%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  MCseqReplic
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Monte Carlo Simulations of Time Changes in Sequences

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.0.0
Requires:         R-core >= 3.0.0
BuildArch:        noarch
BuildRequires:    R-CRAN-TraMineR >= 2.2.2
BuildRequires:    R-CRAN-WeightedCluster >= 1.6
BuildRequires:    R-CRAN-aricode 
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-doSNOW 
BuildRequires:    R-CRAN-iterators 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-vegan 
BuildRequires:    R-CRAN-wCorr 
Requires:         R-CRAN-TraMineR >= 2.2.2
Requires:         R-CRAN-WeightedCluster >= 1.6
Requires:         R-CRAN-aricode 
Requires:         R-CRAN-doParallel 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-doSNOW 
Requires:         R-CRAN-iterators 
Requires:         R-stats 
Requires:         R-CRAN-vegan 
Requires:         R-CRAN-wCorr 

%description
Generates replicated sets of sequences with Monte Carlo simulated timing
changes and computes various indicators for evaluating effects of timing
uncertainty on sequence analysis results. See Ritschard, G. and Liao, T.F.
(2026): "Assessing the Impact of Timing Errors in Sequence Analysis".
International Journal of Social Research Methodology
<doi:10.1080/13645579.2026.2666297>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}