%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  tabs
%global packver   0.1.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.1
Release:          1%{?dist}%{?buildtag}
Summary:          Temporal Altitudinal Biogeographic Shifts

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-ape 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-htmltools 
BuildRequires:    R-CRAN-htmlwidgets 
BuildRequires:    R-CRAN-httr 
BuildRequires:    R-CRAN-jsonlite 
BuildRequires:    R-CRAN-geojsonio 
BuildRequires:    R-CRAN-leaflet 
BuildRequires:    R-CRAN-leaftime 
BuildRequires:    R-CRAN-leaflet.extras 
BuildRequires:    R-CRAN-mapedit 
BuildRequires:    R-CRAN-qs2 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-sf 
BuildRequires:    R-CRAN-stringi 
BuildRequires:    R-CRAN-terra 
BuildRequires:    R-CRAN-gpkg 
BuildRequires:    R-CRAN-RSQLite 
Requires:         R-CRAN-ape 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-htmltools 
Requires:         R-CRAN-htmlwidgets 
Requires:         R-CRAN-httr 
Requires:         R-CRAN-jsonlite 
Requires:         R-CRAN-geojsonio 
Requires:         R-CRAN-leaflet 
Requires:         R-CRAN-leaftime 
Requires:         R-CRAN-leaflet.extras 
Requires:         R-CRAN-mapedit 
Requires:         R-CRAN-qs2 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-sf 
Requires:         R-CRAN-stringi 
Requires:         R-CRAN-terra 
Requires:         R-CRAN-gpkg 
Requires:         R-CRAN-RSQLite 

%description
A standardized workflow to reconstruct spatial configurations of
altitude-bounded biogeographic systems over time. For example, 'tabs' can
model how island archipelagos expand or contract with changing sea levels
or how alpine biomes shift in response to tree line movements. It provides
functionality to account for various geophysical processes such as crustal
deformation and other tectonic changes, allowing for a more accurate
representation of biogeographic system dynamics. For more information see
De Groeve et al. (2025) <doi:10.3897/arphapreprints.e151900>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}