Warning: Permanently added '2620:52:6:1161:dead:beef:cafe:c144' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11157765-fedora-rawhide-i386 --chroot fedora-rawhide-i386 Version: 1.10 PID: 43536 Logging PID: 43538 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 11157765, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': '6520347b1ebf8d32b7bf6a01a4d04390d6306dd4', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jackorp/ruby-4.1-gems/openbabel', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'openbabel', 'package_version': '3.2.0-7', 'project_dirname': 'ruby-4.1-gems', 'project_name': 'ruby-4.1-gems', 'project_owner': 'jackorp', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jackorp/ruby-4.1-gems/fedora-rawhide-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None, 'repo_gpgcheck': False}, {'baseurl': 'https://download.copr.fedorainfracloud.org/results/jackorp/ruby-4.1-main/fedora-rawhide-i386/', 'id': 'copr_jackorp_ruby_4_1_main', 'name': 'Additional repo copr_jackorp_ruby_4_1_main', 'repo_gpgcheck': False}], 'sandbox': 'jackorp/ruby-4.1-gems--jackorp', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 1, 'submitter': 'jackorp', 'tags': [], 'task_id': '11157765-fedora-rawhide-i386', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jackorp/ruby-4.1-gems/openbabel /var/lib/copr-rpmbuild/workspace/workdir-916wou8h/openbabel --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jackorp/ruby-4.1-gems/openbabel', '/var/lib/copr-rpmbuild/workspace/workdir-916wou8h/openbabel', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-916wou8h/openbabel'... Running: git checkout 6520347b1ebf8d32b7bf6a01a4d04390d6306dd4 -- cmd: ['git', 'checkout', '6520347b1ebf8d32b7bf6a01a4d04390d6306dd4', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-916wou8h/openbabel rc: 0 stdout: stderr: Note: switching to '6520347b1ebf8d32b7bf6a01a4d04390d6306dd4'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 6520347 automatic import of openbabel Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-916wou8h/openbabel rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading openbabel-openbabel-3-2-0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o openbabel-openbabel-3-2-0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jackorp/ruby-4.1-gems/openbabel/openbabel-openbabel-3-2-0.tar.gz/md5/7ff7d2b8de07fa0507a7826f62d7045a/openbabel-openbabel-3-2-0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 36.06M 100 36.06M 0 0 51.39M 0 0 INFO: Reading stdout from command: md5sum openbabel-openbabel-3-2-0.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-916wou8h/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-916wou8h/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1792146448.536952 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.9 starting (python version = 3.14.5, NVR = mock-6.9-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-916wou8h/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-916wou8h/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1792146448.536952 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-916wou8h/openbabel/openbabel.spec) Config(fedora-rawhide-i686) Start: clean chroot Finish: clean chroot Mock Version: 6.9 INFO: Mock Version: 6.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1792146448.536952/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-27ee0ba2-2a45-4f67-be57-14adfc19667e INFO: Checking that a5edc76f79448546267223481743308eb2566b66f019ec071fe295ee6868e039 image matches host's architecture INFO: Copy content of container a5edc76f79448546267223481743308eb2566b66f019ec071fe295ee6868e039 to /var/lib/mock/fedora-rawhide-i686-bootstrap-1792146448.536952/root INFO: mounting a5edc76f79448546267223481743308eb2566b66f019ec071fe295ee6868e039 with podman image mount INFO: image a5edc76f79448546267223481743308eb2566b66f019ec071fe295ee6868e039 as /var/lib/containers/storage/overlay/8db1a22ff28cbed2fa350950c25bbc5899e8f4d3b387f9bcfc514eac7d8125c5/merged INFO: umounting image a5edc76f79448546267223481743308eb2566b66f019ec071fe295ee6868e039 (/var/lib/containers/storage/overlay/8db1a22ff28cbed2fa350950c25bbc5899e8f4d3b387f9bcfc514eac7d8125c5/merged) with podman image umount INFO: Removing image mock-bootstrap-27ee0ba2-2a45-4f67-be57-14adfc19667e INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1792146448.536952/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.1.0-1.fc46.x86_64 rpm-sequoia-1.10.3-1.fc46.x86_64 dnf5-5.4.6.0-1.fc46.x86_64 dnf5-plugins-5.4.6.0-1.fc46.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: local 100% | 7.9 KiB/s | 3.5 KiB | 00m00s Additional repo copr_jackorp_ruby_4_1_ 100% | 4.8 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 5.0 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash i686 0:5.3.20-1.fc46 local 8.6 MiB bzip2 i686 0:1.0.8-24.fc45 local 85.4 KiB coreutils i686 0:9.12-1.fc46 local 6.2 MiB cpio i686 0:2.15-10.fc45 local 1.1 MiB diffutils i686 0:3.12-6.fc45 local 1.6 MiB fedora-release noarch 0:46-0.1 local 0.0 B findutils i686 1:4.11.0-2.fc45 local 2.0 MiB gawk i686 0:5.4.1-1.fc45 local 2.2 MiB glibc-minimal-langpack i686 0:2.44.9000-5.fc46 local 0.0 B grep i686 0:3.12-4.fc45 local 1.0 MiB gzip i686 0:1.15-1.fc46 local 448.2 KiB info i686 0:7.3-3.fc45 local 370.9 KiB patch i686 0:2.8-6.fc46 local 233.7 KiB redhat-rpm-config noarch 0:345-4.fc46 local 184.2 KiB rpm-build i686 0:6.1.0-1.fc46 local 300.3 KiB sed i686 0:4.10-2.fc45 local 865.6 KiB shadow-utils i686 2:4.20.0-2.fc46 local 3.8 MiB tar i686 2:1.35-9.fc45 local 3.0 MiB unzip i686 0:6.0-71.fc45 local 451.5 KiB util-linux i686 0:2.42.4-2.fc46 local 3.4 MiB which i686 0:2.25-2.fc45 local 78.3 KiB xz i686 1:5.8.4-1.fc46 local 1.4 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-3.fc45 local 3.5 KiB add-determinism i686 0:0.7.3-3.fc45 local 2.0 MiB alternatives i686 0:1.33-6.fc45 local 61.3 KiB ansible-srpm-macros noarch 0:1-22.fc45 local 35.7 KiB audit-libs i686 0:4.2.1-2.fc45 local 400.3 KiB binutils i686 0:2.47.50-15.fc46 local 24.4 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-3.fc45 local 1.2 KiB bzip2-libs i686 0:1.0.8-24.fc45 local 79.7 KiB ca-certificates noarch 0:2026.2.90_v9.0.317-1.fc46 local 2.6 MiB cmake-srpm-macros noarch 0:4.3.0-5.fc45 local 524.0 B coreutils-common i686 0:9.12-1.fc46 local 11.5 MiB crypto-policies noarch 0:20260713-2.gitc42da77.fc45 local 134.3 KiB curl i686 0:8.23.0-1.fc46 local 489.5 KiB cyrus-sasl-lib i686 0:2.1.28-37.fc45 local 2.5 MiB debugedit i686 0:5.3-3.fc45 local 225.6 KiB dwz i686 0:0.17-3.fc45 local 309.1 KiB ed i686 0:1.22.6-1.fc46 local 149.7 KiB efi-srpm-macros noarch 0:6-9.fc45 local 40.3 KiB elfutils i686 0:0.196-1.fc46 local 3.2 MiB elfutils-debuginfod-client i686 0:0.196-1.fc46 local 78.3 KiB elfutils-libelf i686 0:0.196-1.fc46 local 1.4 MiB elfutils-libs i686 0:0.196-1.fc46 local 754.0 KiB erlang-srpm-macros noarch 0:0.4.0-1.fc46 local 2.0 KiB fedora-gpg-keys noarch 0:46-0.3 local 130.3 KiB fedora-release-common noarch 0:46-0.1 local 4.6 KiB fedora-release-identity-basic noarch 0:46-0.1 local 664.0 B fedora-repos noarch 0:46-0.3 local 4.9 KiB fedora-repos-rawhide noarch 0:46-0.3 local 2.2 KiB file i686 0:5.48-3.fc46 local 100.9 KiB file-libs i686 0:5.48-3.fc46 local 12.4 MiB filesystem i686 0:3.18-59.fc45 local 94.0 B filesystem-srpm-macros noarch 0:3.18-59.fc45 local 38.2 KiB fips-provider i686 0:1.5.3-1.fc46 local 3.9 MiB fonts-srpm-macros noarch 1:5.0.0-4.fc45 local 55.8 KiB forge-srpm-macros noarch 0:0.4.0-5.fc45 local 38.9 KiB fpc-srpm-macros noarch 0:1.3-17.fc45 local 144.0 B gap-srpm-macros noarch 0:2-3.fc45 local 2.1 KiB gdb-minimal i686 0:17.2-6.fc46 local 14.7 MiB gdbm-libs i686 1:1.26-1.fc46 local 132.7 KiB ghc-srpm-macros noarch 0:1.10-2.fc45 local 792.0 B glibc i686 0:2.44.9000-5.fc46 local 6.0 MiB glibc-common i686 0:2.44.9000-5.fc46 local 1.0 MiB glibc-gconv-extra i686 0:2.44.9000-5.fc46 local 7.2 MiB gmp i686 1:6.3.0-6.fc45 local 738.2 KiB gnat-srpm-macros noarch 0:7-3.fc45 local 1.0 KiB gnome-srpm-macros noarch 0:1.0-2.fc45 local 3.5 KiB gnulib-l10n noarch 0:20241231-4.fc45 local 655.0 KiB gnupg2 i686 0:2.4.9-18.fc45 local 6.6 MiB gnupg2-dirmngr i686 0:2.4.9-18.fc45 local 661.7 KiB gnupg2-gpg-agent i686 0:2.4.9-18.fc45 local 680.4 KiB gnupg2-gpgconf i686 0:2.4.9-18.fc45 local 253.8 KiB gnupg2-keyboxd i686 0:2.4.9-18.fc45 local 204.0 KiB gnupg2-verify i686 0:2.4.9-18.fc45 local 363.2 KiB gnutls i686 0:3.8.13-5.fc46 local 4.0 MiB go-srpm-macros noarch 0:3.8.0-3.fc45 local 61.9 KiB gpgverify noarch 0:2.2-5.fc45 local 8.7 KiB ima-evm-utils-libs i686 0:1.6.2-12.fc45 local 51.8 KiB jansson i686 0:2.14-5.fc45 local 84.2 KiB java-srpm-macros noarch 0:1-9.fc45 local 870.0 B json-c i686 0:0.18-9.fc45 local 85.9 KiB kernel-srpm-macros noarch 0:1.0-30.fc45 local 1.9 KiB keyutils-libs i686 0:1.6.3-8.fc45 local 53.4 KiB krb5-libs i686 0:1.22.2-9.fc45 local 2.3 MiB libacl i686 0:2.4.0-2.fc45 local 43.1 KiB libarchive i686 0:3.8.9-2.fc46 local 1.0 MiB libassuan i686 0:2.5.7-6.fc45 local 167.1 KiB libattr i686 0:2.6.0-2.fc45 local 23.5 KiB libblkid i686 0:2.42.4-2.fc46 local 301.2 KiB libbrotli i686 0:1.2.0-6.fc45 local 850.8 KiB libcap i686 0:2.78-2.fc45 local 197.2 KiB libcap-ng i686 0:0.9.6-1.fc46 local 67.2 KiB libcbor i686 0:0.14.0-3.fc45 local 82.7 KiB libcom_err i686 0:1.47.4-2.fc45 local 62.2 KiB libcurl i686 0:8.23.0-1.fc46 local 1.1 MiB libeconf i686 0:0.7.9-4.fc45 local 64.0 KiB libevent i686 0:2.1.13-1.fc46 local 1.0 MiB libfdisk i686 0:2.42.4-2.fc46 local 431.7 KiB libffi i686 0:3.8.0-1.fc46 local 82.6 KiB libfido2 i686 0:1.17.0-6.fc46 local 259.9 KiB libfsverity i686 0:1.7-4.fc45 local 23.7 KiB libgcc i686 0:16.2.1-2.fc46.1 local 293.7 KiB libgcrypt i686 0:1.12.4-1.fc46 local 1.3 MiB libgomp i686 0:16.2.1-2.fc46.1 local 576.6 KiB libgpg-error i686 0:1.61-2.fc45 local 944.1 KiB libidn2 i686 0:2.3.8-4.fc45 local 551.7 KiB libksba i686 0:1.8.1-1.fc46 local 419.2 KiB liblastlog2 i686 0:2.42.4-2.fc46 local 32.1 KiB libmount i686 0:2.42.4-2.fc46 local 440.0 KiB libnghttp2 i686 0:1.69.0-6.fc46 local 169.5 KiB libnghttp3 i686 0:1.18.0-1.fc45 local 171.3 KiB libpfm i686 0:4.14.1-2.fc46 local 2.1 MiB libpkgconf i686 0:2.5.1-2.fc45 local 88.7 KiB libpsl i686 0:0.23.3-1.fc46 local 79.7 KiB libselinux i686 0:3.11-5.fc46 copr_base 220.5 KiB libselinux-utils i686 0:3.11-5.fc46 copr_base 262.0 KiB libsemanage i686 0:3.11-4.fc46 local 332.1 KiB libsepol i686 0:3.11-2.fc45 local 905.8 KiB libsmartcols i686 0:2.42.4-2.fc46 local 191.8 KiB libssh i686 0:0.12.2-1.fc45 local 763.2 KiB libssh-config noarch 0:0.12.2-1.fc45 local 277.0 B libstdc++ i686 0:16.2.1-2.fc46.1 local 3.1 MiB libtasn1 i686 0:4.21.0-2.fc45 local 179.9 KiB libtool-ltdl i686 0:2.6.2-1.fc46 local 73.3 KiB libunistring i686 0:1.1-12.fc45 local 1.7 MiB libusb1 i686 0:1.0.30-2.fc45 local 183.3 KiB libuuid i686 0:2.42.4-2.fc46 local 40.5 KiB libverto i686 0:0.3.2-13.fc45 local 24.6 KiB libxcrypt i686 0:4.5.2-4.fc45 local 304.5 KiB libxml2 i686 0:2.15.4-1.fc46 local 1.7 MiB libzstd i686 0:1.5.7-6.fc45 local 923.8 KiB linkdupes i686 0:0.7.3-3.fc45 local 784.5 KiB lua-libs i686 0:5.5.1-2.fc46 local 329.6 KiB lua-srpm-macros noarch 0:1-18.fc45 local 1.3 KiB lz4-libs i686 0:1.10.0-5.fc45 local 160.6 KiB meson-srpm-macros noarch 0:1.12.1-2.fc46 local 1.7 KiB mpfr i686 0:4.2.2-4.fc45 local 987.7 KiB ncurses-base noarch 0:6.6-3.fc45 local 329.7 KiB ncurses-libs i686 0:6.6-3.fc45 local 960.6 KiB nettle i686 0:4.0-5.fc45 local 792.0 KiB ngtcp2 i686 0:1.22.1-3.fc45 local 389.7 KiB ngtcp2-crypto-ossl i686 0:1.22.1-3.fc45 local 50.9 KiB npth i686 0:1.8-5.fc45 local 48.8 KiB ocaml-srpm-macros noarch 0:11-4.fc45 local 1.9 KiB openblas-srpm-macros noarch 0:2-23.fc46 local 124.0 B openldap i686 0:2.6.15-1.fc46 local 684.9 KiB openssl-libs i686 1:4.0.3-1.fc46 local 6.0 MiB p11-kit i686 0:0.26.5-1.fc45 local 2.7 MiB p11-kit-trust i686 0:0.26.5-1.fc45 local 416.5 KiB package-notes-srpm-macros noarch 0:0.20-2.fc45 local 1.6 KiB pam-libs i686 0:1.7.2-4.fc45 local 128.2 KiB pcre2 i686 0:10.47-1.fc45.2 local 705.0 KiB pcre2-syntax noarch 0:10.47-1.fc45.2 local 281.9 KiB perl-srpm-macros noarch 0:1-65.fc45 local 861.0 B pkgconf i686 0:2.5.1-2.fc45 local 87.2 KiB pkgconf-m4 noarch 0:2.5.1-2.fc45 local 14.3 KiB pkgconf-pkg-config i686 0:2.5.1-2.fc45 local 979.0 B policycoreutils i686 0:3.11-2.fc45 local 857.6 KiB popt i686 0:1.19-11.fc45 local 135.7 KiB publicsuffix-list-dafsa noarch 0:20260624-2.fc45 local 71.3 KiB pyproject-srpm-macros noarch 0:1.24.0-1.fc46 local 3.4 KiB python-srpm-macros noarch 0:3.15-2.fc45 local 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-3.fc45 local 500.0 B qt6-srpm-macros noarch 0:6.11.2-1.fc46 local 472.0 B readline i686 0:8.3-7.fc46 local 487.9 KiB redhat-systemd-presets noarch 0:102-3.fc45 local 1.0 KiB redhat-systemd-presets-common noarch 0:102-3.fc45 local 16.9 KiB rpm i686 0:6.1.0-1.fc46 local 3.0 MiB rpm-build-libs i686 0:6.1.0-1.fc46 local 283.0 KiB rpm-libs i686 0:6.1.0-1.fc46 local 1.1 MiB rpm-plugin-selinux i686 0:6.1.0-1.fc46 local 11.1 KiB rpm-sequoia i686 0:1.10.3-1.fc46 local 2.8 MiB rpm-sign-libs i686 0:6.1.0-1.fc46 local 34.9 KiB rust-srpm-macros noarch 0:28.5-2.fc45 local 5.5 KiB selinux-policy noarch 0:45.21-1.fc46 local 32.1 KiB selinux-policy-targeted noarch 0:45.21-1.fc46 local 19.0 MiB setup noarch 0:2.15.1-2.fc45 local 725.6 KiB sqlite-libs i686 0:3.53.4-1.fc45 local 1.7 MiB systemd-libs i686 0:262-3.fc46 local 2.7 MiB systemd-standalone-sysusers i686 0:262-3.fc46 local 959.5 KiB tpm2-tss i686 0:4.2.0-1.fc45 local 1.7 MiB tree-sitter-srpm-macros noarch 0:0.4.6-2.fc45 local 8.6 KiB util-linux-core i686 0:2.42.4-2.fc46 local 1.4 MiB xxhash-libs i686 0:0.8.4-1.fc46 local 117.3 KiB xz-libs i686 1:5.8.4-1.fc46 local 233.1 KiB zig-srpm-macros noarch 0:1-9.fc45 local 1.3 KiB zip i686 0:3.0-46.fc45 local 698.0 KiB zlib-ng-compat i686 0:2.3.3-6.fc45 local 185.0 KiB zstd i686 0:1.5.7-6.fc45 local 511.4 KiB Installing groups: build Transaction Summary: Installing: 190 packages Total size of inbound packages is 72 MiB. Need to download 222 KiB. After this operation, 228 MiB extra will be used (install 228 MiB, remove 0 B). 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publicsuffix-list-dafsa-0:202 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [182/190] libfido2-0:1.17.0-6.fc46.i686 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [183/190] libssh-config-0:0.12.2-1.fc45 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [184/190] libcbor-0:0.14.0-3.fc45.i686 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [185/190] selinux-policy-targeted-0:45. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [186/190] policycoreutils-0:3.11-2.fc45 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [187/190] selinux-policy-0:45.21-1.fc46 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [188/190] rpm-plugin-selinux-0:6.1.0-1. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [189/190] libselinux-0:3.11-5.fc46.i686 100% | 244.4 KiB/s | 108.3 KiB | 00m00s [190/190] libselinux-utils-0:3.11-5.fc4 100% | 166.6 KiB/s | 113.6 KiB | 00m01s -------------------------------------------------------------------------------- [190/190] Total 100% | 254.5 KiB/s | 221.9 KiB | 00m01s Running transaction [ 1/192] Verify package files 100% | 657.0 B/s | 190.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-59.fc45.i686 >>> Finished %pretrans scriptlet: filesystem-0:3.18-59.fc45.i686 >>> [RPM] /var/lib/mock/fedora-rawhide-i686-1792146448.536952/root/var/cache/dnf/copr_base-ec5a7f7bb89da841/packages/libselinux-3.11-5.fc46.i686.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID 57da3b7966cbd0a5: NOKEY >>> [RPM] failed to open /var/lib/mock/fedora-rawhide-i686-1792146448.536952/root/etc/group for id/name lookup: No such file or directory [ 2/192] Prepare transaction 100% | 2.4 KiB/s | 190.0 B | 00m00s [ 3/192] Installing libgcc-0:16.2.1-2. 100% | 144.3 MiB/s | 295.4 KiB | 00m00s [ 4/192] Installing redhat-systemd-pre 100% | 0.0 B/s | 1.5 KiB | 00m00s [ 5/192] Installing redhat-systemd-pre 100% | 0.0 B/s | 18.1 KiB | 00m00s [ 6/192] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 7/192] Installing publicsuffix-list- 100% | 0.0 B/s | 72.0 KiB | 00m00s [ 8/192] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 9/192] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.5 KiB | 00m00s [ 10/192] Installing fedora-gpg-keys-0: 100% | 29.6 MiB/s | 181.7 KiB | 00m00s [ 11/192] Installing fedora-repos-0:46- 100% | 0.0 B/s | 5.9 KiB | 00m00s [ 12/192] Installing fedora-release-com 100% | 7.8 MiB/s | 8.0 KiB | 00m00s [ 13/192] Installing fedora-release-0:4 100% | 15.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch >>> Finished sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 14/192] Installing setup-0:2.15.1-2.f 100% | 34.0 MiB/s | 731.3 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 15/192] Installing filesystem-0:3.18- 100% | 1.9 MiB/s | 253.1 KiB | 00m00s [ 16/192] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB | 00m00s [ 17/192] Installing pkgconf-m4-0:2.5.1 100% | 0.0 B/s | 14.7 KiB | 00m00s [ 18/192] Installing gnulib-l10n-0:2024 100% | 161.6 MiB/s | 661.9 KiB | 00m00s [ 19/192] Installing coreutils-common-0 100% | 312.5 MiB/s | 11.6 MiB | 00m00s [ 20/192] Installing ncurses-base-0:6.6 100% | 57.8 MiB/s | 355.3 KiB | 00m00s [ 21/192] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [ 22/192] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [ 23/192] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 24/192] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 25/192] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [ 26/192] Installing openblas-srpm-macr 100% | 0.0 B/s | 404.0 B | 00m00s [ 27/192] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [ 28/192] Installing meson-srpm-macros- 100% | 0.0 B/s | 1.9 KiB | 00m00s [ 29/192] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 30/192] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [ 31/192] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 32/192] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 33/192] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [ 34/192] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 35/192] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [ 36/192] Installing bash-0:5.3.20-1.fc 100% | 214.9 MiB/s | 8.6 MiB | 00m00s [ 37/192] Installing glibc-common-0:2.4 100% | 46.8 MiB/s | 1.0 MiB | 00m00s [ 38/192] Installing glibc-gconv-extra- 100% | 221.3 MiB/s | 7.3 MiB | 00m00s [ 39/192] Installing glibc-0:2.44.9000- 100% | 131.3 MiB/s | 6.0 MiB | 00m00s [ 40/192] Installing ncurses-libs-0:6.6 100% | 188.8 MiB/s | 966.6 KiB | 00m00s [ 41/192] Installing glibc-minimal-lang 100% | 20.2 KiB/s | 124.0 B | 00m00s [ 42/192] Installing crypto-policies-0: 100% | 19.5 MiB/s | 159.5 KiB | 00m00s [ 43/192] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [ 44/192] Installing zlib-ng-compat-0:2 100% | 181.5 MiB/s | 185.8 KiB | 00m00s [ 45/192] Installing bzip2-libs-0:1.0.8 100% | 78.9 MiB/s | 80.8 KiB | 00m00s [ 46/192] Installing libgpg-error-0:1.6 100% | 44.2 MiB/s | 950.0 KiB | 00m00s [ 47/192] Installing readline-0:8.3-7.f 100% | 159.5 MiB/s | 490.0 KiB | 00m00s [ 48/192] Installing libstdc++-0:16.2.1 100% | 310.0 MiB/s | 3.1 MiB | 00m00s [ 49/192] Installing libzstd-0:1.5.7-6. 100% | 301.1 MiB/s | 925.1 KiB | 00m00s [ 50/192] Installing elfutils-libelf-0: 100% | 361.5 MiB/s | 1.4 MiB | 00m00s [ 51/192] Installing libassuan-0:2.5.7- 100% | 165.0 MiB/s | 169.0 KiB | 00m00s [ 52/192] Installing libgcrypt-0:1.12.4 100% | 260.2 MiB/s | 1.3 MiB | 00m00s [ 53/192] Installing libacl-0:2.4.0-2.f 100% | 0.0 B/s | 43.9 KiB | 00m00s [ 54/192] Installing gmp-1:6.3.0-6.fc45 100% | 241.0 MiB/s | 740.4 KiB | 00m00s [ 55/192] Installing systemd-libs-0:262 100% | 301.1 MiB/s | 2.7 MiB | 00m00s [ 56/192] Installing libuuid-0:2.42.4-2 100% | 40.6 MiB/s | 41.6 KiB | 00m00s [ 57/192] Installing popt-0:1.19-11.fc4 100% | 46.3 MiB/s | 142.3 KiB | 00m00s [ 58/192] Installing xz-libs-1:5.8.4-1. 100% | 228.7 MiB/s | 234.2 KiB | 00m00s [ 59/192] Installing sqlite-libs-0:3.53 100% | 280.3 MiB/s | 1.7 MiB | 00m00s [ 60/192] Installing npth-0:1.8-5.fc45. 100% | 48.7 MiB/s | 49.9 KiB | 00m00s [ 61/192] Installing elfutils-libs-0:0. 100% | 246.0 MiB/s | 755.8 KiB | 00m00s [ 62/192] Installing libblkid-0:2.42.4- 100% | 295.1 MiB/s | 302.2 KiB | 00m00s [ 63/192] Installing libsepol-0:3.11-2. 100% | 295.2 MiB/s | 906.7 KiB | 00m00s [ 64/192] Installing gnupg2-gpgconf-0:2 100% | 14.7 MiB/s | 255.9 KiB | 00m00s [ 65/192] Installing libxcrypt-0:4.5.2- 100% | 150.0 MiB/s | 307.2 KiB | 00m00s [ 66/192] Installing pcre2-0:10.47-1.fc 100% | 230.0 MiB/s | 706.4 KiB | 00m00s [ 67/192] Installing libselinux-0:3.11- 100% | 216.5 MiB/s | 221.7 KiB | 00m00s [ 68/192] Installing grep-0:3.12-4.fc45 100% | 47.9 MiB/s | 1.0 MiB | 00m00s [ 69/192] Installing sed-0:4.10-2.fc45. 100% | 40.6 MiB/s | 874.1 KiB | 00m00s [ 70/192] Installing findutils-1:4.11.0 100% | 85.6 MiB/s | 2.0 MiB | 00m00s [ 71/192] Installing json-c-0:0.18-9.fc 100% | 85.1 MiB/s | 87.2 KiB | 00m00s [ 72/192] Installing libtasn1-0:4.21.0- 100% | 177.5 MiB/s | 181.7 KiB | 00m00s [ 73/192] Installing libunistring-0:1.1 100% | 289.6 MiB/s | 1.7 MiB | 00m00s [ 74/192] Installing libidn2-0:2.3.8-4. 100% | 136.2 MiB/s | 557.8 KiB | 00m00s [ 75/192] Installing xz-1:5.8.4-1.fc46. 100% | 62.1 MiB/s | 1.4 MiB | 00m00s [ 76/192] Installing libmount-0:2.42.4- 100% | 215.4 MiB/s | 441.0 KiB | 00m00s [ 77/192] Installing gnupg2-verify-0:2. 100% | 20.9 MiB/s | 364.6 KiB | 00m00s [ 78/192] Installing mpfr-0:4.2.2-4.fc4 100% | 241.5 MiB/s | 989.3 KiB | 00m00s [ 79/192] Installing gawk-0:5.4.1-1.fc4 100% | 92.4 MiB/s | 2.2 MiB | 00m00s [ 80/192] Installing dwz-0:0.17-3.fc45. 100% | 17.8 MiB/s | 310.5 KiB | 00m00s [ 81/192] Installing libksba-0:1.8.1-1. 100% | 205.9 MiB/s | 421.8 KiB | 00m00s [ 82/192] Installing unzip-0:6.0-71.fc4 100% | 23.4 MiB/s | 455.0 KiB | 00m00s [ 83/192] Installing file-libs-0:5.48-3 100% | 561.6 MiB/s | 12.4 MiB | 00m00s [ 84/192] Installing file-0:5.48-3.fc46 100% | 5.6 MiB/s | 102.4 KiB | 00m00s [ 85/192] Installing diffutils-0:3.12-6 100% | 65.1 MiB/s | 1.6 MiB | 00m00s [ 86/192] Installing libeconf-0:0.7.9-4 100% | 64.1 MiB/s | 65.7 KiB | 00m00s [ 87/192] Installing libattr-0:2.6.0-2. 100% | 23.9 MiB/s | 24.5 KiB | 00m00s [ 88/192] Installing libcap-ng-0:0.9.6- 100% | 67.5 MiB/s | 69.1 KiB | 00m00s [ 89/192] Installing audit-libs-0:4.2.1 100% | 196.7 MiB/s | 402.7 KiB | 00m00s [ 90/192] Installing pam-libs-0:1.7.2-4 100% | 127.4 MiB/s | 130.5 KiB | 00m00s [ 91/192] Installing libcap-0:2.78-2.fc 100% | 11.0 MiB/s | 202.2 KiB | 00m00s [ 92/192] Installing libsemanage-0:3.11 100% | 163.0 MiB/s | 333.9 KiB | 00m00s [ 93/192] Installing libsmartcols-0:2.4 100% | 188.4 MiB/s | 193.0 KiB | 00m00s [ 94/192] Installing alternatives-0:1.3 100% | 3.6 MiB/s | 62.8 KiB | 00m00s [ 95/192] Installing lua-libs-0:5.5.1-2 100% | 161.6 MiB/s | 331.1 KiB | 00m00s [ 96/192] Installing libffi-0:3.8.0-1.f 100% | 82.0 MiB/s | 84.0 KiB | 00m00s [ 97/192] Installing p11-kit-0:0.26.5-1 100% | 102.1 MiB/s | 2.8 MiB | 00m00s [ 98/192] Installing p11-kit-trust-0:0. 100% | 15.1 MiB/s | 418.2 KiB | 00m00s [ 99/192] Installing ngtcp2-0:1.22.1-3. 100% | 127.4 MiB/s | 391.3 KiB | 00m00s [100/192] Installing util-linux-core-0: 100% | 58.4 MiB/s | 1.5 MiB | 00m00s [101/192] Installing liblastlog2-0:2.42 100% | 4.8 MiB/s | 34.2 KiB | 00m00s [102/192] Installing zip-0:3.0-46.fc45. 100% | 32.6 MiB/s | 701.9 KiB | 00m00s [103/192] Installing gnupg2-keyboxd-0:2 100% | 28.6 MiB/s | 205.2 KiB | 00m00s [104/192] Installing libpsl-0:0.23.3-1. 100% | 78.9 MiB/s | 80.8 KiB | 00m00s [105/192] Installing tar-2:1.35-9.fc45. 100% | 107.7 MiB/s | 3.0 MiB | 00m00s [106/192] Installing linkdupes-0:0.7.3- 100% | 40.4 MiB/s | 785.9 KiB | 00m00s [107/192] Installing libselinux-utils-0 100% | 13.5 MiB/s | 276.3 KiB | 00m00s [108/192] Installing libfdisk-0:2.42.4- 100% | 211.3 MiB/s | 432.7 KiB | 00m00s [109/192] Installing fips-provider-0:1. 100% | 322.9 MiB/s | 3.9 MiB | 00m00s [110/192] Installing openssl-libs-1:4.0 100% | 298.9 MiB/s | 6.0 MiB | 00m00s [111/192] Installing coreutils-0:9.12-1 100% | 141.8 MiB/s | 6.2 MiB | 00m00s [112/192] Installing ca-certificates-0: 100% | 1.3 MiB/s | 2.5 MiB | 00m02s [113/192] Installing util-linux-0:2.42. 100% | 77.8 MiB/s | 3.5 MiB | 00m00s [114/192] Installing policycoreutils-0: 100% | 27.9 MiB/s | 886.0 KiB | 00m00s [115/192] Installing selinux-policy-0:4 100% | 1.8 MiB/s | 34.5 KiB | 00m00s [116/192] Installing selinux-policy-tar 100% | 148.5 MiB/s | 15.2 MiB | 00m00s [117/192] Installing gzip-0:1.15-1.fc46 100% | 22.2 MiB/s | 453.8 KiB | 00m00s [118/192] Installing rpm-sequoia-0:1.10 100% | 310.0 MiB/s | 2.8 MiB | 00m00s [119/192] Installing libfsverity-0:1.7- 100% | 24.1 MiB/s | 24.7 KiB | 00m00s [120/192] Installing libevent-0:2.1.13- 100% | 256.0 MiB/s | 1.0 MiB | 00m00s [121/192] Installing ngtcp2-crypto-ossl 100% | 50.5 MiB/s | 51.7 KiB | 00m00s [122/192] Installing libusb1-0:1.0.30-2 100% | 12.9 MiB/s | 185.0 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.i686 >>> Finished sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.i686 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [123/192] Installing tpm2-tss-0:4.2.0-1 100% | 214.2 MiB/s | 1.7 MiB | 00m00s [124/192] Installing ima-evm-utils-libs 100% | 51.8 MiB/s | 53.1 KiB | 00m00s [125/192] Installing gnupg2-gpg-agent-0 100% | 21.6 MiB/s | 684.4 KiB | 00m00s [126/192] Installing nettle-0:4.0-5.fc4 100% | 194.1 MiB/s | 795.1 KiB | 00m00s [127/192] Installing gnutls-0:3.8.13-5. 100% | 306.3 MiB/s | 4.0 MiB | 00m00s [128/192] Installing zstd-0:1.5.7-6.fc4 100% | 26.5 MiB/s | 514.9 KiB | 00m00s [129/192] Installing libxml2-0:2.15.4-1 100% | 77.2 MiB/s | 1.7 MiB | 00m00s [130/192] Installing bzip2-0:1.0.8-24.f 100% | 5.5 MiB/s | 89.9 KiB | 00m00s [131/192] Installing add-determinism-0: 100% | 92.5 MiB/s | 2.0 MiB | 00m00s [132/192] Installing build-reproducibil 100% | 0.0 B/s | 1.5 KiB | 00m00s [133/192] Installing cpio-0:2.15-10.fc4 100% | 55.5 MiB/s | 1.1 MiB | 00m00s [134/192] Installing ed-0:1.22.6-1.fc46 100% | 9.3 MiB/s | 152.0 KiB | 00m00s [135/192] Installing patch-0:2.8-6.fc46 100% | 14.4 MiB/s | 235.2 KiB | 00m00s [136/192] Installing jansson-0:2.14-5.f 100% | 83.6 MiB/s | 85.6 KiB | 00m00s [137/192] Installing libpfm-0:4.14.1-2. 100% | 419.1 MiB/s | 2.1 MiB | 00m00s [138/192] Installing lz4-libs-0:1.10.0- 100% | 157.9 MiB/s | 161.7 KiB | 00m00s [139/192] Installing libarchive-0:3.8.9 100% | 261.1 MiB/s | 1.0 MiB | 00m00s [140/192] Installing libgomp-0:16.2.1-2 100% | 282.2 MiB/s | 578.0 KiB | 00m00s [141/192] Installing libpkgconf-0:2.5.1 100% | 87.7 MiB/s | 89.8 KiB | 00m00s [142/192] Installing pkgconf-0:2.5.1-2. 100% | 5.5 MiB/s | 89.7 KiB | 00m00s [143/192] Installing pkgconf-pkg-config 100% | 117.7 KiB/s | 1.8 KiB | 00m00s [144/192] Installing libtool-ltdl-0:2.6 100% | 72.6 MiB/s | 74.4 KiB | 00m00s [145/192] Installing gdbm-libs-1:1.26-1 100% | 131.2 MiB/s | 134.4 KiB | 00m00s [146/192] Installing cyrus-sasl-lib-0:2 100% | 108.2 MiB/s | 2.5 MiB | 00m00s [147/192] Installing openldap-0:2.6.15- 100% | 168.1 MiB/s | 688.7 KiB | 00m00s [148/192] Installing gnupg2-dirmngr-0:2 100% | 25.0 MiB/s | 664.5 KiB | 00m00s [149/192] Installing gnupg2-0:2.4.9-18. 100% | 177.8 MiB/s | 6.6 MiB | 00m00s [150/192] Installing gpgverify-0:2.2-5. 100% | 0.0 B/s | 9.4 KiB | 00m00s [151/192] Installing systemd-standalone 100% | 49.3 MiB/s | 960.0 KiB | 00m00s [152/192] Installing rpm-libs-0:6.1.0-1 100% | 277.5 MiB/s | 1.1 MiB | 00m00s [153/192] Installing rpm-sign-libs-0:6. 100% | 0.0 B/s | 35.7 KiB | 00m00s [154/192] Installing rpm-build-libs-0:6 100% | 277.2 MiB/s | 283.8 KiB | 00m00s [155/192] Installing xxhash-libs-0:0.8. 100% | 115.9 MiB/s | 118.7 KiB | 00m00s [156/192] Installing libbrotli-0:1.2.0- 100% | 208.3 MiB/s | 853.1 KiB | 00m00s [157/192] Installing libnghttp2-0:1.69. 100% | 166.6 MiB/s | 170.6 KiB | 00m00s [158/192] Installing libnghttp3-0:1.18. 100% | 168.6 MiB/s | 172.7 KiB | 00m00s [159/192] Installing keyutils-libs-0:1. 100% | 53.5 MiB/s | 54.8 KiB | 00m00s [160/192] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 63.2 KiB | 00m00s [161/192] Installing libverto-0:0.3.2-1 100% | 25.8 MiB/s | 26.4 KiB | 00m00s [162/192] Installing krb5-libs-0:1.22.2 100% | 261.5 MiB/s | 2.4 MiB | 00m00s [163/192] Installing libcbor-0:0.14.0-3 100% | 82.2 MiB/s | 84.1 KiB | 00m00s [164/192] Installing libfido2-0:1.17.0- 100% | 127.6 MiB/s | 261.4 KiB | 00m00s [165/192] Installing libssh-0:0.12.2-1. 100% | 249.1 MiB/s | 765.3 KiB | 00m00s [166/192] Installing libcurl-0:8.23.0-1 100% | 280.7 MiB/s | 1.1 MiB | 00m00s [167/192] Installing elfutils-debuginfo 100% | 4.4 MiB/s | 80.6 KiB | 00m00s [168/192] Installing binutils-0:2.47.50 100% | 260.2 MiB/s | 24.5 MiB | 00m00s [169/192] Installing elfutils-0:0.196-1 100% | 117.1 MiB/s | 3.2 MiB | 00m00s [170/192] Installing gdb-minimal-0:17.2 100% | 245.4 MiB/s | 14.7 MiB | 00m00s [171/192] Installing debugedit-0:5.3-3. 100% | 12.4 MiB/s | 228.9 KiB | 00m00s [172/192] Installing curl-0:8.23.0-1.fc 100% | 17.2 MiB/s | 492.1 KiB | 00m00s [173/192] Installing rpm-0:6.1.0-1.fc46 100% | 51.9 MiB/s | 2.5 MiB | 00m00s [174/192] Installing cmake-srpm-macros- 100% | 0.0 B/s | 804.0 B | 00m00s [175/192] Installing efi-srpm-macros-0: 100% | 40.3 MiB/s | 41.3 KiB | 00m00s [176/192] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [177/192] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [178/192] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.6 KiB | 00m00s [179/192] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [180/192] Installing redhat-rpm-config- 100% | 93.0 MiB/s | 190.4 KiB | 00m00s [181/192] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [182/192] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [183/192] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 63.0 KiB | 00m00s [184/192] Installing R-srpm-macros-0:1. 100% | 0.0 B/s | 4.4 KiB | 00m00s [185/192] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [186/192] Installing rpm-build-0:6.1.0- 100% | 15.9 MiB/s | 310.3 KiB | 00m00s [187/192] Installing erlang-srpm-macros 100% | 0.0 B/s | 2.6 KiB | 00m00s [188/192] Installing pyproject-srpm-mac 100% | 0.0 B/s | 4.0 KiB | 00m00s [189/192] Installing rpm-plugin-selinux 100% | 11.7 MiB/s | 11.9 KiB | 00m00s [190/192] Installing which-0:2.25-2.fc4 100% | 4.6 MiB/s | 80.5 KiB | 00m00s [191/192] Installing shadow-utils-2:4.2 100% | 105.5 MiB/s | 3.9 MiB | 00m00s [192/192] Installing info-0:7.3-3.fc45. 100% | 39.6 KiB/s | 371.3 KiB | 00m09s Warning: skipped OpenPGP checks for 190 packages from repositories: copr_base, local Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-3.fc45.noarch add-determinism-0.7.3-3.fc45.i686 alternatives-1.33-6.fc45.i686 ansible-srpm-macros-1-22.fc45.noarch audit-libs-4.2.1-2.fc45.i686 bash-5.3.20-1.fc46.i686 binutils-2.47.50-15.fc46.i686 build-reproducibility-srpm-macros-0.7.3-3.fc45.noarch bzip2-1.0.8-24.fc45.i686 bzip2-libs-1.0.8-24.fc45.i686 ca-certificates-2026.2.90_v9.0.317-1.fc46.noarch cmake-srpm-macros-4.3.0-5.fc45.noarch coreutils-9.12-1.fc46.i686 coreutils-common-9.12-1.fc46.i686 cpio-2.15-10.fc45.i686 crypto-policies-20260713-2.gitc42da77.fc45.noarch curl-8.23.0-1.fc46.i686 cyrus-sasl-lib-2.1.28-37.fc45.i686 debugedit-5.3-3.fc45.i686 diffutils-3.12-6.fc45.i686 dwz-0.17-3.fc45.i686 ed-1.22.6-1.fc46.i686 efi-srpm-macros-6-9.fc45.noarch elfutils-0.196-1.fc46.i686 elfutils-debuginfod-client-0.196-1.fc46.i686 elfutils-libelf-0.196-1.fc46.i686 elfutils-libs-0.196-1.fc46.i686 erlang-srpm-macros-0.4.0-1.fc46.noarch fedora-gpg-keys-46-0.3.noarch fedora-release-46-0.1.noarch fedora-release-common-46-0.1.noarch fedora-release-identity-basic-46-0.1.noarch fedora-repos-46-0.3.noarch fedora-repos-rawhide-46-0.3.noarch file-5.48-3.fc46.i686 file-libs-5.48-3.fc46.i686 filesystem-3.18-59.fc45.i686 filesystem-srpm-macros-3.18-59.fc45.noarch findutils-4.11.0-2.fc45.i686 fips-provider-1.5.3-1.fc46.i686 fonts-srpm-macros-5.0.0-4.fc45.noarch forge-srpm-macros-0.4.0-5.fc45.noarch fpc-srpm-macros-1.3-17.fc45.noarch gap-srpm-macros-2-3.fc45.noarch gawk-5.4.1-1.fc45.i686 gdb-minimal-17.2-6.fc46.i686 gdbm-libs-1.26-1.fc46.i686 ghc-srpm-macros-1.10-2.fc45.noarch glibc-2.44.9000-5.fc46.i686 glibc-common-2.44.9000-5.fc46.i686 glibc-gconv-extra-2.44.9000-5.fc46.i686 glibc-minimal-langpack-2.44.9000-5.fc46.i686 gmp-6.3.0-6.fc45.i686 gnat-srpm-macros-7-3.fc45.noarch gnome-srpm-macros-1.0-2.fc45.noarch gnulib-l10n-20241231-4.fc45.noarch gnupg2-2.4.9-18.fc45.i686 gnupg2-dirmngr-2.4.9-18.fc45.i686 gnupg2-gpg-agent-2.4.9-18.fc45.i686 gnupg2-gpgconf-2.4.9-18.fc45.i686 gnupg2-keyboxd-2.4.9-18.fc45.i686 gnupg2-verify-2.4.9-18.fc45.i686 gnutls-3.8.13-5.fc46.i686 go-srpm-macros-3.8.0-3.fc45.noarch gpgverify-2.2-5.fc45.noarch grep-3.12-4.fc45.i686 gzip-1.15-1.fc46.i686 ima-evm-utils-libs-1.6.2-12.fc45.i686 info-7.3-3.fc45.i686 jansson-2.14-5.fc45.i686 java-srpm-macros-1-9.fc45.noarch json-c-0.18-9.fc45.i686 kernel-srpm-macros-1.0-30.fc45.noarch keyutils-libs-1.6.3-8.fc45.i686 krb5-libs-1.22.2-9.fc45.i686 libacl-2.4.0-2.fc45.i686 libarchive-3.8.9-2.fc46.i686 libassuan-2.5.7-6.fc45.i686 libattr-2.6.0-2.fc45.i686 libblkid-2.42.4-2.fc46.i686 libbrotli-1.2.0-6.fc45.i686 libcap-2.78-2.fc45.i686 libcap-ng-0.9.6-1.fc46.i686 libcbor-0.14.0-3.fc45.i686 libcom_err-1.47.4-2.fc45.i686 libcurl-8.23.0-1.fc46.i686 libeconf-0.7.9-4.fc45.i686 libevent-2.1.13-1.fc46.i686 libfdisk-2.42.4-2.fc46.i686 libffi-3.8.0-1.fc46.i686 libfido2-1.17.0-6.fc46.i686 libfsverity-1.7-4.fc45.i686 libgcc-16.2.1-2.fc46.1.i686 libgcrypt-1.12.4-1.fc46.i686 libgomp-16.2.1-2.fc46.1.i686 libgpg-error-1.61-2.fc45.i686 libidn2-2.3.8-4.fc45.i686 libksba-1.8.1-1.fc46.i686 liblastlog2-2.42.4-2.fc46.i686 libmount-2.42.4-2.fc46.i686 libnghttp2-1.69.0-6.fc46.i686 libnghttp3-1.18.0-1.fc45.i686 libpfm-4.14.1-2.fc46.i686 libpkgconf-2.5.1-2.fc45.i686 libpsl-0.23.3-1.fc46.i686 libselinux-3.11-5.fc46.i686 libselinux-utils-3.11-5.fc46.i686 libsemanage-3.11-4.fc46.i686 libsepol-3.11-2.fc45.i686 libsmartcols-2.42.4-2.fc46.i686 libssh-0.12.2-1.fc45.i686 libssh-config-0.12.2-1.fc45.noarch libstdc++-16.2.1-2.fc46.1.i686 libtasn1-4.21.0-2.fc45.i686 libtool-ltdl-2.6.2-1.fc46.i686 libunistring-1.1-12.fc45.i686 libusb1-1.0.30-2.fc45.i686 libuuid-2.42.4-2.fc46.i686 libverto-0.3.2-13.fc45.i686 libxcrypt-4.5.2-4.fc45.i686 libxml2-2.15.4-1.fc46.i686 libzstd-1.5.7-6.fc45.i686 linkdupes-0.7.3-3.fc45.i686 lua-libs-5.5.1-2.fc46.i686 lua-srpm-macros-1-18.fc45.noarch lz4-libs-1.10.0-5.fc45.i686 meson-srpm-macros-1.12.1-2.fc46.noarch mpfr-4.2.2-4.fc45.i686 ncurses-base-6.6-3.fc45.noarch ncurses-libs-6.6-3.fc45.i686 nettle-4.0-5.fc45.i686 ngtcp2-1.22.1-3.fc45.i686 ngtcp2-crypto-ossl-1.22.1-3.fc45.i686 npth-1.8-5.fc45.i686 ocaml-srpm-macros-11-4.fc45.noarch openblas-srpm-macros-2-23.fc46.noarch openldap-2.6.15-1.fc46.i686 openssl-libs-4.0.3-1.fc46.i686 p11-kit-0.26.5-1.fc45.i686 p11-kit-trust-0.26.5-1.fc45.i686 package-notes-srpm-macros-0.20-2.fc45.noarch pam-libs-1.7.2-4.fc45.i686 patch-2.8-6.fc46.i686 pcre2-10.47-1.fc45.2.i686 pcre2-syntax-10.47-1.fc45.2.noarch perl-srpm-macros-1-65.fc45.noarch pkgconf-2.5.1-2.fc45.i686 pkgconf-m4-2.5.1-2.fc45.noarch pkgconf-pkg-config-2.5.1-2.fc45.i686 policycoreutils-3.11-2.fc45.i686 popt-1.19-11.fc45.i686 publicsuffix-list-dafsa-20260624-2.fc45.noarch pyproject-srpm-macros-1.24.0-1.fc46.noarch python-srpm-macros-3.15-2.fc45.noarch qt5-srpm-macros-5.15.18-3.fc45.noarch qt6-srpm-macros-6.11.2-1.fc46.noarch readline-8.3-7.fc46.i686 redhat-rpm-config-345-4.fc46.noarch redhat-systemd-presets-102-3.fc45.noarch redhat-systemd-presets-common-102-3.fc45.noarch rpm-6.1.0-1.fc46.i686 rpm-build-6.1.0-1.fc46.i686 rpm-build-libs-6.1.0-1.fc46.i686 rpm-libs-6.1.0-1.fc46.i686 rpm-plugin-selinux-6.1.0-1.fc46.i686 rpm-sequoia-1.10.3-1.fc46.i686 rpm-sign-libs-6.1.0-1.fc46.i686 rust-srpm-macros-28.5-2.fc45.noarch sed-4.10-2.fc45.i686 selinux-policy-45.21-1.fc46.noarch selinux-policy-targeted-45.21-1.fc46.noarch setup-2.15.1-2.fc45.noarch shadow-utils-4.20.0-2.fc46.i686 sqlite-libs-3.53.4-1.fc45.i686 systemd-libs-262-3.fc46.i686 systemd-standalone-sysusers-262-3.fc46.i686 tar-1.35-9.fc45.i686 tpm2-tss-4.2.0-1.fc45.i686 tree-sitter-srpm-macros-0.4.6-2.fc45.noarch unzip-6.0-71.fc45.i686 util-linux-2.42.4-2.fc46.i686 util-linux-core-2.42.4-2.fc46.i686 which-2.25-2.fc45.i686 xxhash-libs-0.8.4-1.fc46.i686 xz-5.8.4-1.fc46.i686 xz-libs-5.8.4-1.fc46.i686 zig-srpm-macros-1-9.fc45.noarch zip-3.0-46.fc45.i686 zlib-ng-compat-2.3.3-6.fc45.i686 zstd-1.5.7-6.fc45.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1788998400 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-7.fc46.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-i686-1792146448.536952/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-916wou8h/openbabel/openbabel.spec) Config(child) 0 minutes 26 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/openbabel-3.2.0-7.fc46.src.rpm) Config(fedora-rawhide-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1792146448.536952/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1792146448.536952/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1792146448.536952/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.1.0-1.fc46.x86_64 rpm-sequoia-1.10.3-1.fc46.x86_64 dnf5-5.4.6.0-1.fc46.x86_64 dnf5-plugins-5.4.6.0-1.fc46.x86_64 Finish: chroot init Start: build phase for openbabel-3.2.0-7.fc46.src.rpm Start: build setup for openbabel-3.2.0-7.fc46.src.rpm Building target platforms: i686 Building for target i686 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1788998400 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-7.fc46.src.rpm Updating and loading repositories: local 100% | 7.8 KiB/s | 3.5 KiB | 00m00s Additional repo copr_jackorp_ruby_4_1_ 100% | 4.9 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 5.0 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: ImageMagick i686 1:7.1.2.34-1.fc46 local 82.9 KiB boost-devel i686 0:1.90.0-13.fc45 local 142.7 MiB cmake i686 0:4.3.0-5.fc45 local 42.1 MiB desktop-file-utils i686 0:0.28-8.fc45 local 202.1 KiB dos2unix i686 0:7.5.7-1.fc46 local 842.8 KiB eigen3-devel noarch 0:5.0.1-4.fc45 local 9.5 MiB gcc-c++ i686 0:16.2.1-2.fc46.1 local 47.0 MiB inchi-devel i686 0:1.0.6-15.fc45 local 97.0 KiB libxml2-devel i686 0:2.15.4-1.fc46 local 6.7 MiB make i686 1:4.4.1-13.fc45 local 1.8 MiB perl-devel i686 4:5.44.0-527.fc45 local 4.1 MiB perl-generators noarch 0:1.16-10.fc45 local 21.8 KiB python3-devel i686 0:3.15.0-1.fc46 local 2.5 MiB python3-setuptools noarch 0:84.0.0-1.fc46 local 7.4 MiB rapidjson-devel i686 0:1.1.0^20241222git24b5e7a-5.fc45 local 785.8 KiB ruby-devel i686 0:4.1.0~20261012gitad29ad7ad8-40.fc46.1 copr_jackorp_ruby_4_1_main 1.6 MiB swig i686 0:4.5.1-2.fc46 local 6.4 MiB wxGTK-devel i686 0:3.2.12-1.fc46 local 74.4 KiB Installing dependencies: ImageMagick-libs i686 1:7.1.2.34-1.fc46 local 9.3 MiB LibRaw i686 0:0.22.2-1.fc45 local 2.7 MiB SDL3 i686 0:3.4.18-1.fc46 local 3.5 MiB adobe-mappings-cmap noarch 0:20231115-6.fc45 local 15.2 MiB adobe-mappings-cmap-deprecated noarch 0:20231115-6.fc45 local 582.1 KiB adobe-mappings-pdf noarch 0:20190401-13.fc45 local 4.4 MiB adwaita-cursor-theme noarch 0:51.0-1.fc46 local 11.4 MiB adwaita-icon-theme noarch 0:51.0-1.fc46 local 888.7 KiB adwaita-icon-theme-legacy noarch 0:46.2-12.fc45 local 2.1 MiB alsa-lib i686 0:1.2.16.1-2.fc45 local 1.6 MiB annobin-docs noarch 0:13.32-1.fc46 local 99.7 KiB annobin-plugin-gcc i686 0:13.32-1.fc46 local 727.6 KiB at-spi2-atk i686 0:2.62.1-1.fc46 local 292.5 KiB at-spi2-atk-devel i686 0:2.62.1-1.fc46 local 1.6 KiB at-spi2-core i686 0:2.62.1-1.fc46 local 1.6 MiB at-spi2-core-devel i686 0:2.62.1-1.fc46 local 4.5 MiB atk i686 0:2.62.1-1.fc46 local 259.9 KiB atk-devel i686 0:2.62.1-1.fc46 local 6.0 MiB avahi-glib i686 0:0.9~rc2-9.fc45 local 18.7 KiB avahi-libs i686 0:0.9~rc2-9.fc45 local 184.5 KiB boost i686 0:1.90.0-13.fc45 local 1.3 KiB boost-atomic i686 0:1.90.0-13.fc45 local 19.9 KiB boost-charconv i686 0:1.90.0-13.fc45 local 204.9 KiB boost-chrono i686 0:1.90.0-13.fc45 local 36.5 KiB boost-cobalt i686 0:1.90.0-13.fc45 local 608.4 KiB boost-container i686 0:1.90.0-13.fc45 local 64.6 KiB boost-context i686 0:1.90.0-13.fc45 local 11.6 KiB boost-contract i686 0:1.90.0-13.fc45 local 122.2 KiB boost-coroutine i686 0:1.90.0-13.fc45 local 20.1 KiB boost-date-time i686 0:1.90.0-13.fc45 local 11.4 KiB boost-fiber i686 0:1.90.0-13.fc45 local 82.1 KiB boost-filesystem i686 0:1.90.0-13.fc45 local 158.9 KiB boost-graph i686 0:1.90.0-13.fc45 local 365.4 KiB boost-iostreams i686 0:1.90.0-13.fc45 local 89.7 KiB boost-json i686 0:1.90.0-13.fc45 local 380.1 KiB boost-locale i686 0:1.90.0-13.fc45 local 714.3 KiB boost-log i686 0:1.90.0-13.fc45 local 1.5 MiB boost-math i686 0:1.90.0-13.fc45 local 595.7 KiB boost-nowide i686 0:1.90.0-13.fc45 local 19.9 KiB boost-numpy3 i686 0:1.90.0-13.fc45 local 56.8 KiB boost-process i686 0:1.90.0-13.fc45 local 77.0 KiB boost-program-options i686 0:1.90.0-13.fc45 local 275.8 KiB boost-python3 i686 0:1.90.0-13.fc45 local 263.7 KiB boost-random i686 0:1.90.0-13.fc45 local 28.6 KiB boost-regex i686 0:1.90.0-13.fc45 local 274.0 KiB boost-serialization i686 0:1.90.0-13.fc45 local 451.6 KiB boost-stacktrace i686 0:1.90.0-13.fc45 local 77.3 KiB boost-test i686 0:1.90.0-13.fc45 local 641.9 KiB boost-thread i686 0:1.90.0-13.fc45 local 127.0 KiB boost-timer i686 0:1.90.0-13.fc45 local 20.0 KiB boost-type_erasure i686 0:1.90.0-13.fc45 local 61.2 KiB boost-url i686 0:1.90.0-13.fc45 local 326.1 KiB boost-wave i686 0:1.90.0-13.fc45 local 943.0 KiB brotli i686 0:1.2.0-6.fc45 local 32.7 KiB brotli-devel i686 0:1.2.0-6.fc45 local 65.9 KiB bubblewrap i686 0:0.13.1-1.fc46 local 143.0 KiB bzip2-devel i686 0:1.0.8-24.fc45 local 309.8 KiB cairo i686 0:1.18.6-1.fc46 local 1.9 MiB cairo-devel i686 0:1.18.6-1.fc46 local 2.3 MiB cairo-gobject i686 0:1.18.6-1.fc46 local 30.3 KiB cairo-gobject-devel i686 0:1.18.6-1.fc46 local 7.0 KiB cdparanoia-libs i686 0:10.2-51.fc45 local 107.3 KiB cmake-data noarch 0:4.3.0-5.fc45 local 9.4 MiB cmake-filesystem i686 0:4.3.0-5.fc45 local 0.0 B cmake-rpm-macros noarch 0:4.3.0-5.fc45 local 8.4 KiB colord-libs i686 0:1.4.8-5.fc45 local 842.9 KiB cpp i686 0:16.2.1-2.fc46.1 local 42.9 MiB cups-filesystem noarch 1:2.4.19-4.fc45 local 0.0 B cups-libs i686 1:2.4.19-4.fc45 local 681.4 KiB dbus i686 1:1.16.2-6.fc45 local 0.0 B dbus-devel i686 1:1.16.2-6.fc45 local 131.7 KiB dbus-libs i686 1:1.16.2-6.fc45 local 380.9 KiB default-fonts-core-sans noarch 0:4.3-4.fc46 local 11.9 KiB duktape i686 0:2.7.0-12.fc45 local 614.9 KiB emacs-filesystem i686 1:31.1-1.fc46 local 0.0 B enchant2 i686 0:2.8.21-1.fc46 local 234.9 KiB expat i686 0:2.8.3-1.fc46 local 333.0 KiB fftw-libs-double i686 0:3.3.10-18.fc45 local 1.8 MiB flac-libs i686 0:1.5.0-9.fc45 local 638.1 KiB flexiblas i686 0:3.5.0-4.fc46 local 38.0 KiB flexiblas-netlib i686 0:3.5.0-4.fc46 local 18.5 MiB flexiblas-openblas-openmp i686 0:3.5.0-4.fc46 local 22.4 KiB flite i686 0:2.2-14.fc45 local 18.7 MiB fontconfig i686 0:2.18.3-3.fc46 local 1.0 MiB fontconfig-devel i686 0:2.18.3-3.fc46 local 127.7 KiB fonts-filesystem noarch 1:5.0.0-4.fc45 local 0.0 B freetype i686 0:2.14.3-2.fc45 local 918.1 KiB freetype-devel i686 0:2.14.3-2.fc45 local 8.6 MiB fribidi i686 0:1.0.17-2.fc46 local 392.5 KiB fribidi-devel i686 0:1.0.17-2.fc46 local 78.3 KiB gcc i686 0:16.2.1-2.fc46.1 local 117.8 MiB gcc-plugin-annobin i686 0:16.2.1-2.fc46.1 local 59.9 KiB gdk-pixbuf2 i686 0:2.44.8-3.fc46 local 2.6 MiB gdk-pixbuf2-devel i686 0:2.44.8-3.fc46 local 2.2 MiB gettext i686 0:1.0-4.fc46 local 17.8 MiB gettext-envsubst i686 0:1.0-4.fc46 local 86.8 KiB gettext-libs i686 0:1.0-4.fc46 local 2.4 MiB gettext-runtime i686 0:1.0-4.fc46 local 743.8 KiB glfw i686 1:3.4-8.fc45 local 407.9 KiB glib-networking i686 0:2.90.0-1.fc46 local 795.7 KiB glib2 i686 0:2.90.1-1.fc46 local 16.1 MiB glib2-devel i686 0:2.90.1-1.fc46 local 15.8 MiB glibc-devel i686 0:2.44.9000-5.fc46 local 2.3 MiB glycin-devel i686 0:2.2.2-1.fc46 local 151.6 KiB glycin-libs i686 0:2.2.2-1.fc46 local 5.5 MiB glycin-loaders i686 0:2.2.2-1.fc46 local 17.6 MiB google-droid-sans-fonts noarch 0:20200215-25.fc45 local 6.3 MiB google-noto-fonts-common noarch 0:20260901-4.fc46 local 17.7 KiB google-noto-sans-vf-fonts noarch 0:20260901-4.fc46 local 1.4 MiB graphene i686 0:1.10.8-6.fc45 local 221.8 KiB graphite2 i686 0:1.3.14-22.fc45 local 181.9 KiB graphite2-devel i686 0:1.3.14-22.fc45 local 49.3 KiB graphviz-libs i686 0:16.1.0-2.fc46 copr_base 1.4 MiB groff-base i686 0:1.24.2-1.fc46 local 4.2 MiB gsettings-desktop-schemas i686 0:51.0-1.fc46 local 6.7 MiB gsm i686 0:1.0.24-3.fc45 local 64.9 KiB gssdp i686 0:1.6.6-3.fc45 local 150.4 KiB gstreamer1 i686 0:1.28.8-1.fc46 local 5.9 MiB gstreamer1-plugins-bad-free-libs i686 0:1.28.8-1.fc46 local 3.7 MiB gstreamer1-plugins-base i686 0:1.28.8-1.fc46 local 7.9 MiB gtk-update-icon-cache i686 0:3.24.52-6.fc45 local 57.1 KiB gtk3 i686 0:3.24.52-6.fc45 local 23.5 MiB gtk3-devel i686 0:3.24.52-6.fc45 local 34.5 MiB gupnp i686 0:1.6.10-4.fc46 local 307.3 KiB gupnp-igd i686 0:1.6.0-15.fc45 local 65.9 KiB harfbuzz i686 0:14.5.1-1.fc46 local 3.1 MiB harfbuzz-cairo i686 0:14.5.1-1.fc46 local 43.4 KiB harfbuzz-devel i686 0:14.5.1-1.fc46 local 6.5 MiB harfbuzz-gpu i686 0:14.5.1-1.fc46 local 171.6 KiB harfbuzz-icu i686 0:14.5.1-1.fc46 local 10.5 KiB harfbuzz-raster i686 0:14.5.1-1.fc46 local 119.8 KiB harfbuzz-vector i686 0:14.5.1-1.fc46 local 108.5 KiB hicolor-icon-theme noarch 0:0.18-6.fc45 local 72.4 KiB hidapi i686 0:0.15.0-4.fc45 local 103.0 KiB highway i686 0:1.3.0-3.fc45 local 2.2 MiB hunspell i686 0:1.7.5-1.fc46 local 1.4 MiB hunspell-en-US noarch 0:0.20260225-3.fc45 local 506.7 KiB hunspell-filesystem i686 0:1.7.5-1.fc46 local 0.0 B hwdata noarch 0:0.412-1.fc46 local 10.1 MiB hyphen i686 0:2.8.8-30.fc45 local 51.6 KiB imath i686 0:3.1.12-9.fc45 local 382.9 KiB inchi-libs i686 0:1.0.6-15.fc45 local 1.3 MiB iso-codes noarch 0:4.20.1-4.fc45 local 22.3 MiB javascriptcoregtk4.1 i686 0:2.54.1-1.fc46 copr_base 17.3 MiB jbig2dec-libs i686 0:0.20-9.fc45 local 172.1 KiB jbigkit-libs i686 0:2.1-34.fc45 local 111.7 KiB json-glib i686 0:1.10.8-11.fc45 local 603.6 KiB jsoncpp i686 0:1.9.6-3.fc44 local 284.9 KiB kernel-headers i686 0:7.3.0-0.rc7.58.fc46 local 7.1 MiB lame-libs i686 0:4.0-1.fc46 local 933.5 KiB lcms2 i686 0:2.16-8.fc45 local 472.0 KiB libGLEW i686 0:2.2.0-13.fc45 local 683.6 KiB libICE i686 0:1.1.2-5.fc45 local 197.3 KiB libSM i686 0:1.2.5-5.fc45 local 96.1 KiB libX11 i686 0:1.8.13-3.fc46 local 1.4 MiB libX11-common noarch 0:1.8.13-3.fc46 local 1.1 MiB libX11-devel i686 0:1.8.13-3.fc46 local 1.0 MiB libX11-xcb i686 0:1.8.13-3.fc46 local 10.1 KiB libXau i686 0:1.0.12-5.fc45 local 68.1 KiB libXau-devel i686 0:1.0.12-5.fc45 local 7.3 KiB libXcomposite i686 0:0.4.6-8.fc45 local 39.6 KiB libXcomposite-devel i686 0:0.4.6-8.fc45 local 7.6 KiB libXcursor i686 0:1.2.3-5.fc45 local 52.6 KiB libXcursor-devel i686 0:1.2.3-5.fc45 local 20.5 KiB libXdamage i686 0:1.1.6-8.fc45 local 38.8 KiB libXdamage-devel i686 0:1.1.6-8.fc45 local 2.5 KiB libXext i686 0:1.3.6-6.fc45 local 96.8 KiB libXext-devel i686 0:1.3.6-6.fc45 local 97.7 KiB libXfixes i686 0:6.0.1-8.fc45 local 29.4 KiB libXfixes-devel i686 0:6.0.1-8.fc45 local 9.2 KiB libXft i686 0:2.3.8-11.fc45 local 167.4 KiB libXft-devel i686 0:2.3.8-11.fc45 local 29.1 KiB libXi i686 0:1.8.3-2.fc45 local 79.8 KiB libXi-devel i686 0:1.8.3-2.fc45 local 132.2 KiB libXinerama i686 0:1.1.5-11.fc45 local 14.0 KiB libXinerama-devel i686 0:1.1.5-11.fc45 local 6.9 KiB libXrandr i686 0:1.5.4-8.fc45 local 58.9 KiB libXrandr-devel i686 0:1.5.4-8.fc45 local 21.3 KiB libXrender i686 0:0.9.12-5.fc45 local 53.1 KiB libXrender-devel i686 0:0.9.12-5.fc45 local 50.1 KiB libXt i686 0:1.3.1-5.fc45 local 435.4 KiB libXtst i686 0:1.2.5-5.fc45 local 36.5 KiB libXtst-devel i686 0:1.2.5-5.fc45 local 11.2 KiB libXv i686 0:1.0.13-5.fc45 local 25.1 KiB libXxf86vm i686 0:1.1.6-5.fc45 local 24.3 KiB libaom i686 0:3.13.3-3.fc45 local 3.6 MiB libasan i686 0:16.2.1-2.fc46.1 local 1.9 MiB libasyncns i686 0:0.8-35.fc45 local 54.7 KiB libatomic i686 0:16.2.1-2.fc46.1 local 36.4 KiB libavif i686 0:1.3.0-7.fc46 local 273.1 KiB libblkid-devel i686 0:2.42.4-2.fc46 local 45.0 KiB libcloudproviders i686 0:0.4.1-1.fc46 local 123.3 KiB libcloudproviders-devel i686 0:0.4.1-1.fc46 local 1.3 MiB libdatrie i686 0:0.2.14-3.fc45 local 57.0 KiB libdatrie-devel i686 0:0.2.14-3.fc45 local 410.5 KiB libdav1d i686 0:1.5.4-1.fc46 local 1.1 MiB libdecor i686 0:0.2.5-3.fc45 local 150.1 KiB libdeflate i686 0:1.26-1.fc46 local 131.2 KiB libdrm i686 0:2.4.134-2.fc45 local 421.7 KiB libedit i686 0:3.1-60.20260512cvs.fc45 local 243.6 KiB libepoxy i686 0:1.5.10-13.fc45 local 1.1 MiB libepoxy-devel i686 0:1.5.10-13.fc45 local 1.6 MiB libevdev i686 0:1.14.0-1.fc46 local 73.2 KiB libffi-devel i686 0:3.8.0-1.fc46 local 38.7 KiB libgfortran i686 0:16.2.1-2.fc46.1 local 3.3 MiB libglvnd i686 1:1.7.0-10.fc45 local 463.8 KiB libglvnd-core-devel i686 1:1.7.0-10.fc45 local 40.3 KiB libglvnd-devel i686 1:1.7.0-10.fc45 local 2.1 MiB libglvnd-egl i686 1:1.7.0-10.fc45 local 67.9 KiB libglvnd-gles i686 1:1.7.0-10.fc45 local 84.2 KiB libglvnd-glx i686 1:1.7.0-10.fc45 local 607.5 KiB libglvnd-opengl i686 1:1.7.0-10.fc45 local 127.9 KiB libgs i686 0:10.08.0-1.fc46 local 21.4 MiB libgudev i686 0:238-10.fc45 local 82.9 KiB libgusb i686 0:0.4.9-6.fc45 local 157.2 KiB libheif i686 0:1.23.6-3.fc46 local 2.3 MiB libicu i686 0:78.3-8.fc45 local 38.1 MiB libicu-devel i686 0:78.3-8.fc45 local 5.2 MiB libijs i686 0:0.35-27.fc45 local 60.6 KiB libjpeg-turbo i686 0:3.1.4.1-2.fc45 local 885.7 KiB libjxl i686 1:0.11.2-2.fc45 local 2.7 MiB liblerc i686 0:4.2.0-1.fc45 local 692.4 KiB liblqr-1 i686 0:0.4.2-30.fc45 local 100.4 KiB libmanette i686 0:0.2.13-9.fc45 local 366.4 KiB libmount-devel i686 0:2.42.4-2.fc46 local 66.5 KiB libmpc i686 0:1.4.1-2.fc45 local 172.1 KiB libmspack i686 0:0.10.1-0.17.alpha.fc45 local 162.8 KiB libnice i686 0:0.1.23-3.fc45 local 527.7 KiB libogg i686 2:1.3.6-4.fc45 local 48.8 KiB libopenjph i686 0:0.32.0-1.fc46 local 521.6 KiB libpaper i686 1:2.1.1-11.fc45 local 47.9 KiB libpciaccess i686 0:0.16-18.fc45 local 47.7 KiB libpng i686 2:1.6.58-2.fc45 local 269.1 KiB libpng-devel i686 2:1.6.58-2.fc45 local 904.4 KiB libproxy i686 0:0.5.12-3.fc45 local 100.6 KiB libquadmath i686 0:16.2.1-2.fc46.1 local 509.2 KiB libquadmath-devel i686 0:16.2.1-2.fc46.1 local 22.2 KiB libraqm i686 0:0.10.1-5.fc45 local 27.7 KiB librsvg2 i686 0:2.63.2-1.fc46 local 5.3 MiB libseccomp i686 0:2.6.1-3.fc45 local 225.5 KiB libseccomp-devel i686 0:2.6.1-3.fc45 local 114.8 KiB libsecret i686 0:0.21.8.2-3.fc46 local 496.1 KiB libselinux-devel i686 0:3.11-5.fc46 copr_base 121.9 KiB libsepol-devel i686 0:3.11-2.fc45 local 120.7 KiB libsndfile i686 0:1.2.2-12.fc45 local 621.0 KiB libsoup3 i686 0:3.8.0-1.fc46 local 1.3 MiB libstdc++-devel i686 0:16.2.1-2.fc46.1 local 31.6 MiB libstemmer i686 0:3.1.1-2.fc45 local 572.6 KiB libtextstyle i686 0:1.0-4.fc46 local 401.4 KiB libthai i686 0:0.1.30-3.fc45 local 800.2 KiB libthai-devel i686 0:0.1.30-3.fc45 local 510.5 KiB libtheora i686 1:1.1.1-42.fc45 local 498.9 KiB libtiff i686 0:4.7.2-3.fc46 local 679.3 KiB libtinysparql i686 0:3.12.0-1.fc46 local 1.0 MiB libubsan i686 0:16.2.1-2.fc46.1 local 567.1 KiB libultrahdr i686 0:1.4.0^20251202git8cbc983-2.fc45 local 399.9 KiB libuv i686 1:1.52.1-2.fc45 local 596.6 KiB libva i686 0:2.24.1-2.fc45 local 370.0 KiB libvisual i686 1:0.4.2-4.fc44 local 479.6 KiB libvorbis i686 1:1.3.7-21.fc45 local 762.9 KiB libwayland-client i686 0:1.26.0-3.fc46 local 60.9 KiB libwayland-cursor i686 0:1.26.0-3.fc46 local 36.2 KiB libwayland-egl i686 0:1.26.0-3.fc46 local 11.6 KiB libwayland-server i686 0:1.26.0-3.fc46 local 81.4 KiB libwebp i686 0:1.6.0-4.fc45 local 1.0 MiB libwmf-lite i686 0:0.2.16-2.fc46 local 175.3 KiB libxcb i686 0:1.17.0-8.fc45 local 1.0 MiB libxcb-devel i686 0:1.17.0-8.fc45 local 2.6 MiB libxcrypt-devel i686 0:4.5.2-4.fc45 local 31.0 KiB libxkbcommon i686 0:1.13.1-4.fc46 local 434.8 KiB libxkbcommon-devel i686 0:1.13.1-4.fc46 local 393.4 KiB libxshmfence i686 0:1.3.2-9.fc45 local 11.6 KiB libxslt i686 0:1.1.43-10.fc46 local 481.6 KiB libyaml i686 0:0.2.5-19.fc45 local 129.9 KiB libyuv i686 0:0-0.63.20260213git6067afd.fc45 local 695.2 KiB libzip i686 0:1.12.1-1.fc46 local 171.0 KiB llvm-filesystem i686 0:23.1.3-1.fc46 local 0.0 B llvm-libs i686 0:23.1.3-1.fc46 local 149.9 MiB lm_sensors-libs i686 0:3.6.0-25.fc45 local 84.9 KiB lzo i686 0:2.10-17.fc45 local 178.2 KiB lzo-devel i686 0:2.10-17.fc45 local 212.2 KiB lzo-minilzo i686 0:2.10-17.fc45 local 35.9 KiB mesa-dri-drivers i686 0:26.2.5-1.fc46 local 56.7 MiB mesa-filesystem i686 0:26.2.5-1.fc46 local 3.6 KiB mesa-libEGL i686 0:26.2.5-1.fc46 local 353.4 KiB mesa-libGL i686 0:26.2.5-1.fc46 local 349.6 KiB mesa-libGLU i686 0:9.0.3-9.fc45 local 377.2 KiB mesa-libGLU-devel i686 0:9.0.3-9.fc45 local 17.0 KiB mesa-libgbm i686 0:26.2.5-1.fc46 local 18.8 KiB mpdecimal i686 0:4.0.1-4.fc45 local 216.3 KiB mpg123-libs i686 0:1.33.6-3.fc45 local 859.7 KiB ncurses i686 0:6.6-3.fc45 local 605.9 KiB ninja-build i686 0:1.13.2-6.fc45 local 516.9 KiB openblas i686 0:0.3.34-1.fc45 local 138.1 KiB openblas-openmp i686 0:0.3.34-1.fc45 local 26.1 MiB openexr-libs i686 0:3.4.13-2.fc45 local 3.3 MiB openjpeg i686 0:2.5.4-4.fc45 local 483.7 KiB opus i686 0:1.6-3.fc45 local 487.1 KiB orc i686 0:0.4.41-4.fc45 local 865.6 KiB pango i686 0:1.58.2-1.fc45 local 1.0 MiB pango-devel i686 0:1.58.2-1.fc45 local 1.5 MiB pcre2-devel i686 0:10.47-1.fc45.2 local 2.1 MiB pcre2-utf16 i686 0:10.47-1.fc45.2 local 646.4 KiB pcre2-utf32 i686 0:10.47-1.fc45.2 local 618.3 KiB perl-AutoLoader noarch 0:5.74-527.fc45 local 20.6 KiB perl-AutoSplit noarch 0:5.74-527.fc45 local 23.1 KiB perl-B i686 0:1.92-527.fc45 local 516.8 KiB perl-Benchmark noarch 0:1.27-527.fc45 local 36.4 KiB perl-Carp noarch 0:1.54-527.fc45 local 46.6 KiB perl-Class-Struct noarch 0:0.68-527.fc45 local 25.4 KiB perl-Data-Dumper i686 0:2.192-528.fc45 local 110.8 KiB perl-Devel-PPPort i686 0:3.73-527.fc45 local 913.2 KiB perl-Digest noarch 0:1.20-527.fc45 local 35.2 KiB perl-Digest-MD5 i686 0:2.59-527.fc45 local 58.8 KiB perl-DynaLoader i686 0:1.57-527.fc45 local 32.1 KiB perl-Encode i686 4:3.24-527.fc45 local 3.2 MiB perl-Errno i686 0:1.39-527.fc45 local 8.4 KiB perl-Exporter noarch 0:5.79-527.fc45 local 54.2 KiB perl-ExtUtils-Command noarch 2:7.78-527.fc45 local 9.6 KiB perl-ExtUtils-Constant noarch 0:0.25-527.fc45 local 85.9 KiB perl-ExtUtils-Install noarch 0:2.22-527.fc45 local 85.5 KiB perl-ExtUtils-MakeMaker noarch 2:7.78-527.fc45 local 740.0 KiB perl-ExtUtils-Manifest noarch 1:1.75-527.fc45 local 84.8 KiB perl-ExtUtils-ParseXS noarch 1:3.64-1.fc45 local 723.3 KiB perl-Fcntl i686 0:1.20-527.fc45 local 44.0 KiB perl-Fedora-VSP noarch 0:0.001-39.fc45 local 39.7 KiB perl-File-Basename noarch 0:2.86-527.fc45 local 14.0 KiB perl-File-Compare noarch 0:1.100.800-527.fc45 local 5.6 KiB perl-File-Copy noarch 0:2.43-527.fc45 local 19.6 KiB perl-File-Find noarch 0:1.44-527.fc45 local 42.0 KiB perl-File-Path noarch 0:2.18-527.fc45 local 63.4 KiB perl-File-Temp noarch 1:0.231.200-527.fc45 local 163.7 KiB perl-File-stat noarch 0:1.15-527.fc45 local 13.7 KiB perl-FileHandle noarch 0:2.05-527.fc45 local 9.4 KiB perl-Getopt-Long noarch 1:2.58-527.fc45 local 144.5 KiB perl-Getopt-Std noarch 0:1.15-527.fc45 local 12.5 KiB perl-HTTP-Tiny noarch 0:0.096-528.fc45 local 162.4 KiB perl-Hash-Util i686 0:0.32-527.fc45 local 54.2 KiB perl-Hash-Util-FieldHash i686 0:1.27-527.fc45 local 57.7 KiB perl-IO i686 0:1.56-527.fc45 local 146.6 KiB perl-IO-Socket-IP noarch 0:0.44-527.fc45 local 100.5 KiB perl-IO-Socket-SSL noarch 0:2.099-2.fc45 local 726.9 KiB perl-IPC-Open3 noarch 0:1.24-527.fc45 local 27.7 KiB perl-MIME-Base32 noarch 0:1.303-26.fc45 local 30.7 KiB perl-MIME-Base64 i686 0:3.16-527.fc45 local 41.2 KiB perl-Net-SSLeay i686 0:1.96-5.fc45 local 1.4 MiB perl-POSIX i686 0:2.26-527.fc45 local 228.6 KiB perl-PathTools i686 0:3.95-527.fc45 local 175.2 KiB perl-Pod-Escapes noarch 1:1.07-527.fc45 local 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-527.fc45 local 163.8 KiB perl-Pod-Simple noarch 1:3.48-527.fc45 local 565.2 KiB perl-Pod-Usage noarch 4:2.05-527.fc45 local 86.3 KiB perl-Scalar-List-Utils i686 5:1.70-527.fc45 local 144.2 KiB perl-SelectSaver noarch 0:1.03-527.fc45 local 2.1 KiB perl-Socket i686 4:2.043-1.fc46 local 117.1 KiB perl-Storable i686 1:3.41-527.fc45 local 230.2 KiB perl-Symbol noarch 0:1.09-527.fc45 local 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-527.fc45 local 97.5 KiB perl-Term-Cap noarch 0:1.18-527.fc45 local 29.3 KiB perl-Test-Harness noarch 1:3.52-528.fc45 local 560.9 KiB perl-Text-ParseWords noarch 0:3.31-527.fc45 local 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-527.fc45 local 22.6 KiB perl-Time-HiRes i686 4:1.9780-527.fc45 local 114.9 KiB perl-Time-Local noarch 2:1.350-527.fc45 local 69.0 KiB perl-URI noarch 0:5.37-1.fc46 local 275.5 KiB perl-Unicode-Normalize i686 0:1.32-527.fc45 local 326.4 KiB perl-base noarch 0:2.27-527.fc45 local 12.6 KiB perl-constant noarch 0:1.33-528.fc45 local 26.3 KiB perl-fields noarch 0:2.27-527.fc45 local 11.9 KiB perl-if noarch 0:0.61.000-527.fc45 local 5.8 KiB perl-interpreter i686 4:5.44.0-527.fc45 local 119.0 KiB perl-lib i686 0:0.65-527.fc45 local 8.5 KiB perl-libnet noarch 0:3.15-528.fc45 local 288.4 KiB perl-libs i686 4:5.44.0-527.fc45 local 12.3 MiB perl-locale noarch 0:1.13-527.fc45 local 6.1 KiB perl-macros noarch 4:5.44.0-527.fc45 local 5.5 KiB perl-mro i686 0:1.30-527.fc45 local 36.7 KiB perl-overload noarch 0:1.40-527.fc45 local 71.6 KiB perl-overloading noarch 0:0.03-527.fc45 local 4.8 KiB perl-parent noarch 1:0.244-527.fc45 local 10.3 KiB perl-podlators noarch 1:6.1.1-1.fc46 local 327.2 KiB perl-vars noarch 0:1.05-527.fc45 local 3.9 KiB perl-version i686 9:0.99.34-527.fc45 local 128.0 KiB pixman i686 0:0.46.2-4.fc45 local 761.7 KiB pixman-devel i686 0:0.46.2-4.fc45 local 56.1 KiB pulseaudio-libs i686 0:17.0-11.fc46 local 3.5 MiB pyproject-rpm-macros noarch 0:1.24.0-1.fc46 local 169.0 KiB python-pip-wheel noarch 0:26.2.1-1.fc46 local 1.3 MiB python-rpm-macros noarch 0:3.15-2.fc45 local 28.0 KiB python3 i686 0:3.15.0-1.fc46 local 27.9 KiB python3-libs i686 0:3.15.0-1.fc46 local 46.6 MiB python3-numpy i686 1:2.5.4-1.fc46 local 41.0 MiB python3-numpy-f2py i686 1:2.5.4-1.fc46 local 2.1 MiB python3-packaging noarch 0:26.3-1.fc46 local 1.3 MiB python3-pyparsing noarch 0:3.1.2-19.fc46 local 1.0 MiB python3-rpm-generators noarch 0:14-35.fc46 local 81.9 KiB python3-rpm-macros noarch 0:3.15-2.fc45 local 6.5 KiB rav1e-libs i686 0:0.8.1-5.fc46 local 2.1 MiB rhash i686 0:1.4.5-5.fc45 local 402.4 KiB ruby i686 0:4.1.0~20261012gitad29ad7ad8-40.fc46.1 copr_jackorp_ruby_4_1_main 97.2 KiB ruby-default-gems noarch 0:4.1.0~20261012gitad29ad7ad8-40.fc46.1 copr_jackorp_ruby_4_1_main 54.8 KiB ruby-libs i686 0:4.1.0~20261012gitad29ad7ad8-40.fc46.1 copr_jackorp_ruby_4_1_main 14.6 MiB rubygem-psych i686 0:5.5.0-40.fc46.1 copr_jackorp_ruby_4_1_main 149.0 KiB rubygems noarch 0:4.1.0.beta2-40.fc46.1 copr_jackorp_ruby_4_1_main 1.5 MiB rubypick noarch 0:1.1.1-25.fc46 copr_base 4.4 KiB sdl2-compat i686 0:2.32.74-1.fc46 local 441.1 KiB shared-mime-info i686 0:2.5.1-3.fc46 local 6.6 MiB spirv-tools-libs i686 0:2026.3-1.fc46 local 6.8 MiB svt-av1-libs i686 0:3.1.2-3.fc45 local 2.7 MiB sysprof-capture-devel i686 0:51.0-1.fc46 local 564.4 KiB systemd-devel i686 0:262-3.fc46 local 260.5 KiB systemd-rpm-macros noarch 0:262-3.fc46 local 8.5 KiB systemtap-sdt-devel i686 0:5.6~pre17846435g2da140e3-4.fc46 local 189.2 KiB systemtap-sdt-dtrace i686 0:5.6~pre17846435g2da140e3-4.fc46 local 185.8 KiB tzdata noarch 0:2026e-1.fc46 local 1.3 MiB urw-base35-bookman-fonts noarch 0:20200910-29.fc45 local 1.4 MiB urw-base35-c059-fonts noarch 0:20200910-29.fc45 local 1.4 MiB urw-base35-d050000l-fonts noarch 0:20200910-29.fc45 local 84.3 KiB urw-base35-fonts noarch 0:20200910-29.fc45 local 5.3 KiB urw-base35-fonts-common noarch 0:20200910-29.fc45 local 37.4 KiB urw-base35-gothic-fonts noarch 0:20200910-29.fc45 local 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 0:20200910-29.fc45 local 1.0 MiB urw-base35-nimbus-roman-fonts noarch 0:20200910-29.fc45 local 1.4 MiB urw-base35-nimbus-sans-fonts noarch 0:20200910-29.fc45 local 2.4 MiB urw-base35-p052-fonts noarch 0:20200910-29.fc45 local 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 0:20200910-29.fc45 local 64.9 KiB urw-base35-z003-fonts noarch 0:20200910-29.fc45 local 390.8 KiB vim-filesystem noarch 2:9.2.1129-1.fc46 local 40.0 B vulkan-loader i686 0:1.4.357.0-1.fc46 local 650.3 KiB wayland-devel i686 0:1.26.0-3.fc46 local 723.7 KiB webkit2gtk4.1 i686 0:2.54.1-1.fc46 copr_base 99.1 MiB wxBase i686 0:3.2.12-1.fc46 local 2.9 MiB wxBase-devel i686 0:3.2.12-1.fc46 local 6.7 MiB wxGTK i686 0:3.2.12-1.fc46 local 15.4 MiB wxGTK-gl i686 0:3.2.12-1.fc46 local 85.7 KiB wxGTK-i18n noarch 0:3.2.12-1.fc46 local 5.7 MiB wxGTK-media i686 0:3.2.12-1.fc46 local 77.6 KiB wxGTK-webview i686 0:3.2.12-1.fc46 local 178.3 KiB xdg-dbus-proxy i686 0:0.1.9-1.fc46 local 90.7 KiB xkeyboard-config noarch 0:2.48-4.fc45 local 6.4 MiB xml-common noarch 0:0.6.3-70.fc46 local 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-3.fc45 local 1.8 MiB xprop i686 0:1.2.8-6.fc45 local 52.6 KiB xz-devel i686 1:5.8.4-1.fc46 local 258.8 KiB zlib-ng-compat-devel i686 0:2.3.3-6.fc45 local 107.0 KiB Transaction Summary: Installing: 463 packages Total size of inbound packages is 392 MiB. Need to download 84 MiB. After this operation, 2 GiB extra will be used (install 2 GiB, remove 0 B). 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eigen3-devel-0:5.0 100% | 247.2 MiB/s | 9.6 MiB | 00m00s [455/465] Installing rapidjson-devel-0: 100% | 258.4 MiB/s | 793.7 KiB | 00m00s [456/465] Installing systemd-rpm-macros 100% | 0.0 B/s | 8.9 KiB | 00m00s [457/465] Installing cmake-0:4.3.0-5.fc 100% | 250.6 MiB/s | 42.1 MiB | 00m00s [458/465] Installing cmake-data-0:4.3.0 100% | 76.3 MiB/s | 10.1 MiB | 00m00s [459/465] Installing ImageMagick-1:7.1. 100% | 3.4 MiB/s | 87.8 KiB | 00m00s [460/465] Installing gcc-c++-0:16.2.1-2 100% | 258.2 MiB/s | 47.0 MiB | 00m00s [461/465] Installing annobin-plugin-gcc 100% | 37.5 MiB/s | 729.3 KiB | 00m00s [462/465] Installing gcc-plugin-annobin 100% | 2.9 MiB/s | 61.3 KiB | 00m00s [463/465] Installing desktop-file-utils 100% | 9.6 MiB/s | 205.8 KiB | 00m00s [464/465] Installing swig-0:4.5.1-2.fc4 100% | 115.3 MiB/s | 6.6 MiB | 00m00s [465/465] Installing dos2unix-0:7.5.7-1 100% | 894.1 KiB/s | 856.6 KiB | 00m01s Warning: skipped OpenPGP checks for 463 packages from repositories: copr_base, copr_jackorp_ruby_4_1_main, local Complete! Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1788998400 Wrote: /builddir/build/SRPMS/openbabel-3.2.0-7.fc46.src.rpm Updating and loading repositories: local 100% | 9.1 KiB/s | 3.5 KiB | 00m00s Additional repo copr_jackorp_ruby_4_1_ 100% | 5.0 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 5.2 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "ImageMagick-1:7.1.2.34-1.fc46.i686" is already installed.Nothing to do. Package "boost-devel-1.90.0-13.fc45.i686" is already installed. Package "cmake-4.3.0-5.fc45.i686" is already installed. Package "desktop-file-utils-0.28-8.fc45.i686" is already installed. Package "dos2unix-7.5.7-1.fc46.i686" is already installed. Package "eigen3-devel-5.0.1-4.fc45.noarch" is already installed. Package "gcc-c++-16.2.1-2.fc46.1.i686" is already installed. Package "inchi-devel-1.0.6-15.fc45.i686" is already installed. Package "libxml2-devel-2.15.4-1.fc46.i686" is already installed. Package "make-1:4.4.1-13.fc45.i686" is already installed. Package "perl-devel-4:5.44.0-527.fc45.i686" is already installed. Package "perl-generators-1.16-10.fc45.noarch" is already installed. Package "python3-devel-3.15.0-1.fc46.i686" is already installed. Package "python3-setuptools-84.0.0-1.fc46.noarch" is already installed. Package "rapidjson-devel-1.1.0^20241222git24b5e7a-5.fc45.i686" is already installed. Package "ruby-devel-4.1.0~20261012gitad29ad7ad8-40.fc46.1.i686" is already installed. Package "swig-4.5.1-2.fc46.i686" is already installed. Package "wxGTK-devel-3.2.12-1.fc46.i686" is already installed. Finish: build setup for openbabel-3.2.0-7.fc46.src.rpm Start: rpmbuild openbabel-3.2.0-7.fc46.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1788998400 Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.S1tiE7 Creating(rpmbuild.env): /builddir/build/BUILD/openbabel-3.2.0-build/rpmbuild.env RPM_SOURCE_DIR="/builddir/build/SOURCES" RPM_BUILD_DIR="/builddir/build/BUILD/openbabel-3.2.0-build" RPM_OPT_FLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu" RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes " RPM_ARCH="i386" RPM_OS="linux" RPM_BUILD_NCPUS="2" RPM_SPECPARTS_DIR="/builddir/build/BUILD/openbabel-3.2.0-build/SPECPARTS" export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS RPM_DOC_DIR="/usr/share/doc" export RPM_DOC_DIR RPM_PACKAGE_NAME="openbabel" RPM_PACKAGE_VERSION="3.2.0" RPM_PACKAGE_RELEASE="7.fc46" export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE LANG=C.UTF-8 export LANG unset CDPATH DISPLAY ||: unset DEBUGINFOD_URLS ||: unset RPM_CONFIG_DIR ||: RPM_BUILD_ROOT="/builddir/build/BUILD/openbabel-3.2.0-build/BUILDROOT" export RPM_BUILD_ROOT PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib/pkgconfig:/usr/share/pkgconfig" export PKG_CONFIG_PATH CONFIG_SITE=${CONFIG_SITE:-NONE} export CONFIG_SITE Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Eds6d0 + umask 022 + cd /builddir/build/BUILD/openbabel-3.2.0-build + cd /builddir/build/BUILD/openbabel-3.2.0-build + rm -rf openbabel-openbabel-3-2-0 + /usr/bin/rpmuncompress -x /builddir/build/SOURCES/openbabel-openbabel-3-2-0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd openbabel-openbabel-3-2-0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (openbabel-perl.patch):' Patch #0 (openbabel-perl.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .perl_path --fuzz=0 patching file scripts/CMakeLists.txt Patch #1 (openbabel-plugindir.patch): + echo 'Patch #1 (openbabel-plugindir.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .plugindir --fuzz=0 patching file CMakeLists.txt Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch): + echo 'Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file openbabel-3.pc.cmake + rm -rf src/formats/libinchi + dos2unix -k data/chemdrawcdx.h include/openbabel/tautomer.h include/openbabel/math/align.h src/math/align.cpp test/testsmartssym.py dos2unix: converting file data/chemdrawcdx.h to Unix format... dos2unix: converting file include/openbabel/tautomer.h to Unix format... dos2unix: converting file include/openbabel/math/align.h to Unix format... dos2unix: converting file src/math/align.cpp to Unix format... dos2unix: converting file test/testsmartssym.py to Unix format... + magick src/GUI/babel.xpm -transparent white babel.png ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/doc ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 + pushd doc + for man in *.1 ++ basename obabel.1 .1 + html=obabel.html + '[' -f obabel.html ']' + rm obabel.html + for man in *.1 ++ basename obchiral.1 .1 + html=obchiral.html + '[' -f obchiral.html ']' + rm obchiral.html + for man in *.1 ++ basename obconformer.1 .1 + html=obconformer.html + '[' -f obconformer.html ']' + rm obconformer.html + for man in *.1 ++ basename obdistgen.1 .1 + html=obdistgen.html + '[' -f obdistgen.html ']' + for man in *.1 ++ basename obenergy.1 .1 + html=obenergy.html + '[' -f obenergy.html ']' + rm obenergy.html + for man in *.1 ++ basename obfit.1 .1 + html=obfit.html + '[' -f obfit.html ']' + rm obfit.html + for man in *.1 ++ basename obgen.1 .1 + html=obgen.html + '[' -f obgen.html ']' + rm obgen.html + for man in *.1 ++ basename obgrep.1 .1 + html=obgrep.html + '[' -f obgrep.html ']' + rm obgrep.html + for man in *.1 ++ basename obgui.1 .1 + html=obgui.html + '[' -f obgui.html ']' + rm obgui.html + for man in *.1 ++ basename obminimize.1 .1 + html=obminimize.html + '[' -f obminimize.html ']' + rm obminimize.html + for man in *.1 ++ basename obprobe.1 .1 + html=obprobe.html + '[' -f obprobe.html ']' + rm obprobe.html + for man in *.1 ++ basename obprop.1 .1 + html=obprop.html + '[' -f obprop.html ']' + rm obprop.html + for man in *.1 ++ basename obrms.1 .1 + html=obrms.html + '[' -f obrms.html ']' + for man in *.1 ++ basename obrotamer.1 .1 + html=obrotamer.html + '[' -f obrotamer.html ']' + rm obrotamer.html + for man in *.1 ++ basename obrotate.1 .1 + html=obrotate.html + '[' -f obrotate.html ']' + rm obrotate.html + for man in *.1 ++ basename obspectrophore.1 .1 + html=obspectrophore.html + '[' -f obspectrophore.html ']' + rm obspectrophore.html + for man in *.1 ++ basename obsym.1 .1 + html=obsym.html + '[' -f obsym.html ']' + for man in *.1 ++ basename obtautomer.1 .1 + html=obtautomer.html + '[' -f obtautomer.html ']' + for man in *.1 ++ basename obthermo.1 .1 + html=obthermo.html + '[' -f obthermo.html ']' + for man in *.1 ++ basename roundtrip.1 .1 + html=roundtrip.html + '[' -f roundtrip.html ']' ~/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.pNxR8c + umask 022 + cd /builddir/build/BUILD/openbabel-3.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd openbabel-openbabel-3-2-0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCMAKE_SKIP_RPATH:BOOL=ON -DBUILD_GUI:BOOL=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS:BOOL=ON -DRUBY_BINDINGS:BOOL=ON -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DOB_PLUGIN_INSTALL_DIR:PATH=lib/openbabel3 -DOPENBABEL_USE_SYSTEM_INCHI=true -DINCHI_INCLUDE_DIR:PATH=/usr/include/inchi -DINCHI_LIBRARY:FILEPATH=/usr/lib/libinchi.so -DENABLE_VERSIONED_FORMATS=false -DRUN_SWIG:BOOL=ON -DENABLE_TESTS:BOOL=ON -DOPTIMIZE_NATIVE=OFF -DGLIBC_24_COMPATIBLE:BOOL=OFF -DEigen3_DIR:PATH=/usr/share/cmake/eigen3 -DRUBY_INSTDIR:PATH=/usr/lib/ruby/vendor_ruby -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found LibXml2: /usr/lib/libxml2.so (found version "2.15.4") -- Found ZLIB: /usr/lib/libz.so (found version "1.3.1") -- Found wxWidgets: -pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.12") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for xdrstdio_create -- Looking for xdrstdio_create - not found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-redhat-linux/16/lto-wrapper Target: i686-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,objc,obj-c++,ada,go,d,m2,algol68,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugzilla.redhat.com/ --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --enable-plugin --enable-initfini-array --enable-libstdcxx-backtrace --with-libstdcxx-zoneinfo=/usr/share/zoneinfo --with-isl=/builddir/build/BUILD/gcc-16.2.1-build/gcc-16.2.1-20260819/obj-i686-redhat-linux/isl-install --enable-gnu-indirect-function --enable-multilib --with-linker-hash-style=gnu --enable-cet --with-tune=generic --with-tls=gnu2 --with-arch=i686 --build=i686-redhat-linux --with-build-config=bootstrap-lto --enable-link-serialization=1 --disable-libssp Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 16.2.1 20260819 (Red Hat 16.2.1-2) (GCC) -- Found Boost: /usr/lib/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: program_options iostreams -- Found Boost: /usr/lib/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: filesystem iostreams unit_test_framework -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. -- Found PkgConfig: /usr/bin/pkg-config (found version "2.5.1") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.6 -- Found Cairo: /usr/lib/libcairo.so -- Cairo found. PNG output will be supported. -- Found Perl: /usr/bin/perl (found version "5.44.0") -- Found Boost: /usr/lib/cmake/Boost-1.90.0/BoostConfig.cmake (found suitable version "1.90.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/lib/cmake/Boost-1.90.0/BoostConfig.cmake (found version "1.90.0") found components: program_options iostreams -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built -- Found Python: /usr/bin/python3.15 (found version "3.15.0") found components: Interpreter -- Found SWIG: /usr/bin/swig (found version "4.5.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.5.1", minimum required is "2.0") -- Found Python: /usr/bin/python3.15 (found version "3.15.0") found components: Interpreter Development Development.Module Development.Embed -- Python bindings will be compiled -- Found PerlLibs: /usr/lib/libperl.so (found version "5.44.0") -- Perl bindings will be compiled -- Found Ruby: /usr/bin/ruby (found version "4.1.0") found components: Interpreter Development -- Ruby bindings will be compiled -- Configuring done (6.9s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR PYTHON_EXECUTABLE SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 2 [0/2] /usr/bin/cmake -P /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/CMakeFiles/VerifyGlobs.cmake [1/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/atomtyp.txt AtomTypeData AtomTypeData > atomtyp.h [2/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bondtyp.txt BondTypeData BondTypeData > bondtyp.h [3/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/phmodel.txt PhModelData PhModelData > phmodeldata.h [4/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/resdata.txt ResidueData ResidueData > resdata.h [5/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/ringtyp.txt RingTypeData RingTypeData > ringtyp.h [6/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/space-groups.txt SpaceGroupsData SpaceGroupsData > spacegroups.h [7/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/torlib.txt TorsionDefaults TorsionDefaults > torlib.h [8/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/types.txt TypesData TypesData > types.h [9/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data && /usr/bin/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/bin2hex.pl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data/atomization-energies.txt AtomicHeatOfFormationData AtomicHeatOfFormationData > atomizationenergies.h [10/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF src/CMakeFiles/openbabel.dir/atom.cpp.o.d -o src/CMakeFiles/openbabel.dir/atom.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/atom.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [11/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF src/CMakeFiles/openbabel.dir/alias.cpp.o.d -o src/CMakeFiles/openbabel.dir/alias.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/alias.h:20, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/alias.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [12/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF src/CMakeFiles/openbabel.dir/base.cpp.o.d -o src/CMakeFiles/openbabel.dir/base.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/base.cpp [13/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bitvec.cpp.o -MF src/CMakeFiles/openbabel.dir/bitvec.cpp.o.d -o src/CMakeFiles/openbabel.dir/bitvec.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bitvec.cpp [14/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bond.cpp.o -MF src/CMakeFiles/openbabel.dir/bond.cpp.o.d -o src/CMakeFiles/openbabel.dir/bond.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp: In constructor ‘OpenBabel::OBBond::OBBond()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:63:18: warning: ‘OpenBabel::OBBond::Visit’ is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 63 | OBBond::OBBond() /*: d(new OBBondPrivate)*/ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:98:12: note: declared here 98 | bool Visit; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bond.cpp:63:18: warning: ‘OpenBabel::OBBond::Visit’ is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 63 | OBBond::OBBond() /*: d(new OBBondPrivate)*/ | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:98:12: note: declared here 98 | bool Visit; | ^~~~~ [15/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF src/CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bondtyper.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/bondtyper.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [16/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/macrocycle.cpp.o -MF src/CMakeFiles/openbabel.dir/macrocycle.cpp.o.d -o src/CMakeFiles/openbabel.dir/macrocycle.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/macrocycle.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/macrocycle.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [17/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF src/CMakeFiles/openbabel.dir/builder.cpp.o.d -o src/CMakeFiles/openbabel.dir/builder.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/builder.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [18/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/canon.cpp.o -MF src/CMakeFiles/openbabel.dir/canon.cpp.o.d -o src/CMakeFiles/openbabel.dir/canon.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/canon.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/canon.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [19/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chains.cpp.o -MF src/CMakeFiles/openbabel.dir/chains.cpp.o.d -o src/CMakeFiles/openbabel.dir/chains.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chains.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chains.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [20/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -MF src/CMakeFiles/openbabel.dir/chargemodel.cpp.o.d -o src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chargemodel.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/chargemodel.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [21/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -MF src/CMakeFiles/openbabel.dir/data_utilities.cpp.o.d -o src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data_utilities.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data_utilities.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [22/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF src/CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o src/CMakeFiles/openbabel.dir/descriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptor.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [23/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF src/CMakeFiles/openbabel.dir/data.cpp.o.d -o src/CMakeFiles/openbabel.dir/data.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/data.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [24/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/elements.cpp.o -MF src/CMakeFiles/openbabel.dir/elements.cpp.o.d -o src/CMakeFiles/openbabel.dir/elements.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/elements.cpp [25/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF src/CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprint.cpp [26/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF src/CMakeFiles/openbabel.dir/format.cpp.o.d -o src/CMakeFiles/openbabel.dir/format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/format.cpp [27/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF src/CMakeFiles/openbabel.dir/generic.cpp.o.d -o src/CMakeFiles/openbabel.dir/generic.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/generic.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [28/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF src/CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o src/CMakeFiles/openbabel.dir/graphsym.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/graphsym.cpp:30: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [29/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF src/CMakeFiles/openbabel.dir/grid.cpp.o.d -o src/CMakeFiles/openbabel.dir/grid.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp: In member function ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:82:5: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 82 | _ival=nullptr; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/grid.cpp:82:5: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 82 | _ival=nullptr; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ [30/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF src/CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o src/CMakeFiles/openbabel.dir/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:435:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 435 | if (_ignoreAtom == a) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:437:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 437 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:447:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 447 | if (_ignoreAtom == b) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In static member function ‘static bool OpenBabel::OBForceField::IgnoreCalculation(int, int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:457:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 457 | if (_ignoreAtom == d) | ~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintEnergy()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:526:53: warning: ‘static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 526 | rab = OBForceField::VectorLengthDerivative(da, db); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1569:19: note: declared here 1569 | static double VectorLengthDerivative(vector3 &a, vector3 &b); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:543:54: warning: ‘static double OpenBabel::OBForceField::VectorAngleDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 543 | theta = OBForceField::VectorAngleDerivative(da, db, dc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1585:19: note: declared here 1585 | static double VectorAngleDerivative(vector3 &a, vector3 &b, vector3 &c); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:562:56: warning: ‘static double OpenBabel::OBForceField::VectorTorsionDerivative(OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 562 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1618:19: note: declared here 1618 | static double VectorTorsionDerivative(vector3 &a, vector3 &b, vector3 &c, vector3 &d); | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintType(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:709:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 709 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘double OpenBabel::OBFFConstraints::GetConstraintValue(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:717:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 717 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:725:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 725 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:733:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 733 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:741:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 741 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:749:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 749 | if (index >= _constraints.size()) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::SystematicRotorSearchInitialize(unsigned int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1224:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1224 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:32: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘int OpenBabel::OBForceField::FastRotorSearch(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1345:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1345 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1393:34: warning: array subscript has type ‘char’ [-Wchar-subscripts] 1393 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1397:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1397 | for (int i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1410 | for (int i=0; i >&, std::vector, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1619:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1619 | if (j == rotorKey[i]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1638:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1638 | if (j == rotorKey[i]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1678:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1678 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:668:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:664:20: note: ‘constraint’ declared here 664 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:668:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomZConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:664:20: note: ‘constraint’ declared here 664 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:679:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:673:20: note: ‘constraint’ declared here 673 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:679:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:673:20: note: ‘constraint’ declared here 673 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:691:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:684:20: note: ‘constraint’ declared here 684 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:691:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:684:20: note: ‘constraint’ declared here 684 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:704:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:696:20: note: ‘constraint’ declared here 696 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:704:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:696:20: note: ‘constraint’ declared here 696 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddIgnore(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:624:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM [(double *)&constraint + 16B]’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddIgnore(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:621:20: note: ‘constraint’ declared here 621 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:635:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:631:20: note: ‘constraint’ declared here 631 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:635:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:631:20: note: ‘constraint’ declared here 631 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:646:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:642:20: note: ‘constraint’ declared here 642 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:646:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomXConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:642:20: note: ‘constraint’ declared here 642 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:657:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rab0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:653:20: note: ‘constraint’ declared here 653 | OBFFConstraint constraint; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFConstraint::OBFFConstraint(OpenBabel::OBFFConstraint const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFConstraint*, OpenBabel::OBFFConstraint const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFConstraint const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:657:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:233:16: warning: ‘MEM[(const struct OBFFConstraint &)&constraint].rbc0’ may be used uninitialized [-Wmaybe-uninitialized] 233 | class OBFPRT OBFFConstraint | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBFFConstraints::AddAtomYConstraint(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:653:20: note: ‘constraint’ declared here 653 | OBFFConstraint constraint; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp: In member function ‘OpenBabel::OBForceField::FastRotorSearch(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1433:29: warning: ‘minj’ may be used uninitialized [-Wmaybe-uninitialized] 1433 | rotorKey[idx + 1] = minj; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1359:21: note: ‘minj’ was declared here 1359 | unsigned int j, minj; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1450:11: warning: ‘minE’ may be used uninitialized [-Wmaybe-uninitialized] 1450 | if (minE < best_minE) { | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefield.cpp:1360:22: note: ‘minE’ was declared here 1360 | double currentE, minE, best_minE; | ^~~~ [31/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF src/CMakeFiles/openbabel.dir/griddata.cpp.o.d -o src/CMakeFiles/openbabel.dir/griddata.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:31, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:55:18: warning: ‘virtual void OpenBabel::OBGrid::Init(OpenBabel::OBMol&)’ was hidden [-Woverloaded-virtual=] 55 | virtual void Init(OBMol &box); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:123:10: note: by ‘void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)’ 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In constructor ‘OpenBabel::OBFloatGrid::OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:115:21: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 115 | OBFloatGrid() : _ival(nullptr), _halfSpace(0.0) {} | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h: In destructor ‘virtual OpenBabel::OBFloatGrid::~OBFloatGrid()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:11: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:118:28: warning: ‘OpenBabel::OBFloatGrid::_ival’ is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:105:26: note: declared here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp: In member function ‘void OpenBabel::OBGridData::GetOriginVector(double*) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:194:24: warning: ‘void OpenBabel::OBFloatGrid::GetMin(double*)’ is deprecated: Use GetMin() instead [-Wdeprecated-declarations] 194 | d->floatGrid.GetMin(o); | ~~~~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:132:10: note: declared here 132 | void GetMin(double *a) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp: In member function ‘void OpenBabel::OBGridData::SetLimits(const double*, const double*, const double*, const double*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/griddata.cpp:235:27: warning: ‘void OpenBabel::OBFloatGrid::SetLimits(const double*, const double*, const double*, const double*)’ is deprecated: Use vector version instead [-Wdeprecated-declarations] 235 | d->floatGrid.SetLimits(origin, x, y, z); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/grid.h:229:10: note: declared here 229 | void SetLimits(const double origin[3], const double x[3], const double y[3], | ^~~~~~~~~ [32/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/kekulize.cpp.o -MF src/CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o src/CMakeFiles/openbabel.dir/kekulize.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp: In function ‘bool OpenBabel::NeedsDoubleBond(OBAtom*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/kekulize.cpp:100:15: warning: unused variable ‘nbr’ [-Wunused-variable] 100 | OBAtom *nbr = bond->GetNbrAtom(atom); | ^~~ [33/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF src/CMakeFiles/openbabel.dir/locale.cpp.o.d -o src/CMakeFiles/openbabel.dir/locale.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/locale.cpp [34/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -MF src/CMakeFiles/openbabel.dir/isomorphism.cpp.o.d -o src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp:3: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp: In member function ‘void OpenBabel::VF2Mapper::MapNext(State&, OpenBabel::OBQueryAtom*, OpenBabel::OBAtom*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp:317:41: warning: comparison of integer expressions of different signedness: ‘time_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 317 | if (time(nullptr) - m_startTime > m_timeout) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp: In member function ‘virtual void OpenBabel::VF2Mapper::MapGeneric(OpenBabel::OBIsomorphismMapper::Functor&, const OpenBabel::OBMol*, const OpenBabel::OBBitVec&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/isomorphism.cpp:501:41: warning: comparison of integer expressions of different signedness: ‘time_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 501 | if (time(nullptr) - m_startTime > m_timeout) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ [35/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/matrix.cpp.o -MF src/CMakeFiles/openbabel.dir/matrix.cpp.o.d -o src/CMakeFiles/openbabel.dir/matrix.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/matrix.cpp [36/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/molchrg.cpp.o -MF src/CMakeFiles/openbabel.dir/molchrg.cpp.o.d -o src/CMakeFiles/openbabel.dir/molchrg.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/molchrg.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/molchrg.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [37/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF src/CMakeFiles/openbabel.dir/mol.cpp.o.d -o src/CMakeFiles/openbabel.dir/mol.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘unsigned int OpenBabel::OBMol::NumHvyAtoms() const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:811:36: warning: unnecessary parentheses in declaration of ‘i’ [-Wparentheses] 811 | vector::const_iterator(i); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:811:36: note: remove parentheses 811 | vector::const_iterator(i); | ^~~ | - - /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘unsigned int OpenBabel::OBMol::GetTotalSpinMultiplicity()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:1229:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1229 | if (chg % 2 != unpaired_electrons %2) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp: In member function ‘bool OpenBabel::OBMol::ConvertZeroBonds()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:3935:31: warning: unused variable ‘b’ [-Wunused-variable] 3935 | FOR_BONDS_OF_ATOM(b, bgn) { bcount += 1; } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:420:45: note: in definition of macro ‘FOR_BONDS_OF_ATOM’ 420 | #define FOR_BONDS_OF_ATOM(b,p) for (auto b : impl::AtomGetBonds(p)) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mol.cpp:3937:31: warning: unused variable ‘b’ [-Wunused-variable] 3937 | FOR_BONDS_OF_ATOM(b, end) { ecount += 1; } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:420:45: note: in definition of macro ‘FOR_BONDS_OF_ATOM’ 420 | #define FOR_BONDS_OF_ATOM(b,p) for (auto b : impl::AtomGetBonds(p)) | ^ [38/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF src/CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o src/CMakeFiles/openbabel.dir/obconversion.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obconversion.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstream.h:333, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obconversion.cpp:54: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h: In instantiation of ‘bool zlib_stream::basic_zip_streambuf::zip_to_stream(char_type*, std::streamsize) [with charT = char; traits = std::char_traits; char_type = char; std::streamsize = int]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:126:9: required from ‘zlib_stream::basic_zip_streambuf::int_type zlib_stream::basic_zip_streambuf::overflow(int_type) [with charT = char; traits = std::char_traits; int_type = int]’ 126 | if (zip_to_stream(this->pbase(), w)) | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:118:1: required from here 118 | basic_zip_streambuf::overflow(int_type c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/zipstreamimpl.h:242:44: warning: variable ‘total_written_byte_size’ set but not used [-Wunused-but-set-variable=] 242 | std::streamsize written_byte_size = 0, total_written_byte_size = 0; | ^~~~~~~~~~~~~~~~~~~~~~~ [39/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:425:5: warning: multi-line comment [-Wcomment] 425 | // / \ | ^ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TSimpleMolecule::threeBondResolve(int, int, double&, double&, OpenBabel::neighbourlist*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:970:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 970 | for (i=0; i&, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:1473:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1473 | for (j=0; j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1480 | } while (k&, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2022:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2022 | for (j=0; j0) atDef=atDef+1; | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2032:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2032 | if (cN>=0) if (maxAtDef==atomCycle[cN].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2047:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2047 | for (j=1; j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2053 | for (j=0;currNumDef < atomClean && j&, std::vector, std::vector&, std::vector >&, std::vector&, std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2120:98: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2120 | if (baseCycle>0) for (i=0; i, std::vector, int, int&, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2251:67: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2251 | for (j=0; j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2253 | for (k=0; k::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2277 | for (j=1; j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2588 | if ((nb + i) > dsATN.size()) nb=dsATN.size()-i; // Check added to avoid segfault below, see issue #1851 | ~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TSimpleMolecule::flipSmall(int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:2998:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2998 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3037 | for (i=0; i, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3116 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3116:75: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3116 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom1] || bond->at[1]==dblbond->bstereo_refs[ref_atom1]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3118:26: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3118 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3118:75: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘__gnu_cxx::__alloc_traits, long unsigned int>::value_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3118 | if (bond->at[0]==dblbond->bstereo_refs[ref_atom2] || bond->at[1]==dblbond->bstereo_refs[ref_atom2]) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘bool OpenBabel::compareAtoms(int, int, std::vector*>)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3140:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3140 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3140:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3140 | if ((a1 < 0) || (a2 < 0) || (a1 >= aeqList.size()) || (a2 >= aeqList.size())) return result; | ~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TSimpleMolecule::makeEquivalentList(std::vector&, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3306:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3306 | for (j=0; jsize(); j++) (*lL)[i]=0; | ~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3314:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3314 | for (i=0; i*>::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3324 | for (int i=0; i&, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3340:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const __gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘const int’} [-Wsign-compare] 3340 | if (l <= maxValues[i]) { /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘int OpenBabel::TSimpleMolecule::correctOverlapped()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3389:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3389 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3442 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3452 | for (i=0; i*, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:3555:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 3555 | for (i=0; isize(); i++) if (i != index) { | ~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4231:19: warning: variable ‘nBondsOld’ set but not used [-Wunused-but-set-variable=] 4231 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:10: warning: variable ‘test’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:15: warning: variable ‘test1’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4232:21: warning: variable ‘test2’ set but not used [-Wunused-but-set-variable=] 4232 | bool test,test1,test2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4234:40: warning: variable ‘xCenter’ set but not used [-Wunused-but-set-variable=] 4234 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4234:48: warning: variable ‘yCenter’ set but not used [-Wunused-but-set-variable=] 4234 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘OpenBabel::TEditedMolecule* OpenBabel::TEditedMolecule::extractFragment(int, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4425:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4425 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4425:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4425 | if (list.size()>1) for (i=0; i<(list.size()-1); i++) for (j=i+1; jlist[j]) { | ~^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4430:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4430 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4433 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4606 | for (j=0; j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4611 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4616 | for (i=0; i*, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4651:31: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 4651 | if (qEnumerator->size() != nAtoms()) qEnumerator->resize(nAtoms()); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4652:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4652 | for (i=0; isize(); i++) (*qEnumerator)[i]=i; | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4681:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4681 | for (j=0; jsize(); j++) { | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TEditedMolecule::fragmentSearch(OpenBabel::TEditedMolecule*, std::vector*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4868:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4868 | if (molecule1->listarSize()>aSTested.size()) aSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4869:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4869 | if (molecule1->listarSize()>bSTested.size()) bSTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4870:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4870 | if (molecule1->listarSize()>queryQHydr.size()) queryQHydr.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4871:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4871 | if (molecule1->listarSize()>queryAQTested.size()) queryAQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4872:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4872 | if (molecule1->listarSize()>queryBQTested.size()) queryBQTested.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4873:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4873 | if (molecule1->listarSize()>queryCurrentAssignment.size()) queryCurrentAssignment.resize(molecule1->listarSize()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4874:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 4874 | if (this->listarSize()>queryAQTested.size()) queryAQTested.resize(this->listarSize()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5047:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 5047 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4855:9: warning: variable ‘cycleNumber’ set but not used [-Wunused-but-set-variable=] 4855 | int cycleNumber; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘bool OpenBabel::TemplateRedraw::internalBondsPresent(OpenBabel::TEditedMolecule*, OpenBabel::TSimpleMolecule*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5210:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5210 | for (i=0; inAtoms(); i++) aList[mQuery->queryAQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5211:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 5211 | for (i=0; inBonds(); i++) bList[mQuery->queryBQTested[i]]=1; | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘void OpenBabel::TemplateRedraw::rotateBondVertically(OpenBabel::TSimpleMolecule*, std::vector, int, double, double, double&, double&, double&, double&, double&, double&, int&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5241:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5241 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5286 | for (i=0; i*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5320:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5320 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5337:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5337 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5367 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5377 | for (i=0; i*, OpenBabel::PartFragmentDefinition&, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5408:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5408 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5421:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5421 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5437:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5437 | for (i=0; isize(); i++) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘int OpenBabel::TemplateRedraw::coordinatesPrepare(OpenBabel::TEditedMolecule&, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5676:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5676 | for (i=kk; ifragmentSearch(&sm,nullptr)) { | ~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:5724:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5724 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5727 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5735 | for (j=0; j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5807 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5837 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5903 | for (j=0; j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5915 | for (frCount=0; frCount::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5931 | for (frCount=0; frCount::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5954 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 5969 | for (frCount=0; frCount::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6009 | for (i=0;i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6016 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6035 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6043 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6044 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6045 | for (i=0; i::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 6367 | if (result == string::npos) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6368:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6368 | if (result >= instring.length()) result=-1; | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘std::string OpenBabel::getAtomMCDL(OBMol*, int, std::vector, std::vector, std::vector, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6555:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6555 | for (j=0; j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6600 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6602:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6602 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) n++; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6608:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6608 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) { | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6618:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6618 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-1; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6621:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6621 | for (j=i+1; j= 0) && (anumStereo[j] >= 0)) if (eqList[anumStereo[i]] == eqList[anumStereo[j]]) anumStereo[j]=-2; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6632:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6632 | if (k == 1) for (i=0; i >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6641 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6641 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6651 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘std::string OpenBabel::getBondMCDL(OBMol*, int, int, std::vector, std::vector, int (*)[4], std::vector, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6852:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6852 | if (anumStereo.size() > 1) for (i=0; i<(anumStereo.size()-1); i++) if (anumStereo[i] >= 0) { | ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6854:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6854 | for (j=i+1; j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6859 | for (j=i+1; j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6873 | for (j=i+1; j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6881 | for (j=i+1; j >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6886 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6886 | if (v.size() > 1) for (i=0; i<(v.size() - 1); i++) for (j=i+1; j >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6896 | for (i=0; i < v.size(); i++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6689:26: warning: variable ‘n4’ set but not used [-Wunused-but-set-variable=] 6689 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘void OpenBabel::implementAtomStereo(std::vector&, std::vector&, std::vector&, std::vector, std::vector, int, int, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:6969:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 6969 | if (n1 < (astereo.length()-1)) astereo=astereo.substr(n1+1); else astereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘void OpenBabel::implementBondStereo(std::vector, std::vector, std::vector&, std::vector&, int, int, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7033:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7033 | if (n1 < (bstereo.length()-1)) bstereo=bstereo.substr(n1+1); else bstereo=""; | ~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In function ‘int OpenBabel::groupRedraw(OBMol*, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7168:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7168 | for (i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7176 | for (int i=0; i&, int&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7218 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7221:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7221 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7242:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7242 | if (n='0') && (value.at(n)<='9')) { | ~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:7245:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 7245 | while ((n2<(value.length()-1)) && (value.at(n2)>='0') && (value.at(n2)<='9')) n2++; | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp: In member function ‘OpenBabel::TEditedMolecule::addAsTemplate(OpenBabel::TEditedMolecule&, int, int, int, int, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4348:16: warning: ‘r1’ may be used uninitialized [-Wmaybe-uninitialized] 4348 | xNew=r1*scale*xu1+this->getAtom(thisAN)->rx; | ~~^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/mcdlutil.cpp:4235:12: note: ‘r1’ was declared here 4235 | double r1; | ^~ [40/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -MF src/CMakeFiles/openbabel.dir/obfunctions.cpp.o.d -o src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obfunctions.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obfunctions.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obfunctions.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [41/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/oberror.cpp.o -MF src/CMakeFiles/openbabel.dir/oberror.cpp.o.d -o src/CMakeFiles/openbabel.dir/oberror.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/oberror.cpp [42/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF src/CMakeFiles/openbabel.dir/obutil.cpp.o.d -o src/CMakeFiles/openbabel.dir/obutil.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obutil.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obutil.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [43/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF src/CMakeFiles/openbabel.dir/op.cpp.o.d -o src/CMakeFiles/openbabel.dir/op.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/op.cpp [44/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF src/CMakeFiles/openbabel.dir/obiter.cpp.o.d -o src/CMakeFiles/openbabel.dir/obiter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h: In constructor ‘OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:378:12: warning: ‘OpenBabel::OBMolRingIter::_parent’ will be initialized after [-Wreorder] 378 | OBMol *_parent; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:377:13: warning: ‘OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr’ [-Wreorder] 377 | OBRing *_ptr; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h: In constructor ‘OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:378:12: warning: ‘OpenBabel::OBMolRingIter::_parent’ will be initialized after [-Wreorder] 378 | OBMol *_parent; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:377:13: warning: ‘OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr’ [-Wreorder] 377 | OBRing *_ptr; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) | ^~~~~~~~~~~~~ [45/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/patty.cpp.o -MF src/CMakeFiles/openbabel.dir/patty.cpp.o.d -o src/CMakeFiles/openbabel.dir/patty.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/patty.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/patty.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/patty.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [46/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF src/CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o src/CMakeFiles/openbabel.dir/parsmart.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp: In member function ‘bool OpenBabel::OBSmartsPattern::Init(const char*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1775:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1775 | if (strlen(buffer) > MaxSmartsLength) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1778:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1778 | delete[] _buffer; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp: In destructor ‘virtual OpenBabel::OBSmartsPattern::~OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1807:37: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 1807 | OBSmartsPattern::~OBSmartsPattern() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/parsmart.cpp:1807:37: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 1807 | OBSmartsPattern::~OBSmartsPattern() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [47/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/phmodel.cpp.o -MF src/CMakeFiles/openbabel.dir/phmodel.cpp.o.d -o src/CMakeFiles/openbabel.dir/phmodel.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/phmodel.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [48/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF src/CMakeFiles/openbabel.dir/plugin.cpp.o.d -o src/CMakeFiles/openbabel.dir/plugin.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/plugin.cpp [49/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF src/CMakeFiles/openbabel.dir/query.cpp.o.d -o src/CMakeFiles/openbabel.dir/query.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/query.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/query.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/query.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [50/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF src/CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::establish_pairs(SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:267:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 267 | if( elem->transform[i] >= _mol->NumAtoms() ){ /* No symmetric atom yet */ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::check_transform_order(SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:311:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 311 | if( elem->transform[i] == i ) /* Identity transform is Ok for any order */ | ~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:315:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 315 | if( elem->transform[j] == i ) | ~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘int OpenBabel::PointGroupPrivate::same_transform(SYMMETRY_ELEMENT*, SYMMETRY_ELEMENT*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:358:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 358 | if( b->transform[j] != i ) | ~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘OpenBabel::OBPointGroup::Symbol OpenBabel::OBPointGroup::IdentifyPointGroupSymbol(double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1958:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1958 | || d->NormalAxesCounts[2] >= maxAxis) { // Are there the perpendicular C2 axes? | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1961:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1961 | if (d->PlanesCount >= maxAxis + 1) { // Likely Dnh | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:1986:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1986 | else if (d->PlanesCount == maxAxis) { // Likely Dnd | ~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2088:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2088 | else if (d->PlanesCount >= maxAxis) { // Cnv | ~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp: In member function ‘void OpenBabel::OBPointGroup::Symmetrize(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2175:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2175 | for (unsigned int i = 0; i < d->PlanesCount; i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2182:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2182 | for (unsigned int i = 0; i < d->NormalAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/pointgroup.cpp:2189:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2189 | for (unsigned int i = 0; i < d->ImproperAxesCount; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~ [51/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF src/CMakeFiles/openbabel.dir/rand.cpp.o.d -o src/CMakeFiles/openbabel.dir/rand.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.cpp:429:15: warning: ‘void OpenBabel::GenerateSequence(unsigned int, unsigned int, unsigned int, unsigned int)’ defined but not used [-Wunused-function] 429 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ [52/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp: In member function ‘void OpenBabel::OBReactionFacadePrivate::FindComponents()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/reactionfacade.cpp:122:15: warning: unused variable ‘atm’ [-Wunused-variable] 122 | OBAtom* atm = &*atom; | ^~~ [53/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF src/CMakeFiles/openbabel.dir/residue.cpp.o.d -o src/CMakeFiles/openbabel.dir/residue.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/residue.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/residue.cpp:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [54/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF src/CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o src/CMakeFiles/openbabel.dir/rotamer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp: In member function ‘void OpenBabel::OBRotamerList::AddRotamer(std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:410:11: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 410 | while (angle < 0.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:412:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 412 | while (angle > 360.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp: In member function ‘bool OpenBabel::OBRotamerList::SetCurrentCoordinates(OpenBabel::OBMol&, std::vector)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:543:11: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 543 | while (angle < 0.0) | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotamer.cpp:545:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 545 | while (angle > 360.0) | ^~~~~ [55/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/ring.cpp.o -MF src/CMakeFiles/openbabel.dir/ring.cpp.o.d -o src/CMakeFiles/openbabel.dir/ring.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp: In constructor ‘OpenBabel::OBRingSearch::OBRingSearch()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:484:62: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 484 | OBRingSearch::OBRingSearch() : _d(new OBRingSearchPrivate()) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp: In destructor ‘OpenBabel::OBRingSearch::~OBRingSearch()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:521:31: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 521 | OBRingSearch::~OBRingSearch() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ring.cpp:521:31: warning: ‘OpenBabel::OBRingSearch::_bonds’ is deprecated [-Wdeprecated-declarations] 521 | OBRingSearch::~OBRingSearch() | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:124:40: note: declared here 124 | OB_DEPRECATED std::vector _bonds; //!< the internal list of closure bonds (deprecated) | ^~~~~~ [56/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -MF src/CMakeFiles/openbabel.dir/spectrophore.cpp.o.d -o src/CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/spectrophore.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/spectrophore.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [57/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF src/CMakeFiles/openbabel.dir/rotor.cpp.o.d -o src/CMakeFiles/openbabel.dir/rotor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp: In member function ‘bool OpenBabel::OBRotorList::SetEvalAtoms(OpenBabel::OBMol&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:335:28: warning: ‘void OpenBabel::OBRotor::SetEvalAtoms(OpenBabel::OBBitVec&)’ is deprecated [-Wdeprecated-declarations] 335 | rotor->SetEvalAtoms(eval); | ~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rotor.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:435:10: note: declared here 435 | void SetEvalAtoms(OBBitVec &bv) { _evalatoms = bv; } | ^~~~~~~~~~~~ [58/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF src/CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o src/CMakeFiles/openbabel.dir/tautomer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp: In member function ‘bool OpenBabel::TautomerImpl::IsPropagationValid(OpenBabel::OBMol*, const std::vector&, const std::vector&, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tautomer.cpp:407:13: warning: variable ‘numSingleBond’ set but not used [-Wunused-but-set-variable=] 407 | int numSingleBond = 0, numDoubleBond = 0, numUnassigned = 0; | ^~~~~~~~~~~~~ [59/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF src/CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o src/CMakeFiles/openbabel.dir/tokenst.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/tokenst.cpp [60/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF src/CMakeFiles/openbabel.dir/transform.cpp.o.d -o src/CMakeFiles/openbabel.dir/transform.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/transform.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [61/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF src/CMakeFiles/openbabel.dir/typer.cpp.o.d -o src/CMakeFiles/openbabel.dir/typer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/typer.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [62/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:277:28: warning: ‘virtual const char* OpenBabel::OBBase::GetTitle(bool) const’ was hidden [-Woverloaded-virtual=] 277 | virtual const char *GetTitle(bool /*replaceNewlines*/ = true) const { return ""; } | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/obmolecformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:99:15: note: by ‘std::string OpenBabel::OBReaction::GetTitle() const’ 99 | std::string GetTitle() const { return _title; } | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:278:21: warning: ‘virtual void OpenBabel::OBBase::SetTitle(const char*)’ was hidden [-Woverloaded-virtual=] 278 | virtual void SetTitle(const char *) {} | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/reaction.h:101:8: note: by ‘void OpenBabel::OBReaction::SetTitle(const std::string&)’ 101 | void SetTitle(const std::string& title) { _title=title; } | ^~~~~~~~ [63/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF src/CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o src/CMakeFiles/openbabel.dir/confsearch.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp: In member function ‘bool OpenBabel::OBDiversePoses::AddPose(std::vector, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:189:14: warning: unused variable ‘min_rmsd’ [-Wunused-variable] 189 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp: In member function ‘int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/confsearch.cpp:361:19: warning: ‘void OpenBabel::OBRotorList::SetFixAtoms(OpenBabel::OBBitVec&)’ is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 361 | rl.SetFixAtoms(fixed); | ~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:625:10: note: declared here 625 | void SetFixAtoms(OBBitVec &fix) | ^~~~~~~~~~~ [64/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF src/CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotamer.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const OpenBabel::RotorKeys&, const std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:250:12: warning: unused variable ‘score’ [-Wunused-variable] 250 | double score = ff->Energy(false); // no gradients | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘bool OpenBabel::OBConformerSearch::Setup(const OpenBabel::OBMol&, int, int, int, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:352:23: warning: variable ‘end_it’ set but not used [-Wunused-but-set-variable=] 352 | OBRotorIterator end_it = m_rotorList.EndRotors(); | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::local_opt()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:812:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 812 | for (i = 1; i <= m_rotorList.Size(); ++i, rotor = m_rotorList.NextRotor(ri)) | ~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::reproduce(OpenBabel::RotorKey&, OpenBabel::RotorKey&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:877:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 877 | if (iniche > -1) | ~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘int OpenBabel::OBConformerSearch::share_fitness()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1042:37: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1042 | if ((dynamic_niches.size () < nb_niches) && (dynamic_niches.size () %2)) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1057:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1057 | if (dist < min_dist ) | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1070:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1070 | if (imax == -1) | ~~~~~^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1087:40: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1087 | if (dynamic_niches.size () < nb_niches) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1013:10: warning: unused variable ‘flag_niched’ [-Wunused-variable] 1013 | bool flag_niched = false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘double OpenBabel::OBConformerSearch::sharing_generation()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1176 | while (ninsert < ((half_pop * 2) / 3)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1185:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1185 | if (iround < imax) | ~~~~~~~^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1193:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1193 | if (ninsert >= half_pop) | ~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1218:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1218 | while (ninsert < half_pop) | ~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1142:23: warning: unused variable ‘lowest’ [-Wunused-variable] 1142 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:1142:37: warning: unused variable ‘highest’ [-Wunused-variable] 1142 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:25: In member function ‘OpenBabel::OBRandomMT::OBRandomMT()’, inlined from ‘OpenBabel::OBConformerSearch::NextGeneration()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:473:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:112:43: warning: ‘generator’ may be used uninitialized [-Wmaybe-uninitialized] 112 | OBRandomMT() : OBRandomMT{randomSeed()} {} | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h: In member function ‘OpenBabel::OBConformerSearch::NextGeneration()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:157:19: note: by argument 1 of type ‘const struct OBRandomMT *’ to ‘OpenBabel::OBRandomMT::randomSeed() const’ declared here 157 | uint_fast64_t randomSeed() const; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:473:16: note: ‘generator’ declared here 473 | OBRandomMT generator{}; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp: In member function ‘OpenBabel::OBConformerSearch::MakeSelection()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/conformersearch.cpp:568:31: warning: ‘highest’ may be used uninitialized [-Wmaybe-uninitialized] 568 | double sum = 0.0, lowest, highest; | ^~~~~~~ [65/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/dlhandler_unix.cpp [66/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF src/CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In function ‘unsigned int OpenBabel::GetAtomSymClass(OBAtom*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:284:11: warning: unused variable ‘nclasses’ [-Wunused-variable] 284 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘virtual void OpenBabel::OBDepictPrivate::DrawAtomLabel(const std::string&, int, const OpenBabel::vector3&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1028:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable=] 1028 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1033:21: warning: variable ‘metrics’ set but not used [-Wunused-but-set-variable=] 1033 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘void OpenBabel::OBDepictPrivateBallAndStick::DrawAromaticRingBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, const OpenBabel::vector3&, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1242:99: warning: expression does not compute the number of elements in this array; element type is ‘const float’, not ‘double’ [-Wsizeof-array-div] 1242 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1242:100: note: add parentheses around ‘sizeof (double)’ to silence this warning 1242 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^~~~~~~~~~~~~~ | ( ) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:1241:24: note: array ‘dashpattern’ declared here 1241 | static const float dashpattern[] = {5., 5.}; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp: In member function ‘OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:461:22: warning: ‘min_x’ may be used uninitialized [-Wmaybe-uninitialized] 461 | width = max_x - min_x + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:434:14: note: ‘min_x’ was declared here 434 | double min_x, max_x; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:461:22: warning: ‘max_x’ may be used uninitialized [-Wmaybe-uninitialized] 461 | width = max_x - min_x + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:434:21: note: ‘max_x’ was declared here 434 | double min_x, max_x; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:462:22: warning: ‘min_y’ may be used uninitialized [-Wmaybe-uninitialized] 462 | height = max_y - min_y + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:435:14: note: ‘min_y’ was declared here 435 | double min_y, max_y; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:462:22: warning: ‘max_y’ may be used uninitialized [-Wmaybe-uninitialized] 462 | height = max_y - min_y + 2*margin; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:435:21: note: ‘max_y’ was declared here 435 | double min_y, max_y; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:464:25: warning: ‘min_z’ may be used uninitialized [-Wmaybe-uninitialized] 464 | d->zScale = max_z - min_z; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:436:14: note: ‘min_z’ was declared here 436 | double min_z, max_z; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:464:25: warning: ‘max_z’ may be used uninitialized [-Wmaybe-uninitialized] 464 | d->zScale = max_z - min_z; | ~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/depict.cpp:436:21: note: ‘max_z’ was declared here 436 | double min_z, max_z; | ^~~~~ [67/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h: In constructor ‘OpenBabel::SVGPainter::SVGPainter(std::ostream&, std::set >*, bool, double, double)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:77:11: warning: ‘OpenBabel::SVGPainter::m_fontPointSize’ will be initialized after [-Wreorder] 77 | int m_fontPointSize; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:75:12: warning: ‘bool OpenBabel::SVGPainter::m_isFillcolor’ [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:75:12: warning: ‘OpenBabel::SVGPainter::m_isFillcolor’ will be initialized after [-Wreorder] 75 | bool m_isFillcolor; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/svgpainter.h:74:32: warning: ‘std::set >* OpenBabel::SVGPainter::m_Gradients’ [-Wreorder] 74 | std::set *m_Gradients; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/svgpainter.cpp:34:3: warning: when initialized here [-Wreorder] 34 | SVGPainter::SVGPainter(ostream& ofs, std::set* gradients, bool withViewBox, | ^~~~~~~~~~ [68/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -MF src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/matrix3x3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/matrix3x3.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [69/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -MF src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/spacegroup.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/spacegroup.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [70/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -MF src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/transform3d.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/transform3d.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [71/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -MF src/CMakeFiles/openbabel.dir/math/vector3.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/vector3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/vector3.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [72/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF src/CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o src/CMakeFiles/openbabel.dir/distgeom.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:55: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 55 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:56: warning: ignoring ‘#pragma warning ’ [-Wunknown-pragmas] 56 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:642:3: warning: multi-line comment [-Wcomment] 642 | // \ | ^ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp: In member function ‘void OpenBabel::OBDistanceGeometry::SetAromaticRingBounds()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:458:14: warning: variable ‘angle’ set but not used [-Wunused-but-set-variable=] 458 | double angle = 180.0 - (360.0 / size); | ^~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:31: In member function ‘OpenBabel::OBRandomMT::OBRandomMT()’, inlined from ‘OpenBabel::OBDistanceGeometry::generateInitialCoords()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:1059:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:112:43: warning: ‘generator’ may be used uninitialized [-Wmaybe-uninitialized] 112 | OBRandomMT() : OBRandomMT{randomSeed()} {} | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h: In member function ‘OpenBabel::OBDistanceGeometry::generateInitialCoords()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/rand.h:157:19: note: by argument 1 of type ‘const struct OBRandomMT *’ to ‘OpenBabel::OBRandomMT::randomSeed() const’ declared here 157 | uint_fast64_t randomSeed() const; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/distgeom.cpp:1059:16: note: ‘generator’ declared here 1059 | OBRandomMT generator{}; | ^~~~~~~~~ [73/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF src/CMakeFiles/openbabel.dir/math/align.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/align.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp: In member function ‘std::vector OpenBabel::OBAlign::GetAlignment()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/math/align.cpp:393:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 393 | for (unsigned int i=0; i _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [85/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/filters.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/filters.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [86/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/inchidescriptor.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/inchidescriptor.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ [87/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:29: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp: In function ‘bool OpenBabel::TetStereoToWedgeHash(OBMol&, std::map&, std::map&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:2795:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2951 | return true; | ^~~~~~ [88/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/smartsdescriptors.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/descriptors/smartsdescriptors.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [89/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger2.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger2.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [90/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp: In member function ‘virtual bool OpenBabel::PatternFP::GetFingerprint(OpenBabel::OBBase*, std::vector&, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/finger3.cpp:109:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 109 | while(n < _bitcount) | ~~^~~~~~~~~~~ [91/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/fingerecfp.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/fingerprints/fingerecfp.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [92/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:29: In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:573:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:573:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:588:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGaff::OBFFBondCalculationGaff(OpenBabel::OBFFBondCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:31:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGaff*, OpenBabel::OBFFBondCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:588:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:536:29: note: ‘bondcalc’ declared here 536 | OBFFBondCalculationGaff bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:638:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGaff::OBFFAngleCalculationGaff(OpenBabel::OBFFAngleCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGaff*, OpenBabel::OBFFAngleCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:654:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:597:30: note: ‘anglecalc’ declared here 597 | OBFFAngleCalculationGaff anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:708:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGaff::OBFFTorsionCalculationGaff(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:47:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGaff*, OpenBabel::OBFFTorsionCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:725:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:663:32: note: ‘torsioncalc’ declared here 663 | OBFFTorsionCalculationGaff torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 84B]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 84B]’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 85B]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM [(struct OBFFVDWCalculationGaff *)&vdwcalc + 85B]’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGaff::OBFFVDWCalculationGaff(OpenBabel::OBFFVDWCalculationGaff const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGaff*, OpenBabel::OBFFVDWCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1004:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:63:9: warning: ‘MEM[(const struct OBFFVDWCalculationGaff &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 63 | class OBFFVDWCalculationGaff : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:909:28: note: ‘MEM[(const struct OBFFVDWCalculationGaff &)&vdwcalc].rab’ was declared here 909 | OBFFVDWCalculationGaff vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1013:38: warning: ‘MEM[(const struct OBFFElectrostaticCalculationGaff &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 1013 | OBFFElectrostaticCalculationGaff elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGaff::OBFFElectrostaticCalculationGaff(OpenBabel::OBFFElectrostaticCalculationGaff const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.h:72:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGaff*, OpenBabel::OBFFElectrostaticCalculationGaff const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGaff const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1055:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp: In member function ‘OpenBabel::OBForceFieldGaff::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldgaff.cpp:1013:38: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 1013 | OBFFElectrostaticCalculationGaff elecalc; | ^~~~~~~ [93/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:478:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:478:40: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:493:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationGhemical::OBFFBondCalculationGhemical(OpenBabel::OBFFBondCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:29:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationGhemical*, OpenBabel::OBFFBondCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:493:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:436:33: note: ‘bondcalc’ declared here 436 | OBFFBondCalculationGhemical bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:546:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationGhemical::OBFFAngleCalculationGhemical(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:38:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationGhemical*, OpenBabel::OBFFAngleCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:562:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:502:34: note: ‘anglecalc’ declared here 502 | OBFFAngleCalculationGhemical anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:632:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&torsioncalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’, inlined from ‘OpenBabel::OBFFTorsionCalculationGhemical::OBFFTorsionCalculationGhemical(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:46:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationGhemical*, OpenBabel::OBFFTorsionCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:683:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16: warning: ‘MEM[(const struct OBFFCalculation4 &)&torsioncalc].force_d’ may be used uninitialized [-Wmaybe-uninitialized] 199 | class OBFPRT OBFFCalculation4: public OBFFCalculation3 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:571:36: note: ‘torsioncalc’ declared here 571 | OBFFTorsionCalculationGhemical torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: warning: ‘MEM[(const struct OBFFVDWCalculationGhemical &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9: warning: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 84B]’ may be used uninitialized [-Wmaybe-uninitialized] 56 | class OBFFVDWCalculationGhemical : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 84B]’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9: warning: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 85B]’ may be used uninitialized [-Wmaybe-uninitialized] 56 | class OBFFVDWCalculationGhemical : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘MEM [(struct OBFFVDWCalculationGhemical *)&vdwcalc + 85B]’ was declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationGhemical::OBFFVDWCalculationGhemical(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:56:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationGhemical*, OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFVDWCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:787:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:692:32: note: ‘vdwcalc’ declared here 692 | OBFFVDWCalculationGhemical vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: warning: ‘MEM[(const struct OBFFElectrostaticCalculationGhemical &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationGhemical::OBFFElectrostaticCalculationGhemical(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.h:71:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationGhemical*, OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationGhemical const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationGhemical const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:838:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp: In member function ‘OpenBabel::OBForceFieldGhemical::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldghemical.cpp:796:42: note: ‘elecalc’ declared here 796 | OBFFElectrostaticCalculationGhemical elecalc; | ^~~~~~~ [94/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/typer.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/ring.h:30, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2798:32: warning: variable ‘bondtype1’ set but not used [-Wunused-but-set-variable=] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2798:43: warning: variable ‘bondtype2’ set but not used [-Wunused-but-set-variable=] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:289:40: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:289:58: required from here 289 | return gradients ? E_Bond() : E_Bond(); | ~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 148 | for (int i = 0; i < _bondcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:295:41: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:295:60: required from here 295 | return gradients ? E_Angle() : E_Angle(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:263:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 263 | for (int i = 0; i < _anglecalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:301:42: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:301:62: required from here 301 | return gradients ? E_StrBnd() : E_StrBnd(); | ~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:376:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 376 | for (int i = 0; i < _strbndcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:307:43: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:307:64: required from here 307 | return gradients ? E_Torsion() : E_Torsion(); | ~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:512:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 512 | for (int i = 0; i < _torsioncalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:313:39: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:313:56: required from here 313 | return gradients ? E_OOP() : E_OOP(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:610:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 610 | for (int i = 0; i < _oopcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:319:39: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:319:56: required from here 319 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:707:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 707 | for (int i = 0; i < _vdwcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:325:49: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In instantiation of ‘double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:325:76: required from here 325 | return gradients ? E_Electrostatic() : E_Electrostatic(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:793:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 793 | for (int i = 0; i < _electrostaticcalculations.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::PerceiveAromatic()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1451:30: warning: ‘index’ may be used uninitialized [-Wmaybe-uninitialized] 1451 | ringbond = _mol.GetBond(first_rj, index); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1388:12: note: ‘index’ was declared here 1388 | int n, index, ringsize, first_rj, prev_rj, pi_electrons, c60; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1451:30: warning: ‘first_rj’ may be used uninitialized [-Wmaybe-uninitialized] 1451 | ringbond = _mol.GetBond(first_rj, index); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:1388:29: note: ‘first_rj’ was declared here 1388 | int n, index, ringsize, first_rj, prev_rj, pi_electrons, c60; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:44: In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2765:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2765:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2775:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationMMFF94::OBFFBondCalculationMMFF94(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationMMFF94*, OpenBabel::OBFFBondCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2775:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2707:31: note: ‘bondcalc’ declared here 2707 | OBFFBondCalculationMMFF94 bondcalc; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: warning: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: warning: ‘MEM[(const struct OBFFAngleCalculationMMFF94 &)&anglecalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ was declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFAngleCalculationMMFF94::OBFFAngleCalculationMMFF94(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationMMFF94*, OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2934:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&anglecalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2796:32: note: ‘anglecalc’ declared here 2796 | OBFFAngleCalculationMMFF94 anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_theta’ may be used uninitialized [-Wmaybe-uninitialized] 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rab’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].delta_rbc’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].energy’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&strbndcalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rbc’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].rbc’ was declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_c’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_abc_c’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&strbndcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’, inlined from ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16: warning: ‘MEM[(const struct OBFFCalculation3 &)&strbndcalc].force_c’ may be used uninitialized [-Wmaybe-uninitialized] 168 | class OBFPRT OBFFCalculation3: public OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_a’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_ab_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ In member function ‘OpenBabel::OBFFStrBndCalculationMMFF94::OBFFStrBndCalculationMMFF94(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFStrBndCalculationMMFF94*, OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFStrBndCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFStrBndCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3077:36: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:49:9: warning: ‘MEM[(const struct OBFFStrBndCalculationMMFF94 &)&strbndcalc].force_bc_b’ may be used uninitialized [-Wmaybe-uninitialized] 49 | class OBFFStrBndCalculationMMFF94 : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:2797:33: note: ‘strbndcalc’ declared here 2797 | OBFFStrBndCalculationMMFF94 strbndcalc; | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: warning: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].tor’ may be used uninitialized [-Wmaybe-uninitialized] 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationMMFF94::OBFFTorsionCalculationMMFF94(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:61:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3357:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: note: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ was declared here 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFTorsionCalculationMMFF94::OBFFTorsionCalculationMMFF94(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationMMFF94*, OpenBabel::OBFFTorsionCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3357:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:61:9: warning: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].cosine’ may be used uninitialized [-Wmaybe-uninitialized] 61 | class OBFFTorsionCalculationMMFF94 : public OBFFCalculation4 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3096:34: note: ‘MEM[(const struct OBFFTorsionCalculationMMFF94 &)&torsioncalc].cosine’ was declared here 3096 | OBFFTorsionCalculationMMFF94 torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3492:30: warning: ‘MEM[(const struct OBFFVDWCalculationMMFF94 &)&vdwcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 3492 | OBFFVDWCalculationMMFF94 vdwcalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFVDWCalculationMMFF94::OBFFVDWCalculationMMFF94(OpenBabel::OBFFVDWCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:78:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFVDWCalculationMMFF94*, OpenBabel::OBFFVDWCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFVDWCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3616:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3492:30: note: ‘MEM[(const struct OBFFCalculation2 &)&vdwcalc].energy’ was declared here 3492 | OBFFVDWCalculationMMFF94 vdwcalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3625:40: warning: ‘MEM[(const struct OBFFElectrostaticCalculationMMFF94 &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 3625 | OBFFElectrostaticCalculationMMFF94 elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationMMFF94::OBFFElectrostaticCalculationMMFF94(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.h:89:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationMMFF94*, OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationMMFF94 const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3678:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:3625:40: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 3625 | OBFFElectrostaticCalculationMMFF94 elecalc; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4336:13: warning: ‘etot’ may be used uninitialized [-Wmaybe-uninitialized] 4336 | delta = (Energy() - etot); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:12: note: ‘etot’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:31: In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4308:15: /usr/include/bits/stdio2.h:68:35: warning: ‘ebond’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:18: note: ‘ebond’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4312:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eangle’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:25: note: ‘eangle’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4320:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eoop’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:33: note: ‘eoop’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4316:15: /usr/include/bits/stdio2.h:68:35: warning: ‘estbn’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:39: note: ‘estbn’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4324:15: /usr/include/bits/stdio2.h:68:35: warning: ‘etor’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:46: note: ‘etor’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4328:15: /usr/include/bits/stdio2.h:68:35: warning: ‘evdw’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:52: note: ‘evdw’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBForceFieldMMFF94::Validate()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4332:15: /usr/include/bits/stdio2.h:68:35: warning: ‘eeq’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp: In member function ‘OpenBabel::OBForceFieldMMFF94::Validate()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefieldmmff94.cpp:4009:58: note: ‘eeq’ was declared here 4009 | double etot, ebond, eangle, eoop, estbn, etor, evdw, eeq; | ^~~ [95/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:28: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘void OpenBabel::OBFFElectrostaticCalculationUFF::Compute()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:516:49: warning: ‘static double OpenBabel::OBForceField::VectorLengthDerivative(OpenBabel::vector3&, OpenBabel::vector3&)’ is deprecated [-Wdeprecated-declarations] 516 | rab = OBForceField::VectorLengthDerivative(da, db); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:1569:19: note: declared here 1569 | static double VectorLengthDerivative(vector3 &a, vector3 &b); | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = true]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:479:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = true]’ 479 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:193:37: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:432:14: warning: unused variable ‘ab’ [-Wunused-variable] 432 | double ab[3]; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In instantiation of ‘void OpenBabel::OBFFVDWCalculationUFF::Compute() [with bool = false]’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:479:37: required from ‘double OpenBabel::OBForceFieldUFF::E_VDW() [with bool = false]’ 479 | i->template Compute(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:193:54: required from here 193 | return gradients ? E_VDW() : E_VDW(); | ~~~~~~~~~~~~^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:432:14: warning: unused variable ‘ab’ [-Wunused-variable] 432 | double ab[3]; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: warning: ‘MEM[(const struct OBFFElectrostaticCalculationUFF &)&elecalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].energy’ was declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFElectrostaticCalculationUFF::OBFFElectrostaticCalculationUFF(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:82:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFElectrostaticCalculationUFF*, OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFElectrostaticCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFElectrostaticCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1594:45: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&elecalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupElectrostatics()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1543:37: note: ‘elecalc’ declared here 1543 | OBFFElectrostaticCalculationUFF elecalc; | ^~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].energy’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9: warning: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].rab’ may be used uninitialized [-Wmaybe-uninitialized] 30 | class OBFFBondCalculationUFF : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].rab’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9: warning: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] 30 | class OBFFBondCalculationUFF : public OBFFCalculation2 | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘MEM[(const struct OBFFBondCalculationUFF &)&bondcalc].delta’ was declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_a’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFBondCalculationUFF::OBFFBondCalculationUFF(OpenBabel::OBFFBondCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:30:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFBondCalculationUFF*, OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFBondCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFBondCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:970:34: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&bondcalc].force_b’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:746:28: note: ‘bondcalc’ declared here 746 | OBFFBondCalculationUFF bondcalc; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].theta’ may be used uninitialized [-Wmaybe-uninitialized] 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].delta’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rij’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rjk’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].rik’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFCalculation2 &)&anglecalc].energy’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].at’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM[(const struct OBFFAngleCalculationUFF &)&anglecalc].at’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘MEM [(struct OBFFAngleCalculationUFF *)&anglecalc + 124B]’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘MEM [(struct OBFFAngleCalculationUFF *)&anglecalc + 124B]’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: warning: ‘MEM[(const struct OBFFTorsionCalculationUFF &)&torsioncalc].tor’ may be used uninitialized [-Wmaybe-uninitialized] 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFCalculation2::OBFFCalculation2(OpenBabel::OBFFCalculation2 const&)’, inlined from ‘OpenBabel::OBFFCalculation3::OBFFCalculation3(OpenBabel::OBFFCalculation3 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:168:16, inlined from ‘OpenBabel::OBFFCalculation4::OBFFCalculation4(OpenBabel::OBFFCalculation4 const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:199:16, inlined from ‘OpenBabel::OBFFTorsionCalculationUFF::OBFFTorsionCalculationUFF(OpenBabel::OBFFTorsionCalculationUFF const&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:53:9, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFTorsionCalculationUFF*, OpenBabel::OBFFTorsionCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFTorsionCalculationUFF*, OpenBabel::OBFFTorsionCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::push_back(OpenBabel::OBFFTorsionCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1411:30, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1341:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:137:16: warning: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ may be used uninitialized [-Wmaybe-uninitialized] 137 | class OBFPRT OBFFCalculation2 | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: note: ‘MEM[(const struct OBFFCalculation2 &)&torsioncalc].energy’ was declared here 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1334:15: warning: ‘torsioncalc.V’ may be used uninitialized [-Wmaybe-uninitialized] 1334 | if (fabs(torsioncalc.V) < 2e-6) // don't bother calcuating this torsion | ~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: note: ‘torsioncalc.V’ was declared here 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1339:48: warning: ‘torsioncalc.n’ may be used uninitialized [-Wmaybe-uninitialized] 1339 | torsioncalc.cosNPhi0 = cos(torsioncalc.n * DEG_TO_RAD * phi0); /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:748:31: note: ‘torsioncalc.n’ was declared here 748 | OBFFTorsionCalculationUFF torsioncalc; | ^~~~~~~~~~~ In member function ‘OpenBabel::OBFFAngleCalculationUFF::OBFFAngleCalculationUFF(OpenBabel::OBFFAngleCalculationUFF const&)’, inlined from ‘std::__new_allocator::construct(OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, OpenBabel::OBFFAngleCalculationUFF*, OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘std::vector >::_M_realloc_append(OpenBabel::OBFFAngleCalculationUFF const&)void’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘std::vector >::push_back(OpenBabel::OBFFAngleCalculationUFF const&)’ at /usr/include/c++/16/bits/stl_vector.h:1417:21, inlined from ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:1190:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.h:39:9: warning: ‘anglecalc.n’ may be used uninitialized [-Wmaybe-uninitialized] 39 | class OBFFAngleCalculationUFF : public OBFFCalculation3 | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp: In member function ‘OpenBabel::OBForceFieldUFF::SetupCalculations()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/forcefields/forcefielduff.cpp:747:29: note: ‘anglecalc.n’ was declared here 747 | OBFFAngleCalculationUFF anglecalc; | ^~~~~~~~~ [96/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addfilename.cpp [97/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addinindex.cpp [98/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addpolarh.cpp [99/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/addnonpolarh.cpp [100/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/canonical.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/canonical.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [101/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp: In member function ‘virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:91:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 91 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/changecell.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 122 | for(int i = 0; i < vcvs.size(); i++) | ~~^~~~~~~~~~~~~ [102/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/delpolarh.cpp [103/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/delnonpolarh.cpp [104/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen2D.cpp [105/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/fillUC.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/fillUC.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [106/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp:33: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp: In member function ‘virtual bool OpenBabel::OpMinimize::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/forcefield.cpp:282:10: warning: unused variable ‘done’ [-Wunused-variable] 282 | bool done = true; | ^~~~ [107/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen3d.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/gen3d.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [108/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/largest.cpp [109/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/loader.cpp [110/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/neutralize.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/neutralize.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [111/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp: In member function ‘virtual bool OpenBabel::OpSplit::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp:95:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 95 | if(!pConv) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opsplit.cpp:98:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 98 | if(pConv->IsFirstInput()) | ^~ [112/538] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -shared -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o src/CMakeFiles/openbabel.dir/math/vector3.cpp.o src/CMakeFiles/openbabel.dir/math/align.cpp.o src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o /usr/lib/libm.so -ldl /usr/lib/libz.so && : [113/538] /usr/bin/cmake -E cmake_symlink_library lib/libopenbabel.so.8.0.0 lib/libopenbabel.so.8 lib/libopenbabel.so && : [114/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/optransform.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/phmodel.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/optransform.h:19, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/optransform.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [115/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -python -c++ -doxygen -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/python/openbabel/openbabel-python.cpp -DHAVE_EIGEN3 -outdir /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/python/openbabel /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-python.i /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/spectrophore.h:571: Warning 312: Nested struct not currently supported (ignored). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/spectrophore.h:578: Warning 312: Nested struct not currently supported (ignored). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bitvec.h:59: Warning 560: Unknown Doxygen command: users. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$a. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$c. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:619: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:628: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:628: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 562: Expected Doxygen command: f$. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:649: Warning 561: Unexpected end of Doxygen comment encountered. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:624: Warning 560: Unknown Doxygen command: f$a. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:624: Warning 560: Unknown Doxygen command: f$c. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:631: Warning 560: Unknown Doxygen command: f$S. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 562: Expected Doxygen command: f$. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 566: Unexpected iterator value in DoxygenParser::parse /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/stereo/stereo.h:660: Warning 561: Unexpected end of Doxygen comment encountered. /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [116/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -perl5 -c++ -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/perl/openbabel-perl.cpp -outdir /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/perl /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-perl.i /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [117/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/partialcharges.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/partialcharges.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [118/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/readconformers.cpp [119/538] cd /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/scripts && /usr/bin/swig -ruby -c++ -small -O -templatereduce -naturalvar -autorename -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -o /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.txt /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/openbabel-ruby.i && sed -e '' -e's/void Init_OpenBabel/void Init_openbabel/' /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.cpp && /usr/bin/cmake -E remove /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/scripts/ruby/openbabel-ruby.txt /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:404: Warning 509: Overloaded method OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:403: Warning 509: as it is shadowed by OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:407: Warning 509: Overloaded method OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:406: Warning 509: as it is shadowed by OpenBabel::impl::MolGetBonds(OpenBabel::OBMol const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:410: Warning 509: Overloaded method OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:409: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetBonds(OpenBabel::OBAtom const &). /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:413: Warning 509: Overloaded method OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const *) effectively ignored, /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obiter.h:412: Warning 509: as it is shadowed by OpenBabel::impl::AtomGetNbrs(OpenBabel::OBAtom const &). [120/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/sort.cpp [121/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp:16: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/matrix3x3.h:26, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/transform3d.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/spacegroup.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/generic.h:29, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/ophighlight.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [122/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/xout.cpp [123/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:15: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/query.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.h:18, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp: In member function ‘virtual bool OpenBabel::OpNewS::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opisomorph.cpp:303:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 303 | if(pmol->NumHvyAtoms() != nPatternAtoms) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [124/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/bond.h:32, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/rotor.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/conformersearch.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp: In member function ‘virtual bool OpenBabel::OpConformer::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:294:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 294 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/conformer.cpp:294:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 294 | if (p1>pmol->NumAtoms() || p2>pmol->NumAtoms()){ | ~~^~~~~~~~~~~~~~~~~ [125/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opalign.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [126/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/forcefield.h:27, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp: In member function ‘void OpenBabel::OpConfab::Run(OpenBabel::OBConversion*, OpenBabel::OBMol*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/opconfab.cpp:167:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 167 | for (; c < mol.NumConformers(); ++c) { | ~~^~~~~~~~~~~~~~~~~~~~~ [127/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/gasteiger.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/gasteiger.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [128/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eem.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eem.cpp:24: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [129/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/none.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/none.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [130/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/mmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/mmff94.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [131/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp: In member function ‘virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/fromfile.cpp:102:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 102 | for ( int i = 1; i <= mol.NumAtoms(); i++) | ~~^~~~~~~~~~~~~~~~~ [132/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/eqeq.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [133/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qeq.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [134/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:26: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In constructor ‘OpenBabel::OBSmilesParser::OBSmilesParser(bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:291:10: warning: ‘OpenBabel::OBSmilesParser::_preserve_aromaticity’ will be initialized after [-Wreorder] 291 | bool _preserve_aromaticity; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:289:9: warning: ‘int OpenBabel::OBSmilesParser::_rxnrole’ [-Wreorder] 289 | int _rxnrole; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder] 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:669:15: warning: variable ‘atom’ set but not used [-Wunused-but-set-variable=] 669 | OBAtom* atom; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘int OpenBabel::OBSmilesParser::NumConnections(OpenBabel::OBAtom*, bool)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2232:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2232 | if (idx-1 < _hcount.size() && _hcount[idx-1] > 0) | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2717:10: warning: variable ‘symbol’ set but not used [-Wunused-but-set-variable=] 2717 | char symbol[10]; | ^~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2721:10: warning: unused variable ‘normalValence’ [-Wunused-variable] 2721 | bool normalValence = true; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2722:10: warning: unused variable ‘writeExplicitHydrogen’ [-Wunused-variable] 2722 | bool writeExplicitHydrogen = false; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘bool OpenBabel::OBMol2Cansmi::BuildCanonTree(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::vector&, OpenBabel::OBCanSmiNode*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3171:22: warning: unused variable ‘bond_order’ [-Wunused-variable] 3171 | unsigned int bond_order = bond->GetBondOrder(); | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3166:20: warning: unused variable ‘nbr_bond_order’ [-Wunused-variable] 3166 | unsigned int nbr_bond_order = nbr_bond->GetBondOrder(); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘std::vector OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3318:11: warning: unused variable ‘bo’ [-Wunused-variable] 3318 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBondOrder(); // CJ: why was this line added? bo is never used? | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3931:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3931 | for (int i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 3937 | for (int i=0; i >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2897:35: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2897 | snprintf(tcount, 10, "%d", hcount); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:23: In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2897:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2889:35: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 2889 | snprintf(tcount, 10, "%d", i); | ^ In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector >&, std::vector >&, std::__cxx11::basic_string, std::allocator >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:2889:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp: In member function ‘OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::__cxx11::basic_string, std::allocator >&, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:32: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 8 [-Wformat-truncation=] 3563 | snprintf(digits, 8, "%d", bci->ringdigit); | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:31: note: directive argument in the range [-2147483648, 99] 3563 | snprintf(digits, 8, "%d", bci->ringdigit); | ^~~~ In function ‘snprintf’, inlined from ‘OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, std::__cxx11::basic_string, std::allocator >&, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/smilesformat.cpp:3563:19: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 12 bytes into a destination of size 8 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [135/538] /usr/bin/g++ -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/chargemodel.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/charges/qtpie.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [136/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp: In member function ‘virtual int OpenBabel::MOL2Format::SkipObjects(int, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:794:10: warning: unused variable ‘ch’ [-Wunused-variable] 794 | char ch = ifs.peek(); | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mol2format.cpp:86:15: warning: ‘bool OpenBabel::IsThiocarboxylSulfur(OBAtom*)’ defined but not used [-Wunused-function] 86 | static bool IsThiocarboxylSulfur(OBAtom* queryatom) | ^~~~~~~~~~~~~~~~~~~~ [137/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obfunctions.h:22, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:612:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 612 | if (origin == pUC->GetSpaceGroup()->HEXAGONAL_ORIGIN) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:681:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 681 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:17: In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:681:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:701:70: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 701 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:701:29: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 5 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:35: warning: ‘%+d’ directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:34: note: directive argument in the range [-32768, 32767] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~~~ In function ‘snprintf’, inlined from ‘OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:739:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 7 bytes into a destination of size 3 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp: In member function ‘OpenBabel::PDBFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32761 [-Wstringop-truncation] 299 | strncpy(integerBuffer, buffer+columnAsSpecifiedInPDB-1, 5); | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32756 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32751 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32746 [-Wstringop-truncation] /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pdbformat.cpp:299:12: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 32741 [-Wstringop-truncation] [138/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:31: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:43: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h: In function ‘unsigned int MDLValence(unsigned int, int, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:51:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 51 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:51:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 51 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:64:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 64 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:64:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 64 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:77:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 77 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:77:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 77 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:90:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 90 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:90:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 90 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:103:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 103 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:103:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 103 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:116:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 116 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:116:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 116 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:119:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 119 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:119:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 119 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:121:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 121 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:121:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 121 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:134:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 134 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:134:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 134 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:137:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 137 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:137:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 137 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:139:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 139 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:139:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 139 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:152:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 152 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:152:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 152 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:155:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 155 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:155:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 155 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:157:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 157 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:157:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 157 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:170:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 170 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:170:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 170 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:173:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 173 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:173:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 173 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:175:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 175 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:175:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 175 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:188:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 188 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:188:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 188 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:191:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 191 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:191:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 191 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:193:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 193 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:193:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 193 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:206:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 206 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:206:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 206 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:209:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 209 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:209:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 209 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:211:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 211 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:211:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 211 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:223:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 223 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:223:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 223 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:226:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 226 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:226:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 226 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:228:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 228 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:228:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 228 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:240:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 240 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:240:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 240 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:243:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 243 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:243:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 243 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:245:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 245 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:245:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 245 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:257:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 257 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:257:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 257 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:260:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 260 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:260:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 260 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:262:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 262 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:262:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 262 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:274:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 274 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:274:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 274 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:277:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 277 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:277:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 277 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:279:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 279 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:279:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 279 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:291:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 291 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:291:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 291 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:294:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 294 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:294:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 294 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:296:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 296 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:296:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 296 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:298:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 298 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:298:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 298 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:310:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 310 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:310:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 310 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:313:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 313 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:313:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 313 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:315:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 315 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:315:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 315 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:317:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 317 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:317:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 317 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:329:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 329 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:329:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 329 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:332:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 332 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:332:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 332 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:334:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 334 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:334:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 334 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:336:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 336 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:336:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 336 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:348:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 348 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:348:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 348 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:351:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 351 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:351:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 351 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:353:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 353 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:353:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 353 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:355:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 355 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:355:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 355 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:367:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 367 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:367:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 367 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:370:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 370 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:370:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 370 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:372:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 372 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:372:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 372 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:374:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 374 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:374:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 374 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:385:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 385 | if (val <= 7) return 7; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:385:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 385 | if (val <= 7) return 7; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:388:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 388 | if (val <= 6) return 6; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:388:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 388 | if (val <= 6) return 6; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:390:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 390 | if (val <= 5) return 5; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:390:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 390 | if (val <= 5) return 5; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:392:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 392 | if (val <= 4) return 4; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:392:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 392 | if (val <= 4) return 4; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:394:15: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 394 | if (val <= 3) return 3; break; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:394:40: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 394 | if (val <= 3) return 3; break; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h: In function ‘unsigned int HYDValence(unsigned int, int, unsigned int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlvalence.h:416:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 416 | if (val > impval) { | ~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘virtual bool OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:776:20: warning: variable ‘count’ set but not used [-Wunused-but-set-variable=] 776 | unsigned int count = 0; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘bool OpenBabel::MDLFormat::ReadAtomBlock(std::istream&, OpenBabel::OBMol&, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1502:10: warning: unused variable ‘chiralWatch’ [-Wunused-variable] 1502 | bool chiralWatch=false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘OpenBabel::MDLFormat::GetTimeDate[abi:cxx11]()’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:27: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=] 1730 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:22: note: directive argument in the range [-2147483648, 2147483547] 1730 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/iomanip:47, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:27: In function ‘snprintf’, inlined from ‘OpenBabel::MDLFormat::GetTimeDate[abi:cxx11]()’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:1730:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 56 bytes into a destination of size 11 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp: In member function ‘OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*, std::map, std::allocator > >*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2046:7: warning: ‘a1_stereo’ may be used uninitialized [-Wmaybe-uninitialized] 2046 | if (a1_stereo == a2_stereo) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2011:31: note: ‘a1_stereo’ was declared here 2011 | OBStereo::BondDirection a1_stereo, a2_stereo; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2046:7: warning: ‘a2_stereo’ may be used uninitialized [-Wmaybe-uninitialized] 2046 | if (a1_stereo == a2_stereo) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/mdlformat.cpp:2011:42: note: ‘a2_stereo’ was declared here 2011 | OBStereo::BondDirection a1_stereo, a2_stereo; | ^~~~~~~~~ [139/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/getinchi.cpp [140/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/unique.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/ops/unique.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ [141/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/asciiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/asciiformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [142/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:20: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:32: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h: In member function ‘bool OpenBabel::InChIFormat::InchiLess::operator()(const std::string&, const std::string&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:149:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:13: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/inchiformat.h:154:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp: In member function ‘virtual bool OpenBabel::InChIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:194:52: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘AT_NUM’ {aka ‘short int’} [-Wsign-compare] 194 | if ( !(a->GetId() == ct->end || a->GetId() == stereo.neighbor[0] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/inchiformat.cpp:200:54: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘AT_NUM’ {aka ‘short int’} [-Wsign-compare] 200 | if ( !(b->GetId() == ct->begin || b->GetId() == stereo.neighbor[3] ) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ [143/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp: In member function ‘virtual void OpenBabel::ASCIIPainter::DrawText(double, double, const std::string&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/asciipainter.cpp:118:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 118 | for (int i=0; i _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:183:88: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 183 | OBSmartsPattern() : _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) { } | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h: In copy constructor ‘OpenBabel::OBSmartsPattern::OBSmartsPattern(const OpenBabel::OBSmartsPattern&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:186:112: warning: ‘OpenBabel::OBSmartsPattern::_growbond’ is deprecated [-Wdeprecated-declarations] 186 | OBSmartsPattern(const OBSmartsPattern& cp): _pat(nullptr), _buffer(nullptr), LexPtr(nullptr), MainPtr(nullptr) | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/parsmart.h:158:37: note: declared here 158 | OB_DEPRECATED std::vector _growbond; //!< \deprecated (Not used) | ^~~~~~~~~ [147/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnulformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/nulformat.cpp [148/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/depict/commandpainter.cpp [149/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/depict.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp: In member function ‘virtual bool OpenBabel::PainterFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/painterformat.cpp:113:12: warning: unused variable ‘ofs’ [-Wunused-variable] 113 | ostream& ofs = *pConv->GetOutStream(); | ^~~ [150/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/reportformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/reportformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [151/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:25: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp: In member function ‘void OpenBabel::PovrayFormat::OutputHeader(std::ostream&, OpenBabel::OBMol&, std::string)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:173:12: warning: variable ‘time_res’ set but not used [-Wunused-but-set-variable=] 173 | size_t time_res; /* Result of strftime */ | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp: In member function ‘virtual bool OpenBabel::PovrayFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/povrayformat.cpp:807:17: warning: unused variable ‘title’ [-Wunused-variable] 807 | const char* title = pmol->GetTitle(); | ^~~~~ [152/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtextformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF src/formats/CMakeFiles/textformat.dir/textformat.cpp.o.d -o src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/textformat.cpp [153/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsvgformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/depict/depict.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:226:42: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 226 | bool nomore = _nmax && (_objects.size()==_nmax); | ~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:248:18: warning: unused variable ‘n’ [-Wunused-variable] 248 | unsigned int n=0; | ^ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp: In member function ‘virtual bool OpenBabel::SVGFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/svgformat.cpp:273:8: warning: unused variable ‘ret’ [-Wunused-variable] 273 | bool ret = WriteSVG(pConv,_objects); | ^~~ [154/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtitleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/titleformat.cpp [155/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpngformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/pngformat.cpp [156/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dconfabreport_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -MF src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o.d -o src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/align.h:23, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:35: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp: In member function ‘void OpenBabel::ConfabReport::WriteOutput(std::ostream&)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:129:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 129 | for (int i=1; i < binvals.size(); i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/confabreport.cpp:134:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 134 | for (int i=1; i < cumbins.size(); i++) | ~~^~~~~~~~~~~~~~~~ [157/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dabinitformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp: In member function ‘virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/abinitformat.cpp:99:12: warning: variable ‘acell’ set but not used [-Wunused-but-set-variable=] 99 | double acell[3]; // scale of lattice vectors | ^~~~~ [158/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acesformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/acesformat.cpp:22: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [159/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/aoforceformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/aoforceformat.cpp:19: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [160/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp: In member function ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:195:21: warning: ‘pressure’ may be used uninitialized [-Wmaybe-uninitialized] 195 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:12: note: ‘pressure’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:195:21: warning: ‘volume’ may be used uninitialized [-Wmaybe-uninitialized] 195 | pv = volume * pressure * GPA_A3_TO_KCAL_PER_MOL; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:22: note: ‘volume’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obconversion.h:24, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/obmolecformat.h:25, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:16: In function ‘snprintf’, inlined from ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’ at /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:211:17: /usr/include/bits/stdio2.h:68:35: warning: ‘enthalpy’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp: In member function ‘OpenBabel::CASTEPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/castepformat.cpp:94:30: note: ‘enthalpy’ was declared here 94 | double pressure, volume, enthalpy; | ^~~~~~~~ [161/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dadfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:38: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/mol.h:48, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:37: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h: At global scope: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/base.h:219:32: warning: ‘virtual const std::string& OpenBabel::OBGenericData::GetValue() const’ was hidden [-Woverloaded-virtual=] 219 | virtual const std::string &GetValue() const | ^~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:46: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/griddata.h:74:12: note: by ‘double OpenBabel::OBGridData::GetValue(int, int, int) const’ 74 | double GetValue(int i, int j, int k) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp: In member function ‘bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:875:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 875 | while( buf != "Geometry" && ifs ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:875:53: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 875 | while( buf != "Geometry" && ifs ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:888:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 888 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:888:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 888 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:910:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 910 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:910:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 910 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:925:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 925 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:925:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 925 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:940:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 940 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/adfformat.cpp:940:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 940 | while( buf != "Geometry" ) ifs >> buf; cout << buf << endl; | ^~~~ [162/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddaltonformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:147:9: warning: variable ‘atomcount’ set but not used [-Wunused-but-set-variable=] 147 | int atomcount = 0; // for each atom type | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp: In member function ‘virtual bool OpenBabel::DALTONInputFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:311:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 311 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/daltonformat.cpp:331:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 331 | if(atom->GetAtomicNum() != atomtype) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ [163/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrystal09format_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/crystal09format.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/crystal09format.cpp:23: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [164/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/dmolformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/dmolformat.cpp:18: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [165/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhiaimsformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fhiaimsformat.cpp:17: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ [166/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfchkformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:27: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp: In member function ‘virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:596:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 596 | if (alphaorb_found && (numAOrb > alphaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:609:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 609 | if (betaorb_found && (numBOrb > betaorb.size())) | ~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:700:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 700 | if (numAOrb > 0 && alphaorb.size() == numAOrb) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/fchkformat.cpp:704:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 704 | if (numBOrb > 0 && betaorb.size() == numBOrb) { // open shell calculation | ~~~~~~~~~~~~~~~^~~~~~~~~~ [167/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp: In member function ‘virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:589:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 589 | for (unsigned int i=0; i < modeCount; ++i) { | ~~^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:233:9: warning: variable ‘ndummyatoms’ set but not used [-Wunused-but-set-variable=] 233 | int ndummyatoms = 0; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:521:11: warning: ‘lowFreqModesBegin’ may be used uninitialized [-Wmaybe-uninitialized] 521 | if (numFreq < lowFreqModesBegin) // imaginary frequency | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:244:9: note: ‘lowFreqModesBegin’ was declared here 244 | int lowFreqModesBegin; // the number of the first low frequency mode | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:523:11: warning: ‘lowFreqModesEnd’ may be used uninitialized [-Wmaybe-uninitialized] 523 | if (numFreq > lowFreqModesEnd) | ^~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gamessformat.cpp:245:9: note: ‘lowFreqModesEnd’ was declared here 245 | int lowFreqModesEnd; // the number of the last low frequency mode | ^~~~~~~~~~~~~~~ [168/538] /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/include -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/redhat-linux-build/data -I/builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -mtls-dialect=gnu -pthread -DNDEBUG -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp In file included from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/atom.h:35, from /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:21: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h: In member function ‘bool OpenBabel::vector3::operator!=(const OpenBabel::vector3&) const’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:281:29: warning: ‘bool OpenBabel::vector3::operator==(const OpenBabel::vector3&) const’ is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 281 | return ! ( (*this) == other ); | ^~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/include/openbabel/math/vector3.h:274:10: note: declared here 274 | bool operator== ( const vector3& ) const; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp: In function ‘void OpenBabel::add_unique_pairdata_to_mol(OBMol*, std::string, std::string, int)’: /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:284:19: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 284 | if (vs.size() >= start) | ~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/openbabel-3.2.0-build/openbabel-openbabel-3-2-0/src/formats/gaussformat.cpp:287:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 287 | for(i=start+1; (i