%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  sae4health
%global packver   1.2.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.3
Release:          1%{?dist}%{?buildtag}
Summary:          Small Area Estimation for Key Health and Demographic Indicators from Household Surveys

License:          AGPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.3
Requires:         R-core >= 4.3
BuildArch:        noarch
BuildRequires:    R-CRAN-shiny >= 1.7.4
BuildRequires:    R-CRAN-golem >= 0.4.1
BuildRequires:    R-CRAN-config 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-DT 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-grid 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-htmltools 
BuildRequires:    R-CRAN-htmlwidgets 
BuildRequires:    R-CRAN-leaflet 
BuildRequires:    R-CRAN-R6 
BuildRequires:    R-CRAN-sf 
BuildRequires:    R-CRAN-sp 
BuildRequires:    R-CRAN-shinyBS 
BuildRequires:    R-CRAN-shinydashboard 
BuildRequires:    R-CRAN-shinyFeedback 
BuildRequires:    R-CRAN-shinyjs 
BuildRequires:    R-CRAN-shinyWidgets 
BuildRequires:    R-CRAN-SUMMER 
BuildRequires:    R-CRAN-surveyPrev 
BuildRequires:    R-CRAN-survey 
BuildRequires:    R-CRAN-geodata 
BuildRequires:    R-CRAN-bookdown 
BuildRequires:    R-CRAN-markdown 
BuildRequires:    R-CRAN-haven 
BuildRequires:    R-CRAN-ggridges 
BuildRequires:    R-CRAN-ggthemes 
BuildRequires:    R-CRAN-RColorBrewer 
BuildRequires:    R-CRAN-viridisLite 
BuildRequires:    R-CRAN-scales 
BuildRequires:    R-CRAN-patchwork 
BuildRequires:    R-CRAN-leaflegend 
BuildRequires:    R-CRAN-leafsync 
BuildRequires:    R-methods 
BuildRequires:    R-graphics 
BuildRequires:    R-CRAN-plotly 
BuildRequires:    R-CRAN-readr 
BuildRequires:    R-CRAN-sn 
Requires:         R-CRAN-shiny >= 1.7.4
Requires:         R-CRAN-golem >= 0.4.1
Requires:         R-CRAN-config 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-DT 
Requires:         R-CRAN-ggplot2 
Requires:         R-grid 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-htmltools 
Requires:         R-CRAN-htmlwidgets 
Requires:         R-CRAN-leaflet 
Requires:         R-CRAN-R6 
Requires:         R-CRAN-sf 
Requires:         R-CRAN-sp 
Requires:         R-CRAN-shinyBS 
Requires:         R-CRAN-shinydashboard 
Requires:         R-CRAN-shinyFeedback 
Requires:         R-CRAN-shinyjs 
Requires:         R-CRAN-shinyWidgets 
Requires:         R-CRAN-SUMMER 
Requires:         R-CRAN-surveyPrev 
Requires:         R-CRAN-survey 
Requires:         R-CRAN-geodata 
Requires:         R-CRAN-bookdown 
Requires:         R-CRAN-markdown 
Requires:         R-CRAN-haven 
Requires:         R-CRAN-ggridges 
Requires:         R-CRAN-ggthemes 
Requires:         R-CRAN-RColorBrewer 
Requires:         R-CRAN-viridisLite 
Requires:         R-CRAN-scales 
Requires:         R-CRAN-patchwork 
Requires:         R-CRAN-leaflegend 
Requires:         R-CRAN-leafsync 
Requires:         R-methods 
Requires:         R-graphics 
Requires:         R-CRAN-plotly 
Requires:         R-CRAN-readr 
Requires:         R-CRAN-sn 

%description
Enables small area estimation (SAE) of health and demographic indicators
in low- and middle-income countries (LMICs). It powers an R 'shiny'
application for generating subnational estimates and prevalence maps of
150+ binary indicators from Demographic and Health Surveys (DHS). It
builds on the SAE analysis workflow from the 'surveyPrev' package. For
documentation, visit <https://sae4health.stat.uw.edu/>. Methodological
details can be found at Wu et al. (2025) <doi:10.48550/arXiv.2505.01467>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}