Warning: Permanently added '172.25.95.193' (ECDSA) to the list of known hosts. Running: unbuffer /usr/bin/mock --buildsrpm --spec /tmp/tmpd9504nhm/bionetgen.spec --sources /tmp/tmpd9504nhm --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --define %_disable_source_fetch 0 --uniqueext 1543191539.104136 -r child WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.13 starting (python version = 3.6.5)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(/tmp/tmpd9504nhm/bionetgen.spec) Config(829451-fedora-28-i386) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/829451-fedora-28-i386-1543191539.104136/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled HW Info plugin Mock Version: 1.4.13 INFO: Mock Version: 1.4.13 Start: dnf install 'Copr repository' 706 kB/s | 51 kB 00:00 fedora 79 MB/s | 55 MB 00:00 updates 55 MB/s | 24 MB 00:00 Last metadata expiration check: 0:00:00 ago on Mon 26 Nov 2018 12:19:22 AM UTC. Dependencies resolved. ================================================================================ Group Packages ================================================================================ Marking packages as installed by the group: @Buildsystem building group patch util-linux xz gcc findutils fedora-release make redhat-rpm-config sed bzip2 cpio gcc-c++ coreutils bash info shadow-utils gzip grep unzip diffutils rpm-build which tar gawk ================================================================================ Package Arch Version Repository Size ================================================================================ Installing group packages: bash i686 4.4.23-1.fc28 updates 1.6 M bzip2 i686 1.0.6-26.fc28 fedora 60 k coreutils i686 8.29-7.fc28 updates 1.3 M cpio i686 2.12-7.fc28 fedora 271 k diffutils i686 3.6-4.fc28 fedora 365 k fedora-release noarch 28-3 updates 26 k findutils i686 1:4.6.0-19.fc28 updates 536 k gawk i686 4.2.1-1.fc28 fedora 1.1 M gcc i686 8.2.1-5.fc28 updates 21 M gcc-c++ i686 8.2.1-5.fc28 updates 12 M grep i686 3.1-5.fc28 fedora 279 k gzip i686 1.9-3.fc28 fedora 165 k info i686 6.5-4.fc28 updates 203 k make i686 1:4.2.1-6.fc28 fedora 504 k patch i686 2.7.6-5.fc28 updates 151 k redhat-rpm-config noarch 109-1.fc28 updates 78 k rpm-build i686 4.14.2.1-2.fc28 updates 164 k sed i686 4.5-1.fc28 fedora 300 k shadow-utils i686 2:4.6-1.fc28 updates 1.2 M tar i686 2:1.30-3.fc28 fedora 861 k unzip i686 6.0-38.fc28 fedora 189 k util-linux i686 2.32.1-1.fc28 updates 2.5 M which i686 2.21-8.fc28 fedora 48 k xz i686 5.2.4-2.fc28 updates 153 k Installing dependencies: annobin i686 5.7-3.fc28 updates 86 k audit-libs i686 2.8.4-2.fc28 updates 119 k basesystem noarch 11-5.fc28 fedora 9.4 k binutils i686 2.29.1-23.fc28 updates 6.4 M bzip2-libs i686 1.0.6-26.fc28 fedora 47 k ca-certificates noarch 2018.2.26-1.0.fc28 updates 395 k chkconfig i686 1.10-4.fc28 fedora 189 k coreutils-common i686 8.29-7.fc28 updates 2.0 M cpp i686 8.2.1-5.fc28 updates 9.8 M cracklib i686 2.9.6-13.fc28 fedora 88 k crypto-policies noarch 20180425-5.git6ad4018.fc28 updates 40 k curl i686 7.59.0-9.fc28 updates 332 k cyrus-sasl-lib i686 2.1.27-0.2rc7.fc28 updates 119 k dwz i686 0.12-7.fc28 fedora 111 k elfutils i686 0.174-5.fc28 updates 359 k elfutils-default-yama-scope noarch 0.174-5.fc28 updates 45 k elfutils-libelf i686 0.174-5.fc28 updates 216 k elfutils-libs i686 0.174-5.fc28 updates 350 k expat i686 2.2.5-3.fc28 fedora 108 k fedora-gpg-keys noarch 28-5 updates 98 k fedora-repos noarch 28-5 updates 9.1 k file i686 5.33-9.fc28 updates 74 k file-libs i686 5.33-9.fc28 updates 547 k filesystem i686 3.8-2.fc28 fedora 1.1 M fpc-srpm-macros noarch 1.1-4.fc28 fedora 7.5 k gc i686 7.6.4-3.fc28 fedora 111 k gdb-headless i686 8.1.1-3.fc28 updates 3.9 M gdbm i686 1:1.14.1-4.fc28 fedora 124 k gdbm-libs i686 1:1.14.1-4.fc28 fedora 60 k ghc-srpm-macros noarch 1.4.2-7.fc28 fedora 8.2 k glib2 i686 2.56.3-2.fc28 updates 2.6 M glibc i686 2.27-32.fc28 updates 3.4 M glibc-all-langpacks i686 2.27-32.fc28 updates 24 M glibc-common i686 2.27-32.fc28 updates 773 k glibc-devel i686 2.27-32.fc28 updates 1.0 M glibc-headers i686 2.27-32.fc28 updates 459 k gmp i686 1:6.1.2-7.fc28 fedora 282 k gnat-srpm-macros noarch 4-5.fc28 fedora 8.8 k go-srpm-macros noarch 2-16.fc28 fedora 13 k guile i686 5:2.0.14-7.fc28 fedora 3.5 M isl i686 0.16.1-6.fc28 fedora 963 k kernel-headers i686 4.19.2-200.fc28 updates 1.2 M keyutils-libs i686 1.5.10-6.fc28 fedora 33 k krb5-libs i686 1.16.1-21.fc28 updates 899 k libacl i686 2.2.53-1.fc28 updates 35 k libarchive i686 3.3.3-1.fc28 updates 398 k libasan i686 8.2.1-5.fc28 updates 441 k libatomic i686 8.2.1-5.fc28 updates 41 k libatomic_ops i686 7.6.2-3.fc28 fedora 36 k libattr i686 2.4.48-3.fc28 updates 26 k libbabeltrace i686 1.5.4-2.fc28 fedora 220 k libblkid i686 2.32.1-1.fc28 updates 226 k libcap i686 2.25-9.fc28 fedora 55 k libcap-ng i686 0.7.9-4.fc28 updates 32 k libcom_err i686 1.44.2-0.fc28 updates 46 k libcurl i686 7.59.0-9.fc28 updates 315 k libdb i686 5.3.28-30.fc28 fedora 829 k libdb-utils i686 5.3.28-30.fc28 fedora 152 k libfdisk i686 2.32.1-1.fc28 updates 278 k libffi i686 3.1-16.fc28 fedora 34 k libgcc i686 8.2.1-5.fc28 updates 106 k libgcrypt i686 1.8.3-1.fc28 updates 438 k libgomp i686 8.2.1-5.fc28 updates 216 k libgpg-error i686 1.31-1.fc28 updates 246 k libidn2 i686 2.0.5-1.fc28 updates 88 k libipt i686 1.6.1-8.fc28 fedora 57 k libmetalink i686 0.1.3-6.fc28 fedora 33 k libmount i686 2.32.1-1.fc28 updates 244 k libmpc i686 1.0.2-9.fc28 fedora 62 k libmpx i686 8.2.1-5.fc28 updates 46 k libnghttp2 i686 1.32.1-1.fc28 updates 80 k libnsl2 i686 1.2.0-2.20180605git4a062cf.fc28 updates 59 k libpkgconf i686 1.4.2-1.fc28 fedora 36 k libpsl i686 0.20.2-2.fc28 updates 59 k libpwquality i686 1.4.0-7.fc28 fedora 102 k libselinux i686 2.8-1.fc28 updates 183 k libsemanage i686 2.8-2.fc28 updates 170 k libsepol i686 2.8-1.fc28 updates 364 k libsigsegv i686 2.11-5.fc28 fedora 29 k libsmartcols i686 2.32.1-1.fc28 updates 179 k libssh i686 0.8.5-1.fc28 updates 243 k libstdc++ i686 8.2.1-5.fc28 updates 506 k libstdc++-devel i686 8.2.1-5.fc28 updates 2.1 M libtasn1 i686 4.13-2.fc28 fedora 78 k libtirpc i686 1.0.3-3.rc2.fc28 updates 118 k libtool-ltdl i686 2.4.6-24.fc28 updates 58 k libubsan i686 8.2.1-5.fc28 updates 185 k libunistring i686 0.9.10-1.fc28 updates 428 k libutempter i686 1.1.6-14.fc28 fedora 31 k libuuid i686 2.32.1-1.fc28 updates 91 k libverto i686 0.3.0-5.fc28 fedora 24 k libxcrypt i686 4.3.4-1.fc28 updates 129 k libxcrypt-devel i686 4.3.4-1.fc28 updates 30 k libxml2 i686 2.9.8-4.fc28 updates 737 k libzstd i686 1.3.6-1.fc28 updates 251 k lua-libs i686 5.3.4-10.fc28 fedora 132 k lz4-libs i686 1.8.1.2-4.fc28 fedora 56 k mpfr i686 3.1.6-1.fc28 fedora 229 k ncurses i686 6.1-5.20180224.fc28 updates 380 k ncurses-base noarch 6.1-5.20180224.fc28 updates 80 k ncurses-libs i686 6.1-5.20180224.fc28 updates 324 k nim-srpm-macros noarch 1-1.fc28 fedora 7.6 k nspr i686 4.20.0-1.fc28 updates 150 k nss i686 3.39.0-1.0.fc28 updates 758 k nss-softokn i686 3.39.0-1.0.fc28 updates 434 k nss-softokn-freebl i686 3.39.0-1.0.fc28 updates 236 k nss-sysinit i686 3.39.0-1.0.fc28 updates 65 k nss-util i686 3.39.0-1.0.fc28 updates 93 k ocaml-srpm-macros noarch 5-2.fc27 fedora 7.8 k openblas-srpm-macros noarch 2-2.fc27 fedora 6.6 k openldap i686 2.4.46-4.fc28 updates 382 k openssl-libs i686 1:1.1.0i-1.fc28 updates 1.3 M p11-kit i686 0.23.14-1.fc28 updates 270 k p11-kit-trust i686 0.23.14-1.fc28 updates 141 k pam i686 1.3.1-1.fc28 updates 702 k pcre i686 8.42-5.fc28 updates 207 k pcre2 i686 10.32-4.fc28 updates 244 k perl-srpm-macros noarch 1-25.fc28 fedora 9.7 k pkgconf i686 1.4.2-1.fc28 fedora 37 k pkgconf-m4 noarch 1.4.2-1.fc28 fedora 16 k pkgconf-pkg-config i686 1.4.2-1.fc28 fedora 14 k popt i686 1.16-14.fc28 fedora 62 k publicsuffix-list-dafsa noarch 20180514-1.fc28 updates 55 k python-srpm-macros noarch 3-30.fc28 updates 11 k python3-libs i686 3.6.6-1.fc28 updates 7.9 M qt5-srpm-macros noarch 5.11.1-3.fc28 updates 10 k readline i686 7.0-11.fc28 updates 205 k rpm i686 4.14.2.1-2.fc28 updates 532 k rpm-build-libs i686 4.14.2.1-2.fc28 updates 147 k rpm-libs i686 4.14.2.1-2.fc28 updates 360 k rpm-plugin-selinux i686 4.14.2.1-2.fc28 updates 68 k rust-srpm-macros noarch 6-1.fc28 updates 8.4 k setup noarch 2.11.4-1.fc28 updates 177 k sqlite-libs i686 3.22.0-4.fc28 fedora 584 k systemd-libs i686 238-10.git438ac26.fc28 updates 538 k tzdata noarch 2018g-1.fc28 updates 460 k xz-libs i686 5.2.4-2.fc28 updates 97 k zip i686 3.0-21.fc28 fedora 277 k zlib i686 1.2.11-8.fc28 updates 100 k zstd i686 1.3.6-1.fc28 updates 368 k Transaction Summary ================================================================================ Install 164 Packages Total download size: 140 M Installed size: 555 M Downloading Packages: (1/164): gzip-1.9-3.fc28.i686.rpm 14 MB/s | 165 kB 00:00 (2/164): diffutils-3.6-4.fc28.i686.rpm 19 MB/s | 365 kB 00:00 (3/164): sed-4.5-1.fc28.i686.rpm 22 MB/s | 300 kB 00:00 (4/164): make-4.2.1-6.fc28.i686.rpm 20 MB/s | 504 kB 00:00 (5/164): gawk-4.2.1-1.fc28.i686.rpm 26 MB/s | 1.1 MB 00:00 (6/164): which-2.21-8.fc28.i686.rpm 5.2 MB/s | 48 kB 00:00 (7/164): grep-3.1-5.fc28.i686.rpm 16 MB/s | 279 kB 00:00 (8/164): unzip-6.0-38.fc28.i686.rpm 17 MB/s | 189 kB 00:00 (9/164): bzip2-1.0.6-26.fc28.i686.rpm 14 MB/s | 60 kB 00:00 (10/164): cpio-2.12-7.fc28.i686.rpm 19 MB/s | 271 kB 00:00 (11/164): tar-1.30-3.fc28.i686.rpm 30 MB/s | 861 kB 00:00 (12/164): shadow-utils-4.6-1.fc28.i686.rpm 17 MB/s | 1.2 MB 00:00 (13/164): util-linux-2.32.1-1.fc28.i686.rpm 26 MB/s | 2.5 MB 00:00 (14/164): redhat-rpm-config-109-1.fc28.noarch.r 14 MB/s | 78 kB 00:00 (15/164): findutils-4.6.0-19.fc28.i686.rpm 25 MB/s | 536 kB 00:00 (16/164): bash-4.4.23-1.fc28.i686.rpm 23 MB/s | 1.6 MB 00:00 (17/164): fedora-release-28-3.noarch.rpm 2.6 MB/s | 26 kB 00:00 (18/164): rpm-build-4.14.2.1-2.fc28.i686.rpm 27 MB/s | 164 kB 00:00 (19/164): patch-2.7.6-5.fc28.i686.rpm 20 MB/s | 151 kB 00:00 (20/164): info-6.5-4.fc28.i686.rpm 21 MB/s | 203 kB 00:00 (21/164): coreutils-8.29-7.fc28.i686.rpm 23 MB/s | 1.3 MB 00:00 (22/164): xz-5.2.4-2.fc28.i686.rpm 14 MB/s | 153 kB 00:00 (23/164): filesystem-3.8-2.fc28.i686.rpm 20 MB/s | 1.1 MB 00:00 (24/164): gmp-6.1.2-7.fc28.i686.rpm 15 MB/s | 282 kB 00:00 (25/164): libsigsegv-2.11-5.fc28.i686.rpm 3.6 MB/s | 29 kB 00:00 (26/164): mpfr-3.1.6-1.fc28.i686.rpm 12 MB/s | 229 kB 00:00 (27/164): gc-7.6.4-3.fc28.i686.rpm 9.8 MB/s | 111 kB 00:00 (28/164): gcc-c++-8.2.1-5.fc28.i686.rpm 29 MB/s | 12 MB 00:00 (29/164): bzip2-libs-1.0.6-26.fc28.i686.rpm 6.9 MB/s | 47 kB 00:00 (30/164): libmpc-1.0.2-9.fc28.i686.rpm 6.9 MB/s | 62 kB 00:00 (31/164): libstdc++-8.2.1-5.fc28.i686.rpm 23 MB/s | 506 kB 00:00 (32/164): libstdc++-devel-8.2.1-5.fc28.i686.rpm 27 MB/s | 2.1 MB 00:00 (33/164): guile-2.0.14-7.fc28.i686.rpm 19 MB/s | 3.5 MB 00:00 (34/164): libutempter-1.1.6-14.fc28.i686.rpm 2.0 MB/s | 31 kB 00:00 (35/164): libblkid-2.32.1-1.fc28.i686.rpm 15 MB/s | 226 kB 00:00 (36/164): libfdisk-2.32.1-1.fc28.i686.rpm 18 MB/s | 278 kB 00:00 (37/164): libmount-2.32.1-1.fc28.i686.rpm 22 MB/s | 244 kB 00:00 (38/164): libsmartcols-2.32.1-1.fc28.i686.rpm 6.4 MB/s | 179 kB 00:00 (39/164): libuuid-2.32.1-1.fc28.i686.rpm 4.3 MB/s | 91 kB 00:00 (40/164): dwz-0.12-7.fc28.i686.rpm 21 MB/s | 111 kB 00:00 (41/164): fpc-srpm-macros-1.1-4.fc28.noarch.rpm 1.4 MB/s | 7.5 kB 00:00 (42/164): ghc-srpm-macros-1.4.2-7.fc28.noarch.r 1.0 MB/s | 8.2 kB 00:00 (43/164): gnat-srpm-macros-4-5.fc28.noarch.rpm 1.2 MB/s | 8.8 kB 00:00 (44/164): go-srpm-macros-2-16.fc28.noarch.rpm 2.3 MB/s | 13 kB 00:00 (45/164): nim-srpm-macros-1-1.fc28.noarch.rpm 1.1 MB/s | 7.6 kB 00:00 (46/164): ocaml-srpm-macros-5-2.fc27.noarch.rpm 1.1 MB/s | 7.8 kB 00:00 (47/164): openblas-srpm-macros-2-2.fc27.noarch. 965 kB/s | 6.6 kB 00:00 (48/164): perl-srpm-macros-1-25.fc28.noarch.rpm 1.4 MB/s | 9.7 kB 00:00 (49/164): libcap-2.25-9.fc28.i686.rpm 5.4 MB/s | 55 kB 00:00 (50/164): zip-3.0-21.fc28.i686.rpm 15 MB/s | 277 kB 00:00 (51/164): lua-libs-5.3.4-10.fc28.i686.rpm 9.0 MB/s | 132 kB 00:00 (52/164): libdb-5.3.28-30.fc28.i686.rpm 27 MB/s | 829 kB 00:00 (53/164): pkgconf-pkg-config-1.4.2-1.fc28.i686. 1.0 MB/s | 14 kB 00:00 (54/164): popt-1.16-14.fc28.i686.rpm 8.0 MB/s | 62 kB 00:00 (55/164): gcc-8.2.1-5.fc28.i686.rpm 36 MB/s | 21 MB 00:00 (56/164): libattr-2.4.48-3.fc28.i686.rpm 325 kB/s | 26 kB 00:00 (57/164): rpm-4.14.2.1-2.fc28.i686.rpm 5.6 MB/s | 532 kB 00:00 (58/164): libgcc-8.2.1-5.fc28.i686.rpm 12 MB/s | 106 kB 00:00 (59/164): isl-0.16.1-6.fc28.i686.rpm 43 MB/s | 963 kB 00:00 (60/164): libgomp-8.2.1-5.fc28.i686.rpm 22 MB/s | 216 kB 00:00 (61/164): xz-libs-5.2.4-2.fc28.i686.rpm 11 MB/s | 97 kB 00:00 (62/164): libatomic_ops-7.6.2-3.fc28.i686.rpm 4.1 MB/s | 36 kB 00:00 (63/164): libffi-3.1-16.fc28.i686.rpm 3.1 MB/s | 34 kB 00:00 (64/164): coreutils-common-8.29-7.fc28.i686.rpm 43 MB/s | 2.0 MB 00:00 (65/164): pkgconf-1.4.2-1.fc28.i686.rpm 2.7 MB/s | 37 kB 00:00 (66/164): pkgconf-m4-1.4.2-1.fc28.noarch.rpm 4.4 MB/s | 16 kB 00:00 (67/164): libdb-utils-5.3.28-30.fc28.i686.rpm 18 MB/s | 152 kB 00:00 (68/164): libpkgconf-1.4.2-1.fc28.i686.rpm 5.1 MB/s | 36 kB 00:00 (69/164): rpm-plugin-selinux-4.14.2.1-2.fc28.i6 9.2 MB/s | 68 kB 00:00 (70/164): rpm-libs-4.14.2.1-2.fc28.i686.rpm 24 MB/s | 360 kB 00:00 (71/164): rpm-build-libs-4.14.2.1-2.fc28.i686.r 17 MB/s | 147 kB 00:00 (72/164): basesystem-11-5.fc28.noarch.rpm 1.4 MB/s | 9.4 kB 00:00 (73/164): glibc-common-2.27-32.fc28.i686.rpm 32 MB/s | 773 kB 00:00 (74/164): glibc-devel-2.27-32.fc28.i686.rpm 31 MB/s | 1.0 MB 00:00 (75/164): glibc-headers-2.27-32.fc28.i686.rpm 20 MB/s | 459 kB 00:00 (76/164): audit-libs-2.8.4-2.fc28.i686.rpm 14 MB/s | 119 kB 00:00 (77/164): libcap-ng-0.7.9-4.fc28.i686.rpm 4.5 MB/s | 32 kB 00:00 (78/164): libselinux-2.8-1.fc28.i686.rpm 19 MB/s | 183 kB 00:00 (79/164): libsepol-2.8-1.fc28.i686.rpm 26 MB/s | 364 kB 00:00 (80/164): glibc-2.27-32.fc28.i686.rpm 24 MB/s | 3.4 MB 00:00 (81/164): libxcrypt-4.3.4-1.fc28.i686.rpm 8.3 MB/s | 129 kB 00:00 (82/164): libxcrypt-devel-4.3.4-1.fc28.i686.rpm 8.6 MB/s | 30 kB 00:00 (83/164): cpp-8.2.1-5.fc28.i686.rpm 35 MB/s | 9.8 MB 00:00 (84/164): ncurses-base-6.1-5.20180224.fc28.noar 2.1 MB/s | 80 kB 00:00 (85/164): ncurses-libs-6.1-5.20180224.fc28.i686 7.5 MB/s | 324 kB 00:00 (86/164): ncurses-6.1-5.20180224.fc28.i686.rpm 41 MB/s | 380 kB 00:00 (87/164): cracklib-2.9.6-13.fc28.i686.rpm 14 MB/s | 88 kB 00:00 (88/164): libpwquality-1.4.0-7.fc28.i686.rpm 25 MB/s | 102 kB 00:00 (89/164): lz4-libs-1.8.1.2-4.fc28.i686.rpm 7.8 MB/s | 56 kB 00:00 (90/164): pam-1.3.1-1.fc28.i686.rpm 30 MB/s | 702 kB 00:00 (91/164): systemd-libs-238-10.git438ac26.fc28.i 31 MB/s | 538 kB 00:00 (92/164): zlib-1.2.11-8.fc28.i686.rpm 12 MB/s | 100 kB 00:00 (93/164): libacl-2.2.53-1.fc28.i686.rpm 12 MB/s | 35 kB 00:00 (94/164): libsemanage-2.8-2.fc28.i686.rpm 33 MB/s | 170 kB 00:00 (95/164): libgcrypt-1.8.3-1.fc28.i686.rpm 32 MB/s | 438 kB 00:00 (96/164): setup-2.11.4-1.fc28.noarch.rpm 20 MB/s | 177 kB 00:00 (97/164): elfutils-libelf-0.174-5.fc28.i686.rpm 28 MB/s | 216 kB 00:00 (98/164): elfutils-0.174-5.fc28.i686.rpm 47 MB/s | 359 kB 00:00 (99/164): elfutils-libs-0.174-5.fc28.i686.rpm 26 MB/s | 350 kB 00:00 (100/164): libzstd-1.3.6-1.fc28.i686.rpm 21 MB/s | 251 kB 00:00 (101/164): file-5.33-9.fc28.i686.rpm 11 MB/s | 74 kB 00:00 (102/164): openssl-libs-1.1.0i-1.fc28.i686.rpm 53 MB/s | 1.3 MB 00:00 (103/164): file-libs-5.33-9.fc28.i686.rpm 20 MB/s | 547 kB 00:00 (104/164): chkconfig-1.10-4.fc28.i686.rpm 22 MB/s | 189 kB 00:00 (105/164): expat-2.2.5-3.fc28.i686.rpm 15 MB/s | 108 kB 00:00 (106/164): libbabeltrace-1.5.4-2.fc28.i686.rpm 21 MB/s | 220 kB 00:00 (107/164): libipt-1.6.1-8.fc28.i686.rpm 7.2 MB/s | 57 kB 00:00 (108/164): zstd-1.3.6-1.fc28.i686.rpm 28 MB/s | 368 kB 00:00 (109/164): libarchive-3.3.3-1.fc28.i686.rpm 24 MB/s | 398 kB 00:00 (110/164): annobin-5.7-3.fc28.i686.rpm 9.7 MB/s | 86 kB 00:00 (111/164): python-srpm-macros-3-30.fc28.noarch. 1.6 MB/s | 11 kB 00:00 (112/164): qt5-srpm-macros-5.11.1-3.fc28.noarch 1.2 MB/s | 10 kB 00:00 (113/164): rust-srpm-macros-6-1.fc28.noarch.rpm 1.0 MB/s | 8.4 kB 00:00 (114/164): libnsl2-1.2.0-2.20180605git4a062cf.f 6.8 MB/s | 59 kB 00:00 (115/164): libtirpc-1.0.3-3.rc2.fc28.i686.rpm 12 MB/s | 118 kB 00:00 (116/164): binutils-2.29.1-23.fc28.i686.rpm 41 MB/s | 6.4 MB 00:00 (117/164): crypto-policies-20180425-5.git6ad401 11 MB/s | 40 kB 00:00 (118/164): ca-certificates-2018.2.26-1.0.fc28.n 13 MB/s | 395 kB 00:00 (119/164): keyutils-libs-1.5.10-6.fc28.i686.rpm 4.9 MB/s | 33 kB 00:00 (120/164): krb5-libs-1.16.1-21.fc28.i686.rpm 44 MB/s | 899 kB 00:00 (121/164): libverto-0.3.0-5.fc28.i686.rpm 2.3 MB/s | 24 kB 00:00 (122/164): pcre2-10.32-4.fc28.i686.rpm 33 MB/s | 244 kB 00:00 (123/164): gdb-headless-8.1.1-3.fc28.i686.rpm 21 MB/s | 3.9 MB 00:00 (124/164): libcom_err-1.44.2-0.fc28.i686.rpm 1.9 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0x9DB62FB1: Userid : "Fedora 28 (28) " Fingerprint: 128C F232 A937 1991 C8A6 5695 E08E 7E62 9DB6 2FB1 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-28-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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python3-libs-3.6.6-1.fc28.i686 136/164 Installing : systemd-libs-238-10.git438ac26.fc28.i686 137/164 Running scriptlet: systemd-libs-238-10.git438ac26.fc28.i686 137/164 Installing : glib2-2.56.3-2.fc28.i686 138/164 Installing : libbabeltrace-1.5.4-2.fc28.i686 139/164 Running scriptlet: libbabeltrace-1.5.4-2.fc28.i686 139/164 Installing : libfdisk-2.32.1-1.fc28.i686 140/164 Running scriptlet: libfdisk-2.32.1-1.fc28.i686 140/164 Installing : libssh-0.8.5-1.fc28.i686 141/164 Installing : cyrus-sasl-lib-2.1.27-0.2rc7.fc28.i686 142/164 Running scriptlet: cyrus-sasl-lib-2.1.27-0.2rc7.fc28.i686 142/164 Installing : shadow-utils-2:4.6-1.fc28.i686 143/164 Running scriptlet: libutempter-1.1.6-14.fc28.i686 144/164 Installing : libutempter-1.1.6-14.fc28.i686 144/164 Installing : nss-3.39.0-1.0.fc28.i686 145/164 Running scriptlet: nss-3.39.0-1.0.fc28.i686 145/164 Installing : nss-sysinit-3.39.0-1.0.fc28.i686 146/164 Installing : openldap-2.4.46-4.fc28.i686 147/164 Installing : libarchive-3.3.3-1.fc28.i686 148/164 Installing : libtool-ltdl-2.4.6-24.fc28.i686 149/164 Running scriptlet: libtool-ltdl-2.4.6-24.fc28.i686 149/164 Installing : guile-5:2.0.14-7.fc28.i686 150/164 Running scriptlet: guile-5:2.0.14-7.fc28.i686 150/164 Installing : libnghttp2-1.32.1-1.fc28.i686 151/164 Installing : libcurl-7.59.0-9.fc28.i686 152/164 Installing : curl-7.59.0-9.fc28.i686 153/164 Installing : rpm-plugin-selinux-4.14.2.1-2.fc28.i686 154/164 Installing : rpm-libs-4.14.2.1-2.fc28.i686 155/164 Running scriptlet: rpm-libs-4.14.2.1-2.fc28.i686 155/164 Installing : rpm-4.14.2.1-2.fc28.i686 156/164 Installing : redhat-rpm-config-109-1.fc28.noarch 157/164 Installing : rpm-build-libs-4.14.2.1-2.fc28.i686 158/164 Running scriptlet: rpm-build-libs-4.14.2.1-2.fc28.i686 158/164 Installing : gdb-headless-8.1.1-3.fc28.i686 159/164 Installing : rpm-build-4.14.2.1-2.fc28.i686 160/164 Installing : make-1:4.2.1-6.fc28.i686 161/164 Running scriptlet: make-1:4.2.1-6.fc28.i686 161/164 Installing : util-linux-2.32.1-1.fc28.i686 162/164 Running scriptlet: util-linux-2.32.1-1.fc28.i686 162/164 Installing : gcc-c++-8.2.1-5.fc28.i686 163/164 Installing : which-2.21-8.fc28.i686 164/164 Running scriptlet: which-2.21-8.fc28.i686 164/164 Running scriptlet: fedora-release-28-3.noarch 164/164 Running scriptlet: filesystem-3.8-2.fc28.i686 164/164 Running scriptlet: glibc-all-langpacks-2.27-32.fc28.i686 164/164 Running scriptlet: guile-5:2.0.14-7.fc28.i686 164/164 Running scriptlet: glibc-common-2.27-32.fc28.i686 164/164 Running scriptlet: info-6.5-4.fc28.i686 164/164 Running scriptlet: glib2-2.56.3-2.fc28.i686 164/164 Verifying : gawk-4.2.1-1.fc28.i686 1/164 Verifying : diffutils-3.6-4.fc28.i686 2/164 Verifying : gzip-1.9-3.fc28.i686 3/164 Verifying : make-1:4.2.1-6.fc28.i686 4/164 Verifying : sed-4.5-1.fc28.i686 5/164 Verifying : grep-3.1-5.fc28.i686 6/164 Verifying : which-2.21-8.fc28.i686 7/164 Verifying : tar-2:1.30-3.fc28.i686 8/164 Verifying : unzip-6.0-38.fc28.i686 9/164 Verifying : cpio-2.12-7.fc28.i686 10/164 Verifying : bzip2-1.0.6-26.fc28.i686 11/164 Verifying : gcc-c++-8.2.1-5.fc28.i686 12/164 Verifying : shadow-utils-2:4.6-1.fc28.i686 13/164 Verifying : util-linux-2.32.1-1.fc28.i686 14/164 Verifying : bash-4.4.23-1.fc28.i686 15/164 Verifying : redhat-rpm-config-109-1.fc28.noarch 16/164 Verifying : findutils-1:4.6.0-19.fc28.i686 17/164 Verifying : fedora-release-28-3.noarch 18/164 Verifying : rpm-build-4.14.2.1-2.fc28.i686 19/164 Verifying : patch-2.7.6-5.fc28.i686 20/164 Verifying : info-6.5-4.fc28.i686 21/164 Verifying : gcc-8.2.1-5.fc28.i686 22/164 Verifying : coreutils-8.29-7.fc28.i686 23/164 Verifying : xz-5.2.4-2.fc28.i686 24/164 Verifying : filesystem-3.8-2.fc28.i686 25/164 Verifying : gmp-1:6.1.2-7.fc28.i686 26/164 Verifying : libsigsegv-2.11-5.fc28.i686 27/164 Verifying : mpfr-3.1.6-1.fc28.i686 28/164 Verifying : gc-7.6.4-3.fc28.i686 29/164 Verifying : guile-5:2.0.14-7.fc28.i686 30/164 Verifying : bzip2-libs-1.0.6-26.fc28.i686 31/164 Verifying : libmpc-1.0.2-9.fc28.i686 32/164 Verifying : libstdc++-8.2.1-5.fc28.i686 33/164 Verifying : libstdc++-devel-8.2.1-5.fc28.i686 34/164 Verifying : libutempter-1.1.6-14.fc28.i686 35/164 Verifying : libblkid-2.32.1-1.fc28.i686 36/164 Verifying : libfdisk-2.32.1-1.fc28.i686 37/164 Verifying : libmount-2.32.1-1.fc28.i686 38/164 Verifying : libsmartcols-2.32.1-1.fc28.i686 39/164 Verifying : libuuid-2.32.1-1.fc28.i686 40/164 Verifying : dwz-0.12-7.fc28.i686 41/164 Verifying : fpc-srpm-macros-1.1-4.fc28.noarch 42/164 Verifying : ghc-srpm-macros-1.4.2-7.fc28.noarch 43/164 Verifying : gnat-srpm-macros-4-5.fc28.noarch 44/164 Verifying : go-srpm-macros-2-16.fc28.noarch 45/164 Verifying : nim-srpm-macros-1-1.fc28.noarch 46/164 Verifying : ocaml-srpm-macros-5-2.fc27.noarch 47/164 Verifying : openblas-srpm-macros-2-2.fc27.noarch 48/164 Verifying : perl-srpm-macros-1-25.fc28.noarch 49/164 Verifying : zip-3.0-21.fc28.i686 50/164 Verifying : libcap-2.25-9.fc28.i686 51/164 Verifying : libdb-5.3.28-30.fc28.i686 52/164 Verifying : lua-libs-5.3.4-10.fc28.i686 53/164 Verifying : pkgconf-pkg-config-1.4.2-1.fc28.i686 54/164 Verifying : popt-1.16-14.fc28.i686 55/164 Verifying : rpm-4.14.2.1-2.fc28.i686 56/164 Verifying : libattr-2.4.48-3.fc28.i686 57/164 Verifying : isl-0.16.1-6.fc28.i686 58/164 Verifying : cpp-8.2.1-5.fc28.i686 59/164 Verifying : libgcc-8.2.1-5.fc28.i686 60/164 Verifying : libgomp-8.2.1-5.fc28.i686 61/164 Verifying : coreutils-common-8.29-7.fc28.i686 62/164 Verifying : xz-libs-5.2.4-2.fc28.i686 63/164 Verifying : libatomic_ops-7.6.2-3.fc28.i686 64/164 Verifying : libffi-3.1-16.fc28.i686 65/164 Verifying : pkgconf-1.4.2-1.fc28.i686 66/164 Verifying : pkgconf-m4-1.4.2-1.fc28.noarch 67/164 Verifying : libdb-utils-5.3.28-30.fc28.i686 68/164 Verifying : libpkgconf-1.4.2-1.fc28.i686 69/164 Verifying : rpm-libs-4.14.2.1-2.fc28.i686 70/164 Verifying : rpm-plugin-selinux-4.14.2.1-2.fc28.i686 71/164 Verifying : rpm-build-libs-4.14.2.1-2.fc28.i686 72/164 Verifying : glibc-2.27-32.fc28.i686 73/164 Verifying : basesystem-11-5.fc28.noarch 74/164 Verifying : glibc-common-2.27-32.fc28.i686 75/164 Verifying : glibc-devel-2.27-32.fc28.i686 76/164 Verifying : glibc-headers-2.27-32.fc28.i686 77/164 Verifying : audit-libs-2.8.4-2.fc28.i686 78/164 Verifying : libcap-ng-0.7.9-4.fc28.i686 79/164 Verifying : libselinux-2.8-1.fc28.i686 80/164 Verifying : libsepol-2.8-1.fc28.i686 81/164 Verifying : libxcrypt-4.3.4-1.fc28.i686 82/164 Verifying : libxcrypt-devel-4.3.4-1.fc28.i686 83/164 Verifying : ncurses-libs-6.1-5.20180224.fc28.i686 84/164 Verifying : ncurses-base-6.1-5.20180224.fc28.noarch 85/164 Verifying : ncurses-6.1-5.20180224.fc28.i686 86/164 Verifying : pam-1.3.1-1.fc28.i686 87/164 Verifying : cracklib-2.9.6-13.fc28.i686 88/164 Verifying : libpwquality-1.4.0-7.fc28.i686 89/164 Verifying : systemd-libs-238-10.git438ac26.fc28.i686 90/164 Verifying : lz4-libs-1.8.1.2-4.fc28.i686 91/164 Verifying : zlib-1.2.11-8.fc28.i686 92/164 Verifying : libgcrypt-1.8.3-1.fc28.i686 93/164 Verifying : libacl-2.2.53-1.fc28.i686 94/164 Verifying : libsemanage-2.8-2.fc28.i686 95/164 Verifying : setup-2.11.4-1.fc28.noarch 96/164 Verifying : elfutils-libelf-0.174-5.fc28.i686 97/164 Verifying : elfutils-libs-0.174-5.fc28.i686 98/164 Verifying : elfutils-0.174-5.fc28.i686 99/164 Verifying : libzstd-1.3.6-1.fc28.i686 100/164 Verifying : openssl-libs-1:1.1.0i-1.fc28.i686 101/164 Verifying : file-libs-5.33-9.fc28.i686 102/164 Verifying : file-5.33-9.fc28.i686 103/164 Verifying : binutils-2.29.1-23.fc28.i686 104/164 Verifying : chkconfig-1.10-4.fc28.i686 105/164 Verifying : gdb-headless-8.1.1-3.fc28.i686 106/164 Verifying : expat-2.2.5-3.fc28.i686 107/164 Verifying : libbabeltrace-1.5.4-2.fc28.i686 108/164 Verifying : libipt-1.6.1-8.fc28.i686 109/164 Verifying : zstd-1.3.6-1.fc28.i686 110/164 Verifying : libarchive-3.3.3-1.fc28.i686 111/164 Verifying : annobin-5.7-3.fc28.i686 112/164 Verifying : python-srpm-macros-3-30.fc28.noarch 113/164 Verifying : qt5-srpm-macros-5.11.1-3.fc28.noarch 114/164 Verifying : rust-srpm-macros-6-1.fc28.noarch 115/164 Verifying : libnsl2-1.2.0-2.20180605git4a062cf.fc28.i686 116/164 Verifying : libtirpc-1.0.3-3.rc2.fc28.i686 117/164 Verifying : ca-certificates-2018.2.26-1.0.fc28.noarch 118/164 Verifying : crypto-policies-20180425-5.git6ad4018.fc28.noarc 119/164 Verifying : krb5-libs-1.16.1-21.fc28.i686 120/164 Verifying : keyutils-libs-1.5.10-6.fc28.i686 121/164 Verifying : libverto-0.3.0-5.fc28.i686 122/164 Verifying : libcom_err-1.44.2-0.fc28.i686 123/164 Verifying : pcre2-10.32-4.fc28.i686 124/164 Verifying : libgpg-error-1.31-1.fc28.i686 125/164 Verifying : libxml2-2.9.8-4.fc28.i686 126/164 Verifying : kernel-headers-4.19.2-200.fc28.i686 127/164 Verifying : tzdata-2018g-1.fc28.noarch 128/164 Verifying : python3-libs-3.6.6-1.fc28.i686 129/164 Verifying : gdbm-1:1.14.1-4.fc28.i686 130/164 Verifying : gdbm-libs-1:1.14.1-4.fc28.i686 131/164 Verifying : sqlite-libs-3.22.0-4.fc28.i686 132/164 Verifying : readline-7.0-11.fc28.i686 133/164 Verifying : libasan-8.2.1-5.fc28.i686 134/164 Verifying : libatomic-8.2.1-5.fc28.i686 135/164 Verifying : libmpx-8.2.1-5.fc28.i686 136/164 Verifying : libubsan-8.2.1-5.fc28.i686 137/164 Verifying : fedora-repos-28-5.noarch 138/164 Verifying : fedora-gpg-keys-28-5.noarch 139/164 Verifying : elfutils-default-yama-scope-0.174-5.fc28.noarch 140/164 Verifying : p11-kit-0.23.14-1.fc28.i686 141/164 Verifying : p11-kit-trust-0.23.14-1.fc28.i686 142/164 Verifying : libtasn1-4.13-2.fc28.i686 143/164 Verifying : glib2-2.56.3-2.fc28.i686 144/164 Verifying : libtool-ltdl-2.4.6-24.fc28.i686 145/164 Verifying : libunistring-0.9.10-1.fc28.i686 146/164 Verifying : pcre-8.42-5.fc28.i686 147/164 Verifying : curl-7.59.0-9.fc28.i686 148/164 Verifying : libmetalink-0.1.3-6.fc28.i686 149/164 Verifying : glibc-all-langpacks-2.27-32.fc28.i686 150/164 Verifying : libcurl-7.59.0-9.fc28.i686 151/164 Verifying : libssh-0.8.5-1.fc28.i686 152/164 Verifying : libidn2-2.0.5-1.fc28.i686 153/164 Verifying : libnghttp2-1.32.1-1.fc28.i686 154/164 Verifying : libpsl-0.20.2-2.fc28.i686 155/164 Verifying : openldap-2.4.46-4.fc28.i686 156/164 Verifying : cyrus-sasl-lib-2.1.27-0.2rc7.fc28.i686 157/164 Verifying : nspr-4.20.0-1.fc28.i686 158/164 Verifying : nss-3.39.0-1.0.fc28.i686 159/164 Verifying : nss-softokn-3.39.0-1.0.fc28.i686 160/164 Verifying : nss-util-3.39.0-1.0.fc28.i686 161/164 Verifying : nss-softokn-freebl-3.39.0-1.0.fc28.i686 162/164 Verifying : nss-sysinit-3.39.0-1.0.fc28.i686 163/164 Verifying : publicsuffix-list-dafsa-20180514-1.fc28.noarch 164/164 Installed: bash.i686 4.4.23-1.fc28 bzip2.i686 1.0.6-26.fc28 coreutils.i686 8.29-7.fc28 cpio.i686 2.12-7.fc28 diffutils.i686 3.6-4.fc28 fedora-release.noarch 28-3 findutils.i686 1:4.6.0-19.fc28 gawk.i686 4.2.1-1.fc28 gcc.i686 8.2.1-5.fc28 gcc-c++.i686 8.2.1-5.fc28 grep.i686 3.1-5.fc28 gzip.i686 1.9-3.fc28 info.i686 6.5-4.fc28 make.i686 1:4.2.1-6.fc28 patch.i686 2.7.6-5.fc28 redhat-rpm-config.noarch 109-1.fc28 rpm-build.i686 4.14.2.1-2.fc28 sed.i686 4.5-1.fc28 shadow-utils.i686 2:4.6-1.fc28 tar.i686 2:1.30-3.fc28 unzip.i686 6.0-38.fc28 util-linux.i686 2.32.1-1.fc28 which.i686 2.21-8.fc28 xz.i686 5.2.4-2.fc28 annobin.i686 5.7-3.fc28 audit-libs.i686 2.8.4-2.fc28 basesystem.noarch 11-5.fc28 binutils.i686 2.29.1-23.fc28 bzip2-libs.i686 1.0.6-26.fc28 ca-certificates.noarch 2018.2.26-1.0.fc28 chkconfig.i686 1.10-4.fc28 coreutils-common.i686 8.29-7.fc28 cpp.i686 8.2.1-5.fc28 cracklib.i686 2.9.6-13.fc28 crypto-policies.noarch 20180425-5.git6ad4018.fc28 curl.i686 7.59.0-9.fc28 cyrus-sasl-lib.i686 2.1.27-0.2rc7.fc28 dwz.i686 0.12-7.fc28 elfutils.i686 0.174-5.fc28 elfutils-default-yama-scope.noarch 0.174-5.fc28 elfutils-libelf.i686 0.174-5.fc28 elfutils-libs.i686 0.174-5.fc28 expat.i686 2.2.5-3.fc28 fedora-gpg-keys.noarch 28-5 fedora-repos.noarch 28-5 file.i686 5.33-9.fc28 file-libs.i686 5.33-9.fc28 filesystem.i686 3.8-2.fc28 fpc-srpm-macros.noarch 1.1-4.fc28 gc.i686 7.6.4-3.fc28 gdb-headless.i686 8.1.1-3.fc28 gdbm.i686 1:1.14.1-4.fc28 gdbm-libs.i686 1:1.14.1-4.fc28 ghc-srpm-macros.noarch 1.4.2-7.fc28 glib2.i686 2.56.3-2.fc28 glibc.i686 2.27-32.fc28 glibc-all-langpacks.i686 2.27-32.fc28 glibc-common.i686 2.27-32.fc28 glibc-devel.i686 2.27-32.fc28 glibc-headers.i686 2.27-32.fc28 gmp.i686 1:6.1.2-7.fc28 gnat-srpm-macros.noarch 4-5.fc28 go-srpm-macros.noarch 2-16.fc28 guile.i686 5:2.0.14-7.fc28 isl.i686 0.16.1-6.fc28 kernel-headers.i686 4.19.2-200.fc28 keyutils-libs.i686 1.5.10-6.fc28 krb5-libs.i686 1.16.1-21.fc28 libacl.i686 2.2.53-1.fc28 libarchive.i686 3.3.3-1.fc28 libasan.i686 8.2.1-5.fc28 libatomic.i686 8.2.1-5.fc28 libatomic_ops.i686 7.6.2-3.fc28 libattr.i686 2.4.48-3.fc28 libbabeltrace.i686 1.5.4-2.fc28 libblkid.i686 2.32.1-1.fc28 libcap.i686 2.25-9.fc28 libcap-ng.i686 0.7.9-4.fc28 libcom_err.i686 1.44.2-0.fc28 libcurl.i686 7.59.0-9.fc28 libdb.i686 5.3.28-30.fc28 libdb-utils.i686 5.3.28-30.fc28 libfdisk.i686 2.32.1-1.fc28 libffi.i686 3.1-16.fc28 libgcc.i686 8.2.1-5.fc28 libgcrypt.i686 1.8.3-1.fc28 libgomp.i686 8.2.1-5.fc28 libgpg-error.i686 1.31-1.fc28 libidn2.i686 2.0.5-1.fc28 libipt.i686 1.6.1-8.fc28 libmetalink.i686 0.1.3-6.fc28 libmount.i686 2.32.1-1.fc28 libmpc.i686 1.0.2-9.fc28 libmpx.i686 8.2.1-5.fc28 libnghttp2.i686 1.32.1-1.fc28 libnsl2.i686 1.2.0-2.20180605git4a062cf.fc28 libpkgconf.i686 1.4.2-1.fc28 libpsl.i686 0.20.2-2.fc28 libpwquality.i686 1.4.0-7.fc28 libselinux.i686 2.8-1.fc28 libsemanage.i686 2.8-2.fc28 libsepol.i686 2.8-1.fc28 libsigsegv.i686 2.11-5.fc28 libsmartcols.i686 2.32.1-1.fc28 libssh.i686 0.8.5-1.fc28 libstdc++.i686 8.2.1-5.fc28 libstdc++-devel.i686 8.2.1-5.fc28 libtasn1.i686 4.13-2.fc28 libtirpc.i686 1.0.3-3.rc2.fc28 libtool-ltdl.i686 2.4.6-24.fc28 libubsan.i686 8.2.1-5.fc28 libunistring.i686 0.9.10-1.fc28 libutempter.i686 1.1.6-14.fc28 libuuid.i686 2.32.1-1.fc28 libverto.i686 0.3.0-5.fc28 libxcrypt.i686 4.3.4-1.fc28 libxcrypt-devel.i686 4.3.4-1.fc28 libxml2.i686 2.9.8-4.fc28 libzstd.i686 1.3.6-1.fc28 lua-libs.i686 5.3.4-10.fc28 lz4-libs.i686 1.8.1.2-4.fc28 mpfr.i686 3.1.6-1.fc28 ncurses.i686 6.1-5.20180224.fc28 ncurses-base.noarch 6.1-5.20180224.fc28 ncurses-libs.i686 6.1-5.20180224.fc28 nim-srpm-macros.noarch 1-1.fc28 nspr.i686 4.20.0-1.fc28 nss.i686 3.39.0-1.0.fc28 nss-softokn.i686 3.39.0-1.0.fc28 nss-softokn-freebl.i686 3.39.0-1.0.fc28 nss-sysinit.i686 3.39.0-1.0.fc28 nss-util.i686 3.39.0-1.0.fc28 ocaml-srpm-macros.noarch 5-2.fc27 openblas-srpm-macros.noarch 2-2.fc27 openldap.i686 2.4.46-4.fc28 openssl-libs.i686 1:1.1.0i-1.fc28 p11-kit.i686 0.23.14-1.fc28 p11-kit-trust.i686 0.23.14-1.fc28 pam.i686 1.3.1-1.fc28 pcre.i686 8.42-5.fc28 pcre2.i686 10.32-4.fc28 perl-srpm-macros.noarch 1-25.fc28 pkgconf.i686 1.4.2-1.fc28 pkgconf-m4.noarch 1.4.2-1.fc28 pkgconf-pkg-config.i686 1.4.2-1.fc28 popt.i686 1.16-14.fc28 publicsuffix-list-dafsa.noarch 20180514-1.fc28 python-srpm-macros.noarch 3-30.fc28 python3-libs.i686 3.6.6-1.fc28 qt5-srpm-macros.noarch 5.11.1-3.fc28 readline.i686 7.0-11.fc28 rpm.i686 4.14.2.1-2.fc28 rpm-build-libs.i686 4.14.2.1-2.fc28 rpm-libs.i686 4.14.2.1-2.fc28 rpm-plugin-selinux.i686 4.14.2.1-2.fc28 rust-srpm-macros.noarch 6-1.fc28 setup.noarch 2.11.4-1.fc28 sqlite-libs.i686 3.22.0-4.fc28 systemd-libs.i686 238-10.git438ac26.fc28 tzdata.noarch 2018g-1.fc28 xz-libs.i686 5.2.4-2.fc28 zip.i686 3.0-21.fc28 zlib.i686 1.2.11-8.fc28 zstd.i686 1.3.6-1.fc28 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: Start: buildsrpm Start: rpmbuild -bs sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory Building target platforms: i686 Building for target i686 Wrote: /builddir/build/SRPMS/bionetgen-2.4.0-3.fc28.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/829451-fedora-28-i386-1543191539.104136/root/var/log/dnf.rpm.log /var/lib/mock/829451-fedora-28-i386-1543191539.104136/root/var/log/dnf.librepo.log /var/lib/mock/829451-fedora-28-i386-1543191539.104136/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/tmp/tmpd9504nhm/bionetgen.spec) Config(child) 1 minutes 32 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running: unbuffer /usr/bin/mock --rebuild /var/lib/copr-rpmbuild/results/bionetgen-2.4.0-3.fc28.src.rpm --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1543191632.692787 -r child WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.13 starting (python version = 3.6.5)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(/var/lib/copr-rpmbuild/results/bionetgen-2.4.0-3.fc28.src.rpm) Config(829451-fedora-28-i386) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/829451-fedora-28-i386-1543191632.692787/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled HW Info plugin Mock Version: 1.4.13 INFO: Mock Version: 1.4.13 Start: dnf update 'Copr repository' 235 kB/s | 51 kB 00:00 fedora 39 MB/s | 55 MB 00:01 updates 71 MB/s | 24 MB 00:00 Last metadata expiration check: 0:00:00 ago on Mon 26 Nov 2018 12:21:01 AM UTC. Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for bionetgen-2.4.0-3.fc28.src.rpm Start: build setup for bionetgen-2.4.0-3.fc28.src.rpm sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory Building target platforms: i686 Building for target i686 Wrote: /builddir/build/SRPMS/bionetgen-2.4.0-3.fc28.src.rpm Last metadata expiration check: 0:00:00 ago on Mon 26 Nov 2018 12:21:17 AM UTC. Package gcc-8.2.1-5.fc28.i686 is already installed, skipping. Package gcc-c++-8.2.1-5.fc28.i686 is already installed, skipping. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: autoconf noarch 2.69-27.fc28 fedora 710 k automake noarch 1.15.1-5.fc28 fedora 706 k libtool i686 2.4.6-24.fc28 updates 708 k muParser-devel i686 2.2.5-5.fc27 fedora 30 k openmpi-devel i686 4.0.0-1.fc28 copr_base 1.0 M perl-generators noarch 1.10-7.fc28 fedora 17 k sundials-devel i686 3.1.0-4.fc28 fedora 163 k Installing dependencies: Lmod i686 7.7.35-1.fc28 updates 222 k SuperLUMT-common noarch 3.1.0-15.fc28 fedora 648 k SuperLUMT-double i686 3.1.0-15.fc28 fedora 85 k acl i686 2.2.53-1.fc28 updates 81 k atlas i686 3.10.3-5.fc28 updates 6.1 M cryptsetup-libs i686 2.0.5-1.fc28 updates 336 k dbus i686 1:1.12.10-1.fc28 updates 283 k dbus-libs i686 1:1.12.10-1.fc28 updates 195 k device-mapper i686 1.02.146-5.fc28 updates 366 k device-mapper-libs i686 1.02.146-5.fc28 updates 409 k dracut i686 048-14.git20180726.fc28 updates 354 k emacs-filesystem noarch 1:26.1-3.fc28 updates 68 k fipscheck i686 1.5.0-4.fc28 fedora 26 k fipscheck-lib i686 1.5.0-4.fc28 fedora 15 k gcc-gfortran i686 8.2.1-5.fc28 updates 11 M groff-base i686 1.22.3-15.fc28 fedora 1.0 M hwloc-libs i686 1.11.9-1.fc28 fedora 1.6 M iptables-libs i686 1.6.2-3.fc28 updates 90 k json-c i686 0.13.1-2.fc28 updates 39 k kmod i686 25-2.fc28 fedora 126 k kmod-libs i686 25-2.fc28 fedora 71 k libargon2 i686 20161029-5.fc28 fedora 33 k libedit i686 3.1-23.20170329cvs.fc28 fedora 105 k libevent i686 2.1.8-2.fc28 fedora 270 k libfabric i686 1.6.1-1.fc28 updates 463 k libgfortran i686 8.2.1-5.fc28 updates 630 k libibumad i686 16.2-3.fc28 fedora 24 k libibverbs i686 16.2-3.fc28 fedora 247 k libkcapi i686 1.1.1-11.fc28 updates 45 k libkcapi-hmaccalc i686 1.1.1-11.fc28 updates 27 k libnl3 i686 3.4.0-3.fc28 fedora 325 k libpcap i686 14:1.9.0-1.fc28 updates 165 k libquadmath i686 8.2.1-5.fc28 updates 271 k libquadmath-devel i686 8.2.1-5.fc28 updates 42 k librdmacm i686 16.2-3.fc28 fedora 69 k libseccomp i686 2.3.3-2.fc28 fedora 60 k lua i686 5.3.4-10.fc28 fedora 200 k lua-filesystem i686 1.6.3-7.fc27 fedora 34 k lua-json noarch 1.3.2-9.fc28 fedora 27 k lua-lpeg i686 1.0.1-5.fc28 fedora 68 k lua-posix i686 33.3.1-8.fc28 fedora 179 k lua-term i686 0.07-1.fc25 fedora 14 k m4 i686 1.4.18-6.fc28 fedora 224 k muParser i686 2.2.5-5.fc27 fedora 130 k munge i686 0.5.12-9.fc28 fedora 110 k munge-libs i686 0.5.12-9.fc28 fedora 43 k numactl-libs i686 2.0.11-8.fc28 fedora 36 k openblas i686 0.3.3-2.fc28 updates 32 k openblas-openmp i686 0.3.3-2.fc28 updates 3.6 M openblas-serial i686 0.3.3-2.fc28 updates 3.5 M openmpi i686 4.0.0-1.fc28 copr_base 2.5 M opensm-libs i686 3.3.20-8.fc28 fedora 77 k openssh i686 7.8p1-3.fc28 updates 528 k openssh-clients i686 7.8p1-3.fc28 updates 728 k perl-Carp noarch 1.42-396.fc28 updates 29 k perl-Data-Dumper i686 2.167-399.fc28 fedora 58 k perl-Encode i686 4:2.97-3.fc28 fedora 1.1 M perl-Errno i686 1.28-414.fc28 updates 74 k perl-Exporter noarch 5.72-396.fc28 fedora 33 k perl-Fedora-VSP noarch 0.001-9.fc28 fedora 23 k perl-File-Path noarch 2.16-1.fc28 updates 37 k perl-File-Temp noarch 0.230.600-1.fc28 updates 62 k perl-Getopt-Long noarch 1:2.50-4.fc28 fedora 62 k perl-HTTP-Tiny noarch 0.076-1.fc28 updates 57 k perl-IO i686 1.38-414.fc28 updates 140 k perl-MIME-Base64 i686 3.15-396.fc28 fedora 30 k perl-PathTools i686 3.75-1.fc28 updates 89 k perl-Pod-Escapes noarch 1:1.07-395.fc28 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-1.fc28 updates 87 k perl-Pod-Simple noarch 1:3.35-395.fc28 fedora 212 k perl-Pod-Usage noarch 4:1.69-395.fc28 fedora 33 k perl-Scalar-List-Utils i686 3:1.49-2.fc28 fedora 68 k perl-Socket i686 4:2.027-2.fc28 fedora 59 k perl-Storable i686 1:3.11-3.fc28 updates 99 k perl-Term-ANSIColor noarch 4.06-396.fc28 fedora 45 k perl-Term-Cap noarch 1.17-395.fc28 fedora 22 k perl-Text-ParseWords noarch 3.30-395.fc28 fedora 17 k perl-Text-Tabs+Wrap noarch 2013.0523-395.fc28 fedora 23 k perl-Thread-Queue noarch 3.13-1.fc28 updates 23 k perl-Time-Local noarch 1:1.280-1.fc28 updates 32 k perl-Unicode-Normalize i686 1.25-396.fc28 fedora 74 k perl-constant noarch 1.33-396.fc28 fedora 24 k perl-interpreter i686 4:5.26.2-414.fc28 updates 6.3 M perl-libs i686 4:5.26.2-414.fc28 updates 1.7 M perl-macros i686 4:5.26.2-414.fc28 updates 70 k perl-parent noarch 1:0.236-395.fc28 fedora 19 k perl-podlators noarch 4.11-1.fc28 updates 117 k perl-threads i686 1:2.21-2.fc28 fedora 62 k perl-threads-shared i686 1.58-2.fc28 fedora 48 k pmix i686 3.0.2-1.fc28 copr_base 665 k procps-ng i686 3.3.12-3.fc28 updates 404 k qrencode-libs i686 3.4.4-5.fc28 fedora 59 k rdma-core i686 16.2-3.fc28 fedora 56 k rpm-mpi-hooks noarch 5-4.fc28 copr_base 12 k suitesparse i686 4.4.6-11.fc28 fedora 674 k sundials i686 3.1.0-4.fc28 fedora 469 k systemd i686 238-10.git438ac26.fc28 updates 3.7 M systemd-pam i686 238-10.git438ac26.fc28 updates 216 k systemd-udev i686 238-10.git438ac26.fc28 updates 1.3 M tbb i686 2018.5-1.fc28 updates 198 k tcl i686 1:8.6.8-1.fc28 fedora 1.2 M torque-libs i686 4.2.10-17.fc28 fedora 150 k Transaction Summary ================================================================================ Install 109 Packages Total download size: 61 M Installed size: 206 M Downloading Packages: (1/109): autoconf-2.69-27.fc28.noarch.rpm 9.7 MB/s | 710 kB 00:00 (2/109): perl-generators-1.10-7.fc28.noarch.rpm 2.9 MB/s | 17 kB 00:00 (3/109): automake-1.15.1-5.fc28.noarch.rpm 3.4 MB/s | 706 kB 00:00 (4/109): muParser-devel-2.2.5-5.fc27.i686.rpm 136 kB/s | 30 kB 00:00 (5/109): libtool-2.4.6-24.fc28.i686.rpm 13 MB/s | 708 kB 00:00 (6/109): sundials-devel-3.1.0-4.fc28.i686.rpm 877 kB/s | 163 kB 00:00 (7/109): m4-1.4.18-6.fc28.i686.rpm 11 MB/s | 224 kB 00:00 (8/109): perl-Data-Dumper-2.167-399.fc28.i686.r 5.0 MB/s | 58 kB 00:00 (9/109): perl-Exporter-5.72-396.fc28.noarch.rpm 6.2 MB/s | 33 kB 00:00 (10/109): perl-Getopt-Long-2.50-4.fc28.noarch.r 14 MB/s | 62 kB 00:00 (11/109): perl-Text-ParseWords-3.30-395.fc28.no 4.5 MB/s | 17 kB 00:00 (12/109): perl-constant-1.33-396.fc28.noarch.rp 7.2 MB/s | 24 kB 00:00 (13/109): perl-threads-2.21-2.fc28.i686.rpm 14 MB/s | 62 kB 00:00 (14/109): perl-Fedora-VSP-0.001-9.fc28.noarch.r 3.7 MB/s | 23 kB 00:00 (15/109): openmpi-devel-4.0.0-1.fc28.i686.rpm 7.0 MB/s | 1.0 MB 00:00 (16/109): muParser-2.2.5-5.fc27.i686.rpm 1.5 MB/s | 130 kB 00:00 (17/109): sundials-3.1.0-4.fc28.i686.rpm 4.3 MB/s | 469 kB 00:00 (18/109): libevent-2.1.8-2.fc28.i686.rpm 17 MB/s | 270 kB 00:00 (19/109): perl-Scalar-List-Utils-1.49-2.fc28.i6 11 MB/s | 68 kB 00:00 (20/109): hwloc-libs-1.11.9-1.fc28.i686.rpm 23 MB/s | 1.6 MB 00:00 (21/109): perl-Pod-Usage-1.69-395.fc28.noarch.r 2.6 MB/s | 33 kB 00:00 (22/109): openmpi-4.0.0-1.fc28.i686.rpm 15 MB/s | 2.5 MB 00:00 (23/109): SuperLUMT-double-3.1.0-15.fc28.i686.r 814 kB/s | 85 kB 00:00 (24/109): librdmacm-16.2-3.fc28.i686.rpm 11 MB/s | 69 kB 00:00 (25/109): suitesparse-4.4.6-11.fc28.i686.rpm 5.7 MB/s | 674 kB 00:00 (26/109): libibverbs-16.2-3.fc28.i686.rpm 11 MB/s | 247 kB 00:00 (27/109): opensm-libs-3.3.20-8.fc28.i686.rpm 8.2 MB/s | 77 kB 00:00 (28/109): torque-libs-4.2.10-17.fc28.i686.rpm 17 MB/s | 150 kB 00:00 (29/109): numactl-libs-2.0.11-8.fc28.i686.rpm 7.2 MB/s | 36 kB 00:00 (30/109): libfabric-1.6.1-1.fc28.i686.rpm 16 MB/s | 463 kB 00:00 (31/109): libnl3-3.4.0-3.fc28.i686.rpm 16 MB/s | 325 kB 00:00 (32/109): rdma-core-16.2-3.fc28.i686.rpm 14 MB/s | 56 kB 00:00 (33/109): libibumad-16.2-3.fc28.i686.rpm 4.1 MB/s | 24 kB 00:00 (34/109): munge-0.5.12-9.fc28.i686.rpm 11 MB/s | 110 kB 00:00 (35/109): munge-libs-0.5.12-9.fc28.i686.rpm 11 MB/s | 43 kB 00:00 (36/109): SuperLUMT-common-3.1.0-15.fc28.noarch 8.2 MB/s | 648 kB 00:00 (37/109): libgfortran-8.2.1-5.fc28.i686.rpm 24 MB/s | 630 kB 00:00 (38/109): libquadmath-8.2.1-5.fc28.i686.rpm 10 MB/s | 271 kB 00:00 (39/109): libquadmath-devel-8.2.1-5.fc28.i686.r 4.8 MB/s | 42 kB 00:00 (40/109): kmod-25-2.fc28.i686.rpm 18 MB/s | 126 kB 00:00 (41/109): acl-2.2.53-1.fc28.i686.rpm 12 MB/s | 81 kB 00:00 (42/109): kmod-libs-25-2.fc28.i686.rpm 14 MB/s | 71 kB 00:00 (43/109): libseccomp-2.3.3-2.fc28.i686.rpm 9.9 MB/s | 60 kB 00:00 (44/109): qrencode-libs-3.4.4-5.fc28.i686.rpm 6.5 MB/s | 59 kB 00:00 (45/109): systemd-pam-238-10.git438ac26.fc28.i6 6.1 MB/s | 216 kB 00:00 (46/109): cryptsetup-libs-2.0.5-1.fc28.i686.rpm 12 MB/s | 336 kB 00:00 (47/109): libargon2-20161029-5.fc28.i686.rpm 2.8 MB/s | 33 kB 00:00 (48/109): systemd-238-10.git438ac26.fc28.i686.r 26 MB/s | 3.7 MB 00:00 (49/109): dbus-libs-1.12.10-1.fc28.i686.rpm 19 MB/s | 195 kB 00:00 (50/109): dbus-1.12.10-1.fc28.i686.rpm 6.3 MB/s | 283 kB 00:00 (51/109): iptables-libs-1.6.2-3.fc28.i686.rpm 19 MB/s | 90 kB 00:00 (52/109): libpcap-1.9.0-1.fc28.i686.rpm 12 MB/s | 165 kB 00:00 (53/109): device-mapper-libs-1.02.146-5.fc28.i6 27 MB/s | 409 kB 00:00 (54/109): json-c-0.13.1-2.fc28.i686.rpm 8.2 MB/s | 39 kB 00:00 (55/109): device-mapper-1.02.146-5.fc28.i686.rp 14 MB/s | 366 kB 00:00 (56/109): gcc-gfortran-8.2.1-5.fc28.i686.rpm 23 MB/s | 11 MB 00:00 (57/109): dracut-048-14.git20180726.fc28.i686.r 16 MB/s | 354 kB 00:00 (58/109): tbb-2018.5-1.fc28.i686.rpm 1.0 MB/s | 198 kB 00:00 (59/109): libkcapi-hmaccalc-1.1.1-11.fc28.i686. 3.4 MB/s | 27 kB 00:00 (60/109): libkcapi-1.1.1-11.fc28.i686.rpm 6.3 MB/s | 45 kB 00:00 (61/109): systemd-udev-238-10.git438ac26.fc28.i 45 MB/s | 1.3 MB 00:00 (62/109): perl-Text-Tabs+Wrap-2013.0523-395.fc2 7.2 MB/s | 23 kB 00:00 (63/109): perl-Unicode-Normalize-1.25-396.fc28. 17 MB/s | 74 kB 00:00 (64/109): perl-parent-0.236-395.fc28.noarch.rpm 3.8 MB/s | 19 kB 00:00 (65/109): perl-threads-shared-1.58-2.fc28.i686. 4.9 MB/s | 48 kB 00:00 (66/109): perl-libs-5.26.2-414.fc28.i686.rpm 28 MB/s | 1.7 MB 00:00 (67/109): perl-Errno-1.28-414.fc28.i686.rpm 13 MB/s | 74 kB 00:00 (68/109): perl-Carp-1.42-396.fc28.noarch.rpm 5.3 MB/s | 29 kB 00:00 (69/109): perl-macros-5.26.2-414.fc28.i686.rpm 13 MB/s | 70 kB 00:00 (70/109): perl-PathTools-3.75-1.fc28.i686.rpm 20 MB/s | 89 kB 00:00 (71/109): perl-Pod-Perldoc-3.28.01-1.fc28.noarc 7.2 MB/s | 87 kB 00:00 (72/109): groff-base-1.22.3-15.fc28.i686.rpm 39 MB/s | 1.0 MB 00:00 (73/109): perl-Encode-2.97-3.fc28.i686.rpm 34 MB/s | 1.1 MB 00:00 (74/109): perl-Pod-Simple-3.35-395.fc28.noarch. 19 MB/s | 212 kB 00:00 (75/109): perl-MIME-Base64-3.15-396.fc28.i686.r 4.7 MB/s | 30 kB 00:00 (76/109): perl-Pod-Escapes-1.07-395.fc28.noarch 3.9 MB/s | 19 kB 00:00 (77/109): perl-interpreter-5.26.2-414.fc28.i686 27 MB/s | 6.3 MB 00:00 (78/109): perl-podlators-4.11-1.fc28.noarch.rpm 4.5 MB/s | 117 kB 00:00 (79/109): perl-Term-ANSIColor-4.06-396.fc28.noa 7.2 MB/s | 45 kB 00:00 (80/109): perl-Term-Cap-1.17-395.fc28.noarch.rp 4.0 MB/s | 22 kB 00:00 (81/109): perl-File-Path-2.16-1.fc28.noarch.rpm 12 MB/s | 37 kB 00:00 (82/109): perl-Storable-3.11-3.fc28.i686.rpm 15 MB/s | 99 kB 00:00 (83/109): perl-IO-1.38-414.fc28.i686.rpm 30 MB/s | 140 kB 00:00 (84/109): perl-Socket-2.027-2.fc28.i686.rpm 8.1 MB/s | 59 kB 00:00 (85/109): perl-Thread-Queue-3.13-1.fc28.noarch. 3.2 MB/s | 23 kB 00:00 (86/109): emacs-filesystem-26.1-3.fc28.noarch.r 2.9 MB/s | 68 kB 00:00 (87/109): openblas-0.3.3-2.fc28.i686.rpm 992 kB/s | 32 kB 00:00 (88/109): atlas-3.10.3-5.fc28.i686.rpm 9.5 MB/s | 6.1 MB 00:00 (89/109): rpm-mpi-hooks-5-4.fc28.noarch.rpm 5.8 MB/s | 12 kB 00:00 (90/109): pmix-3.0.2-1.fc28.i686.rpm 29 MB/s | 665 kB 00:00 (91/109): openblas-serial-0.3.3-2.fc28.i686.rpm 25 MB/s | 3.5 MB 00:00 (92/109): openblas-openmp-0.3.3-2.fc28.i686.rpm 17 MB/s | 3.6 MB 00:00 (93/109): fipscheck-lib-1.5.0-4.fc28.i686.rpm 954 kB/s | 15 kB 00:00 (94/109): libedit-3.1-23.20170329cvs.fc28.i686. 15 MB/s | 105 kB 00:00 (95/109): openssh-clients-7.8p1-3.fc28.i686.rpm 17 MB/s | 728 kB 00:00 (96/109): fipscheck-1.5.0-4.fc28.i686.rpm 4.0 MB/s | 26 kB 00:00 (97/109): openssh-7.8p1-3.fc28.i686.rpm 27 MB/s | 528 kB 00:00 (98/109): perl-File-Temp-0.230.600-1.fc28.noarc 5.5 MB/s | 62 kB 00:00 (99/109): perl-HTTP-Tiny-0.076-1.fc28.noarch.rp 5.3 MB/s | 57 kB 00:00 (100/109): perl-Time-Local-1.280-1.fc28.noarch. 4.2 MB/s | 32 kB 00:00 (101/109): Lmod-7.7.35-1.fc28.i686.rpm 10 MB/s | 222 kB 00:00 (102/109): lua-5.3.4-10.fc28.i686.rpm 8.9 MB/s | 200 kB 00:00 (103/109): procps-ng-3.3.12-3.fc28.i686.rpm 14 MB/s | 404 kB 00:00 (104/109): lua-filesystem-1.6.3-7.fc27.i686.rpm 5.8 MB/s | 34 kB 00:00 (105/109): lua-json-1.3.2-9.fc28.noarch.rpm 6.3 MB/s | 27 kB 00:00 (106/109): lua-term-0.07-1.fc25.i686.rpm 6.4 MB/s | 14 kB 00:00 (107/109): lua-lpeg-1.0.1-5.fc28.i686.rpm 17 MB/s | 68 kB 00:00 (108/109): lua-posix-33.3.1-8.fc28.i686.rpm 17 MB/s | 179 kB 00:00 (109/109): tcl-8.6.8-1.fc28.i686.rpm 41 MB/s | 1.2 MB 00:00 -------------------------------------------------------------------------------- Total 35 MB/s | 61 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : perl-libs-4:5.26.2-414.fc28.i686 1/109 Installing : perl-Carp-1.42-396.fc28.noarch 2/109 Installing : perl-Exporter-5.72-396.fc28.noarch 3/109 Installing : perl-Scalar-List-Utils-3:1.49-2.fc28.i686 4/109 Installing : libquadmath-8.2.1-5.fc28.i686 5/109 Running scriptlet: libquadmath-8.2.1-5.fc28.i686 5/109 Installing : perl-Text-ParseWords-3.30-395.fc28.noarch 6/109 Installing : libgfortran-8.2.1-5.fc28.i686 7/109 Running scriptlet: libgfortran-8.2.1-5.fc28.i686 7/109 Installing : fipscheck-1.5.0-4.fc28.i686 8/109 Installing : fipscheck-lib-1.5.0-4.fc28.i686 9/109 Running scriptlet: fipscheck-lib-1.5.0-4.fc28.i686 9/109 Installing : kmod-libs-25-2.fc28.i686 10/109 Running scriptlet: kmod-libs-25-2.fc28.i686 10/109 Installing : kmod-25-2.fc28.i686 11/109 Installing : munge-libs-0.5.12-9.fc28.i686 12/109 Running scriptlet: munge-libs-0.5.12-9.fc28.i686 12/109 Installing : libevent-2.1.8-2.fc28.i686 13/109 Installing : perl-macros-4:5.26.2-414.fc28.i686 14/109 Installing : openblas-0.3.3-2.fc28.i686 15/109 Running scriptlet: openblas-0.3.3-2.fc28.i686 15/109 Installing : libquadmath-devel-8.2.1-5.fc28.i686 16/109 Installing : perl-Term-ANSIColor-4.06-396.fc28.noarch 17/109 Installing : perl-Fedora-VSP-0.001-9.fc28.noarch 18/109 Installing : emacs-filesystem-1:26.1-3.fc28.noarch 19/109 Installing : SuperLUMT-common-3.1.0-15.fc28.noarch 20/109 Installing : perl-constant-1.33-396.fc28.noarch 21/109 Installing : perl-threads-shared-1.58-2.fc28.i686 22/109 Installing : perl-threads-1:2.21-2.fc28.i686 23/109 Installing : perl-Text-Tabs+Wrap-2013.0523-395.fc28.noarch 24/109 Installing : perl-Unicode-Normalize-1.25-396.fc28.i686 25/109 Installing : perl-parent-1:0.236-395.fc28.noarch 26/109 Installing : perl-PathTools-3.75-1.fc28.i686 27/109 Installing : perl-Errno-1.28-414.fc28.i686 28/109 Installing : perl-File-Path-2.16-1.fc28.noarch 29/109 Installing : perl-interpreter-4:5.26.2-414.fc28.i686 30/109 Installing : perl-Socket-4:2.027-2.fc28.i686 31/109 Installing : perl-IO-1.38-414.fc28.i686 32/109 Installing : perl-MIME-Base64-3.15-396.fc28.i686 33/109 Installing : gcc-gfortran-8.2.1-5.fc28.i686 34/109 Running scriptlet: gcc-gfortran-8.2.1-5.fc28.i686 34/109 Installing : lua-5.3.4-10.fc28.i686 35/109 Installing : procps-ng-3.3.12-3.fc28.i686 36/109 Installing : libnl3-3.4.0-3.fc28.i686 37/109 Running scriptlet: libnl3-3.4.0-3.fc28.i686 37/109 Installing : perl-File-Temp-0.230.600-1.fc28.noarch 38/109 Installing : perl-Pod-Escapes-1:1.07-395.fc28.noarch 39/109 Installing : perl-Term-Cap-1.17-395.fc28.noarch 40/109 Installing : perl-Time-Local-1:1.280-1.fc28.noarch 41/109 Installing : perl-HTTP-Tiny-0.076-1.fc28.noarch 42/109 Installing : perl-Thread-Queue-3.13-1.fc28.noarch 43/109 Installing : perl-Storable-1:3.11-3.fc28.i686 44/109 Installing : perl-Data-Dumper-2.167-399.fc28.i686 45/109 Installing : openblas-openmp-0.3.3-2.fc28.i686 46/109 Running scriptlet: openblas-openmp-0.3.3-2.fc28.i686 46/109 Installing : SuperLUMT-double-3.1.0-15.fc28.i686 47/109 Installing : openblas-serial-0.3.3-2.fc28.i686 48/109 Running scriptlet: openssh-7.8p1-3.fc28.i686 49/109 Installing : openssh-7.8p1-3.fc28.i686 49/109 Installing : atlas-3.10.3-5.fc28.i686 50/109 Running scriptlet: atlas-3.10.3-5.fc28.i686 50/109 Installing : lua-lpeg-1.0.1-5.fc28.i686 51/109 Installing : lua-json-1.3.2-9.fc28.noarch 52/109 Installing : tcl-1:8.6.8-1.fc28.i686 53/109 Running scriptlet: tcl-1:8.6.8-1.fc28.i686 53/109 Installing : lua-term-0.07-1.fc25.i686 54/109 Installing : lua-posix-33.3.1-8.fc28.i686 55/109 Installing : lua-filesystem-1.6.3-7.fc27.i686 56/109 Installing : Lmod-7.7.35-1.fc28.i686 57/109 Running scriptlet: Lmod-7.7.35-1.fc28.i686 57/109 Installing : rpm-mpi-hooks-5-4.fc28.noarch 58/109 Installing : libedit-3.1-23.20170329cvs.fc28.i686 59/109 Installing : openssh-clients-7.8p1-3.fc28.i686 60/109 Installing : groff-base-1.22.3-15.fc28.i686 61/109 Installing : perl-Encode-4:2.97-3.fc28.i686 62/109 Installing : perl-Pod-Simple-1:3.35-395.fc28.noarch 63/109 Installing : perl-Getopt-Long-1:2.50-4.fc28.noarch 64/109 Installing : perl-podlators-4.11-1.fc28.noarch 65/109 Installing : perl-Pod-Perldoc-3.28.01-1.fc28.noarch 66/109 Installing : perl-Pod-Usage-4:1.69-395.fc28.noarch 67/109 Installing : tbb-2018.5-1.fc28.i686 68/109 Installing : suitesparse-4.4.6-11.fc28.i686 69/109 Running scriptlet: suitesparse-4.4.6-11.fc28.i686 69/109 Installing : sundials-3.1.0-4.fc28.i686 70/109 Installing : json-c-0.13.1-2.fc28.i686 71/109 Installing : libpcap-14:1.9.0-1.fc28.i686 72/109 Installing : iptables-libs-1.6.2-3.fc28.i686 73/109 Installing : dbus-libs-1:1.12.10-1.fc28.i686 74/109 Running scriptlet: dbus-libs-1:1.12.10-1.fc28.i686 74/109 Installing : libargon2-20161029-5.fc28.i686 75/109 Installing : qrencode-libs-3.4.4-5.fc28.i686 76/109 Installing : libseccomp-2.3.3-2.fc28.i686 77/109 Running scriptlet: libseccomp-2.3.3-2.fc28.i686 77/109 Installing : acl-2.2.53-1.fc28.i686 78/109 Installing : device-mapper-1.02.146-5.fc28.i686 79/109 Installing : device-mapper-libs-1.02.146-5.fc28.i686 80/109 Running scriptlet: device-mapper-libs-1.02.146-5.fc28.i686 80/109 Installing : cryptsetup-libs-2.0.5-1.fc28.i686 81/109 Running scriptlet: cryptsetup-libs-2.0.5-1.fc28.i686 81/109 Installing : systemd-pam-238-10.git438ac26.fc28.i686 82/109 Running scriptlet: systemd-238-10.git438ac26.fc28.i686 83/109 Installing : systemd-238-10.git438ac26.fc28.i686 83/109 Running scriptlet: systemd-238-10.git438ac26.fc28.i686 83/109 Running scriptlet: dbus-1:1.12.10-1.fc28.i686 84/109 Installing : dbus-1:1.12.10-1.fc28.i686 84/109 Running scriptlet: dbus-1:1.12.10-1.fc28.i686 84/109 Running scriptlet: munge-0.5.12-9.fc28.i686 85/109 Installing : munge-0.5.12-9.fc28.i686 85/109 Running scriptlet: munge-0.5.12-9.fc28.i686 85/109 Installing : torque-libs-4.2.10-17.fc28.i686 86/109 Running scriptlet: torque-libs-4.2.10-17.fc28.i686 86/109 Installing : systemd-udev-238-10.git438ac26.fc28.i686 87/109 Running scriptlet: systemd-udev-238-10.git438ac26.fc28.i686 87/109 Installing : libkcapi-1.1.1-11.fc28.i686 88/109 Installing : libkcapi-hmaccalc-1.1.1-11.fc28.i686 89/109 Installing : dracut-048-14.git20180726.fc28.i686 90/109 Installing : rdma-core-16.2-3.fc28.i686 91/109 Installing : libibverbs-16.2-3.fc28.i686 92/109 Running scriptlet: libibverbs-16.2-3.fc28.i686 92/109 Installing : librdmacm-16.2-3.fc28.i686 93/109 Running scriptlet: librdmacm-16.2-3.fc28.i686 93/109 Installing : libfabric-1.6.1-1.fc28.i686 94/109 Running scriptlet: libfabric-1.6.1-1.fc28.i686 94/109 Installing : libibumad-16.2-3.fc28.i686 95/109 Running scriptlet: libibumad-16.2-3.fc28.i686 95/109 Installing : opensm-libs-3.3.20-8.fc28.i686 96/109 Running scriptlet: opensm-libs-3.3.20-8.fc28.i686 96/109 Installing : numactl-libs-2.0.11-8.fc28.i686 97/109 Running scriptlet: numactl-libs-2.0.11-8.fc28.i686 97/109 Installing : hwloc-libs-1.11.9-1.fc28.i686 98/109 Installing : pmix-3.0.2-1.fc28.i686 99/109 Installing : openmpi-4.0.0-1.fc28.i686 100/109 Installing : muParser-2.2.5-5.fc27.i686 101/109 Running scriptlet: muParser-2.2.5-5.fc27.i686 101/109 Installing : m4-1.4.18-6.fc28.i686 102/109 Running scriptlet: m4-1.4.18-6.fc28.i686 102/109 Installing : autoconf-2.69-27.fc28.noarch 103/109 Running scriptlet: autoconf-2.69-27.fc28.noarch 103/109 Installing : automake-1.15.1-5.fc28.noarch 104/109 Running scriptlet: automake-1.15.1-5.fc28.noarch 104/109 Installing : libtool-2.4.6-24.fc28.i686 105/109 Running scriptlet: libtool-2.4.6-24.fc28.i686 105/109 Installing : muParser-devel-2.2.5-5.fc27.i686 106/109 Installing : sundials-devel-3.1.0-4.fc28.i686 107/109 Installing : perl-generators-1.10-7.fc28.noarch 108/109 Installing : openmpi-devel-4.0.0-1.fc28.i686 109/109 Running scriptlet: openmpi-devel-4.0.0-1.fc28.i686 109/109 Running scriptlet: systemd-238-10.git438ac26.fc28.i686 109/109 Running scriptlet: systemd-udev-238-10.git438ac26.fc28.i686 109/109 Verifying : autoconf-2.69-27.fc28.noarch 1/109 Verifying : automake-1.15.1-5.fc28.noarch 2/109 Verifying : muParser-devel-2.2.5-5.fc27.i686 3/109 Verifying : perl-generators-1.10-7.fc28.noarch 4/109 Verifying : sundials-devel-3.1.0-4.fc28.i686 5/109 Verifying : libtool-2.4.6-24.fc28.i686 6/109 Verifying : openmpi-devel-4.0.0-1.fc28.i686 7/109 Verifying : m4-1.4.18-6.fc28.i686 8/109 Verifying : perl-Data-Dumper-2.167-399.fc28.i686 9/109 Verifying : perl-Exporter-5.72-396.fc28.noarch 10/109 Verifying : perl-Getopt-Long-1:2.50-4.fc28.noarch 11/109 Verifying : perl-Text-ParseWords-3.30-395.fc28.noarch 12/109 Verifying : perl-constant-1.33-396.fc28.noarch 13/109 Verifying : perl-threads-1:2.21-2.fc28.i686 14/109 Verifying : muParser-2.2.5-5.fc27.i686 15/109 Verifying : perl-Fedora-VSP-0.001-9.fc28.noarch 16/109 Verifying : sundials-3.1.0-4.fc28.i686 17/109 Verifying : openmpi-4.0.0-1.fc28.i686 18/109 Verifying : hwloc-libs-1.11.9-1.fc28.i686 19/109 Verifying : libevent-2.1.8-2.fc28.i686 20/109 Verifying : perl-Scalar-List-Utils-3:1.49-2.fc28.i686 21/109 Verifying : perl-Pod-Usage-4:1.69-395.fc28.noarch 22/109 Verifying : SuperLUMT-double-3.1.0-15.fc28.i686 23/109 Verifying : suitesparse-4.4.6-11.fc28.i686 24/109 Verifying : libibverbs-16.2-3.fc28.i686 25/109 Verifying : librdmacm-16.2-3.fc28.i686 26/109 Verifying : opensm-libs-3.3.20-8.fc28.i686 27/109 Verifying : torque-libs-4.2.10-17.fc28.i686 28/109 Verifying : libfabric-1.6.1-1.fc28.i686 29/109 Verifying : numactl-libs-2.0.11-8.fc28.i686 30/109 Verifying : SuperLUMT-common-3.1.0-15.fc28.noarch 31/109 Verifying : gcc-gfortran-8.2.1-5.fc28.i686 32/109 Verifying : libnl3-3.4.0-3.fc28.i686 33/109 Verifying : rdma-core-16.2-3.fc28.i686 34/109 Verifying : libibumad-16.2-3.fc28.i686 35/109 Verifying : munge-0.5.12-9.fc28.i686 36/109 Verifying : munge-libs-0.5.12-9.fc28.i686 37/109 Verifying : libgfortran-8.2.1-5.fc28.i686 38/109 Verifying : libquadmath-8.2.1-5.fc28.i686 39/109 Verifying : libquadmath-devel-8.2.1-5.fc28.i686 40/109 Verifying : kmod-25-2.fc28.i686 41/109 Verifying : systemd-238-10.git438ac26.fc28.i686 42/109 Verifying : acl-2.2.53-1.fc28.i686 43/109 Verifying : kmod-libs-25-2.fc28.i686 44/109 Verifying : libseccomp-2.3.3-2.fc28.i686 45/109 Verifying : qrencode-libs-3.4.4-5.fc28.i686 46/109 Verifying : systemd-pam-238-10.git438ac26.fc28.i686 47/109 Verifying : cryptsetup-libs-2.0.5-1.fc28.i686 48/109 Verifying : libargon2-20161029-5.fc28.i686 49/109 Verifying : dbus-1:1.12.10-1.fc28.i686 50/109 Verifying : dbus-libs-1:1.12.10-1.fc28.i686 51/109 Verifying : iptables-libs-1.6.2-3.fc28.i686 52/109 Verifying : libpcap-14:1.9.0-1.fc28.i686 53/109 Verifying : device-mapper-libs-1.02.146-5.fc28.i686 54/109 Verifying : device-mapper-1.02.146-5.fc28.i686 55/109 Verifying : json-c-0.13.1-2.fc28.i686 56/109 Verifying : atlas-3.10.3-5.fc28.i686 57/109 Verifying : tbb-2018.5-1.fc28.i686 58/109 Verifying : dracut-048-14.git20180726.fc28.i686 59/109 Verifying : systemd-udev-238-10.git438ac26.fc28.i686 60/109 Verifying : libkcapi-hmaccalc-1.1.1-11.fc28.i686 61/109 Verifying : libkcapi-1.1.1-11.fc28.i686 62/109 Verifying : perl-interpreter-4:5.26.2-414.fc28.i686 63/109 Verifying : perl-Text-Tabs+Wrap-2013.0523-395.fc28.noarch 64/109 Verifying : perl-Unicode-Normalize-1.25-396.fc28.i686 65/109 Verifying : perl-parent-1:0.236-395.fc28.noarch 66/109 Verifying : perl-threads-shared-1.58-2.fc28.i686 67/109 Verifying : perl-libs-4:5.26.2-414.fc28.i686 68/109 Verifying : perl-Errno-1.28-414.fc28.i686 69/109 Verifying : perl-Carp-1.42-396.fc28.noarch 70/109 Verifying : perl-macros-4:5.26.2-414.fc28.i686 71/109 Verifying : perl-PathTools-3.75-1.fc28.i686 72/109 Verifying : perl-Pod-Perldoc-3.28.01-1.fc28.noarch 73/109 Verifying : groff-base-1.22.3-15.fc28.i686 74/109 Verifying : perl-Encode-4:2.97-3.fc28.i686 75/109 Verifying : perl-Pod-Simple-1:3.35-395.fc28.noarch 76/109 Verifying : perl-MIME-Base64-3.15-396.fc28.i686 77/109 Verifying : perl-Pod-Escapes-1:1.07-395.fc28.noarch 78/109 Verifying : perl-podlators-4.11-1.fc28.noarch 79/109 Verifying : perl-Term-ANSIColor-4.06-396.fc28.noarch 80/109 Verifying : perl-Term-Cap-1.17-395.fc28.noarch 81/109 Verifying : perl-Storable-1:3.11-3.fc28.i686 82/109 Verifying : perl-File-Path-2.16-1.fc28.noarch 83/109 Verifying : perl-IO-1.38-414.fc28.i686 84/109 Verifying : perl-Socket-4:2.027-2.fc28.i686 85/109 Verifying : perl-Thread-Queue-3.13-1.fc28.noarch 86/109 Verifying : emacs-filesystem-1:26.1-3.fc28.noarch 87/109 Verifying : openblas-openmp-0.3.3-2.fc28.i686 88/109 Verifying : openblas-0.3.3-2.fc28.i686 89/109 Verifying : openblas-serial-0.3.3-2.fc28.i686 90/109 Verifying : rpm-mpi-hooks-5-4.fc28.noarch 91/109 Verifying : pmix-3.0.2-1.fc28.i686 92/109 Verifying : openssh-clients-7.8p1-3.fc28.i686 93/109 Verifying : fipscheck-lib-1.5.0-4.fc28.i686 94/109 Verifying : libedit-3.1-23.20170329cvs.fc28.i686 95/109 Verifying : openssh-7.8p1-3.fc28.i686 96/109 Verifying : fipscheck-1.5.0-4.fc28.i686 97/109 Verifying : perl-File-Temp-0.230.600-1.fc28.noarch 98/109 Verifying : perl-HTTP-Tiny-0.076-1.fc28.noarch 99/109 Verifying : perl-Time-Local-1:1.280-1.fc28.noarch 100/109 Verifying : procps-ng-3.3.12-3.fc28.i686 101/109 Verifying : Lmod-7.7.35-1.fc28.i686 102/109 Verifying : lua-5.3.4-10.fc28.i686 103/109 Verifying : lua-filesystem-1.6.3-7.fc27.i686 104/109 Verifying : lua-json-1.3.2-9.fc28.noarch 105/109 Verifying : lua-posix-33.3.1-8.fc28.i686 106/109 Verifying : lua-term-0.07-1.fc25.i686 107/109 Verifying : tcl-1:8.6.8-1.fc28.i686 108/109 Verifying : lua-lpeg-1.0.1-5.fc28.i686 109/109 Installed: autoconf.noarch 2.69-27.fc28 automake.noarch 1.15.1-5.fc28 libtool.i686 2.4.6-24.fc28 muParser-devel.i686 2.2.5-5.fc27 openmpi-devel.i686 4.0.0-1.fc28 perl-generators.noarch 1.10-7.fc28 sundials-devel.i686 3.1.0-4.fc28 Lmod.i686 7.7.35-1.fc28 SuperLUMT-common.noarch 3.1.0-15.fc28 SuperLUMT-double.i686 3.1.0-15.fc28 acl.i686 2.2.53-1.fc28 atlas.i686 3.10.3-5.fc28 cryptsetup-libs.i686 2.0.5-1.fc28 dbus.i686 1:1.12.10-1.fc28 dbus-libs.i686 1:1.12.10-1.fc28 device-mapper.i686 1.02.146-5.fc28 device-mapper-libs.i686 1.02.146-5.fc28 dracut.i686 048-14.git20180726.fc28 emacs-filesystem.noarch 1:26.1-3.fc28 fipscheck.i686 1.5.0-4.fc28 fipscheck-lib.i686 1.5.0-4.fc28 gcc-gfortran.i686 8.2.1-5.fc28 groff-base.i686 1.22.3-15.fc28 hwloc-libs.i686 1.11.9-1.fc28 iptables-libs.i686 1.6.2-3.fc28 json-c.i686 0.13.1-2.fc28 kmod.i686 25-2.fc28 kmod-libs.i686 25-2.fc28 libargon2.i686 20161029-5.fc28 libedit.i686 3.1-23.20170329cvs.fc28 libevent.i686 2.1.8-2.fc28 libfabric.i686 1.6.1-1.fc28 libgfortran.i686 8.2.1-5.fc28 libibumad.i686 16.2-3.fc28 libibverbs.i686 16.2-3.fc28 libkcapi.i686 1.1.1-11.fc28 libkcapi-hmaccalc.i686 1.1.1-11.fc28 libnl3.i686 3.4.0-3.fc28 libpcap.i686 14:1.9.0-1.fc28 libquadmath.i686 8.2.1-5.fc28 libquadmath-devel.i686 8.2.1-5.fc28 librdmacm.i686 16.2-3.fc28 libseccomp.i686 2.3.3-2.fc28 lua.i686 5.3.4-10.fc28 lua-filesystem.i686 1.6.3-7.fc27 lua-json.noarch 1.3.2-9.fc28 lua-lpeg.i686 1.0.1-5.fc28 lua-posix.i686 33.3.1-8.fc28 lua-term.i686 0.07-1.fc25 m4.i686 1.4.18-6.fc28 muParser.i686 2.2.5-5.fc27 munge.i686 0.5.12-9.fc28 munge-libs.i686 0.5.12-9.fc28 numactl-libs.i686 2.0.11-8.fc28 openblas.i686 0.3.3-2.fc28 openblas-openmp.i686 0.3.3-2.fc28 openblas-serial.i686 0.3.3-2.fc28 openmpi.i686 4.0.0-1.fc28 opensm-libs.i686 3.3.20-8.fc28 openssh.i686 7.8p1-3.fc28 openssh-clients.i686 7.8p1-3.fc28 perl-Carp.noarch 1.42-396.fc28 perl-Data-Dumper.i686 2.167-399.fc28 perl-Encode.i686 4:2.97-3.fc28 perl-Errno.i686 1.28-414.fc28 perl-Exporter.noarch 5.72-396.fc28 perl-Fedora-VSP.noarch 0.001-9.fc28 perl-File-Path.noarch 2.16-1.fc28 perl-File-Temp.noarch 0.230.600-1.fc28 perl-Getopt-Long.noarch 1:2.50-4.fc28 perl-HTTP-Tiny.noarch 0.076-1.fc28 perl-IO.i686 1.38-414.fc28 perl-MIME-Base64.i686 3.15-396.fc28 perl-PathTools.i686 3.75-1.fc28 perl-Pod-Escapes.noarch 1:1.07-395.fc28 perl-Pod-Perldoc.noarch 3.28.01-1.fc28 perl-Pod-Simple.noarch 1:3.35-395.fc28 perl-Pod-Usage.noarch 4:1.69-395.fc28 perl-Scalar-List-Utils.i686 3:1.49-2.fc28 perl-Socket.i686 4:2.027-2.fc28 perl-Storable.i686 1:3.11-3.fc28 perl-Term-ANSIColor.noarch 4.06-396.fc28 perl-Term-Cap.noarch 1.17-395.fc28 perl-Text-ParseWords.noarch 3.30-395.fc28 perl-Text-Tabs+Wrap.noarch 2013.0523-395.fc28 perl-Thread-Queue.noarch 3.13-1.fc28 perl-Time-Local.noarch 1:1.280-1.fc28 perl-Unicode-Normalize.i686 1.25-396.fc28 perl-constant.noarch 1.33-396.fc28 perl-interpreter.i686 4:5.26.2-414.fc28 perl-libs.i686 4:5.26.2-414.fc28 perl-macros.i686 4:5.26.2-414.fc28 perl-parent.noarch 1:0.236-395.fc28 perl-podlators.noarch 4.11-1.fc28 perl-threads.i686 1:2.21-2.fc28 perl-threads-shared.i686 1.58-2.fc28 pmix.i686 3.0.2-1.fc28 procps-ng.i686 3.3.12-3.fc28 qrencode-libs.i686 3.4.4-5.fc28 rdma-core.i686 16.2-3.fc28 rpm-mpi-hooks.noarch 5-4.fc28 suitesparse.i686 4.4.6-11.fc28 sundials.i686 3.1.0-4.fc28 systemd.i686 238-10.git438ac26.fc28 systemd-pam.i686 238-10.git438ac26.fc28 systemd-udev.i686 238-10.git438ac26.fc28 tbb.i686 2018.5-1.fc28 tcl.i686 1:8.6.8-1.fc28 torque-libs.i686 4.2.10-17.fc28 Complete! Finish: build setup for bionetgen-2.4.0-3.fc28.src.rpm Start: rpmbuild bionetgen-2.4.0-3.fc28.src.rpm Building target platforms: i686 Building for target i686 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.OfRlRP + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bionetgen-BioNetGen-2.4.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/bionetgen-BioNetGen-2.4.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd bionetgen-BioNetGen-2.4.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/bionetgen-network-solver.patch + rm bng2/libsource/Mathutils.tar.gz bng2/libsource/cvode-2.6.0.tar.gz bng2/libsource/gsl-1.9.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz bng2/libsource/muparser_v2_2_4.zip + pushd bng2/Network3 ~/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3 ~/build/BUILD/bionetgen-BioNetGen-2.4.0 + sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' configure.ac + sed -i 's/cvode-.*//; s/muparser_.*//' configure.ac Makefile.am + sed -i -r 's/(run_network_LDADD =).*/\1 libmathutils.la -lmuparser -lsundials_nvecserial -lsundials_cvode/' src/Makefile.am + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.XvUFGt + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 ~/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3 ~/build/BUILD/bionetgen-BioNetGen-2.4.0 + pushd bng2/Network3 + autoreconf -iv autoreconf: Entering directory `.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal -I m4 aclocal: warning: couldn't open directory 'm4': No such file or directory autoreconf: configure.ac: tracing autoreconf: running: libtoolize --copy libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf: running: /usr/bin/autoconf autoreconf: running: /usr/bin/autoheader autoreconf: running: automake --add-missing --copy --no-force configure.ac:12: installing './ar-lib' configure.ac:12: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' autoreconf: Leaving directory `.' + . /etc/profile.d/modules.sh ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 66 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man::;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.6/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1\;/builddir/.local/bin:1\;/builddir/bin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/.local/bin:/builddir/bin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man:: ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.6/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1;/builddir/.local/bin:1;/builddir/bin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/.local/bin:/builddir/bin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + warnings='-Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for i686-redhat-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for i686-redhat-linux-gnu-ar... no checking for i686-redhat-linux-gnu-lib... no checking for i686-redhat-linux-gnu-link... no checking for ar... ar checking the archiver (ar) interface... ar checking for i686-redhat-linux-gnu-ar... ar checking the archiver (ar) interface... (cached) ar checking build system type... i686-redhat-linux-gnu checking host system type... i686-redhat-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-redhat-linux-gnu file names to i686-redhat-linux-gnu format... func_convert_file_noop checking how to convert i686-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for i686-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for i686-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-redhat-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for i686-redhat-linux-gnu-strip... no checking for strip... strip checking for i686-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for i686-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for i686-redhat-linux-gnu-g++... no checking for i686-redhat-linux-gnu-c++... no checking for i686-redhat-linux-gnu-gpp... no checking for i686-redhat-linux-gnu-aCC... no checking for i686-redhat-linux-gnu-CC... no checking for i686-redhat-linux-gnu-cxx... no checking for i686-redhat-linux-gnu-cc++... no checking for i686-redhat-linux-gnu-cl.exe... no checking for i686-redhat-linux-gnu-FCC... no checking for i686-redhat-linux-gnu-KCC... no checking for i686-redhat-linux-gnu-RCC... no checking for i686-redhat-linux-gnu-xlC_r... no checking for i686-redhat-linux-gnu-xlC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gawk... (cached) gawk checking for i686-redhat-linux-gnu-gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for floor... no checking for pow... no checking for rint... no checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strpbrk... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands + /usr/bin/make -O -j2 -C src make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network3.o `test -f 'network3.cpp' || echo './'`network3.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network.o `test -f 'network.cpp' || echo './'`network.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-misc.o `test -f 'util/misc.cpp' || echo './'`util/misc.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/allocate.lo util/mathutils/allocate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c -fPIC -DPIC -o util/mathutils/.libs/allocate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c -o util/mathutils/allocate.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/allocate.c: In function 'ALLOC_MATRIX': util/mathutils/allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable] register int i,j; ^ util/mathutils/allocate.c: In function 'IALLOC_MATRIX': util/mathutils/allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable] register int i,j; ^ util/mathutils/allocate.c: In function 'ZALLOC_MATRIX': util/mathutils/allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable] register int i,j; ^ In file included from util/mathutils/allocate.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cabs.lo util/mathutils/cabs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c -fPIC -DPIC -o util/mathutils/.libs/cabs.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c -o util/mathutils/cabs.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/cabs.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cadd.lo util/mathutils/cadd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c -fPIC -DPIC -o util/mathutils/.libs/cadd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c -o util/mathutils/cadd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/cadd.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cconj.lo util/mathutils/cconj.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c -fPIC -DPIC -o util/mathutils/.libs/cconj.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c -o util/mathutils/cconj.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/cconj.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cmult.lo util/mathutils/cmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c -fPIC -DPIC -o util/mathutils/.libs/cmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c -o util/mathutils/cmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/cmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/complex_zero.lo util/mathutils/complex_zero.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c -fPIC -DPIC -o util/mathutils/.libs/complex_zero.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c -o util/mathutils/complex_zero.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/complex_zero.c:2: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/copy_vector.lo util/mathutils/copy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c -fPIC -DPIC -o util/mathutils/.libs/copy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c -o util/mathutils/copy_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/copy_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cprob.lo util/mathutils/cprob.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c -fPIC -DPIC -o util/mathutils/.libs/cprob.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c -o util/mathutils/cprob.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/cprob.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/csub.lo util/mathutils/csub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c -fPIC -DPIC -o util/mathutils/.libs/csub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c -o util/mathutils/csub.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/csub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/dotp.lo util/mathutils/dotp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c -fPIC -DPIC -o util/mathutils/.libs/dotp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c -o util/mathutils/dotp.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/dotp.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/eigensystem.lo util/mathutils/eigensystem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c -fPIC -DPIC -o util/mathutils/.libs/eigensystem.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c -o util/mathutils/eigensystem.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/eigensystem.c:1: util/mathutils/eigensystem.c: In function 'SYM_EIGENSYSTEM': util/mathutils/eigensystem.c:27:11: warning: implicit declaration of function 'dsyev' [-Wimplicit-function-declaration] FNAME(dsyev)(&jobz, &uplo, &N, A[0], &N, evals, work, &lwork, &info); ^~~~~ util/mathutils/mathutils.h:18:20: note: in definition of macro 'FNAME' #define FNAME(fun) fun ^~~ util/mathutils/eigensystem.c: In function 'GEN_SYM_EIGENSYSTEM': util/mathutils/eigensystem.c:58:11: warning: implicit declaration of function 'dsygv' [-Wimplicit-function-declaration] FNAME(dsygv)(&itype, &jobz, &uplo, &N, A[0], &N, B[0], &N, evals, work, ^~~~~ util/mathutils/mathutils.h:18:20: note: in definition of macro 'FNAME' #define FNAME(fun) fun ^~~ At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/expi.lo util/mathutils/expi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c -fPIC -DPIC -o util/mathutils/.libs/expi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c -o util/mathutils/expi.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/expi.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-run_network.o `test -f 'run_network.cpp' || echo './'`run_network.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/gram_schmidt.lo util/mathutils/gram_schmidt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c -fPIC -DPIC -o util/mathutils/.libs/gram_schmidt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c -o util/mathutils/gram_schmidt.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/gram_schmidt.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c -o util/mathutils/herm_matrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/herm_matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_vector_mult.lo util/mathutils/herm_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c -o util/mathutils/herm_matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/herm_matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/icmult.lo util/mathutils/icmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c -fPIC -DPIC -o util/mathutils/.libs/icmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c -o util/mathutils/icmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/icmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/init.lo util/mathutils/init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c -fPIC -DPIC -o util/mathutils/.libs/init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c -o util/mathutils/init.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/init.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/integration.lo util/mathutils/integration.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c -fPIC -DPIC -o util/mathutils/.libs/integration.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c -o util/mathutils/integration.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/integration.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/linsolve.lo util/mathutils/linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c -fPIC -DPIC -o util/mathutils/.libs/linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c -o util/mathutils/linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/linsolve.c: In function 'LINSOLVE': util/mathutils/linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable] register int i,j; ^ util/mathutils/linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable] register int i,j; ^ In file included from util/mathutils/linsolve.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matherr.lo util/mathutils/matherr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c -fPIC -DPIC -o util/mathutils/.libs/matherr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c -o util/mathutils/matherr.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matherr.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_add.lo util/mathutils/matrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c -fPIC -DPIC -o util/mathutils/.libs/matrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c -o util/mathutils/matrix_add.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrix_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_elt.lo util/mathutils/matrix_elt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c -fPIC -DPIC -o util/mathutils/.libs/matrix_elt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c -o util/mathutils/matrix_elt.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrix_elt.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_mult.lo util/mathutils/matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c -o util/mathutils/matrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_sub.lo util/mathutils/matrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/matrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c -o util/mathutils/matrix_sub.o >/dev/null 2>&1 In file included from util/mathutils/matrix_sub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_transpose.lo util/mathutils/matrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/matrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c -o util/mathutils/matrix_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrix_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_vector_mult.lo util/mathutils/matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c -o util/mathutils/matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrixexp.lo util/mathutils/matrixexp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c -fPIC -DPIC -o util/mathutils/.libs/matrixexp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c -o util/mathutils/matrixexp.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrixexp.c:5: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/norm.lo util/mathutils/norm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c -fPIC -DPIC -o util/mathutils/.libs/norm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c -o util/mathutils/norm.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/norm.c: In function 'NORM': util/mathutils/norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable] double norm; ^~~~ In file included from util/mathutils/norm.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/minimum.lo util/mathutils/minimum.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c -fPIC -DPIC -o util/mathutils/.libs/minimum.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c -o util/mathutils/minimum.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/minimum.c: In function 'MIN_BRACKET': util/mathutils/minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable] double ulim,u,r,q,fu,dum; ^~~ In file included from util/mathutils/minimum.c:3: At top level: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ util/mathutils/minimum.c: In function 'MIN_FIND': util/mathutils/minimum.c:117:21: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] if (fabs(p) >= fabs(0.5*q*etemp) || p <= q*(a-x) || p >= q*(b-x)) ^~~~~~~~~~~~~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/normsq.lo util/mathutils/normsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c -fPIC -DPIC -o util/mathutils/.libs/normsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c -o util/mathutils/normsq.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/normsq.c: In function 'NORMSQ': util/mathutils/normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable] double norm; ^~~~ In file included from util/mathutils/normsq.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/project.lo util/mathutils/project.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c -fPIC -DPIC -o util/mathutils/.libs/project.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c -o util/mathutils/project.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/project.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/random.lo util/mathutils/random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c -fPIC -DPIC -o util/mathutils/.libs/random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c -o util/mathutils/random.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/random.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rcmult.lo util/mathutils/rcmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c -fPIC -DPIC -o util/mathutils/.libs/rcmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c -o util/mathutils/rcmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/rcmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rect_transpose.lo util/mathutils/rect_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c -fPIC -DPIC -o util/mathutils/.libs/rect_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c -o util/mathutils/rect_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/rect_transpose.c: In function 'RECT_TRANSPOSE': util/mathutils/rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable] double **At, *Aptr, *Atptr; ^~~~~ util/mathutils/rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable] double **At, *Aptr, *Atptr; ^~~~ In file included from util/mathutils/rect_transpose.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/roots.lo util/mathutils/roots.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c -fPIC -DPIC -o util/mathutils/.libs/roots.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c -o util/mathutils/roots.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/roots.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ util/mathutils/roots.c: In function 'ROOT_FIND': util/mathutils/roots.c:69:11: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] min2=fabs(e*q); ^~~~~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/scale_vector.lo util/mathutils/scale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c -fPIC -DPIC -o util/mathutils/.libs/scale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c -o util/mathutils/scale_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/scale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/runge-kutta.lo util/mathutils/runge-kutta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c -fPIC -DPIC -o util/mathutils/.libs/runge-kutta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c -o util/mathutils/runge-kutta.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/runge-kutta.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sum_vector.lo util/mathutils/sum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c -fPIC -DPIC -o util/mathutils/.libs/sum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c -o util/mathutils/sum_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/sum_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/splines.lo util/mathutils/splines.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c -fPIC -DPIC -o util/mathutils/.libs/splines.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c -o util/mathutils/splines.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/splines.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_linsolve.lo util/mathutils/sym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c -o util/mathutils/sym_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/sym_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c -o util/mathutils/sym_matrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/sym_matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sym_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c -o util/mathutils/sym_matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/sym_matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/svd.lo util/mathutils/svd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c -fPIC -DPIC -o util/mathutils/.libs/svd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c -o util/mathutils/svd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/svd.c:2: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sympos_linsolve.lo util/mathutils/sympos_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sympos_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c -o util/mathutils/sympos_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/sympos_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/test_transpose.lo util/mathutils/test_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c -fPIC -DPIC -o util/mathutils/.libs/test_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c -o util/mathutils/test_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/test_transpose.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] main() ^~~~ In file included from util/mathutils/test_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testdummy.lo util/mathutils/testdummy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c -fPIC -DPIC -o util/mathutils/.libs/testdummy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c -o util/mathutils/testdummy.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/testdummy.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] main(){ ^~~~ util/mathutils/testdummy.c: In function 'main': util/mathutils/testdummy.c:5:9: warning: unused variable 'incx' [-Wunused-variable] int incx=1; ^~~~ util/mathutils/testdummy.c:9:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &n); ^~~~~~~~~~~~~~~ util/mathutils/testdummy.c:15:2: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", x+i); ^~~~~~~~~~~~~~~~~ In file included from util/mathutils/testdummy.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testgram.lo util/mathutils/testgram.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c -fPIC -DPIC -o util/mathutils/.libs/testgram.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c -o util/mathutils/testgram.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/testgram.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] main(int argc, char *argv[]){ ^~~~ util/mathutils/testgram.c: In function 'main': util/mathutils/testgram.c:7:63: warning: unused variable 'V' [-Wunused-variable] double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^ util/mathutils/testgram.c:7:58: warning: unused variable 'w' [-Wunused-variable] double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^ util/mathutils/testgram.c:7:52: warning: unused variable 'UtU' [-Wunused-variable] double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^~~ util/mathutils/testgram.c:7:46: warning: unused variable 'Ut' [-Wunused-variable] double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^~ util/mathutils/testgram.c:5:7: warning: unused variable 'nr' [-Wunused-variable] int nr, n_run; ^~ In file included from util/mathutils/testgram.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testspline.lo util/mathutils/testspline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c -fPIC -DPIC -o util/mathutils/.libs/testspline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c -o util/mathutils/testspline.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/testspline.c:7:1: warning: return type defaults to 'int' [-Wimplicit-int] main() ^~~~ In file included from util/mathutils/testspline.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testsvd.lo util/mathutils/testsvd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c -fPIC -DPIC -o util/mathutils/.libs/testsvd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c -o util/mathutils/testsvd.o >/dev/null 2>&1 util/mathutils/testsvd.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] main(int argc, char *argv[]){ ^~~~ util/mathutils/testsvd.c: In function 'main': util/mathutils/testsvd.c:7:28: warning: unused variable 'GtG' [-Wunused-variable] double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^~~ util/mathutils/testsvd.c:7:22: warning: unused variable 'Gt' [-Wunused-variable] double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^~ util/mathutils/testsvd.c:7:17: warning: unused variable 'G' [-Wunused-variable] double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^ In file included from util/mathutils/testsvd.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_add.lo util/mathutils/vector_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c -fPIC -DPIC -o util/mathutils/.libs/vector_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c -o util/mathutils/vector_add.o >/dev/null 2>&1 In file included from util/mathutils/vector_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_dist.lo util/mathutils/vector_dist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c -fPIC -DPIC -o util/mathutils/.libs/vector_dist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c -o util/mathutils/vector_dist.o >/dev/null 2>&1 In file included from util/mathutils/vector_dist.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zcopy_vector.lo util/mathutils/zcopy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c -fPIC -DPIC -o util/mathutils/.libs/zcopy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c -o util/mathutils/zcopy_vector.o >/dev/null 2>&1 In file included from util/mathutils/zcopy_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotc.lo util/mathutils/zdotc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c -fPIC -DPIC -o util/mathutils/.libs/zdotc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c -o util/mathutils/zdotc.o >/dev/null 2>&1 In file included from util/mathutils/zdotc.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotu.lo util/mathutils/zdotu.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c -fPIC -DPIC -o util/mathutils/.libs/zdotu.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c -o util/mathutils/zdotu.o >/dev/null 2>&1 In file included from util/mathutils/zdotu.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c -o util/mathutils/zmatrix_add.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testutils.lo util/mathutils/testutils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c -fPIC -DPIC -o util/mathutils/.libs/testutils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c -o util/mathutils/testutils.o >/dev/null 2>&1 util/mathutils/testutils.c:6:1: warning: return type defaults to 'int' [-Wimplicit-int] main (int argc, char *argv[]) ^~~~ util/mathutils/testutils.c: In function 'main': util/mathutils/testutils.c:15:12: warning: unused variable 'z1' [-Wunused-variable] dcomplex z1; ^~ util/mathutils/testutils.c:10:7: warning: unused variable 'seed' [-Wunused-variable] int seed; ^~~~ util/mathutils/testutils.c:8:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ In file included from util/mathutils/testutils.c:2: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c -o util/mathutils/zmatrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c -o util/mathutils/zmatrix_sub.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_sub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c -o util/mathutils/zmatrix_transpose.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_vector_mult.lo util/mathutils/zmatrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c -o util/mathutils/zmatrix_vector_mult.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znorm.lo util/mathutils/znorm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c -fPIC -DPIC -o util/mathutils/.libs/znorm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c -o util/mathutils/znorm.o >/dev/null 2>&1 In file included from util/mathutils/znorm.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znormsq.lo util/mathutils/znormsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c -fPIC -DPIC -o util/mathutils/.libs/znormsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c -o util/mathutils/znormsq.o >/dev/null 2>&1 In file included from util/mathutils/znormsq.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zrscale_vector.lo util/mathutils/zrscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zrscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c -o util/mathutils/zrscale_vector.o >/dev/null 2>&1 In file included from util/mathutils/zrscale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zscale_vector.lo util/mathutils/zscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c -o util/mathutils/zscale_vector.o >/dev/null 2>&1 In file included from util/mathutils/zscale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsum_vector.lo util/mathutils/zsum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c -fPIC -DPIC -o util/mathutils/.libs/zsum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c -o util/mathutils/zsum_vector.o >/dev/null 2>&1 In file included from util/mathutils/zsum_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsym_linsolve.lo util/mathutils/zsym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/zsym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c -o util/mathutils/zsym_linsolve.o >/dev/null 2>&1 In file included from util/mathutils/zsym_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-function.o `test -f 'model/function.cpp' || echo './'`model/function.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-observable.o `test -f 'model/observable.cpp' || echo './'`model/observable.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-rateExpression.o `test -f 'model/rateExpression.cpp' || echo './'`model/rateExpression.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-simpleSpecies.o `test -f 'model/simpleSpecies.cpp' || echo './'`model/simpleSpecies.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-reaction.o `test -f 'model/reaction.cpp' || echo './'`model/reaction.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateElementary.o `test -f 'model/rateExpressions/rateElementary.cpp' || echo './'`model/rateExpressions/rateElementary.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateHill.o `test -f 'model/rateExpressions/rateHill.cpp' || echo './'`model/rateExpressions/rateHill.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMM.o `test -f 'model/rateExpressions/rateMM.cpp' || echo './'`model/rateExpressions/rateMM.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMuParser.o `test -f 'model/rateExpressions/rateMuParser.cpp' || echo './'`model/rateExpressions/rateMuParser.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateSaturation.o `test -f 'model/rateExpressions/rateSaturation.cpp' || echo './'`model/rateExpressions/rateSaturation.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-elementaryRxn.o `test -f 'model/reactions/elementaryRxn.cpp' || echo './'`model/reactions/elementaryRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-bioNetGenRxn.o `test -f 'model/reactions/bioNetGenRxn.cpp' || echo './'`model/reactions/bioNetGenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-functionalRxn.o `test -f 'model/reactions/functionalRxn.cpp' || echo './'`model/reactions/functionalRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-hillRxn.o `test -f 'model/reactions/hillRxn.cpp' || echo './'`model/reactions/hillRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-michaelisMentenRxn.o `test -f 'model/reactions/michaelisMentenRxn.cpp' || echo './'`model/reactions/michaelisMentenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-saturationRxn.o `test -f 'model/reactions/saturationRxn.cpp' || echo './'`model/reactions/saturationRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-firingGenerator.o `test -f 'pla/base/firingGenerator.cpp' || echo './'`pla/base/firingGenerator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/run_network-PLA.o `test -f 'pla/PLA.cpp' || echo './'`pla/PLA.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-postleapChecker.o `test -f 'pla/base/postleapChecker.cpp' || echo './'`pla/base/postleapChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-rxnClassifier.o `test -f 'pla/base/rxnClassifier.cpp' || echo './'`pla/base/rxnClassifier.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-tauCalculator.o `test -f 'pla/base/tauCalculator.cpp' || echo './'`pla/base/tauCalculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o `test -f 'pla/eRungeKutta/util/binomialCorrector_RK.cpp' || echo './'`pla/eRungeKutta/util/binomialCorrector_RK.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-aEff_Calculator.o `test -f 'pla/eRungeKutta/util/aEff_Calculator.cpp' || echo './'`pla/eRungeKutta/util/aEff_Calculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-butcherTableau.o `test -f 'pla/eRungeKutta/util/butcherTableau.cpp' || echo './'`pla/eRungeKutta/util/butcherTableau.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_FG.o `test -f 'pla/fEuler/fEuler_FG.cpp' || echo './'`pla/fEuler/fEuler_FG.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapRB_TC.o `test -f 'pla/fEuler/fEulerPreleapRB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapRB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapSB_TC.o `test -f 'pla/fEuler/fEulerPreleapSB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapSB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_PL.o `test -f 'pla/fEuler/fEulerRB_PL.cpp' || echo './'`pla/fEuler/fEulerRB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_TC_PL.o `test -f 'pla/fEuler/fEulerRB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerRB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_RC.o `test -f 'pla/fEuler/fEuler_RC.cpp' || echo './'`pla/fEuler/fEuler_RC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_PL.o `test -f 'pla/fEuler/fEulerSB_PL.cpp' || echo './'`pla/fEuler/fEulerSB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_TC_PL.o `test -f 'pla/fEuler/fEulerSB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerSB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-negPopChecker.o `test -f 'pla/util/negPopChecker.cpp' || echo './'`pla/util/negPopChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-g_Getter.o `test -f 'pla/util/g_Getter.cpp' || echo './'`pla/util/g_Getter.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-preleap_TC.o `test -f 'pla/util/preleap_TC.cpp' || echo './'`pla/util/preleap_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-rbChecker.o `test -f 'pla/util/rbChecker.cpp' || echo './'`pla/util/rbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-sbChecker.o `test -f 'pla/util/sbChecker.cpp' || echo './'`pla/util/sbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-fixed_TC.o `test -f 'pla/util/fixed_TC.cpp' || echo './'`pla/util/fixed_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-rand.o `test -f 'util/rand.cpp' || echo './'`util/rand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/MTrand/run_network-mtrand.o `test -f 'util/MTrand/mtrand.cpp' || echo './'`util/MTrand/mtrand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/rand2/run_network-rand2.o `test -f 'util/rand2/rand2.cpp' || echo './'`util/rand2/rand2.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-conversion.o `test -f 'util/conversion.cpp' || echo './'`util/conversion.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libmathutils.la util/mathutils/allocate.lo util/mathutils/cabs.lo util/mathutils/cadd.lo util/mathutils/cconj.lo util/mathutils/cmult.lo util/mathutils/complex_zero.lo util/mathutils/copy_vector.lo util/mathutils/cprob.lo util/mathutils/csub.lo util/mathutils/dotp.lo util/mathutils/eigensystem.lo util/mathutils/expi.lo util/mathutils/gram_schmidt.lo util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_vector_mult.lo util/mathutils/icmult.lo util/mathutils/init.lo util/mathutils/integration.lo util/mathutils/linsolve.lo util/mathutils/matherr.lo util/mathutils/matrix_add.lo util/mathutils/matrix_elt.lo util/mathutils/matrix_mult.lo util/mathutils/matrix_sub.lo util/mathutils/matrix_transpose.lo util/mathutils/matrix_vector_mult.lo util/mathutils/matrixexp.lo util/mathutils/minimum.lo util/mathutils/norm.lo util/mathutils/normsq.lo util/mathutils/project.lo util/mathutils/random.lo util/mathutils/rcmult.lo util/mathutils/rect_transpose.lo util/mathutils/roots.lo util/mathutils/runge-kutta.lo util/mathutils/scale_vector.lo util/mathutils/splines.lo util/mathutils/sum_vector.lo util/mathutils/svd.lo util/mathutils/sym_linsolve.lo util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sympos_linsolve.lo util/mathutils/test_transpose.lo util/mathutils/testdummy.lo util/mathutils/testgram.lo util/mathutils/testspline.lo util/mathutils/testsvd.lo util/mathutils/testutils.lo util/mathutils/vector_add.lo util/mathutils/vector_dist.lo util/mathutils/zcopy_vector.lo util/mathutils/zdotc.lo util/mathutils/zdotu.lo util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_vector_mult.lo util/mathutils/znorm.lo util/mathutils/znormsq.lo util/mathutils/zrscale_vector.lo util/mathutils/zscale_vector.lo util/mathutils/zsum_vector.lo util/mathutils/zsym_linsolve.lo libtool: link: ar cru .libs/libmathutils.a util/mathutils/.libs/allocate.o util/mathutils/.libs/cabs.o util/mathutils/.libs/cadd.o util/mathutils/.libs/cconj.o util/mathutils/.libs/cmult.o util/mathutils/.libs/complex_zero.o util/mathutils/.libs/copy_vector.o util/mathutils/.libs/cprob.o util/mathutils/.libs/csub.o util/mathutils/.libs/dotp.o util/mathutils/.libs/eigensystem.o util/mathutils/.libs/expi.o util/mathutils/.libs/gram_schmidt.o util/mathutils/.libs/herm_matrix_mult.o util/mathutils/.libs/herm_matrix_vector_mult.o util/mathutils/.libs/icmult.o util/mathutils/.libs/init.o util/mathutils/.libs/integration.o util/mathutils/.libs/linsolve.o util/mathutils/.libs/matherr.o util/mathutils/.libs/matrix_add.o util/mathutils/.libs/matrix_elt.o util/mathutils/.libs/matrix_mult.o util/mathutils/.libs/matrix_sub.o util/mathutils/.libs/matrix_transpose.o util/mathutils/.libs/matrix_vector_mult.o util/mathutils/.libs/matrixexp.o util/mathutils/.libs/minimum.o util/mathutils/.libs/norm.o util/mathutils/.libs/normsq.o util/mathutils/.libs/project.o util/mathutils/.libs/random.o util/mathutils/.libs/rcmult.o util/mathutils/.libs/rect_transpose.o util/mathutils/.libs/roots.o util/mathutils/.libs/runge-kutta.o util/mathutils/.libs/scale_vector.o util/mathutils/.libs/splines.o util/mathutils/.libs/sum_vector.o util/mathutils/.libs/svd.o util/mathutils/.libs/sym_linsolve.o util/mathutils/.libs/sym_matrix_mult.o util/mathutils/.libs/sym_matrix_vector_mult.o util/mathutils/.libs/sympos_linsolve.o util/mathutils/.libs/test_transpose.o util/mathutils/.libs/testdummy.o util/mathutils/.libs/testgram.o util/mathutils/.libs/testspline.o util/mathutils/.libs/testsvd.o util/mathutils/.libs/testutils.o util/mathutils/.libs/vector_add.o util/mathutils/.libs/vector_dist.o util/mathutils/.libs/zcopy_vector.o util/mathutils/.libs/zdotc.o util/mathutils/.libs/zdotu.o util/mathutils/.libs/zmatrix_add.o util/mathutils/.libs/zmatrix_mult.o util/mathutils/.libs/zmatrix_sub.o util/mathutils/.libs/zmatrix_transpose.o util/mathutils/.libs/zmatrix_vector_mult.o util/mathutils/.libs/znorm.o util/mathutils/.libs/znormsq.o util/mathutils/.libs/zrscale_vector.o util/mathutils/.libs/zscale_vector.o util/mathutils/.libs/zsum_vector.o util/mathutils/.libs/zsym_linsolve.o libtool: link: ranlib .libs/libmathutils.a libtool: link: ( cd ".libs" && rm -f "libmathutils.la" && ln -s "../libmathutils.la" "libmathutils.la" ) make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o libmathutils.la -lmuparser -lsundials_nvecserial -lsundials_cvode libtool: link: g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z -Wl,relro -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o ./.libs/libmathutils.a -lmuparser -lsundials_nvecserial -lsundials_cvode make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' + . /etc/profile.d/modules.sh ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 66 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module unload mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man::;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1\;/builddir/.local/bin:1\;/builddir/bin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/.local/bin:/builddir/bin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man:: ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1;/builddir/.local/bin:1;/builddir/bin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/.local/bin:/builddir/bin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ~/build/BUILD/bionetgen-BioNetGen-2.4.0 ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + popd + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.WZN6z8 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386 ++ dirname /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386 + cd bionetgen-BioNetGen-2.4.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386 'INSTALL=/usr/bin/install -p' -C bng2/Network3/src make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -p run_network '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/bin' libtool: install: /usr/bin/install -p run_network /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/bin/run_network make[1]: Nothing to be done for 'install-data-am'. make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' + mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/perl5/vendor_perl/BioNetGen mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/perl5' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/perl5/vendor_perl' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/perl5/vendor_perl/BioNetGen' + cp -r bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/perl5/vendor_perl/BioNetGen/ + cp bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/perl5/vendor_perl/BioNetGen/ + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2.4.0-3.fc28 --unique-debug-suffix -2.4.0-3.fc28.i386 --unique-debug-src-base bionetgen-2.4.0-3.fc28.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-BioNetGen-2.4.0 extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/bin/run_network /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 967 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs '' '' /usr/share/lmod/lmod/init/bash: line 15: __lmod_vx: unbound variable Processing files: bionetgen-2.4.0-3.fc28.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.oLCrvS + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 + DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/doc/bionetgen + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/doc/bionetgen + cp -pr README.md /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/doc/bionetgen + cp -pr bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/doc/bionetgen + cp -pr bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/doc/bionetgen + cp -pr bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/doc/bionetgen + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.E7aCsC + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 + LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/licenses/bionetgen + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/licenses/bionetgen + cp -pr LICENSE /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386/usr/share/licenses/bionetgen + exit 0 Provides: bionetgen = 2.4.0-3.fc28 bionetgen(x86-32) = 2.4.0-3.fc28 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libm.so.6 libm.so.6(GLIBC_2.0) libmuparser.so.2 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) libsundials_cvode.so.3 libsundials_nvecserial.so.3 rtld(GNU_HASH) Processing files: bionetgen-perl-2.4.0-3.fc28.noarch Provides: bionetgen-perl = 2.4.0-3.fc28 perl(Viz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings) Processing files: bionetgen-debugsource-2.4.0-3.fc28.i686 Provides: bionetgen-debugsource = 2.4.0-3.fc28 bionetgen-debugsource(x86-32) = 2.4.0-3.fc28 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bionetgen-debuginfo-2.4.0-3.fc28.i686 Provides: bionetgen-debuginfo = 2.4.0-3.fc28 bionetgen-debuginfo(x86-32) = 2.4.0-3.fc28 debuginfo(build-id) = dde36c1d73926632b0a8d777d1cdf0b3edee5d63 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bionetgen-debugsource(x86-32) = 2.4.0-3.fc28 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386 Wrote: /builddir/build/RPMS/bionetgen-2.4.0-3.fc28.i686.rpm Wrote: /builddir/build/RPMS/bionetgen-perl-2.4.0-3.fc28.noarch.rpm Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.4.0-3.fc28.i686.rpm Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.4.0-3.fc28.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.70ilLs + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc28.i386 + exit 0 Finish: rpmbuild bionetgen-2.4.0-3.fc28.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/829451-fedora-28-i386-1543191632.692787/root/var/log/dnf.log /var/lib/mock/829451-fedora-28-i386-1543191632.692787/root/var/log/dnf.librepo.log /var/lib/mock/829451-fedora-28-i386-1543191632.692787/root/var/log/dnf.rpm.log Finish: build phase for bionetgen-2.4.0-3.fc28.src.rpm INFO: Done(/var/lib/copr-rpmbuild/results/bionetgen-2.4.0-3.fc28.src.rpm) Config(child) 1 minutes 49 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 829451 --chroot fedora-rawhide-i386 --detached default Version: 0.22 Task: {'build_id': 829451, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-i386', 'enable_net': False, 'fetch_sources_only': True, 'git_hash': '129539770a497b5ac72c94a12939573d4d5d6e9e', 'git_repo': '@scitech/openmpi4.0/bionetgen', 'memory_reqs': 2048, 'package_name': 'bionetgen', 'package_version': '2.4.0-3.fc30', 'project_dirname': 'openmpi4.0', 'project_name': 'openmpi4.0', 'project_owner': '@scitech', 'repos': [{'id': 'copr_base', 'name': 'Copr repository', 'url': 'https://copr-be.cloud.fedoraproject.org/results/@scitech/openmpi4.0/fedora-rawhide-i386/'}], 'source_json': {'clone_url': 'https://copr-dist-git.fedorainfracloud.org/git/@scitech/openmpi4.0/bionetgen.git', 'committish': '129539770a497b5ac72c94a12939573d4d5d6e9e'}, 'source_type': 8, 'submitter': 'orion', 'task_id': '829451-fedora-rawhide-i386', 'timeout': 64800, 'use_bootstrap_container': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@scitech/openmpi4.0/bionetgen.git /tmp/tmpkpah0njz/bionetgen --depth 500 --no-single-branch cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@scitech/openmpi4.0/bionetgen.git', '/tmp/tmpkpah0njz/bionetgen', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/tmp/tmpkpah0njz/bionetgen'... Running: git checkout 129539770a497b5ac72c94a12939573d4d5d6e9e cmd: ['git', 'checkout', '129539770a497b5ac72c94a12939573d4d5d6e9e'] cwd: /tmp/tmpkpah0njz/bionetgen rc: 0 stdout: stderr: Note: checking out '129539770a497b5ac72c94a12939573d4d5d6e9e'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 1295397 automatic import of bionetgen 2.4.0-3.fc30 Running: cp -r . /tmp/tmpck9hps8h cmd: ['cp', '-r', '.', '/tmp/tmpck9hps8h'] cwd: /tmp/tmpkpah0njz/bionetgen rc: 0 stdout: stderr: Generated rpkg config: [rpkg] preprocess_spec = True # auto-packing is deprecated: auto_pack = True [git] lookaside = https://copr-dist-git.fedorainfracloud.org/repo/pkgs/%(ns2)s/%(ns1)s/%(name)s/%(filename)s/%(hashtype)s/%(hash)s/%(filename)s anongiturl = https://copr-dist-git.fedorainfracloud.org/git/%(module)s Writing config into /tmp/tmpkpah0njz/.config/rpkg.conf Running: rpkg -C /tmp/tmpkpah0njz/.config/rpkg.conf sources --outdir /tmp/tmpck9hps8h cmd: ['rpkg', '-C', '/tmp/tmpkpah0njz/.config/rpkg.conf', 'sources', '--outdir', '/tmp/tmpck9hps8h'] cwd: /tmp/tmpkpah0njz/bionetgen rc: 0 stdout: Downloading bionetgen-BioNetGen-2.4.0.tar.gz from lookaside cache at copr-dist-git.fedorainfracloud.org stderr: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running: unbuffer /usr/bin/mock --buildsrpm --spec /tmp/tmpck9hps8h/bionetgen.spec --sources /tmp/tmpck9hps8h --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --define %_disable_source_fetch 0 --uniqueext 1543191756.544420 -r child WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.13 starting (python version = 3.6.5)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(/tmp/tmpck9hps8h/bionetgen.spec) Config(829451-fedora-rawhide-i386) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/829451-fedora-rawhide-i386-1543191756.544420/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled HW Info plugin Mock Version: 1.4.13 INFO: Mock Version: 1.4.13 Start: dnf install 'Copr repository' 741 kB/s | 51 kB 00:00 fedora 76 MB/s | 57 MB 00:00 Last metadata expiration check: 0:00:00 ago on Mon 26 Nov 2018 12:22:38 AM UTC. Dependencies resolved. ================================================================================ Group Packages ================================================================================ Marking packages as installed by the group: @Buildsystem building group coreutils xz util-linux findutils info redhat-rpm-config patch diffutils tar bzip2 sed shadow-utils grep bash gawk gzip cpio fedora-release make unzip which rpm-build ================================================================================ Package Arch Version Repository Size ================================================================================ Installing group packages: bash i686 4.4.23-5.fc30 fedora 1.5 M bzip2 i686 1.0.6-28.fc29 fedora 52 k coreutils i686 8.30-8.fc30 fedora 1.1 M cpio i686 2.12-9.fc29 fedora 258 k diffutils i686 3.6-5.fc29 fedora 358 k fedora-release noarch 30-0.14 fedora 9.1 k findutils i686 1:4.6.0-21.fc30 fedora 514 k gawk i686 4.2.1-3.fc29 fedora 1.1 M grep i686 3.1-8.fc29 fedora 256 k gzip i686 1.9-7.fc29 fedora 154 k info i686 6.5-11.fc30 fedora 181 k make i686 1:4.2.1-10.fc29 fedora 494 k patch i686 2.7.6-7.fc30 fedora 137 k redhat-rpm-config noarch 125-1.fc30 fedora 59 k rpm-build i686 4.14.2.1-3.fc30 fedora 114 k sed i686 4.5-2.fc29 fedora 292 k shadow-utils i686 2:4.6-5.fc30 fedora 1.1 M tar i686 2:1.30-6.fc29 fedora 829 k unzip i686 6.0-42.fc30 fedora 174 k util-linux i686 2.33-0.1.fc30 fedora 2.4 M which i686 2.21-11.fc29 fedora 42 k xz i686 5.2.4-4.fc30 fedora 148 k Installing dependencies: audit-libs i686 3.0-0.4.20180831git0047a6c.fc30 fedora 112 k basesystem noarch 11-6.fc29 fedora 6.9 k binutils i686 2.31.1-16.fc30 fedora 5.8 M brotli i686 1.0.5-1.fc29 fedora 321 k bzip2-libs i686 1.0.6-28.fc29 fedora 40 k ca-certificates noarch 2018.2.26-2.fc30 fedora 385 k chkconfig i686 1.11-2.fc30 fedora 170 k coreutils-common i686 8.30-8.fc30 fedora 1.9 M cracklib i686 2.9.6-17.fc30 fedora 77 k crypto-policies noarch 20181122-1.git70769d9.fc30 fedora 46 k curl i686 7.62.0-1.fc30 fedora 315 k cyrus-sasl-lib i686 2.1.27-0.4rc7.fc30 fedora 97 k dwz i686 0.12-9.fc29 fedora 109 k efi-srpm-macros noarch 4-1.fc30 fedora 22 k elfutils i686 0.175-1.fc30 fedora 313 k elfutils-default-yama-scope noarch 0.175-1.fc30 fedora 16 k elfutils-libelf i686 0.175-1.fc30 fedora 184 k elfutils-libs i686 0.175-1.fc30 fedora 298 k expat i686 2.2.6-1.fc30 fedora 99 k fedora-gpg-keys noarch 30-0.2 fedora 99 k fedora-release-common noarch 30-0.14 fedora 17 k fedora-repos noarch 30-0.2 fedora 8.9 k fedora-repos-rawhide noarch 30-0.2 fedora 8.1 k file i686 5.34-6.fc30 fedora 49 k file-libs i686 5.34-6.fc30 fedora 532 k filesystem i686 3.9-2.fc29 fedora 1.1 M fpc-srpm-macros noarch 1.1-5.fc29 fedora 7.5 k gc i686 7.6.4-4.fc29 fedora 105 k gdb-headless i686 8.2.50.20181114-9.fc30 fedora 3.7 M gdbm-libs i686 1:1.18-1.fc30 fedora 53 k ghc-srpm-macros noarch 1.4.2-8.fc29 fedora 7.4 k glib2 i686 2.58.1-2.fc30 fedora 2.6 M glibc i686 2.28.9000-19.fc30 fedora 3.6 M glibc-all-langpacks i686 2.28.9000-19.fc30 fedora 25 M glibc-common i686 2.28.9000-19.fc30 fedora 801 k gmp i686 1:6.1.2-8.fc29 fedora 270 k gnat-srpm-macros noarch 4-4.fc30 fedora 7.9 k go-srpm-macros noarch 2-18.fc29 fedora 11 k guile i686 5:2.0.14-12.fc29 fedora 3.5 M keyutils-libs i686 1.6-1.fc30 fedora 30 k krb5-libs i686 1.17-1.beta1.1.fc30 fedora 767 k libacl i686 2.2.53-2.fc29 fedora 27 k libarchive i686 3.3.3-1.fc30 fedora 382 k libatomic_ops i686 7.6.6-1.fc29 fedora 34 k libattr i686 2.4.48-4.fc30 fedora 17 k libbabeltrace i686 1.5.6-1.fc29 fedora 219 k libblkid i686 2.33-0.1.fc30 fedora 160 k libcap i686 2.25-12.fc29 fedora 50 k libcap-ng i686 0.7.9-5.fc30 fedora 27 k libcom_err i686 1.44.4-1.fc30 fedora 27 k libcurl i686 7.62.0-1.fc30 fedora 280 k libdb i686 5.3.28-34.fc30 fedora 807 k libdb-utils i686 5.3.28-34.fc30 fedora 133 k libfdisk i686 2.33-0.1.fc30 fedora 212 k libffi i686 3.1-18.fc29 fedora 31 k libgcc i686 8.2.1-5.fc30 fedora 102 k libgcrypt i686 1.8.4-1.fc30 fedora 417 k libgpg-error i686 1.31-2.fc29 fedora 241 k libidn2 i686 2.0.5-2.fc29 fedora 88 k libipt i686 2.0-1.fc30 fedora 60 k libmetalink i686 0.1.3-7.fc29 fedora 31 k libmount i686 2.33-0.1.fc30 fedora 180 k libnghttp2 i686 1.35.0-1.fc30 fedora 75 k libnsl2 i686 1.2.0-3.20180605git4a062cf.fc30 fedora 57 k libpkgconf i686 1.5.3-2.fc29 fedora 37 k libpsl i686 0.20.2-5.fc29 fedora 59 k libpwquality i686 1.4.0-11.fc30 fedora 97 k libselinux i686 2.8-5.fc30 fedora 85 k libsemanage i686 2.8-6.fc30 fedora 118 k libsepol i686 2.8-3.fc30 fedora 307 k libsigsegv i686 2.11-6.fc29 fedora 26 k libsmartcols i686 2.33-0.1.fc30 fedora 115 k libssh i686 0.8.5-1.fc30 fedora 229 k libstdc++ i686 8.2.1-5.fc30 fedora 492 k libtasn1 i686 4.13-6.fc30 fedora 70 k libtirpc i686 1.1.4-2.rc2.fc30 fedora 105 k libtool-ltdl i686 2.4.6-27.fc30 fedora 36 k libunistring i686 0.9.10-4.fc29 fedora 423 k libutempter i686 1.1.6-15.fc29 fedora 26 k libuuid i686 2.33-0.1.fc30 fedora 27 k libverto i686 0.3.0-6.fc29 fedora 22 k libxcrypt i686 4.4.0-1.fc30 fedora 120 k libxml2 i686 2.9.8-4.fc29 fedora 692 k libzstd i686 1.3.6-1.fc30 fedora 243 k lua-libs i686 5.3.5-2.fc29 fedora 127 k lz4-libs i686 1.8.2-2.fc29 fedora 63 k mpfr i686 3.1.6-3.fc30 fedora 220 k ncurses i686 6.1-8.20180923.fc30 fedora 363 k ncurses-base noarch 6.1-8.20180923.fc30 fedora 58 k ncurses-libs i686 6.1-8.20180923.fc30 fedora 305 k nim-srpm-macros noarch 1-3.fc29 fedora 8.0 k ocaml-srpm-macros noarch 5-4.fc29 fedora 7.8 k openblas-srpm-macros noarch 2-4.fc29 fedora 7.2 k openldap i686 2.4.46-10.fc30 fedora 299 k openssl-libs i686 1:1.1.1-7.fc30 fedora 1.3 M p11-kit i686 0.23.14-1.fc30 fedora 236 k p11-kit-trust i686 0.23.14-1.fc30 fedora 127 k pam i686 1.3.1-9.fc30 fedora 649 k pcre i686 8.42-5.fc30 fedora 186 k pcre2 i686 10.32-4.fc30 fedora 237 k perl-srpm-macros noarch 1-28.fc29 fedora 8.1 k pkgconf i686 1.5.3-2.fc29 fedora 39 k pkgconf-m4 noarch 1.5.3-2.fc29 fedora 17 k pkgconf-pkg-config i686 1.5.3-2.fc29 fedora 15 k popt i686 1.16-16.fc30 fedora 57 k publicsuffix-list-dafsa noarch 20180723-1.fc29 fedora 54 k python-pip-wheel noarch 18.1-1.fc30 fedora 1.2 M python-setuptools-wheel noarch 40.4.3-1.fc30 fedora 274 k python-srpm-macros noarch 3-39.fc30 fedora 12 k python3-libs i686 3.7.1-2.fc30 fedora 7.9 M qt5-srpm-macros noarch 5.11.2-1.fc30 fedora 9.2 k readline i686 7.0-12.fc29 fedora 196 k rpm i686 4.14.2.1-3.fc30 fedora 486 k rpm-build-libs i686 4.14.2.1-3.fc30 fedora 101 k rpm-libs i686 4.14.2.1-3.fc30 fedora 300 k rust-srpm-macros noarch 6-1.fc30 fedora 8.4 k setup noarch 2.12.3-1.fc30 fedora 148 k sqlite-libs i686 3.25.2-1.fc30 fedora 577 k systemd-libs i686 239-9.git9f3aed1.fc30 fedora 490 k tzdata noarch 2018g-1.fc30 fedora 425 k xz-libs i686 5.2.4-4.fc30 fedora 92 k zip i686 3.0-23.fc29 fedora 268 k zlib i686 1.2.11-14.fc30 fedora 91 k zstd i686 1.3.6-1.fc30 fedora 349 k Transaction Summary ================================================================================ Install 146 Packages Total download size: 88 M Installed size: 443 M Downloading Packages: (1/146): diffutils-3.6-5.fc29.i686.rpm 6.0 MB/s | 358 kB 00:00 (2/146): gzip-1.9-7.fc29.i686.rpm 17 MB/s | 154 kB 00:00 (3/146): shadow-utils-4.6-5.fc30.i686.rpm 15 MB/s | 1.1 MB 00:00 (4/146): make-4.2.1-10.fc29.i686.rpm 22 MB/s | 494 kB 00:00 (5/146): gawk-4.2.1-3.fc29.i686.rpm 8.1 MB/s | 1.1 MB 00:00 (6/146): util-linux-2.33-0.1.fc30.i686.rpm 27 MB/s | 2.4 MB 00:00 (7/146): redhat-rpm-config-125-1.fc30.noarch.rp 3.7 MB/s | 59 kB 00:00 (8/146): bash-4.4.23-5.fc30.i686.rpm 23 MB/s | 1.5 MB 00:00 (9/146): fedora-release-30-0.14.noarch.rpm 846 kB/s | 9.1 kB 00:00 (10/146): rpm-build-4.14.2.1-3.fc30.i686.rpm 10 MB/s | 114 kB 00:00 (11/146): findutils-4.6.0-21.fc30.i686.rpm 19 MB/s | 514 kB 00:00 (12/146): which-2.21-11.fc29.i686.rpm 4.1 MB/s | 42 kB 00:00 (13/146): grep-3.1-8.fc29.i686.rpm 13 MB/s | 256 kB 00:00 (14/146): sed-4.5-2.fc29.i686.rpm 8.4 MB/s | 292 kB 00:00 (15/146): patch-2.7.6-7.fc30.i686.rpm 9.5 MB/s | 137 kB 00:00 (16/146): info-6.5-11.fc30.i686.rpm 12 MB/s | 181 kB 00:00 (17/146): unzip-6.0-42.fc30.i686.rpm 12 MB/s | 174 kB 00:00 (18/146): cpio-2.12-9.fc29.i686.rpm 19 MB/s | 258 kB 00:00 (19/146): xz-5.2.4-4.fc30.i686.rpm 9.3 MB/s | 148 kB 00:00 (20/146): bzip2-1.0.6-28.fc29.i686.rpm 4.8 MB/s | 52 kB 00:00 (21/146): coreutils-8.30-8.fc30.i686.rpm 22 MB/s | 1.1 MB 00:00 (22/146): tar-1.30-6.fc29.i686.rpm 9.8 MB/s | 829 kB 00:00 (23/146): filesystem-3.9-2.fc29.i686.rpm 19 MB/s | 1.1 MB 00:00 (24/146): gmp-6.1.2-8.fc29.i686.rpm 7.1 MB/s | 270 kB 00:00 (25/146): libsigsegv-2.11-6.fc29.i686.rpm 2.3 MB/s | 26 kB 00:00 (26/146): readline-7.0-12.fc29.i686.rpm 9.5 MB/s | 196 kB 00:00 (27/146): mpfr-3.1.6-3.fc30.i686.rpm 5.8 MB/s | 220 kB 00:00 (28/146): audit-libs-3.0-0.4.20180831git0047a6c 6.8 MB/s | 112 kB 00:00 (29/146): libacl-2.2.53-2.fc29.i686.rpm 1.6 MB/s | 27 kB 00:00 (30/146): libattr-2.4.48-4.fc30.i686.rpm 1.3 MB/s | 17 kB 00:00 (31/146): libselinux-2.8-5.fc30.i686.rpm 4.8 MB/s | 85 kB 00:00 (32/146): libsemanage-2.8-6.fc30.i686.rpm 6.5 MB/s | 118 kB 00:00 (33/146): setup-2.12.3-1.fc30.noarch.rpm 8.0 MB/s | 148 kB 00:00 (34/146): libxcrypt-4.4.0-1.fc30.i686.rpm 4.1 MB/s | 120 kB 00:00 (35/146): glibc-2.28.9000-19.fc30.i686.rpm 21 MB/s | 3.6 MB 00:00 (36/146): libcap-ng-0.7.9-5.fc30.i686.rpm 1.3 MB/s | 27 kB 00:00 (37/146): libblkid-2.33-0.1.fc30.i686.rpm 4.1 MB/s | 160 kB 00:00 (38/146): libfdisk-2.33-0.1.fc30.i686.rpm 12 MB/s | 212 kB 00:00 (39/146): libsmartcols-2.33-0.1.fc30.i686.rpm 6.3 MB/s | 115 kB 00:00 (40/146): libmount-2.33-0.1.fc30.i686.rpm 5.3 MB/s | 180 kB 00:00 (41/146): libutempter-1.1.6-15.fc29.i686.rpm 1.5 MB/s | 26 kB 00:00 (42/146): libuuid-2.33-0.1.fc30.i686.rpm 3.6 MB/s | 27 kB 00:00 (43/146): pam-1.3.1-9.fc30.i686.rpm 45 MB/s | 649 kB 00:00 (44/146): ncurses-libs-6.1-8.20180923.fc30.i686 18 MB/s | 305 kB 00:00 (45/146): zlib-1.2.11-14.fc30.i686.rpm 26 MB/s | 91 kB 00:00 (46/146): systemd-libs-239-9.git9f3aed1.fc30.i6 26 MB/s | 490 kB 00:00 (47/146): dwz-0.12-9.fc29.i686.rpm 21 MB/s | 109 kB 00:00 (48/146): efi-srpm-macros-4-1.fc30.noarch.rpm 7.4 MB/s | 22 kB 00:00 (49/146): file-5.34-6.fc30.i686.rpm 18 MB/s | 49 kB 00:00 (50/146): fpc-srpm-macros-1.1-5.fc29.noarch.rpm 2.8 MB/s | 7.5 kB 00:00 (51/146): ghc-srpm-macros-1.4.2-8.fc29.noarch.r 2.8 MB/s | 7.4 kB 00:00 (52/146): gnat-srpm-macros-4-4.fc30.noarch.rpm 2.9 MB/s | 7.9 kB 00:00 (53/146): go-srpm-macros-2-18.fc29.noarch.rpm 4.7 MB/s | 11 kB 00:00 (54/146): nim-srpm-macros-1-3.fc29.noarch.rpm 2.7 MB/s | 8.0 kB 00:00 (55/146): ocaml-srpm-macros-5-4.fc29.noarch.rpm 3.5 MB/s | 7.8 kB 00:00 (56/146): openblas-srpm-macros-2-4.fc29.noarch. 2.7 MB/s | 7.2 kB 00:00 (57/146): perl-srpm-macros-1-28.fc29.noarch.rpm 3.3 MB/s | 8.1 kB 00:00 (58/146): python-srpm-macros-3-39.fc30.noarch.r 5.0 MB/s | 12 kB 00:00 (59/146): qt5-srpm-macros-5.11.2-1.fc30.noarch. 3.8 MB/s | 9.2 kB 00:00 (60/146): rust-srpm-macros-6-1.fc30.noarch.rpm 1.7 MB/s | 8.4 kB 00:00 (61/146): rpm-4.14.2.1-3.fc30.i686.rpm 49 MB/s | 486 kB 00:00 (62/146): zip-3.0-23.fc29.i686.rpm 44 MB/s | 268 kB 00:00 (63/146): fedora-release-common-30-0.14.noarch. 4.5 MB/s | 17 kB 00:00 (64/146): elfutils-0.175-1.fc30.i686.rpm 23 MB/s | 313 kB 00:00 (65/146): elfutils-libelf-0.175-1.fc30.i686.rpm 19 MB/s | 184 kB 00:00 (66/146): elfutils-libs-0.175-1.fc30.i686.rpm 25 MB/s | 298 kB 00:00 (67/146): guile-2.0.14-12.fc29.i686.rpm 40 MB/s | 3.5 MB 00:00 (68/146): pkgconf-pkg-config-1.5.3-2.fc29.i686. 3.7 MB/s | 15 kB 00:00 (69/146): popt-1.16-16.fc30.i686.rpm 8.6 MB/s | 57 kB 00:00 (70/146): rpm-build-libs-4.14.2.1-3.fc30.i686.r 14 MB/s | 101 kB 00:00 (71/146): rpm-libs-4.14.2.1-3.fc30.i686.rpm 24 MB/s | 300 kB 00:00 (72/146): zstd-1.3.6-1.fc30.i686.rpm 23 MB/s | 349 kB 00:00 (73/146): pcre-8.42-5.fc30.i686.rpm 17 MB/s | 186 kB 00:00 (74/146): binutils-2.31.1-16.fc30.i686.rpm 44 MB/s | 5.8 MB 00:00 (75/146): bzip2-libs-1.0.6-28.fc29.i686.rpm 1.6 MB/s | 40 kB 00:00 (76/146): libcap-2.25-12.fc29.i686.rpm 7.3 MB/s | 50 kB 00:00 (77/146): ncurses-6.1-8.20180923.fc30.i686.rpm 22 MB/s | 363 kB 00:00 (78/146): gdb-headless-8.2.50.20181114-9.fc30.i 26 MB/s | 3.7 MB 00:00 (79/146): coreutils-common-8.30-8.fc30.i686.rpm 33 MB/s | 1.9 MB 00:00 (80/146): xz-libs-5.2.4-4.fc30.i686.rpm 9.8 MB/s | 92 kB 00:00 (81/146): basesystem-11-6.fc29.noarch.rpm 2.5 MB/s | 6.9 kB 00:00 (82/146): openssl-libs-1.1.1-7.fc30.i686.rpm 29 MB/s | 1.3 MB 00:00 (83/146): libsepol-2.8-3.fc30.i686.rpm 22 MB/s | 307 kB 00:00 (84/146): glibc-common-2.28.9000-19.fc30.i686.r 36 MB/s | 801 kB 00:00 (85/146): pcre2-10.32-4.fc30.i686.rpm 20 MB/s | 237 kB 00:00 (86/146): ncurses-base-6.1-8.20180923.fc30.noar 6.7 MB/s | 58 kB 00:00 (87/146): cracklib-2.9.6-17.fc30.i686.rpm 18 MB/s | 77 kB 00:00 (88/146): libnsl2-1.2.0-3.20180605git4a062cf.fc 15 MB/s | 57 kB 00:00 (89/146): libpwquality-1.4.0-11.fc30.i686.rpm 19 MB/s | 97 kB 00:00 (90/146): libtirpc-1.1.4-2.rc2.fc30.i686.rpm 20 MB/s | 105 kB 00:00 (91/146): libdb-5.3.28-34.fc30.i686.rpm 52 MB/s | 807 kB 00:00 (92/146): libgcc-8.2.1-5.fc30.i686.rpm 12 MB/s | 102 kB 00:00 (93/146): lz4-libs-1.8.2-2.fc29.i686.rpm 19 MB/s | 63 kB 00:00 (94/146): gc-7.6.4-4.fc29.i686.rpm 28 MB/s | 105 kB 00:00 (95/146): libffi-3.1-18.fc29.i686.rpm 12 MB/s | 31 kB 00:00 (96/146): libgcrypt-1.8.4-1.fc30.i686.rpm 30 MB/s | 417 kB 00:00 (97/146): libtool-ltdl-2.4.6-27.fc30.i686.rpm 8.0 MB/s | 36 kB 00:00 (98/146): libunistring-0.9.10-4.fc29.i686.rpm 44 MB/s | 423 kB 00:00 (99/146): file-libs-5.34-6.fc30.i686.rpm 45 MB/s | 532 kB 00:00 (100/146): libdb-utils-5.3.28-34.fc30.i686.rpm 21 MB/s | 133 kB 00:00 (101/146): fedora-repos-30-0.2.noarch.rpm 3.5 MB/s | 8.9 kB 00:00 (102/146): libarchive-3.3.3-1.fc30.i686.rpm 23 MB/s | 382 kB 00:00 (103/146): chkconfig-1.11-2.fc30.i686.rpm 31 MB/s | 170 kB 00:00 (104/146): elfutils-default-yama-scope-0.175-1. 4.1 MB/s | 16 kB 00:00 (105/146): libstdc++-8.2.1-5.fc30.i686.rpm 51 MB/s | 492 kB 00:00 (106/146): expat-2.2.6-1.fc30.i686.rpm 16 MB/s | 99 kB 00:00 (107/146): libipt-2.0-1.fc30.i686.rpm 25 MB/s | 60 kB 00:00 (108/146): libbabeltrace-1.5.6-1.fc29.i686.rpm 28 MB/s | 219 kB 00:00 (109/146): pkgconf-1.5.3-2.fc29.i686.rpm 10 MB/s | 39 kB 00:00 (110/146): pkgconf-m4-1.5.3-2.fc29.noarch.rpm 4.0 MB/s | 17 kB 00:00 (111/146): libzstd-1.3.6-1.fc30.i686.rpm 37 MB/s | 243 kB 00:00 (112/146): lua-libs-5.3.5-2.fc29.i686.rpm 18 MB/s | 127 kB 00:00 (113/146): crypto-policies-20181122-1.git70769d 7.5 MB/s | 46 kB 00:00 (114/146): ca-certificates-2018.2.26-2.fc30.noa 32 MB/s | 385 kB 00:00 (115/146): tzdata-2018g-1.fc30.noarch.rpm 38 MB/s | 425 kB 00:00 (116/146): libcom_err-1.44.4-1.fc30.i686.rpm 4.1 MB/s | 27 kB 00:00 (117/146): krb5-libs-1.17-1.beta1.1.fc30.i686.r 36 MB/s | 767 kB 00:00 (118/146): libgpg-error-1.31-2.fc29.i686.rpm 26 MB/s | 241 kB 00:00 (119/146): libatomic_ops-7.6.6-1.fc29.i686.rpm 7.0 MB/s | 34 kB 00:00 (120/146): fedora-gpg-keys-30-0.2.noarch.rpm 14 MB/s | 99 kB 00:00 (121/146): fedora-repos-rawhide-30-0.2.noarch.r 1.3 MB/s | 8.1 kB 00:00 (122/146): libxml2-2.9.8-4.fc29.i686.rpm 35 MB/s | 692 kB 00:00 (123/146): gdbm-libs-1.18-1.fc30.i686.rpm 7.4 MB/s | 53 kB 00:00 (124/146): python-pip-wheel-18.1-1.fc30.noarch. 30 MB/s | 1.2 MB 00:00 (125/146): glib2-2.58.1-2.fc30.i686.rpm 36 MB/s | 2.6 MB 00:00 (126/146): python-setuptools-wheel-40.4.3-1.fc3 14 MB/s | 274 kB 00:00 (127/146): libpkgconf-1.5.3-2.fc29.i686.rpm 6.7 MB/s | 37 kB 00:00 (128/146): sqlite-libs-3.25.2-1.fc30.i686.rpm 43 MB/s | 577 kB 00:00 (129/146): p11-kit-0.23.14-1.fc30.i686.rpm 30 MB/s | 236 kB 00:00 (130/146): p11-kit-trust-0.23.14-1.fc30.i686.rp 23 MB/s | 127 kB 00:00 (131/146): keyutils-libs-1.6-1.fc30.i686.rpm 6.6 MB/s | 30 kB 00:00 (132/146): libverto-0.3.0-6.fc29.i686.rpm 7.6 MB/s | 22 kB 00:00 (133/146): python3-libs-3.7.1-2.fc30.i686.rpm 42 MB/s | 7.9 MB 00:00 (134/146): libtasn1-4.13-6.fc30.i686.rpm 2.3 MB/s | 70 kB 00:00 (135/146): curl-7.62.0-1.fc30.i686.rpm 9.3 MB/s | 315 kB 00:00 (136/146): libmetalink-0.1.3-7.fc29.i686.rpm 5.0 MB/s | 31 kB 00:00 (137/146): libcurl-7.62.0-1.fc30.i686.rpm 36 MB/s | 280 kB 00:00 (138/146): brotli-1.0.5-1.fc29.i686.rpm 28 MB/s | 321 kB 00:00 (139/146): libidn2-2.0.5-2.fc29.i686.rpm 14 MB/s | 88 kB 00:00 (140/146): libnghttp2-1.35.0-1.fc30.i686.rpm 23 MB/s | 75 kB 00:00 (141/146): libpsl-0.20.2-5.fc29.i686.rpm 15 MB/s | 59 kB 00:00 (142/146): libssh-0.8.5-1.fc30.i686.rpm 37 MB/s | 229 kB 00:00 (143/146): openldap-2.4.46-10.fc30.i686.rpm 29 MB/s | 299 kB 00:00 (144/146): publicsuffix-list-dafsa-20180723-1.f 7.4 MB/s | 54 kB 00:00 (145/146): cyrus-sasl-lib-2.1.27-0.4rc7.fc30.i6 17 MB/s | 97 kB 00:00 (146/146): glibc-all-langpacks-2.28.9000-19.fc3 72 MB/s | 25 MB 00:00 -------------------------------------------------------------------------------- Total 62 MB/s | 88 MB 00:01 warning: /var/lib/mock/829451-fedora-rawhide-i386-1543191756.544420/root/var/cache/dnf/fedora-6cb74b5c20b9e175/packages/gawk-4.2.1-3.fc29.i686.rpm: Header V3 RSA/SHA256 Signature, key ID cfc659b9: NOKEY Importing GPG key 0xCFC659B9: Userid : "Fedora (30) " Fingerprint: F1D8 EC98 F241 AAF2 0DF6 9420 EF3C 111F CFC6 59B9 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-30-primary Key imported successfully Importing GPG key 0x429476B4: Userid : "Fedora 29 (29) " Fingerprint: 5A03 B4DD 8254 ECA0 2FDA 1637 A20A A56B 4294 76B4 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-29-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.9-2.fc29.i686 1/1 Preparing : 1/1 Installing : publicsuffix-list-dafsa-20180723-1.fc29.noarch 1/146 Installing : python-setuptools-wheel-40.4.3-1.fc30.noarch 2/146 Installing : python-pip-wheel-18.1-1.fc30.noarch 3/146 Installing : fedora-gpg-keys-30-0.2.noarch 4/146 Installing : fedora-release-common-30-0.14.noarch 5/146 Installing : fedora-release-30-0.14.noarch 6/146 Installing : fedora-repos-rawhide-30-0.2.noarch 7/146 Installing : fedora-repos-30-0.2.noarch 8/146 Installing : setup-2.12.3-1.fc30.noarch 9/146 Running scriptlet: setup-2.12.3-1.fc30.noarch 9/146 warning: /etc/hosts created as /etc/hosts.rpmnew Installing : filesystem-3.9-2.fc29.i686 10/146 Installing : basesystem-11-6.fc29.noarch 11/146 Installing : tzdata-2018g-1.fc30.noarch 12/146 Installing : pkgconf-m4-1.5.3-2.fc29.noarch 13/146 Installing : ncurses-base-6.1-8.20180923.fc30.noarch 14/146 Installing : coreutils-common-8.30-8.fc30.i686 15/146 Installing : 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62/146 Installing : unzip-6.0-42.fc30.i686 63/146 Installing : file-libs-5.34-6.fc30.i686 64/146 Installing : file-5.34-6.fc30.i686 65/146 Installing : libcap-ng-0.7.9-5.fc30.i686 66/146 Installing : audit-libs-3.0-0.4.20180831git0047a6c.fc30.i686 67/146 Running scriptlet: audit-libs-3.0-0.4.20180831git0047a6c.fc30.i686 67/146 Installing : pcre-8.42-5.fc30.i686 68/146 Installing : grep-3.1-8.fc29.i686 69/146 Installing : lz4-libs-1.8.2-2.fc29.i686 70/146 Installing : libzstd-1.3.6-1.fc30.i686 71/146 Installing : lua-libs-5.3.5-2.fc29.i686 72/146 Installing : xz-5.2.4-4.fc30.i686 73/146 Installing : libsemanage-2.8-6.fc30.i686 74/146 Installing : zip-3.0-23.fc29.i686 75/146 Installing : libpsl-0.20.2-5.fc29.i686 76/146 Installing : elfutils-0.175-1.fc30.i686 77/146 Installing : libmetalink-0.1.3-7.fc29.i686 78/146 Installing : tar-2:1.30-6.fc29.i686 79/146 Installing : patch-2.7.6-7.fc30.i686 80/146 Installing : libdb-utils-5.3.28-34.fc30.i686 81/146 Installing : zstd-1.3.6-1.fc30.i686 82/146 Installing : dwz-0.12-9.fc29.i686 83/146 Installing : libxml2-2.9.8-4.fc29.i686 84/146 Installing : bzip2-1.0.6-28.fc29.i686 85/146 Installing : sqlite-libs-3.25.2-1.fc30.i686 86/146 Installing : diffutils-3.6-5.fc29.i686 87/146 Installing : cpio-2.12-9.fc29.i686 88/146 Installing : libsigsegv-2.11-6.fc29.i686 89/146 Installing : gawk-4.2.1-3.fc29.i686 90/146 Installing : libsmartcols-2.33-0.1.fc30.i686 91/146 Installing : ncurses-6.1-8.20180923.fc30.i686 92/146 Installing : libtool-ltdl-2.4.6-27.fc30.i686 93/146 Installing : libipt-2.0-1.fc30.i686 94/146 Installing : libgpg-error-1.31-2.fc29.i686 95/146 Installing : libgcrypt-1.8.4-1.fc30.i686 96/146 Running scriptlet: libgcrypt-1.8.4-1.fc30.i686 96/146 Installing : libatomic_ops-7.6.6-1.fc29.i686 97/146 Installing : gc-7.6.4-4.fc29.i686 98/146 Installing : gdbm-libs-1:1.18-1.fc30.i686 99/146 Installing : libpkgconf-1.5.3-2.fc29.i686 100/146 Installing : pkgconf-1.5.3-2.fc29.i686 101/146 Installing : pkgconf-pkg-config-1.5.3-2.fc29.i686 102/146 Installing : keyutils-libs-1.6-1.fc30.i686 103/146 Installing : libverto-0.3.0-6.fc29.i686 104/146 Installing : libtasn1-4.13-6.fc30.i686 105/146 Installing : p11-kit-trust-0.23.14-1.fc30.i686 106/146 Running scriptlet: p11-kit-trust-0.23.14-1.fc30.i686 106/146 Installing : openssl-libs-1:1.1.1-7.fc30.i686 107/146 Running scriptlet: openssl-libs-1:1.1.1-7.fc30.i686 107/146 Installing : coreutils-8.30-8.fc30.i686 108/146 Installing : crypto-policies-20181122-1.git70769d9.fc30.noarc 109/146 Running scriptlet: crypto-policies-20181122-1.git70769d9.fc30.noarc 109/146 Running scriptlet: ca-certificates-2018.2.26-2.fc30.noarch 110/146 Installing : ca-certificates-2018.2.26-2.fc30.noarch 110/146 Running scriptlet: ca-certificates-2018.2.26-2.fc30.noarch 110/146 Installing : krb5-libs-1.17-1.beta1.1.fc30.i686 111/146 Installing : libtirpc-1.1.4-2.rc2.fc30.i686 112/146 Installing : libblkid-2.33-0.1.fc30.i686 113/146 Running scriptlet: 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Installing : shadow-utils-2:4.6-5.fc30.i686 129/146 Running scriptlet: libutempter-1.1.6-15.fc29.i686 130/146 Installing : libutempter-1.1.6-15.fc29.i686 130/146 Installing : binutils-2.31.1-16.fc30.i686 131/146 Running scriptlet: binutils-2.31.1-16.fc30.i686 131/146 Installing : libarchive-3.3.3-1.fc30.i686 132/146 Installing : brotli-1.0.5-1.fc29.i686 133/146 Installing : libnghttp2-1.35.0-1.fc30.i686 134/146 Installing : libcurl-7.62.0-1.fc30.i686 135/146 Installing : curl-7.62.0-1.fc30.i686 136/146 Installing : rpm-libs-4.14.2.1-3.fc30.i686 137/146 Installing : rpm-4.14.2.1-3.fc30.i686 138/146 Installing : efi-srpm-macros-4-1.fc30.noarch 139/146 Installing : redhat-rpm-config-125-1.fc30.noarch 140/146 Installing : gdb-headless-8.2.50.20181114-9.fc30.i686 141/146 Installing : rpm-build-libs-4.14.2.1-3.fc30.i686 142/146 Installing : rpm-build-4.14.2.1-3.fc30.i686 143/146 Installing : util-linux-2.33-0.1.fc30.i686 144/146 Running scriptlet: util-linux-2.33-0.1.fc30.i686 144/146 Installing : make-1:4.2.1-10.fc29.i686 145/146 Running scriptlet: make-1:4.2.1-10.fc29.i686 145/146 Installing : which-2.21-11.fc29.i686 146/146 Running scriptlet: filesystem-3.9-2.fc29.i686 146/146 Running scriptlet: glibc-all-langpacks-2.28.9000-19.fc30.i686 146/146 Running scriptlet: glibc-common-2.28.9000-19.fc30.i686 146/146 Running scriptlet: info-6.5-11.fc30.i686 146/146 Running scriptlet: glib2-2.58.1-2.fc30.i686 146/146 Verifying : gawk-4.2.1-3.fc29.i686 1/146 Verifying : shadow-utils-2:4.6-5.fc30.i686 2/146 Verifying : diffutils-3.6-5.fc29.i686 3/146 Verifying : gzip-1.9-7.fc29.i686 4/146 Verifying : util-linux-2.33-0.1.fc30.i686 5/146 Verifying : make-1:4.2.1-10.fc29.i686 6/146 Verifying : bash-4.4.23-5.fc30.i686 7/146 Verifying : redhat-rpm-config-125-1.fc30.noarch 8/146 Verifying : findutils-1:4.6.0-21.fc30.i686 9/146 Verifying : fedora-release-30-0.14.noarch 10/146 Verifying : sed-4.5-2.fc29.i686 11/146 Verifying : rpm-build-4.14.2.1-3.fc30.i686 12/146 Verifying : grep-3.1-8.fc29.i686 13/146 Verifying : which-2.21-11.fc29.i686 14/146 Verifying : patch-2.7.6-7.fc30.i686 15/146 Verifying : tar-2:1.30-6.fc29.i686 16/146 Verifying : info-6.5-11.fc30.i686 17/146 Verifying : unzip-6.0-42.fc30.i686 18/146 Verifying : cpio-2.12-9.fc29.i686 19/146 Verifying : coreutils-8.30-8.fc30.i686 20/146 Verifying : xz-5.2.4-4.fc30.i686 21/146 Verifying : bzip2-1.0.6-28.fc29.i686 22/146 Verifying : filesystem-3.9-2.fc29.i686 23/146 Verifying : glibc-2.28.9000-19.fc30.i686 24/146 Verifying : gmp-1:6.1.2-8.fc29.i686 25/146 Verifying : libsigsegv-2.11-6.fc29.i686 26/146 Verifying : mpfr-3.1.6-3.fc30.i686 27/146 Verifying : readline-7.0-12.fc29.i686 28/146 Verifying : audit-libs-3.0-0.4.20180831git0047a6c.fc30.i686 29/146 Verifying : libacl-2.2.53-2.fc29.i686 30/146 Verifying : libattr-2.4.48-4.fc30.i686 31/146 Verifying : libselinux-2.8-5.fc30.i686 32/146 Verifying : libsemanage-2.8-6.fc30.i686 33/146 Verifying : libxcrypt-4.4.0-1.fc30.i686 34/146 Verifying : setup-2.12.3-1.fc30.noarch 35/146 Verifying : libblkid-2.33-0.1.fc30.i686 36/146 Verifying : libcap-ng-0.7.9-5.fc30.i686 37/146 Verifying : libfdisk-2.33-0.1.fc30.i686 38/146 Verifying : libmount-2.33-0.1.fc30.i686 39/146 Verifying : libsmartcols-2.33-0.1.fc30.i686 40/146 Verifying : libutempter-1.1.6-15.fc29.i686 41/146 Verifying : libuuid-2.33-0.1.fc30.i686 42/146 Verifying : ncurses-libs-6.1-8.20180923.fc30.i686 43/146 Verifying : pam-1.3.1-9.fc30.i686 44/146 Verifying : systemd-libs-239-9.git9f3aed1.fc30.i686 45/146 Verifying : zlib-1.2.11-14.fc30.i686 46/146 Verifying : guile-5:2.0.14-12.fc29.i686 47/146 Verifying : dwz-0.12-9.fc29.i686 48/146 Verifying : efi-srpm-macros-4-1.fc30.noarch 49/146 Verifying : file-5.34-6.fc30.i686 50/146 Verifying : fpc-srpm-macros-1.1-5.fc29.noarch 51/146 Verifying : ghc-srpm-macros-1.4.2-8.fc29.noarch 52/146 Verifying : gnat-srpm-macros-4-4.fc30.noarch 53/146 Verifying : go-srpm-macros-2-18.fc29.noarch 54/146 Verifying : nim-srpm-macros-1-3.fc29.noarch 55/146 Verifying : ocaml-srpm-macros-5-4.fc29.noarch 56/146 Verifying : openblas-srpm-macros-2-4.fc29.noarch 57/146 Verifying : perl-srpm-macros-1-28.fc29.noarch 58/146 Verifying : python-srpm-macros-3-39.fc30.noarch 59/146 Verifying : qt5-srpm-macros-5.11.2-1.fc30.noarch 60/146 Verifying : rpm-4.14.2.1-3.fc30.i686 61/146 Verifying : rust-srpm-macros-6-1.fc30.noarch 62/146 Verifying : zip-3.0-23.fc29.i686 63/146 Verifying : fedora-release-common-30-0.14.noarch 64/146 Verifying : binutils-2.31.1-16.fc30.i686 65/146 Verifying : elfutils-0.175-1.fc30.i686 66/146 Verifying : elfutils-libelf-0.175-1.fc30.i686 67/146 Verifying : elfutils-libs-0.175-1.fc30.i686 68/146 Verifying : gdb-headless-8.2.50.20181114-9.fc30.i686 69/146 Verifying : pkgconf-pkg-config-1.5.3-2.fc29.i686 70/146 Verifying : popt-1.16-16.fc30.i686 71/146 Verifying : rpm-build-libs-4.14.2.1-3.fc30.i686 72/146 Verifying : rpm-libs-4.14.2.1-3.fc30.i686 73/146 Verifying : zstd-1.3.6-1.fc30.i686 74/146 Verifying : pcre-8.42-5.fc30.i686 75/146 Verifying : bzip2-libs-1.0.6-28.fc29.i686 76/146 Verifying : coreutils-common-8.30-8.fc30.i686 77/146 Verifying : libcap-2.25-12.fc29.i686 78/146 Verifying : ncurses-6.1-8.20180923.fc30.i686 79/146 Verifying : openssl-libs-1:1.1.1-7.fc30.i686 80/146 Verifying : xz-libs-5.2.4-4.fc30.i686 81/146 Verifying : basesystem-11-6.fc29.noarch 82/146 Verifying : glibc-common-2.28.9000-19.fc30.i686 83/146 Verifying : libsepol-2.8-3.fc30.i686 84/146 Verifying : pcre2-10.32-4.fc30.i686 85/146 Verifying : ncurses-base-6.1-8.20180923.fc30.noarch 86/146 Verifying : cracklib-2.9.6-17.fc30.i686 87/146 Verifying : libdb-5.3.28-34.fc30.i686 88/146 Verifying : libnsl2-1.2.0-3.20180605git4a062cf.fc30.i686 89/146 Verifying : libpwquality-1.4.0-11.fc30.i686 90/146 Verifying : libtirpc-1.1.4-2.rc2.fc30.i686 91/146 Verifying : libgcc-8.2.1-5.fc30.i686 92/146 Verifying : libgcrypt-1.8.4-1.fc30.i686 93/146 Verifying : lz4-libs-1.8.2-2.fc29.i686 94/146 Verifying : gc-7.6.4-4.fc29.i686 95/146 Verifying : libffi-3.1-18.fc29.i686 96/146 Verifying : libtool-ltdl-2.4.6-27.fc30.i686 97/146 Verifying : libunistring-0.9.10-4.fc29.i686 98/146 Verifying : file-libs-5.34-6.fc30.i686 99/146 Verifying : libarchive-3.3.3-1.fc30.i686 100/146 Verifying : libdb-utils-5.3.28-34.fc30.i686 101/146 Verifying : fedora-repos-30-0.2.noarch 102/146 Verifying : chkconfig-1.11-2.fc30.i686 103/146 Verifying : libstdc++-8.2.1-5.fc30.i686 104/146 Verifying : elfutils-default-yama-scope-0.175-1.fc30.noarch 105/146 Verifying : expat-2.2.6-1.fc30.i686 106/146 Verifying : libbabeltrace-1.5.6-1.fc29.i686 107/146 Verifying : libipt-2.0-1.fc30.i686 108/146 Verifying : python3-libs-3.7.1-2.fc30.i686 109/146 Verifying : pkgconf-1.5.3-2.fc29.i686 110/146 Verifying : pkgconf-m4-1.5.3-2.fc29.noarch 111/146 Verifying : libzstd-1.3.6-1.fc30.i686 112/146 Verifying : lua-libs-5.3.5-2.fc29.i686 113/146 Verifying : ca-certificates-2018.2.26-2.fc30.noarch 114/146 Verifying : crypto-policies-20181122-1.git70769d9.fc30.noarc 115/146 Verifying : tzdata-2018g-1.fc30.noarch 116/146 Verifying : krb5-libs-1.17-1.beta1.1.fc30.i686 117/146 Verifying : libcom_err-1.44.4-1.fc30.i686 118/146 Verifying : libgpg-error-1.31-2.fc29.i686 119/146 Verifying : libatomic_ops-7.6.6-1.fc29.i686 120/146 Verifying : libxml2-2.9.8-4.fc29.i686 121/146 Verifying : fedora-gpg-keys-30-0.2.noarch 122/146 Verifying : fedora-repos-rawhide-30-0.2.noarch 123/146 Verifying : glib2-2.58.1-2.fc30.i686 124/146 Verifying : gdbm-libs-1:1.18-1.fc30.i686 125/146 Verifying : python-pip-wheel-18.1-1.fc30.noarch 126/146 Verifying : python-setuptools-wheel-40.4.3-1.fc30.noarch 127/146 Verifying : sqlite-libs-3.25.2-1.fc30.i686 128/146 Verifying : libpkgconf-1.5.3-2.fc29.i686 129/146 Verifying : p11-kit-0.23.14-1.fc30.i686 130/146 Verifying : p11-kit-trust-0.23.14-1.fc30.i686 131/146 Verifying : keyutils-libs-1.6-1.fc30.i686 132/146 Verifying : libverto-0.3.0-6.fc29.i686 133/146 Verifying : libtasn1-4.13-6.fc30.i686 134/146 Verifying : curl-7.62.0-1.fc30.i686 135/146 Verifying : libmetalink-0.1.3-7.fc29.i686 136/146 Verifying : glibc-all-langpacks-2.28.9000-19.fc30.i686 137/146 Verifying : libcurl-7.62.0-1.fc30.i686 138/146 Verifying : brotli-1.0.5-1.fc29.i686 139/146 Verifying : libidn2-2.0.5-2.fc29.i686 140/146 Verifying : libnghttp2-1.35.0-1.fc30.i686 141/146 Verifying : libpsl-0.20.2-5.fc29.i686 142/146 Verifying : libssh-0.8.5-1.fc30.i686 143/146 Verifying : openldap-2.4.46-10.fc30.i686 144/146 Verifying : publicsuffix-list-dafsa-20180723-1.fc29.noarch 145/146 Verifying : cyrus-sasl-lib-2.1.27-0.4rc7.fc30.i686 146/146 Installed: bash.i686 4.4.23-5.fc30 bzip2.i686 1.0.6-28.fc29 coreutils.i686 8.30-8.fc30 cpio.i686 2.12-9.fc29 diffutils.i686 3.6-5.fc29 fedora-release.noarch 30-0.14 findutils.i686 1:4.6.0-21.fc30 gawk.i686 4.2.1-3.fc29 grep.i686 3.1-8.fc29 gzip.i686 1.9-7.fc29 info.i686 6.5-11.fc30 make.i686 1:4.2.1-10.fc29 patch.i686 2.7.6-7.fc30 redhat-rpm-config.noarch 125-1.fc30 rpm-build.i686 4.14.2.1-3.fc30 sed.i686 4.5-2.fc29 shadow-utils.i686 2:4.6-5.fc30 tar.i686 2:1.30-6.fc29 unzip.i686 6.0-42.fc30 util-linux.i686 2.33-0.1.fc30 which.i686 2.21-11.fc29 xz.i686 5.2.4-4.fc30 audit-libs.i686 3.0-0.4.20180831git0047a6c.fc30 basesystem.noarch 11-6.fc29 binutils.i686 2.31.1-16.fc30 brotli.i686 1.0.5-1.fc29 bzip2-libs.i686 1.0.6-28.fc29 ca-certificates.noarch 2018.2.26-2.fc30 chkconfig.i686 1.11-2.fc30 coreutils-common.i686 8.30-8.fc30 cracklib.i686 2.9.6-17.fc30 crypto-policies.noarch 20181122-1.git70769d9.fc30 curl.i686 7.62.0-1.fc30 cyrus-sasl-lib.i686 2.1.27-0.4rc7.fc30 dwz.i686 0.12-9.fc29 efi-srpm-macros.noarch 4-1.fc30 elfutils.i686 0.175-1.fc30 elfutils-default-yama-scope.noarch 0.175-1.fc30 elfutils-libelf.i686 0.175-1.fc30 elfutils-libs.i686 0.175-1.fc30 expat.i686 2.2.6-1.fc30 fedora-gpg-keys.noarch 30-0.2 fedora-release-common.noarch 30-0.14 fedora-repos.noarch 30-0.2 fedora-repos-rawhide.noarch 30-0.2 file.i686 5.34-6.fc30 file-libs.i686 5.34-6.fc30 filesystem.i686 3.9-2.fc29 fpc-srpm-macros.noarch 1.1-5.fc29 gc.i686 7.6.4-4.fc29 gdb-headless.i686 8.2.50.20181114-9.fc30 gdbm-libs.i686 1:1.18-1.fc30 ghc-srpm-macros.noarch 1.4.2-8.fc29 glib2.i686 2.58.1-2.fc30 glibc.i686 2.28.9000-19.fc30 glibc-all-langpacks.i686 2.28.9000-19.fc30 glibc-common.i686 2.28.9000-19.fc30 gmp.i686 1:6.1.2-8.fc29 gnat-srpm-macros.noarch 4-4.fc30 go-srpm-macros.noarch 2-18.fc29 guile.i686 5:2.0.14-12.fc29 keyutils-libs.i686 1.6-1.fc30 krb5-libs.i686 1.17-1.beta1.1.fc30 libacl.i686 2.2.53-2.fc29 libarchive.i686 3.3.3-1.fc30 libatomic_ops.i686 7.6.6-1.fc29 libattr.i686 2.4.48-4.fc30 libbabeltrace.i686 1.5.6-1.fc29 libblkid.i686 2.33-0.1.fc30 libcap.i686 2.25-12.fc29 libcap-ng.i686 0.7.9-5.fc30 libcom_err.i686 1.44.4-1.fc30 libcurl.i686 7.62.0-1.fc30 libdb.i686 5.3.28-34.fc30 libdb-utils.i686 5.3.28-34.fc30 libfdisk.i686 2.33-0.1.fc30 libffi.i686 3.1-18.fc29 libgcc.i686 8.2.1-5.fc30 libgcrypt.i686 1.8.4-1.fc30 libgpg-error.i686 1.31-2.fc29 libidn2.i686 2.0.5-2.fc29 libipt.i686 2.0-1.fc30 libmetalink.i686 0.1.3-7.fc29 libmount.i686 2.33-0.1.fc30 libnghttp2.i686 1.35.0-1.fc30 libnsl2.i686 1.2.0-3.20180605git4a062cf.fc30 libpkgconf.i686 1.5.3-2.fc29 libpsl.i686 0.20.2-5.fc29 libpwquality.i686 1.4.0-11.fc30 libselinux.i686 2.8-5.fc30 libsemanage.i686 2.8-6.fc30 libsepol.i686 2.8-3.fc30 libsigsegv.i686 2.11-6.fc29 libsmartcols.i686 2.33-0.1.fc30 libssh.i686 0.8.5-1.fc30 libstdc++.i686 8.2.1-5.fc30 libtasn1.i686 4.13-6.fc30 libtirpc.i686 1.1.4-2.rc2.fc30 libtool-ltdl.i686 2.4.6-27.fc30 libunistring.i686 0.9.10-4.fc29 libutempter.i686 1.1.6-15.fc29 libuuid.i686 2.33-0.1.fc30 libverto.i686 0.3.0-6.fc29 libxcrypt.i686 4.4.0-1.fc30 libxml2.i686 2.9.8-4.fc29 libzstd.i686 1.3.6-1.fc30 lua-libs.i686 5.3.5-2.fc29 lz4-libs.i686 1.8.2-2.fc29 mpfr.i686 3.1.6-3.fc30 ncurses.i686 6.1-8.20180923.fc30 ncurses-base.noarch 6.1-8.20180923.fc30 ncurses-libs.i686 6.1-8.20180923.fc30 nim-srpm-macros.noarch 1-3.fc29 ocaml-srpm-macros.noarch 5-4.fc29 openblas-srpm-macros.noarch 2-4.fc29 openldap.i686 2.4.46-10.fc30 openssl-libs.i686 1:1.1.1-7.fc30 p11-kit.i686 0.23.14-1.fc30 p11-kit-trust.i686 0.23.14-1.fc30 pam.i686 1.3.1-9.fc30 pcre.i686 8.42-5.fc30 pcre2.i686 10.32-4.fc30 perl-srpm-macros.noarch 1-28.fc29 pkgconf.i686 1.5.3-2.fc29 pkgconf-m4.noarch 1.5.3-2.fc29 pkgconf-pkg-config.i686 1.5.3-2.fc29 popt.i686 1.16-16.fc30 publicsuffix-list-dafsa.noarch 20180723-1.fc29 python-pip-wheel.noarch 18.1-1.fc30 python-setuptools-wheel.noarch 40.4.3-1.fc30 python-srpm-macros.noarch 3-39.fc30 python3-libs.i686 3.7.1-2.fc30 qt5-srpm-macros.noarch 5.11.2-1.fc30 readline.i686 7.0-12.fc29 rpm.i686 4.14.2.1-3.fc30 rpm-build-libs.i686 4.14.2.1-3.fc30 rpm-libs.i686 4.14.2.1-3.fc30 rust-srpm-macros.noarch 6-1.fc30 setup.noarch 2.12.3-1.fc30 sqlite-libs.i686 3.25.2-1.fc30 systemd-libs.i686 239-9.git9f3aed1.fc30 tzdata.noarch 2018g-1.fc30 xz-libs.i686 5.2.4-4.fc30 zip.i686 3.0-23.fc29 zlib.i686 1.2.11-14.fc30 zstd.i686 1.3.6-1.fc30 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: Start: buildsrpm Start: rpmbuild -bs sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory Building target platforms: i686 Building for target i686 Wrote: /builddir/build/SRPMS/bionetgen-2.4.0-3.fc30.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/829451-fedora-rawhide-i386-1543191756.544420/root/var/log/dnf.rpm.log /var/lib/mock/829451-fedora-rawhide-i386-1543191756.544420/root/var/log/dnf.librepo.log /var/lib/mock/829451-fedora-rawhide-i386-1543191756.544420/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/tmp/tmpck9hps8h/bionetgen.spec) Config(child) 1 minutes 9 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running: unbuffer /usr/bin/mock --rebuild /var/lib/copr-rpmbuild/results/bionetgen-2.4.0-3.fc30.src.rpm --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1543191826.840001 -r child WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.13 starting (python version = 3.6.5)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(/var/lib/copr-rpmbuild/results/bionetgen-2.4.0-3.fc30.src.rpm) Config(829451-fedora-rawhide-i386) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/829451-fedora-rawhide-i386-1543191826.840001/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled HW Info plugin Mock Version: 1.4.13 INFO: Mock Version: 1.4.13 Start: dnf update 'Copr repository' 755 kB/s | 51 kB 00:00 fedora 71 MB/s | 57 MB 00:00 Last metadata expiration check: 0:00:00 ago on Mon 26 Nov 2018 12:23:51 AM UTC. Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for bionetgen-2.4.0-3.fc30.src.rpm Start: build setup for bionetgen-2.4.0-3.fc30.src.rpm sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory sh: /usr/bin/perl: No such file or directory Building target platforms: i686 Building for target i686 Wrote: /builddir/build/SRPMS/bionetgen-2.4.0-3.fc30.src.rpm Last metadata expiration check: 0:00:00 ago on Mon 26 Nov 2018 12:24:19 AM UTC. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: autoconf noarch 2.69-28.fc29 fedora 698 k automake noarch 1.16.1-7.fc30 fedora 695 k gcc i686 8.2.1-5.fc30 fedora 22 M gcc-c++ i686 8.2.1-5.fc30 fedora 12 M libtool i686 2.4.6-27.fc30 fedora 687 k muParser-devel i686 2.2.6-1.fc30 fedora 28 k openmpi-devel i686 4.0.0-1.fc30 copr_base 1.0 M perl-generators noarch 1.10-10.fc29 fedora 15 k sundials-devel i686 3.2.1-1.fc30 fedora 157 k Installing dependencies: Lmod i686 7.8.9-1.fc30 fedora 218 k SuperLUMT-common noarch 3.1.0-18.fc30 fedora 648 k SuperLUMT-double i686 3.1.0-18.fc30 fedora 82 k acl i686 2.2.53-2.fc29 fedora 72 k annobin i686 8.61-1.fc30 fedora 183 k cpp i686 8.2.1-5.fc30 fedora 10 M cryptsetup-libs i686 2.0.5-1.fc30 fedora 318 k dbus i686 1:1.12.10-9.fc30 fedora 11 k dbus-broker i686 16-4.fc30 fedora 152 k dbus-common noarch 1:1.12.10-9.fc30 fedora 17 k device-mapper i686 1.02.152-1.fc30 fedora 153 k device-mapper-libs i686 1.02.152-1.fc30 fedora 194 k dracut i686 049-11.git20181024.fc30 fedora 319 k emacs-filesystem noarch 1:26.1-7.fc30 fedora 10 k fipscheck i686 1.5.0-5.fc29 fedora 26 k fipscheck-lib i686 1.5.0-5.fc29 fedora 14 k gcc-gfortran i686 8.2.1-5.fc30 fedora 11 M glibc-devel i686 2.28.9000-19.fc30 fedora 1.0 M glibc-headers i686 2.28.9000-19.fc30 fedora 466 k gnutls i686 3.6.4-5.fc30 fedora 871 k groff-base i686 1.22.3-17.fc29 fedora 1.0 M hwloc-libs i686 1.11.9-2.fc29 fedora 1.6 M iptables-libs i686 1.8.0-3.fc29 fedora 57 k isl i686 0.16.1-7.fc29 fedora 964 k json-c i686 0.13.1-3.fc29 fedora 39 k kernel-headers i686 4.20.0-0.rc3.git1.1.fc30 fedora 1.2 M kmod i686 25-4.fc30 fedora 119 k kmod-libs i686 25-4.fc30 fedora 65 k libargon2 i686 20161029-6.fc29 fedora 32 k libasan i686 8.2.1-5.fc30 fedora 418 k libatomic i686 8.2.1-5.fc30 fedora 40 k libedit i686 3.1-24.20170329cvs.fc29 fedora 101 k libevent i686 2.1.8-4.fc30 fedora 249 k libfabric i686 1.6.2-1.fc30 fedora 440 k libgfortran i686 8.2.1-5.fc30 fedora 602 k libgomp i686 8.2.1-5.fc30 fedora 211 k libibumad i686 20.1-1.fc30 fedora 24 k libibverbs i686 20.1-1.fc30 fedora 249 k libkcapi i686 1.1.3-1.fc30 fedora 44 k libkcapi-hmaccalc i686 1.1.3-1.fc30 fedora 27 k libmpc i686 1.1.0-2.fc29 fedora 63 k libmpx i686 8.2.1-5.fc30 fedora 45 k libnl3 i686 3.4.0-6.fc29 fedora 323 k libpcap i686 14:1.9.0-2.fc29 fedora 156 k libquadmath i686 8.2.1-5.fc30 fedora 230 k libquadmath-devel i686 8.2.1-5.fc30 fedora 42 k librdmacm i686 20.1-1.fc30 fedora 66 k libseccomp i686 2.3.3-4.fc30 fedora 56 k libstdc++-devel i686 8.2.1-5.fc30 fedora 2.1 M libubsan i686 8.2.1-5.fc30 fedora 174 k libxcrypt-devel i686 4.4.0-1.fc30 fedora 31 k lua i686 5.3.5-2.fc29 fedora 195 k lua-filesystem i686 1.6.3-9.fc29 fedora 33 k lua-json noarch 1.3.2-10.fc29 fedora 26 k lua-lpeg i686 1.0.1-6.fc29 fedora 66 k lua-posix i686 33.3.1-11.fc29 fedora 177 k lua-term i686 0.07-7.fc29 fedora 15 k m4 i686 1.4.18-9.fc29 fedora 218 k muParser i686 2.2.6-1.fc30 fedora 133 k munge i686 0.5.13-2.fc29 fedora 110 k munge-libs i686 0.5.13-2.fc29 fedora 39 k nettle i686 3.4-7.fc30 fedora 309 k numactl-libs i686 2.0.12-1.fc29 fedora 29 k openblas i686 0.3.3-2.fc30 fedora 27 k openblas-serial i686 0.3.3-2.fc30 fedora 3.7 M openmpi i686 4.0.0-1.fc30 copr_base 2.4 M opensm-libs i686 3.3.21-1.fc30 fedora 71 k openssh i686 7.9p1-2.fc30 fedora 446 k openssh-clients i686 7.9p1-2.fc30 fedora 614 k perl-Carp noarch 1.50-417.fc29 fedora 29 k perl-Data-Dumper i686 2.173-1.fc30 fedora 55 k perl-Encode i686 4:2.98-6.fc29 fedora 1.1 M perl-Errno i686 1.29-425.fc30 fedora 25 k perl-Exporter noarch 5.73-418.fc29 fedora 31 k perl-Fedora-VSP noarch 0.001-12.fc29 fedora 23 k perl-File-Path noarch 2.16-1.fc30 fedora 36 k perl-File-Temp noarch 1:0.230.800-2.fc29 fedora 60 k perl-Getopt-Long noarch 1:2.50-417.fc29 fedora 61 k perl-HTTP-Tiny noarch 0.076-1.fc29 fedora 55 k perl-IO i686 1.39-425.fc30 fedora 90 k perl-MIME-Base64 i686 3.15-417.fc29 fedora 30 k perl-PathTools i686 3.75-1.fc30 fedora 86 k perl-Pod-Escapes noarch 1:1.07-417.fc29 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-418.fc29 fedora 83 k perl-Pod-Simple noarch 1:3.35-417.fc29 fedora 211 k perl-Pod-Usage noarch 4:1.69-417.fc29 fedora 32 k perl-Scalar-List-Utils i686 3:1.50-417.fc29 fedora 66 k perl-Socket i686 4:2.027-417.fc29 fedora 55 k perl-Storable i686 1:3.11-5.fc30 fedora 96 k perl-Term-ANSIColor noarch 4.06-418.fc29 fedora 44 k perl-Term-Cap noarch 1.17-417.fc29 fedora 22 k perl-Text-ParseWords noarch 3.30-417.fc29 fedora 16 k perl-Text-Tabs+Wrap noarch 2013.0523-417.fc29 fedora 23 k perl-Thread-Queue noarch 3.13-1.fc29 fedora 21 k perl-Time-Local noarch 2:1.280-3.fc29 fedora 31 k perl-Unicode-Normalize i686 1.26-417.fc29 fedora 74 k perl-constant noarch 1.33-418.fc29 fedora 23 k perl-interpreter i686 4:5.28.0-425.fc30 fedora 6.4 M perl-libs i686 4:5.28.0-425.fc30 fedora 1.7 M perl-macros i686 4:5.28.0-425.fc30 fedora 20 k perl-parent noarch 1:0.237-2.fc29 fedora 14 k perl-podlators noarch 1:4.11-3.fc29 fedora 115 k perl-threads i686 1:2.22-417.fc29 fedora 59 k perl-threads-shared i686 1.58-417.fc29 fedora 44 k pmix i686 3.0.2-1.fc30 copr_base 614 k procps-ng i686 3.3.15-4.fc29 fedora 324 k qrencode-libs i686 3.4.4-6.fc29 fedora 57 k rdma-core i686 20.1-1.fc30 fedora 56 k rpm-mpi-hooks noarch 5-4.fc30 copr_base 11 k suitesparse i686 4.4.6-17.fc30 fedora 646 k sundials i686 3.2.1-1.fc30 fedora 407 k systemd i686 239-9.git9f3aed1.fc30 fedora 3.6 M systemd-pam i686 239-9.git9f3aed1.fc30 fedora 173 k systemd-rpm-macros noarch 239-9.git9f3aed1.fc30 fedora 20 k systemd-udev i686 239-9.git9f3aed1.fc30 fedora 1.2 M tbb i686 2019.2-1.fc30 fedora 158 k tcl i686 1:8.6.8-2.fc29 fedora 1.2 M torque-libs i686 4.2.10-19.fc30 fedora 134 k Transaction Summary ================================================================================ Install 127 Packages Total download size: 101 M Installed size: 309 M Downloading Packages: (1/127): automake-1.16.1-7.fc30.noarch.rpm 13 MB/s | 695 kB 00:00 (2/127): autoconf-2.69-28.fc29.noarch.rpm 9.2 MB/s | 698 kB 00:00 (3/127): libtool-2.4.6-27.fc30.i686.rpm 9.0 MB/s | 687 kB 00:00 (4/127): muParser-devel-2.2.6-1.fc30.i686.rpm 447 kB/s | 28 kB 00:00 (5/127): perl-generators-1.10-10.fc29.noarch.rp 1.9 MB/s | 15 kB 00:00 (6/127): sundials-devel-3.2.1-1.fc30.i686.rpm 1.8 MB/s | 157 kB 00:00 (7/127): gcc-c++-8.2.1-5.fc30.i686.rpm 40 MB/s | 12 MB 00:00 (8/127): emacs-filesystem-26.1-7.fc30.noarch.rp 3.3 MB/s | 10 kB 00:00 (9/127): m4-1.4.18-9.fc29.i686.rpm 15 MB/s | 218 kB 00:00 (10/127): perl-Carp-1.50-417.fc29.noarch.rpm 5.6 MB/s | 29 kB 00:00 (11/127): perl-Data-Dumper-2.173-1.fc30.i686.rp 7.1 MB/s | 55 kB 00:00 (12/127): perl-Errno-1.29-425.fc30.i686.rpm 3.0 MB/s | 25 kB 00:00 (13/127): perl-Exporter-5.73-418.fc29.noarch.rp 3.5 MB/s | 31 kB 00:00 (14/127): perl-File-Path-2.16-1.fc30.noarch.rpm 5.2 MB/s | 36 kB 00:00 (15/127): perl-Getopt-Long-2.50-417.fc29.noarch 7.3 MB/s | 61 kB 00:00 (16/127): perl-IO-1.39-425.fc30.i686.rpm 11 MB/s | 90 kB 00:00 (17/127): perl-PathTools-3.75-1.fc30.i686.rpm 8.4 MB/s | 86 kB 00:00 (18/127): perl-Text-ParseWords-3.30-417.fc29.no 1.9 MB/s | 16 kB 00:00 (19/127): perl-constant-1.33-418.fc29.noarch.rp 3.1 MB/s | 23 kB 00:00 (20/127): gcc-8.2.1-5.fc30.i686.rpm 40 MB/s | 22 MB 00:00 (21/127): openmpi-devel-4.0.0-1.fc30.i686.rpm 4.1 MB/s | 1.0 MB 00:00 (22/127): perl-Thread-Queue-3.13-1.fc29.noarch. 3.1 MB/s | 21 kB 00:00 (23/127): perl-threads-2.22-417.fc29.i686.rpm 9.4 MB/s | 59 kB 00:00 (24/127): perl-libs-5.28.0-425.fc30.i686.rpm 33 MB/s | 1.7 MB 00:00 (25/127): glibc-devel-2.28.9000-19.fc30.i686.rp 25 MB/s | 1.0 MB 00:00 (26/127): isl-0.16.1-7.fc29.i686.rpm 25 MB/s | 964 kB 00:00 (27/127): libasan-8.2.1-5.fc30.i686.rpm 21 MB/s | 418 kB 00:00 (28/127): libatomic-8.2.1-5.fc30.i686.rpm 4.1 MB/s | 40 kB 00:00 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perl-Pod-Usage-1.69-417.fc29.noarch.r 3.0 MB/s | 32 kB 00:00 (45/127): perl-Text-Tabs+Wrap-2013.0523-417.fc2 5.7 MB/s | 23 kB 00:00 (46/127): perl-Socket-2.027-417.fc29.i686.rpm 8.8 MB/s | 55 kB 00:00 (47/127): perl-parent-0.237-2.fc29.noarch.rpm 4.7 MB/s | 14 kB 00:00 (48/127): perl-Unicode-Normalize-1.26-417.fc29. 13 MB/s | 74 kB 00:00 (49/127): perl-threads-shared-1.58-417.fc29.i68 12 MB/s | 44 kB 00:00 (50/127): libxcrypt-devel-4.4.0-1.fc30.i686.rpm 6.1 MB/s | 31 kB 00:00 (51/127): glibc-headers-2.28.9000-19.fc30.i686. 29 MB/s | 466 kB 00:00 (52/127): SuperLUMT-double-3.1.0-18.fc30.i686.r 2.0 MB/s | 82 kB 00:00 (53/127): suitesparse-4.4.6-17.fc30.i686.rpm 7.8 MB/s | 646 kB 00:00 (54/127): libfabric-1.6.2-1.fc30.i686.rpm 22 MB/s | 440 kB 00:00 (55/127): libgfortran-8.2.1-5.fc30.i686.rpm 36 MB/s | 602 kB 00:00 (56/127): openblas-serial-0.3.3-2.fc30.i686.rpm 21 MB/s | 3.7 MB 00:00 (57/127): libibverbs-20.1-1.fc30.i686.rpm 12 MB/s | 249 kB 00:00 (58/127): librdmacm-20.1-1.fc30.i686.rpm 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Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : perl-Exporter-5.73-418.fc29.noarch 1/127 Installing : perl-libs-4:5.28.0-425.fc30.i686 2/127 Installing : perl-Carp-1.50-417.fc29.noarch 3/127 Installing : perl-parent-1:0.237-2.fc29.noarch 4/127 Installing : perl-Text-ParseWords-3.30-417.fc29.noarch 5/127 Installing : perl-macros-4:5.28.0-425.fc30.i686 6/127 Installing : perl-Fedora-VSP-0.001-12.fc29.noarch 7/127 Installing : perl-Term-ANSIColor-4.06-418.fc29.noarch 8/127 Installing : systemd-rpm-macros-239-9.git9f3aed1.fc30.noarch 9/127 Installing : openblas-0.3.3-2.fc30.i686 10/127 Running scriptlet: openblas-0.3.3-2.fc30.i686 10/127 Installing : SuperLUMT-common-3.1.0-18.fc30.noarch 11/127 Installing : kernel-headers-4.20.0-0.rc3.git1.1.fc30.i686 12/127 Running scriptlet: glibc-headers-2.28.9000-19.fc30.i686 13/127 Installing : glibc-headers-2.28.9000-19.fc30.i686 13/127 Installing : libxcrypt-devel-4.4.0-1.fc30.i686 14/127 Installing : glibc-devel-2.28.9000-19.fc30.i686 15/127 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101/127 Installing : tbb-2019.2-1.fc30.i686 102/127 Installing : suitesparse-4.4.6-17.fc30.i686 103/127 Installing : numactl-libs-2.0.12-1.fc29.i686 104/127 Running scriptlet: numactl-libs-2.0.12-1.fc29.i686 104/127 Installing : hwloc-libs-1.11.9-2.fc29.i686 105/127 Installing : pmix-3.0.2-1.fc30.i686 106/127 Installing : openmpi-4.0.0-1.fc30.i686 107/127 Installing : muParser-2.2.6-1.fc30.i686 108/127 Running scriptlet: muParser-2.2.6-1.fc30.i686 108/127 Installing : libubsan-8.2.1-5.fc30.i686 109/127 Running scriptlet: libubsan-8.2.1-5.fc30.i686 109/127 Installing : libmpx-8.2.1-5.fc30.i686 110/127 Running scriptlet: libmpx-8.2.1-5.fc30.i686 110/127 Installing : libatomic-8.2.1-5.fc30.i686 111/127 Running scriptlet: libatomic-8.2.1-5.fc30.i686 111/127 Installing : libasan-8.2.1-5.fc30.i686 112/127 Running scriptlet: libasan-8.2.1-5.fc30.i686 112/127 Installing : isl-0.16.1-7.fc29.i686 113/127 Running scriptlet: isl-0.16.1-7.fc29.i686 113/127 Installing : gcc-8.2.1-5.fc30.i686 114/127 Running scriptlet: gcc-8.2.1-5.fc30.i686 114/127 Installing : libquadmath-devel-8.2.1-5.fc30.i686 115/127 Installing : gcc-gfortran-8.2.1-5.fc30.i686 116/127 Running scriptlet: gcc-gfortran-8.2.1-5.fc30.i686 116/127 Installing : sundials-3.2.1-1.fc30.i686 117/127 Installing : m4-1.4.18-9.fc29.i686 118/127 Installing : autoconf-2.69-28.fc29.noarch 119/127 Running scriptlet: autoconf-2.69-28.fc29.noarch 119/127 Installing : automake-1.16.1-7.fc30.noarch 120/127 Installing : libtool-2.4.6-27.fc30.i686 121/127 Installing : sundials-devel-3.2.1-1.fc30.i686 122/127 Installing : muParser-devel-2.2.6-1.fc30.i686 123/127 Installing : perl-generators-1.10-10.fc29.noarch 124/127 Installing : openmpi-devel-4.0.0-1.fc30.i686 125/127 Installing : gcc-c++-8.2.1-5.fc30.i686 126/127 Installing : annobin-8.61-1.fc30.i686 127/127 Running scriptlet: annobin-8.61-1.fc30.i686 127/127 Running scriptlet: systemd-239-9.git9f3aed1.fc30.i686 127/127 Running scriptlet: systemd-udev-239-9.git9f3aed1.fc30.i686 127/127 Verifying : autoconf-2.69-28.fc29.noarch 1/127 Verifying : automake-1.16.1-7.fc30.noarch 2/127 Verifying : gcc-8.2.1-5.fc30.i686 3/127 Verifying : gcc-c++-8.2.1-5.fc30.i686 4/127 Verifying : libtool-2.4.6-27.fc30.i686 5/127 Verifying : muParser-devel-2.2.6-1.fc30.i686 6/127 Verifying : perl-generators-1.10-10.fc29.noarch 7/127 Verifying : sundials-devel-3.2.1-1.fc30.i686 8/127 Verifying : openmpi-devel-4.0.0-1.fc30.i686 9/127 Verifying : emacs-filesystem-1:26.1-7.fc30.noarch 10/127 Verifying : m4-1.4.18-9.fc29.i686 11/127 Verifying : perl-Carp-1.50-417.fc29.noarch 12/127 Verifying : perl-Data-Dumper-2.173-1.fc30.i686 13/127 Verifying : perl-Errno-1.29-425.fc30.i686 14/127 Verifying : perl-Exporter-5.73-418.fc29.noarch 15/127 Verifying : perl-File-Path-2.16-1.fc30.noarch 16/127 Verifying : perl-Getopt-Long-1:2.50-417.fc29.noarch 17/127 Verifying : perl-IO-1.39-425.fc30.i686 18/127 Verifying : perl-PathTools-3.75-1.fc30.i686 19/127 Verifying : perl-Text-ParseWords-3.30-417.fc29.noarch 20/127 Verifying : perl-constant-1.33-418.fc29.noarch 21/127 Verifying : perl-interpreter-4:5.28.0-425.fc30.i686 22/127 Verifying : perl-libs-4:5.28.0-425.fc30.i686 23/127 Verifying : perl-Thread-Queue-3.13-1.fc29.noarch 24/127 Verifying : perl-threads-1:2.22-417.fc29.i686 25/127 Verifying : cpp-8.2.1-5.fc30.i686 26/127 Verifying : glibc-devel-2.28.9000-19.fc30.i686 27/127 Verifying : isl-0.16.1-7.fc29.i686 28/127 Verifying : libasan-8.2.1-5.fc30.i686 29/127 Verifying : libatomic-8.2.1-5.fc30.i686 30/127 Verifying : libgomp-8.2.1-5.fc30.i686 31/127 Verifying : libmpc-1.1.0-2.fc29.i686 32/127 Verifying : libmpx-8.2.1-5.fc30.i686 33/127 Verifying : libubsan-8.2.1-5.fc30.i686 34/127 Verifying : libstdc++-devel-8.2.1-5.fc30.i686 35/127 Verifying : muParser-2.2.6-1.fc30.i686 36/127 Verifying : perl-Fedora-VSP-0.001-12.fc29.noarch 37/127 Verifying : perl-macros-4:5.28.0-425.fc30.i686 38/127 Verifying : sundials-3.2.1-1.fc30.i686 39/127 Verifying : openmpi-4.0.0-1.fc30.i686 40/127 Verifying : gcc-gfortran-8.2.1-5.fc30.i686 41/127 Verifying : hwloc-libs-1.11.9-2.fc29.i686 42/127 Verifying : libevent-2.1.8-4.fc30.i686 43/127 Verifying : perl-Scalar-List-Utils-3:1.50-417.fc29.i686 44/127 Verifying : perl-Pod-Usage-4:1.69-417.fc29.noarch 45/127 Verifying : perl-Socket-4:2.027-417.fc29.i686 46/127 Verifying : perl-Text-Tabs+Wrap-2013.0523-417.fc29.noarch 47/127 Verifying : perl-Unicode-Normalize-1.26-417.fc29.i686 48/127 Verifying : perl-parent-1:0.237-2.fc29.noarch 49/127 Verifying : perl-threads-shared-1.58-417.fc29.i686 50/127 Verifying : glibc-headers-2.28.9000-19.fc30.i686 51/127 Verifying : libxcrypt-devel-4.4.0-1.fc30.i686 52/127 Verifying : SuperLUMT-double-3.1.0-18.fc30.i686 53/127 Verifying : openblas-serial-0.3.3-2.fc30.i686 54/127 Verifying : suitesparse-4.4.6-17.fc30.i686 55/127 Verifying : libfabric-1.6.2-1.fc30.i686 56/127 Verifying : libgfortran-8.2.1-5.fc30.i686 57/127 Verifying : libibverbs-20.1-1.fc30.i686 58/127 Verifying : libquadmath-8.2.1-5.fc30.i686 59/127 Verifying : librdmacm-20.1-1.fc30.i686 60/127 Verifying : opensm-libs-3.3.21-1.fc30.i686 61/127 Verifying : openssh-clients-7.9p1-2.fc30.i686 62/127 Verifying : torque-libs-4.2.10-19.fc30.i686 63/127 Verifying : libquadmath-devel-8.2.1-5.fc30.i686 64/127 Verifying : numactl-libs-2.0.12-1.fc29.i686 65/127 Verifying : perl-Pod-Perldoc-3.28.01-418.fc29.noarch 66/127 Verifying : perl-podlators-1:4.11-3.fc29.noarch 67/127 Verifying : kernel-headers-4.20.0-0.rc3.git1.1.fc30.i686 68/127 Verifying : SuperLUMT-common-3.1.0-18.fc30.noarch 69/127 Verifying : openblas-0.3.3-2.fc30.i686 70/127 Verifying : tbb-2019.2-1.fc30.i686 71/127 Verifying : libnl3-3.4.0-6.fc29.i686 72/127 Verifying : rdma-core-20.1-1.fc30.i686 73/127 Verifying : libibumad-20.1-1.fc30.i686 74/127 Verifying : fipscheck-lib-1.5.0-5.fc29.i686 75/127 Verifying : libedit-3.1-24.20170329cvs.fc29.i686 76/127 Verifying : openssh-7.9p1-2.fc30.i686 77/127 Verifying : munge-0.5.13-2.fc29.i686 78/127 Verifying : munge-libs-0.5.13-2.fc29.i686 79/127 Verifying : groff-base-1.22.3-17.fc29.i686 80/127 Verifying : perl-Encode-4:2.98-6.fc29.i686 81/127 Verifying : perl-File-Temp-1:0.230.800-2.fc29.noarch 82/127 Verifying : perl-HTTP-Tiny-0.076-1.fc29.noarch 83/127 Verifying : perl-Pod-Simple-1:3.35-417.fc29.noarch 84/127 Verifying : perl-Term-ANSIColor-4.06-418.fc29.noarch 85/127 Verifying : perl-Term-Cap-1.17-417.fc29.noarch 86/127 Verifying : dracut-049-11.git20181024.fc30.i686 87/127 Verifying : kmod-25-4.fc30.i686 88/127 Verifying : systemd-239-9.git9f3aed1.fc30.i686 89/127 Verifying : fipscheck-1.5.0-5.fc29.i686 90/127 Verifying : perl-MIME-Base64-3.15-417.fc29.i686 91/127 Verifying : perl-Storable-1:3.11-5.fc30.i686 92/127 Verifying : perl-Time-Local-2:1.280-3.fc29.noarch 93/127 Verifying : perl-Pod-Escapes-1:1.07-417.fc29.noarch 94/127 Verifying : kmod-libs-25-4.fc30.i686 95/127 Verifying : libkcapi-hmaccalc-1.1.3-1.fc30.i686 96/127 Verifying : procps-ng-3.3.15-4.fc29.i686 97/127 Verifying : systemd-udev-239-9.git9f3aed1.fc30.i686 98/127 Verifying : acl-2.2.53-2.fc29.i686 99/127 Verifying : cryptsetup-libs-2.0.5-1.fc30.i686 100/127 Verifying : dbus-1:1.12.10-9.fc30.i686 101/127 Verifying : gnutls-3.6.4-5.fc30.i686 102/127 Verifying : iptables-libs-1.8.0-3.fc29.i686 103/127 Verifying : libseccomp-2.3.3-4.fc30.i686 104/127 Verifying : qrencode-libs-3.4.4-6.fc29.i686 105/127 Verifying : systemd-pam-239-9.git9f3aed1.fc30.i686 106/127 Verifying : systemd-rpm-macros-239-9.git9f3aed1.fc30.noarch 107/127 Verifying : libkcapi-1.1.3-1.fc30.i686 108/127 Verifying : device-mapper-libs-1.02.152-1.fc30.i686 109/127 Verifying : json-c-0.13.1-3.fc29.i686 110/127 Verifying : libargon2-20161029-6.fc29.i686 111/127 Verifying : dbus-broker-16-4.fc30.i686 112/127 Verifying : nettle-3.4-7.fc30.i686 113/127 Verifying : libpcap-14:1.9.0-2.fc29.i686 114/127 Verifying : device-mapper-1.02.152-1.fc30.i686 115/127 Verifying : dbus-common-1:1.12.10-9.fc30.noarch 116/127 Verifying : annobin-8.61-1.fc30.i686 117/127 Verifying : rpm-mpi-hooks-5-4.fc30.noarch 118/127 Verifying : pmix-3.0.2-1.fc30.i686 119/127 Verifying : Lmod-7.8.9-1.fc30.i686 120/127 Verifying : lua-5.3.5-2.fc29.i686 121/127 Verifying : lua-filesystem-1.6.3-9.fc29.i686 122/127 Verifying : lua-json-1.3.2-10.fc29.noarch 123/127 Verifying : lua-posix-33.3.1-11.fc29.i686 124/127 Verifying : lua-term-0.07-7.fc29.i686 125/127 Verifying : tcl-1:8.6.8-2.fc29.i686 126/127 Verifying : lua-lpeg-1.0.1-6.fc29.i686 127/127 Installed: autoconf.noarch 2.69-28.fc29 automake.noarch 1.16.1-7.fc30 gcc.i686 8.2.1-5.fc30 gcc-c++.i686 8.2.1-5.fc30 libtool.i686 2.4.6-27.fc30 muParser-devel.i686 2.2.6-1.fc30 openmpi-devel.i686 4.0.0-1.fc30 perl-generators.noarch 1.10-10.fc29 sundials-devel.i686 3.2.1-1.fc30 Lmod.i686 7.8.9-1.fc30 SuperLUMT-common.noarch 3.1.0-18.fc30 SuperLUMT-double.i686 3.1.0-18.fc30 acl.i686 2.2.53-2.fc29 annobin.i686 8.61-1.fc30 cpp.i686 8.2.1-5.fc30 cryptsetup-libs.i686 2.0.5-1.fc30 dbus.i686 1:1.12.10-9.fc30 dbus-broker.i686 16-4.fc30 dbus-common.noarch 1:1.12.10-9.fc30 device-mapper.i686 1.02.152-1.fc30 device-mapper-libs.i686 1.02.152-1.fc30 dracut.i686 049-11.git20181024.fc30 emacs-filesystem.noarch 1:26.1-7.fc30 fipscheck.i686 1.5.0-5.fc29 fipscheck-lib.i686 1.5.0-5.fc29 gcc-gfortran.i686 8.2.1-5.fc30 glibc-devel.i686 2.28.9000-19.fc30 glibc-headers.i686 2.28.9000-19.fc30 gnutls.i686 3.6.4-5.fc30 groff-base.i686 1.22.3-17.fc29 hwloc-libs.i686 1.11.9-2.fc29 iptables-libs.i686 1.8.0-3.fc29 isl.i686 0.16.1-7.fc29 json-c.i686 0.13.1-3.fc29 kernel-headers.i686 4.20.0-0.rc3.git1.1.fc30 kmod.i686 25-4.fc30 kmod-libs.i686 25-4.fc30 libargon2.i686 20161029-6.fc29 libasan.i686 8.2.1-5.fc30 libatomic.i686 8.2.1-5.fc30 libedit.i686 3.1-24.20170329cvs.fc29 libevent.i686 2.1.8-4.fc30 libfabric.i686 1.6.2-1.fc30 libgfortran.i686 8.2.1-5.fc30 libgomp.i686 8.2.1-5.fc30 libibumad.i686 20.1-1.fc30 libibverbs.i686 20.1-1.fc30 libkcapi.i686 1.1.3-1.fc30 libkcapi-hmaccalc.i686 1.1.3-1.fc30 libmpc.i686 1.1.0-2.fc29 libmpx.i686 8.2.1-5.fc30 libnl3.i686 3.4.0-6.fc29 libpcap.i686 14:1.9.0-2.fc29 libquadmath.i686 8.2.1-5.fc30 libquadmath-devel.i686 8.2.1-5.fc30 librdmacm.i686 20.1-1.fc30 libseccomp.i686 2.3.3-4.fc30 libstdc++-devel.i686 8.2.1-5.fc30 libubsan.i686 8.2.1-5.fc30 libxcrypt-devel.i686 4.4.0-1.fc30 lua.i686 5.3.5-2.fc29 lua-filesystem.i686 1.6.3-9.fc29 lua-json.noarch 1.3.2-10.fc29 lua-lpeg.i686 1.0.1-6.fc29 lua-posix.i686 33.3.1-11.fc29 lua-term.i686 0.07-7.fc29 m4.i686 1.4.18-9.fc29 muParser.i686 2.2.6-1.fc30 munge.i686 0.5.13-2.fc29 munge-libs.i686 0.5.13-2.fc29 nettle.i686 3.4-7.fc30 numactl-libs.i686 2.0.12-1.fc29 openblas.i686 0.3.3-2.fc30 openblas-serial.i686 0.3.3-2.fc30 openmpi.i686 4.0.0-1.fc30 opensm-libs.i686 3.3.21-1.fc30 openssh.i686 7.9p1-2.fc30 openssh-clients.i686 7.9p1-2.fc30 perl-Carp.noarch 1.50-417.fc29 perl-Data-Dumper.i686 2.173-1.fc30 perl-Encode.i686 4:2.98-6.fc29 perl-Errno.i686 1.29-425.fc30 perl-Exporter.noarch 5.73-418.fc29 perl-Fedora-VSP.noarch 0.001-12.fc29 perl-File-Path.noarch 2.16-1.fc30 perl-File-Temp.noarch 1:0.230.800-2.fc29 perl-Getopt-Long.noarch 1:2.50-417.fc29 perl-HTTP-Tiny.noarch 0.076-1.fc29 perl-IO.i686 1.39-425.fc30 perl-MIME-Base64.i686 3.15-417.fc29 perl-PathTools.i686 3.75-1.fc30 perl-Pod-Escapes.noarch 1:1.07-417.fc29 perl-Pod-Perldoc.noarch 3.28.01-418.fc29 perl-Pod-Simple.noarch 1:3.35-417.fc29 perl-Pod-Usage.noarch 4:1.69-417.fc29 perl-Scalar-List-Utils.i686 3:1.50-417.fc29 perl-Socket.i686 4:2.027-417.fc29 perl-Storable.i686 1:3.11-5.fc30 perl-Term-ANSIColor.noarch 4.06-418.fc29 perl-Term-Cap.noarch 1.17-417.fc29 perl-Text-ParseWords.noarch 3.30-417.fc29 perl-Text-Tabs+Wrap.noarch 2013.0523-417.fc29 perl-Thread-Queue.noarch 3.13-1.fc29 perl-Time-Local.noarch 2:1.280-3.fc29 perl-Unicode-Normalize.i686 1.26-417.fc29 perl-constant.noarch 1.33-418.fc29 perl-interpreter.i686 4:5.28.0-425.fc30 perl-libs.i686 4:5.28.0-425.fc30 perl-macros.i686 4:5.28.0-425.fc30 perl-parent.noarch 1:0.237-2.fc29 perl-podlators.noarch 1:4.11-3.fc29 perl-threads.i686 1:2.22-417.fc29 perl-threads-shared.i686 1.58-417.fc29 pmix.i686 3.0.2-1.fc30 procps-ng.i686 3.3.15-4.fc29 qrencode-libs.i686 3.4.4-6.fc29 rdma-core.i686 20.1-1.fc30 rpm-mpi-hooks.noarch 5-4.fc30 suitesparse.i686 4.4.6-17.fc30 sundials.i686 3.2.1-1.fc30 systemd.i686 239-9.git9f3aed1.fc30 systemd-pam.i686 239-9.git9f3aed1.fc30 systemd-rpm-macros.noarch 239-9.git9f3aed1.fc30 systemd-udev.i686 239-9.git9f3aed1.fc30 tbb.i686 2019.2-1.fc30 tcl.i686 1:8.6.8-2.fc29 torque-libs.i686 4.2.10-19.fc30 Complete! Finish: build setup for bionetgen-2.4.0-3.fc30.src.rpm Start: rpmbuild bionetgen-2.4.0-3.fc30.src.rpm Building target platforms: i686 Building for target i686 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Z8wNQ0 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bionetgen-BioNetGen-2.4.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/bionetgen-BioNetGen-2.4.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd bionetgen-BioNetGen-2.4.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/bionetgen-network-solver.patch + rm bng2/libsource/Mathutils.tar.gz bng2/libsource/cvode-2.6.0.tar.gz bng2/libsource/gsl-1.9.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz bng2/libsource/muparser_v2_2_4.zip + pushd bng2/Network3 ~/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3 ~/build/BUILD/bionetgen-BioNetGen-2.4.0 + sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' configure.ac + sed -i 's/cvode-.*//; s/muparser_.*//' configure.ac Makefile.am + sed -i -r 's/(run_network_LDADD =).*/\1 libmathutils.la -lmuparser -lsundials_nvecserial -lsundials_cvode/' src/Makefile.am + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.87vYtV + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 + pushd bng2/Network3 ~/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3 ~/build/BUILD/bionetgen-BioNetGen-2.4.0 + autoreconf -iv autoreconf: Entering directory `.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal -I m4 aclocal: warning: couldn't open directory 'm4': No such file or directory autoreconf: configure.ac: tracing autoreconf: running: libtoolize --copy libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf: running: /usr/bin/autoconf autoreconf: running: /usr/bin/autoheader autoreconf: running: automake --add-missing --copy --no-force configure.ac:12: installing './ar-lib' configure.ac:12: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' autoreconf: Leaving directory `.' + . /etc/profile.d/modules.sh ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 66 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man::;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man:: ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.7/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + warnings='-Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub '/usr/lib/rpm/redhat/config.sub' -> './config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess '/usr/lib/rpm/redhat/config.guess' -> './config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for i686-redhat-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for i686-redhat-linux-gnu-ar... no checking for i686-redhat-linux-gnu-lib... no checking for i686-redhat-linux-gnu-link... no checking for ar... ar checking the archiver (ar) interface... ar checking for i686-redhat-linux-gnu-ar... ar checking the archiver (ar) interface... (cached) ar checking build system type... i686-redhat-linux-gnu checking host system type... i686-redhat-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-redhat-linux-gnu file names to i686-redhat-linux-gnu format... func_convert_file_noop checking how to convert i686-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for i686-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for i686-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i686-redhat-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for i686-redhat-linux-gnu-strip... no checking for strip... strip checking for i686-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for i686-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for i686-redhat-linux-gnu-g++... no checking for i686-redhat-linux-gnu-c++... no checking for i686-redhat-linux-gnu-gpp... no checking for i686-redhat-linux-gnu-aCC... no checking for i686-redhat-linux-gnu-CC... no checking for i686-redhat-linux-gnu-cxx... no checking for i686-redhat-linux-gnu-cc++... no checking for i686-redhat-linux-gnu-cl.exe... no checking for i686-redhat-linux-gnu-FCC... no checking for i686-redhat-linux-gnu-KCC... no checking for i686-redhat-linux-gnu-RCC... no checking for i686-redhat-linux-gnu-xlC_r... no checking for i686-redhat-linux-gnu-xlC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gawk... (cached) gawk checking for i686-redhat-linux-gnu-gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for floor... no checking for pow... no checking for rint... no checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strpbrk... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands + /usr/bin/make -O -j2 -C src make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network3.o `test -f 'network3.cpp' || echo './'`network3.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network.o `test -f 'network.cpp' || echo './'`network.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-misc.o `test -f 'util/misc.cpp' || echo './'`util/misc.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-function.o `test -f 'model/function.cpp' || echo './'`model/function.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-observable.o `test -f 'model/observable.cpp' || echo './'`model/observable.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-rateExpression.o `test -f 'model/rateExpression.cpp' || echo './'`model/rateExpression.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-run_network.o `test -f 'run_network.cpp' || echo './'`run_network.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-simpleSpecies.o `test -f 'model/simpleSpecies.cpp' || echo './'`model/simpleSpecies.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-reaction.o `test -f 'model/reaction.cpp' || echo './'`model/reaction.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateElementary.o `test -f 'model/rateExpressions/rateElementary.cpp' || echo './'`model/rateExpressions/rateElementary.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateHill.o `test -f 'model/rateExpressions/rateHill.cpp' || echo './'`model/rateExpressions/rateHill.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMM.o `test -f 'model/rateExpressions/rateMM.cpp' || echo './'`model/rateExpressions/rateMM.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMuParser.o `test -f 'model/rateExpressions/rateMuParser.cpp' || echo './'`model/rateExpressions/rateMuParser.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateSaturation.o `test -f 'model/rateExpressions/rateSaturation.cpp' || echo './'`model/rateExpressions/rateSaturation.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-bioNetGenRxn.o `test -f 'model/reactions/bioNetGenRxn.cpp' || echo './'`model/reactions/bioNetGenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-elementaryRxn.o `test -f 'model/reactions/elementaryRxn.cpp' || echo './'`model/reactions/elementaryRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-functionalRxn.o `test -f 'model/reactions/functionalRxn.cpp' || echo './'`model/reactions/functionalRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-hillRxn.o `test -f 'model/reactions/hillRxn.cpp' || echo './'`model/reactions/hillRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-michaelisMentenRxn.o `test -f 'model/reactions/michaelisMentenRxn.cpp' || echo './'`model/reactions/michaelisMentenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-saturationRxn.o `test -f 'model/reactions/saturationRxn.cpp' || echo './'`model/reactions/saturationRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-firingGenerator.o `test -f 'pla/base/firingGenerator.cpp' || echo './'`pla/base/firingGenerator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/run_network-PLA.o `test -f 'pla/PLA.cpp' || echo './'`pla/PLA.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-postleapChecker.o `test -f 'pla/base/postleapChecker.cpp' || echo './'`pla/base/postleapChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-rxnClassifier.o `test -f 'pla/base/rxnClassifier.cpp' || echo './'`pla/base/rxnClassifier.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-tauCalculator.o `test -f 'pla/base/tauCalculator.cpp' || echo './'`pla/base/tauCalculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o `test -f 'pla/eRungeKutta/util/binomialCorrector_RK.cpp' || echo './'`pla/eRungeKutta/util/binomialCorrector_RK.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-aEff_Calculator.o `test -f 'pla/eRungeKutta/util/aEff_Calculator.cpp' || echo './'`pla/eRungeKutta/util/aEff_Calculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-butcherTableau.o `test -f 'pla/eRungeKutta/util/butcherTableau.cpp' || echo './'`pla/eRungeKutta/util/butcherTableau.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_FG.o `test -f 'pla/fEuler/fEuler_FG.cpp' || echo './'`pla/fEuler/fEuler_FG.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapRB_TC.o `test -f 'pla/fEuler/fEulerPreleapRB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapRB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapSB_TC.o `test -f 'pla/fEuler/fEulerPreleapSB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapSB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_TC_PL.o `test -f 'pla/fEuler/fEulerRB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerRB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_PL.o `test -f 'pla/fEuler/fEulerRB_PL.cpp' || echo './'`pla/fEuler/fEulerRB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_RC.o `test -f 'pla/fEuler/fEuler_RC.cpp' || echo './'`pla/fEuler/fEuler_RC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_PL.o `test -f 'pla/fEuler/fEulerSB_PL.cpp' || echo './'`pla/fEuler/fEulerSB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_TC_PL.o `test -f 'pla/fEuler/fEulerSB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerSB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-negPopChecker.o `test -f 'pla/util/negPopChecker.cpp' || echo './'`pla/util/negPopChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-g_Getter.o `test -f 'pla/util/g_Getter.cpp' || echo './'`pla/util/g_Getter.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-preleap_TC.o `test -f 'pla/util/preleap_TC.cpp' || echo './'`pla/util/preleap_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-rbChecker.o `test -f 'pla/util/rbChecker.cpp' || echo './'`pla/util/rbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-sbChecker.o `test -f 'pla/util/sbChecker.cpp' || echo './'`pla/util/sbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-fixed_TC.o `test -f 'pla/util/fixed_TC.cpp' || echo './'`pla/util/fixed_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-rand.o `test -f 'util/rand.cpp' || echo './'`util/rand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/MTrand/run_network-mtrand.o `test -f 'util/MTrand/mtrand.cpp' || echo './'`util/MTrand/mtrand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-conversion.o `test -f 'util/conversion.cpp' || echo './'`util/conversion.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/rand2/run_network-rand2.o `test -f 'util/rand2/rand2.cpp' || echo './'`util/rand2/rand2.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cabs.lo util/mathutils/cabs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c -fPIC -DPIC -o util/mathutils/.libs/cabs.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c -o util/mathutils/cabs.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/cabs.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cadd.lo util/mathutils/cadd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c -fPIC -DPIC -o util/mathutils/.libs/cadd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c -o util/mathutils/cadd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/cadd.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/allocate.lo util/mathutils/allocate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c -fPIC -DPIC -o util/mathutils/.libs/allocate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c -o util/mathutils/allocate.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/allocate.c: In function 'ALLOC_MATRIX': util/mathutils/allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable] register int i,j; ^ util/mathutils/allocate.c: In function 'IALLOC_MATRIX': util/mathutils/allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable] register int i,j; ^ util/mathutils/allocate.c: In function 'ZALLOC_MATRIX': util/mathutils/allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable] register int i,j; ^ In file included from util/mathutils/allocate.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cconj.lo util/mathutils/cconj.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c -fPIC -DPIC -o util/mathutils/.libs/cconj.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c -o util/mathutils/cconj.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/cconj.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cmult.lo util/mathutils/cmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c -fPIC -DPIC -o util/mathutils/.libs/cmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c -o util/mathutils/cmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/cmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/complex_zero.lo util/mathutils/complex_zero.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c -fPIC -DPIC -o util/mathutils/.libs/complex_zero.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c -o util/mathutils/complex_zero.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/complex_zero.c:2: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/copy_vector.lo util/mathutils/copy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c -fPIC -DPIC -o util/mathutils/.libs/copy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c -o util/mathutils/copy_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/copy_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cprob.lo util/mathutils/cprob.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c -fPIC -DPIC -o util/mathutils/.libs/cprob.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c -o util/mathutils/cprob.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/cprob.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/csub.lo util/mathutils/csub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c -fPIC -DPIC -o util/mathutils/.libs/csub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c -o util/mathutils/csub.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/csub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/dotp.lo util/mathutils/dotp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c -fPIC -DPIC -o util/mathutils/.libs/dotp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c -o util/mathutils/dotp.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/dotp.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/eigensystem.lo util/mathutils/eigensystem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c -fPIC -DPIC -o util/mathutils/.libs/eigensystem.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c -o util/mathutils/eigensystem.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/eigensystem.c:1: util/mathutils/eigensystem.c: In function 'SYM_EIGENSYSTEM': util/mathutils/eigensystem.c:27:11: warning: implicit declaration of function 'dsyev' [-Wimplicit-function-declaration] FNAME(dsyev)(&jobz, &uplo, &N, A[0], &N, evals, work, &lwork, &info); ^~~~~ util/mathutils/mathutils.h:18:20: note: in definition of macro 'FNAME' #define FNAME(fun) fun ^~~ util/mathutils/eigensystem.c: In function 'GEN_SYM_EIGENSYSTEM': util/mathutils/eigensystem.c:58:11: warning: implicit declaration of function 'dsygv' [-Wimplicit-function-declaration] FNAME(dsygv)(&itype, &jobz, &uplo, &N, A[0], &N, B[0], &N, evals, work, ^~~~~ util/mathutils/mathutils.h:18:20: note: in definition of macro 'FNAME' #define FNAME(fun) fun ^~~ At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/expi.lo util/mathutils/expi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c -fPIC -DPIC -o util/mathutils/.libs/expi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c -o util/mathutils/expi.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/expi.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/gram_schmidt.lo util/mathutils/gram_schmidt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c -fPIC -DPIC -o util/mathutils/.libs/gram_schmidt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c -o util/mathutils/gram_schmidt.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/gram_schmidt.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c -o util/mathutils/herm_matrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/herm_matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_vector_mult.lo util/mathutils/herm_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c -o util/mathutils/herm_matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/herm_matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/icmult.lo util/mathutils/icmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c -fPIC -DPIC -o util/mathutils/.libs/icmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c -o util/mathutils/icmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/icmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/init.lo util/mathutils/init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c -fPIC -DPIC -o util/mathutils/.libs/init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c -o util/mathutils/init.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/init.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/integration.lo util/mathutils/integration.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c -fPIC -DPIC -o util/mathutils/.libs/integration.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c -o util/mathutils/integration.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/integration.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/linsolve.lo util/mathutils/linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c -fPIC -DPIC -o util/mathutils/.libs/linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c -o util/mathutils/linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/linsolve.c: In function 'LINSOLVE': util/mathutils/linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable] register int i,j; ^ util/mathutils/linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable] register int i,j; ^ In file included from util/mathutils/linsolve.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matherr.lo util/mathutils/matherr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c -fPIC -DPIC -o util/mathutils/.libs/matherr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c -o util/mathutils/matherr.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matherr.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_add.lo util/mathutils/matrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c -fPIC -DPIC -o util/mathutils/.libs/matrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c -o util/mathutils/matrix_add.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrix_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_elt.lo util/mathutils/matrix_elt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c -fPIC -DPIC -o util/mathutils/.libs/matrix_elt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c -o util/mathutils/matrix_elt.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrix_elt.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_mult.lo util/mathutils/matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c -o util/mathutils/matrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_sub.lo util/mathutils/matrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/matrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c -o util/mathutils/matrix_sub.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrix_sub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_transpose.lo util/mathutils/matrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/matrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c -o util/mathutils/matrix_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrix_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_vector_mult.lo util/mathutils/matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c -o util/mathutils/matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrixexp.lo util/mathutils/matrixexp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c -fPIC -DPIC -o util/mathutils/.libs/matrixexp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c -o util/mathutils/matrixexp.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/matrixexp.c:5: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/norm.lo util/mathutils/norm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c -fPIC -DPIC -o util/mathutils/.libs/norm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c -o util/mathutils/norm.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/norm.c: In function 'NORM': util/mathutils/norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable] double norm; ^~~~ In file included from util/mathutils/norm.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/minimum.lo util/mathutils/minimum.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c -fPIC -DPIC -o util/mathutils/.libs/minimum.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c -o util/mathutils/minimum.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/minimum.c: In function 'MIN_BRACKET': util/mathutils/minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable] double ulim,u,r,q,fu,dum; ^~~ In file included from util/mathutils/minimum.c:3: At top level: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ util/mathutils/minimum.c: In function 'MIN_FIND': util/mathutils/minimum.c:117:31: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] if (fabs(p) >= fabs(0.5*q*etemp) || p <= q*(a-x) || p >= q*(b-x)) ~~~~~^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/normsq.lo util/mathutils/normsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c -fPIC -DPIC -o util/mathutils/.libs/normsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c -o util/mathutils/normsq.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/normsq.c: In function 'NORMSQ': util/mathutils/normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable] double norm; ^~~~ In file included from util/mathutils/normsq.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/project.lo util/mathutils/project.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c -fPIC -DPIC -o util/mathutils/.libs/project.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c -o util/mathutils/project.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/project.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/random.lo util/mathutils/random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c -fPIC -DPIC -o util/mathutils/.libs/random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c -o util/mathutils/random.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/random.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rcmult.lo util/mathutils/rcmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c -fPIC -DPIC -o util/mathutils/.libs/rcmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c -o util/mathutils/rcmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/rcmult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rect_transpose.lo util/mathutils/rect_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c -fPIC -DPIC -o util/mathutils/.libs/rect_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c -o util/mathutils/rect_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/rect_transpose.c: In function 'RECT_TRANSPOSE': util/mathutils/rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable] double **At, *Aptr, *Atptr; ^~~~~ util/mathutils/rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable] double **At, *Aptr, *Atptr; ^~~~ In file included from util/mathutils/rect_transpose.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/roots.lo util/mathutils/roots.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c -fPIC -DPIC -o util/mathutils/.libs/roots.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c -o util/mathutils/roots.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/roots.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ util/mathutils/roots.c: In function 'ROOT_FIND': util/mathutils/roots.c:69:17: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] min2=fabs(e*q); ~^~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/runge-kutta.lo util/mathutils/runge-kutta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c -fPIC -DPIC -o util/mathutils/.libs/runge-kutta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c -o util/mathutils/runge-kutta.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/runge-kutta.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/scale_vector.lo util/mathutils/scale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c -fPIC -DPIC -o util/mathutils/.libs/scale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c -o util/mathutils/scale_vector.o >/dev/null 2>&1 In file included from util/mathutils/scale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sum_vector.lo util/mathutils/sum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c -fPIC -DPIC -o util/mathutils/.libs/sum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c -o util/mathutils/sum_vector.o >/dev/null 2>&1 In file included from util/mathutils/sum_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/splines.lo util/mathutils/splines.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c -fPIC -DPIC -o util/mathutils/.libs/splines.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c -o util/mathutils/splines.o >/dev/null 2>&1 In file included from util/mathutils/splines.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_linsolve.lo util/mathutils/sym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c -o util/mathutils/sym_linsolve.o >/dev/null 2>&1 In file included from util/mathutils/sym_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c -o util/mathutils/sym_matrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/sym_matrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sym_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c -o util/mathutils/sym_matrix_vector_mult.o >/dev/null 2>&1 In file included from util/mathutils/sym_matrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/svd.lo util/mathutils/svd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c -fPIC -DPIC -o util/mathutils/.libs/svd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c -o util/mathutils/svd.o >/dev/null 2>&1 In file included from util/mathutils/svd.c:2: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sympos_linsolve.lo util/mathutils/sympos_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sympos_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c -o util/mathutils/sympos_linsolve.o >/dev/null 2>&1 In file included from util/mathutils/sympos_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/test_transpose.lo util/mathutils/test_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c -fPIC -DPIC -o util/mathutils/.libs/test_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c -o util/mathutils/test_transpose.o >/dev/null 2>&1 util/mathutils/test_transpose.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] main() ^~~~ In file included from util/mathutils/test_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testdummy.lo util/mathutils/testdummy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c -fPIC -DPIC -o util/mathutils/.libs/testdummy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c -o util/mathutils/testdummy.o >/dev/null 2>&1 util/mathutils/testdummy.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] main(){ ^~~~ util/mathutils/testdummy.c: In function 'main': util/mathutils/testdummy.c:5:9: warning: unused variable 'incx' [-Wunused-variable] int incx=1; ^~~~ util/mathutils/testdummy.c:9:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &n); ^~~~~~~~~~~~~~~ util/mathutils/testdummy.c:15:2: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", x+i); ^~~~~~~~~~~~~~~~~ In file included from util/mathutils/testdummy.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testgram.lo util/mathutils/testgram.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c -fPIC -DPIC -o util/mathutils/.libs/testgram.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c -o util/mathutils/testgram.o >/dev/null 2>&1 util/mathutils/testgram.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] main(int argc, char *argv[]){ ^~~~ util/mathutils/testgram.c: In function 'main': util/mathutils/testgram.c:7:63: warning: unused variable 'V' [-Wunused-variable] double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^ util/mathutils/testgram.c:7:58: warning: unused variable 'w' [-Wunused-variable] double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^ util/mathutils/testgram.c:7:52: warning: unused variable 'UtU' [-Wunused-variable] double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^~~ util/mathutils/testgram.c:7:46: warning: unused variable 'Ut' [-Wunused-variable] double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^~ util/mathutils/testgram.c:5:7: warning: unused variable 'nr' [-Wunused-variable] int nr, n_run; ^~ In file included from util/mathutils/testgram.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testspline.lo util/mathutils/testspline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c -fPIC -DPIC -o util/mathutils/.libs/testspline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c -o util/mathutils/testspline.o >/dev/null 2>&1 util/mathutils/testspline.c:7:1: warning: return type defaults to 'int' [-Wimplicit-int] main() ^~~~ In file included from util/mathutils/testspline.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testsvd.lo util/mathutils/testsvd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c -fPIC -DPIC -o util/mathutils/.libs/testsvd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c -o util/mathutils/testsvd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' util/mathutils/testsvd.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] main(int argc, char *argv[]){ ^~~~ util/mathutils/testsvd.c: In function 'main': util/mathutils/testsvd.c:7:28: warning: unused variable 'GtG' [-Wunused-variable] double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^~~ util/mathutils/testsvd.c:7:22: warning: unused variable 'Gt' [-Wunused-variable] double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^~ util/mathutils/testsvd.c:7:17: warning: unused variable 'G' [-Wunused-variable] double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; ^ In file included from util/mathutils/testsvd.c:1: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_add.lo util/mathutils/vector_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c -fPIC -DPIC -o util/mathutils/.libs/vector_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c -o util/mathutils/vector_add.o >/dev/null 2>&1 In file included from util/mathutils/vector_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_dist.lo util/mathutils/vector_dist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c -fPIC -DPIC -o util/mathutils/.libs/vector_dist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c -o util/mathutils/vector_dist.o >/dev/null 2>&1 In file included from util/mathutils/vector_dist.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zcopy_vector.lo util/mathutils/zcopy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c -fPIC -DPIC -o util/mathutils/.libs/zcopy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c -o util/mathutils/zcopy_vector.o >/dev/null 2>&1 In file included from util/mathutils/zcopy_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotc.lo util/mathutils/zdotc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c -fPIC -DPIC -o util/mathutils/.libs/zdotc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c -o util/mathutils/zdotc.o >/dev/null 2>&1 In file included from util/mathutils/zdotc.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotu.lo util/mathutils/zdotu.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c -fPIC -DPIC -o util/mathutils/.libs/zdotu.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c -o util/mathutils/zdotu.o >/dev/null 2>&1 In file included from util/mathutils/zdotu.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c -o util/mathutils/zmatrix_add.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_add.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testutils.lo util/mathutils/testutils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c -fPIC -DPIC -o util/mathutils/.libs/testutils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c -o util/mathutils/testutils.o >/dev/null 2>&1 util/mathutils/testutils.c:6:1: warning: return type defaults to 'int' [-Wimplicit-int] main (int argc, char *argv[]) ^~~~ util/mathutils/testutils.c: In function 'main': util/mathutils/testutils.c:15:12: warning: unused variable 'z1' [-Wunused-variable] dcomplex z1; ^~ util/mathutils/testutils.c:10:7: warning: unused variable 'seed' [-Wunused-variable] int seed; ^~~~ util/mathutils/testutils.c:8:11: warning: unused variable 'k' [-Wunused-variable] int i,j,k; ^ In file included from util/mathutils/testutils.c:2: At top level: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c -o util/mathutils/zmatrix_mult.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c -o util/mathutils/zmatrix_sub.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_sub.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c -o util/mathutils/zmatrix_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' In file included from util/mathutils/zmatrix_transpose.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_vector_mult.lo util/mathutils/zmatrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c -o util/mathutils/zmatrix_vector_mult.o >/dev/null 2>&1 In file included from util/mathutils/zmatrix_vector_mult.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znorm.lo util/mathutils/znorm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c -fPIC -DPIC -o util/mathutils/.libs/znorm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c -o util/mathutils/znorm.o >/dev/null 2>&1 In file included from util/mathutils/znorm.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znormsq.lo util/mathutils/znormsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c -fPIC -DPIC -o util/mathutils/.libs/znormsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c -o util/mathutils/znormsq.o >/dev/null 2>&1 In file included from util/mathutils/znormsq.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zrscale_vector.lo util/mathutils/zrscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zrscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c -o util/mathutils/zrscale_vector.o >/dev/null 2>&1 In file included from util/mathutils/zrscale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zscale_vector.lo util/mathutils/zscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c -o util/mathutils/zscale_vector.o >/dev/null 2>&1 In file included from util/mathutils/zscale_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsum_vector.lo util/mathutils/zsum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c -fPIC -DPIC -o util/mathutils/.libs/zsum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c -o util/mathutils/zsum_vector.o >/dev/null 2>&1 In file included from util/mathutils/zsum_vector.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsym_linsolve.lo util/mathutils/zsym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/zsym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c -o util/mathutils/zsym_linsolve.o >/dev/null 2>&1 In file included from util/mathutils/zsym_linsolve.c:1: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] static double dswap; ^~~~~ util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] static int imarg1, imarg2; ^~~~~~ util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] static double marg1, marg2; ^~~~~ util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] static int isqrarg; ^~~~~~~ util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] static double sqrarg; ^~~~~~ make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libmathutils.la util/mathutils/allocate.lo util/mathutils/cabs.lo util/mathutils/cadd.lo util/mathutils/cconj.lo util/mathutils/cmult.lo util/mathutils/complex_zero.lo util/mathutils/copy_vector.lo util/mathutils/cprob.lo util/mathutils/csub.lo util/mathutils/dotp.lo util/mathutils/eigensystem.lo util/mathutils/expi.lo util/mathutils/gram_schmidt.lo util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_vector_mult.lo util/mathutils/icmult.lo util/mathutils/init.lo util/mathutils/integration.lo util/mathutils/linsolve.lo util/mathutils/matherr.lo util/mathutils/matrix_add.lo util/mathutils/matrix_elt.lo util/mathutils/matrix_mult.lo util/mathutils/matrix_sub.lo util/mathutils/matrix_transpose.lo util/mathutils/matrix_vector_mult.lo util/mathutils/matrixexp.lo util/mathutils/minimum.lo util/mathutils/norm.lo util/mathutils/normsq.lo util/mathutils/project.lo util/mathutils/random.lo util/mathutils/rcmult.lo util/mathutils/rect_transpose.lo util/mathutils/roots.lo util/mathutils/runge-kutta.lo util/mathutils/scale_vector.lo util/mathutils/splines.lo util/mathutils/sum_vector.lo util/mathutils/svd.lo util/mathutils/sym_linsolve.lo util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sympos_linsolve.lo util/mathutils/test_transpose.lo util/mathutils/testdummy.lo util/mathutils/testgram.lo util/mathutils/testspline.lo util/mathutils/testsvd.lo util/mathutils/testutils.lo util/mathutils/vector_add.lo util/mathutils/vector_dist.lo util/mathutils/zcopy_vector.lo util/mathutils/zdotc.lo util/mathutils/zdotu.lo util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_vector_mult.lo util/mathutils/znorm.lo util/mathutils/znormsq.lo util/mathutils/zrscale_vector.lo util/mathutils/zscale_vector.lo util/mathutils/zsum_vector.lo util/mathutils/zsym_linsolve.lo libtool: link: ar cru .libs/libmathutils.a util/mathutils/.libs/allocate.o util/mathutils/.libs/cabs.o util/mathutils/.libs/cadd.o util/mathutils/.libs/cconj.o util/mathutils/.libs/cmult.o util/mathutils/.libs/complex_zero.o util/mathutils/.libs/copy_vector.o util/mathutils/.libs/cprob.o util/mathutils/.libs/csub.o util/mathutils/.libs/dotp.o util/mathutils/.libs/eigensystem.o util/mathutils/.libs/expi.o util/mathutils/.libs/gram_schmidt.o util/mathutils/.libs/herm_matrix_mult.o util/mathutils/.libs/herm_matrix_vector_mult.o util/mathutils/.libs/icmult.o util/mathutils/.libs/init.o util/mathutils/.libs/integration.o util/mathutils/.libs/linsolve.o util/mathutils/.libs/matherr.o util/mathutils/.libs/matrix_add.o util/mathutils/.libs/matrix_elt.o util/mathutils/.libs/matrix_mult.o util/mathutils/.libs/matrix_sub.o util/mathutils/.libs/matrix_transpose.o util/mathutils/.libs/matrix_vector_mult.o util/mathutils/.libs/matrixexp.o util/mathutils/.libs/minimum.o util/mathutils/.libs/norm.o util/mathutils/.libs/normsq.o util/mathutils/.libs/project.o util/mathutils/.libs/random.o util/mathutils/.libs/rcmult.o util/mathutils/.libs/rect_transpose.o util/mathutils/.libs/roots.o util/mathutils/.libs/runge-kutta.o util/mathutils/.libs/scale_vector.o util/mathutils/.libs/splines.o util/mathutils/.libs/sum_vector.o util/mathutils/.libs/svd.o util/mathutils/.libs/sym_linsolve.o util/mathutils/.libs/sym_matrix_mult.o util/mathutils/.libs/sym_matrix_vector_mult.o util/mathutils/.libs/sympos_linsolve.o util/mathutils/.libs/test_transpose.o util/mathutils/.libs/testdummy.o util/mathutils/.libs/testgram.o util/mathutils/.libs/testspline.o util/mathutils/.libs/testsvd.o util/mathutils/.libs/testutils.o util/mathutils/.libs/vector_add.o util/mathutils/.libs/vector_dist.o util/mathutils/.libs/zcopy_vector.o util/mathutils/.libs/zdotc.o util/mathutils/.libs/zdotu.o util/mathutils/.libs/zmatrix_add.o util/mathutils/.libs/zmatrix_mult.o util/mathutils/.libs/zmatrix_sub.o util/mathutils/.libs/zmatrix_transpose.o util/mathutils/.libs/zmatrix_vector_mult.o util/mathutils/.libs/znorm.o util/mathutils/.libs/znormsq.o util/mathutils/.libs/zrscale_vector.o util/mathutils/.libs/zscale_vector.o util/mathutils/.libs/zsum_vector.o util/mathutils/.libs/zsym_linsolve.o libtool: link: ranlib .libs/libmathutils.a libtool: link: ( cd ".libs" && rm -f "libmathutils.la" && ln -s "../libmathutils.la" "libmathutils.la" ) make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o libmathutils.la -lmuparser -lsundials_nvecserial -lsundials_cvode libtool: link: g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o ./.libs/libmathutils.a -lmuparser -lsundials_nvecserial -lsundials_cvode make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' + . /etc/profile.d/modules.sh ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 66 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module unload mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man::;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man:: ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ~/build/BUILD/bionetgen-BioNetGen-2.4.0 ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + popd + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.00cHeV + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386 ++ dirname /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386 + cd bionetgen-BioNetGen-2.4.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386 'INSTALL=/usr/bin/install -p' -C bng2/Network3/src make: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -p run_network '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/bin' libtool: install: /usr/bin/install -p run_network /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/bin/run_network make[1]: Nothing to be done for 'install-data-am'. make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' make: Leaving directory '/builddir/build/BUILD/bionetgen-BioNetGen-2.4.0/bng2/Network3/src' + mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/perl5/vendor_perl/BioNetGen mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/perl5' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/perl5/vendor_perl' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/perl5/vendor_perl/BioNetGen' + cp -r bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/perl5/vendor_perl/BioNetGen/ + cp bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/perl5/vendor_perl/BioNetGen/ + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2.4.0-3.fc30 --unique-debug-suffix -2.4.0-3.fc30.i386 --unique-debug-src-base bionetgen-2.4.0-3.fc30.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-BioNetGen-2.4.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/bin/run_network extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/bin/run_network /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 967 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: bionetgen-2.4.0-3.fc30.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.PrSLK0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.GEOii6 + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 + DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/doc/bionetgen + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/doc/bionetgen + cp -pr README.md /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/doc/bionetgen + cp -pr bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/doc/bionetgen + cp -pr bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/doc/bionetgen + cp -pr bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/doc/bionetgen + exit 0 + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 + LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/licenses/bionetgen + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/licenses/bionetgen + cp -pr LICENSE /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386/usr/share/licenses/bionetgen + exit 0 Provides: bionetgen = 2.4.0-3.fc30 bionetgen(x86-32) = 2.4.0-3.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libm.so.6 libm.so.6(GLIBC_2.0) libmuparser.so.2 libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) libsundials_cvode.so.3 libsundials_nvecserial.so.3 rtld(GNU_HASH) Processing files: bionetgen-perl-2.4.0-3.fc30.noarch Provides: bionetgen-perl = 2.4.0-3.fc30 perl(Viz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings) Processing files: bionetgen-debugsource-2.4.0-3.fc30.i686 Provides: bionetgen-debugsource = 2.4.0-3.fc30 bionetgen-debugsource(x86-32) = 2.4.0-3.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bionetgen-debuginfo-2.4.0-3.fc30.i686 Provides: bionetgen-debuginfo = 2.4.0-3.fc30 bionetgen-debuginfo(x86-32) = 2.4.0-3.fc30 debuginfo(build-id) = 7a4d8254e10afeb79a1f367acae4c8d89f11ebb9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bionetgen-debugsource(x86-32) = 2.4.0-3.fc30 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386 Wrote: /builddir/build/RPMS/bionetgen-2.4.0-3.fc30.i686.rpm Wrote: /builddir/build/RPMS/bionetgen-perl-2.4.0-3.fc30.noarch.rpm Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.4.0-3.fc30.i686.rpm Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.4.0-3.fc30.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.dGlWdj + umask 022 + cd /builddir/build/BUILD + cd bionetgen-BioNetGen-2.4.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.4.0-3.fc30.i386 + exit 0 Finish: rpmbuild bionetgen-2.4.0-3.fc30.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/829451-fedora-rawhide-i386-1543191826.840001/root/var/log/dnf.log /var/lib/mock/829451-fedora-rawhide-i386-1543191826.840001/root/var/log/dnf.librepo.log /var/lib/mock/829451-fedora-rawhide-i386-1543191826.840001/root/var/log/dnf.rpm.log Finish: build phase for bionetgen-2.4.0-3.fc30.src.rpm INFO: Done(/var/lib/copr-rpmbuild/results/bionetgen-2.4.0-3.fc30.src.rpm) Config(child) 1 minutes 45 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run