARCH BUILDSTDERR: ++ unset MPI_PYTHON3_SITEARCH BUILDSTDERR: ++ unset MPI_PYTHON_SITEARCH BUILDSTDERR: ++ unset MPI_SUFFIX BUILDSTDERR: ++ unset MPI_SYSCONFIG BUILDSTDERR: ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_PATH BUILDSTDERR: ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin BUILDSTDERR: ++ export PATH BUILDSTDERR: ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' BUILDSTDERR: ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH BUILDSTDERR: ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig BUILDSTDERR: ++ export PKG_CONFIG_PATH BUILDSTDERR: ++ unset __LMOD_REF_COUNT__LMFILES_ BUILDSTDERR: ++ unset _LMFILES_ BUILDSTDERR: ++ _ModuleTable001_=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 BUILDSTDERR: ++ export _ModuleTable001_ ~/build/BUILD/bionetgen-BioNetGen-2.4.0 BUILDSTDERR: ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= BUILDSTDERR: ++ export _ModuleTable002_ BUILDSTDERR: ++ _ModuleTable_Sz_=2 BUILDSTDERR: ++ export _ModuleTable_Sz_ + popd + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.RryVzV + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64 + cd bionetgen-BioNetGen-2.4.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64 'INSTALL=/usr/bin/install -p' -C bng2/Network3/src make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -p run_network '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/bin' libtool: install: /usr/bin/install -p run_network /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/bin/run_network make[1]: Nothing to be done for 'install-data-am'. make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' + mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/perl5/vendor_perl/BioNetGen mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/perl5' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/perl5/vendor_perl' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/perl5/vendor_perl/BioNetGen' + cp -r bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/perl5/vendor_perl/BioNetGen/ + cp bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/perl5/vendor_perl/BioNetGen/ + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2.4.0-3.fc30 --unique-debug-suffix -2.4.0-3.fc30.x86_64 --unique-debug-src-base bionetgen-2.4.0-3.fc30.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-BioNetGen-2.4.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/bin/run_network extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/bin/run_network /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. BUILDSTDERR: 967 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: bionetgen-2.4.0-3.fc30.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.pUD9iB + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 + DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/doc/bionetgen + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/doc/bionetgen + cp -pr README.md /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/doc/bionetgen + cp -pr bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/doc/bionetgen + cp -pr bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/doc/bionetgen + cp -pr bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/doc/bionetgen + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.XFd44g + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 + LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/licenses/bionetgen + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/licenses/bionetgen + cp -pr LICENSE /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64/usr/share/licenses/bionetgen + exit 0 Provides: bionetgen = 2.4.0-3.fc30 bionetgen(x86-64) = 2.4.0-3.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libmuparser.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_cvode.so.3()(64bit) libsundials_nvecserial.so.3()(64bit) rtld(GNU_HASH) Processing files: bionetgen-perl-2.4.0-3.fc30.noarch Provides: bionetgen-perl = 2.4.0-3.fc30 perl(Viz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings) Processing files: bionetgen-debugsource-2.4.0-3.fc30.x86_64 Provides: bionetgen-debugsource = 2.4.0-3.fc30 bionetgen-debugsource(x86-64) = 2.4.0-3.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bionetgen-debuginfo-2.4.0-3.fc30.x86_64 Provides: bionetgen-debuginfo = 2.4.0-3.fc30 bionetgen-debuginfo(x86-64) = 2.4.0-3.fc30 debuginfo(build-id) = 8c316651b8aea8db49ebca98544b156e22a750c6 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bionetgen-debugsource(x86-64) = 2.4.0-3.fc30 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64 Wrote: /builddir/build/RPMS/bionetgen-2.4.0-3.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/bionetgen-perl-2.4.0-3.fc30.noarch.rpm Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.4.0-3.fc30.x86_64.rpm Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.4.0-3.fc30.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ZB9106 + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.x86_64 + exit 0 Child return code was: 0