Warning: Permanently added '34.205.159.253' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9276810-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.3 PID: 9170 Logging PID: 9171 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 9276810, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '88126a181c3c42e62242736ac688684dc70add64', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/lecris/cmake-ninja/avogadro2-libs', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'avogadro2-libs', 'package_version': '1.99.0-6', 'project_dirname': 'cmake-ninja', 'project_name': 'cmake-ninja', 'project_owner': 'lecris', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/lecris/cmake-ninja/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'lecris/cmake-ninja--lecris', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'lecris', 'tags': [], 'task_id': '9276810-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/lecris/cmake-ninja/avogadro2-libs /var/lib/copr-rpmbuild/workspace/workdir-6evt14n3/avogadro2-libs --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/lecris/cmake-ninja/avogadro2-libs', '/var/lib/copr-rpmbuild/workspace/workdir-6evt14n3/avogadro2-libs', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-6evt14n3/avogadro2-libs'... Running: git checkout 88126a181c3c42e62242736ac688684dc70add64 -- cmd: ['git', 'checkout', '88126a181c3c42e62242736ac688684dc70add64', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6evt14n3/avogadro2-libs rc: 0 stdout: stderr: Note: switching to '88126a181c3c42e62242736ac688684dc70add64'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 88126a1 automatic import of avogadro2-libs Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6evt14n3/avogadro2-libs rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading avogadrolibs-1.99.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o avogadrolibs-1.99.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/lecris/cmake-ninja/avogadro2-libs/avogadrolibs-1.99.0.tar.gz/md5/d8499508e5a67e01bcfec367e3df23e9/avogadrolibs-1.99.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 4744k 100 4744k 0 0 25.4M 0 --:--:-- --:--:-- --:--:-- 25.5M INFO: Reading stdout from command: md5sum avogadrolibs-1.99.0.tar.gz INFO: Downloading avogenerators-1.98.0.tar.gz INFO: Calling: curl -H Pragma: -o avogenerators-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/lecris/cmake-ninja/avogadro2-libs/avogenerators-1.98.0.tar.gz/md5/74b508114f30f469256a19ebc4996f87/avogenerators-1.98.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 15676 100 15676 0 0 871k 0 --:--:-- --:--:-- --:--:-- 900k INFO: Reading stdout from command: md5sum avogenerators-1.98.0.tar.gz INFO: Downloading crystals-1.98.0.tar.gz INFO: Calling: curl -H Pragma: -o crystals-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/lecris/cmake-ninja/avogadro2-libs/crystals-1.98.0.tar.gz/md5/07733a52b8a6572adb353abb6044d6f6/crystals-1.98.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 53.3M 100 53.3M 0 0 26.6M 0 0:00:02 0:00:02 --:--:-- 26.6M INFO: Reading stdout from command: md5sum crystals-1.98.0.tar.gz INFO: Downloading fragments-1.99.0.tar.gz INFO: Calling: curl -H Pragma: -o fragments-1.99.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/lecris/cmake-ninja/avogadro2-libs/fragments-1.99.0.tar.gz/md5/4dd9a11d0e07503cf468ea97c5e94359/fragments-1.99.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2493k 100 2493k 0 0 24.6M 0 --:--:-- --:--:-- --:--:-- 24.5M INFO: Reading stdout from command: md5sum fragments-1.99.0.tar.gz INFO: Downloading molecules-1.98.0.tar.gz INFO: Calling: curl -H Pragma: -o molecules-1.98.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/lecris/cmake-ninja/avogadro2-libs/molecules-1.98.0.tar.gz/md5/789264f5a03f37bf336d2904abe9cd3d/molecules-1.98.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 9720k 100 9720k 0 0 25.5M 0 --:--:-- --:--:-- --:--:-- 25.6M INFO: Reading stdout from command: md5sum molecules-1.98.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6evt14n3/avogadro2-libs/avogadro2-libs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6evt14n3/avogadro2-libs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1752610808.358233 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.3 starting (python version = 3.13.3, NVR = mock-6.3-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6evt14n3/avogadro2-libs/avogadro2-libs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6evt14n3/avogadro2-libs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1752610808.358233 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-6evt14n3/avogadro2-libs/avogadro2-libs.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.3 INFO: Mock Version: 6.3 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1752610808.358233/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-410645ce-e2bc-40d0-88b0-d06f03606c86 INFO: Checking that 582d194583cc2578a9595fe9abd03b7ce45a0eaff0025976561b367ded50a442 image matches host's architecture INFO: Copy content of container 582d194583cc2578a9595fe9abd03b7ce45a0eaff0025976561b367ded50a442 to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1752610808.358233/root INFO: mounting 582d194583cc2578a9595fe9abd03b7ce45a0eaff0025976561b367ded50a442 with podman image mount INFO: image 582d194583cc2578a9595fe9abd03b7ce45a0eaff0025976561b367ded50a442 as /var/lib/containers/storage/overlay/bdd39c645e68e26fe42881bcc41b03aa28c1e4e99dedc0fbc30810063ac75206/merged INFO: umounting image 582d194583cc2578a9595fe9abd03b7ce45a0eaff0025976561b367ded50a442 (/var/lib/containers/storage/overlay/bdd39c645e68e26fe42881bcc41b03aa28c1e4e99dedc0fbc30810063ac75206/merged) with podman image umount INFO: Removing image mock-bootstrap-410645ce-e2bc-40d0-88b0-d06f03606c86 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1752610808.358233/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.91-1.fc43.x86_64 rpm-sequoia-1.9.0-1.fc43.x86_64 dnf5-5.2.15.0-1.fc43.x86_64 dnf5-plugins-5.2.15.0-1.fc43.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 10.3 MiB/s | 3.3 MiB | 00m00s fedora 100% | 35.6 MiB/s | 21.8 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.37-3.fc43 fedora 8.2 MiB bzip2 x86_64 1.0.8-20.fc42 fedora 99.3 KiB coreutils x86_64 9.7-4.fc43 fedora 5.4 MiB cpio x86_64 2.15-2.fc41 fedora 1.1 MiB diffutils x86_64 3.12-2.fc43 fedora 1.6 MiB fedora-release-common noarch 43-0.16 fedora 20.4 KiB findutils x86_64 1:4.10.0-5.fc42 fedora 1.9 MiB gawk x86_64 5.3.2-1.fc43 fedora 1.8 MiB glibc-minimal-langpack x86_64 2.41.9000-20.fc43 fedora 0.0 B grep x86_64 3.12-1.fc43 fedora 1.0 MiB gzip x86_64 1.13-3.fc42 fedora 392.9 KiB info x86_64 7.2-4.fc43 fedora 353.9 KiB patch x86_64 2.8-1.fc43 fedora 226.8 KiB redhat-rpm-config noarch 343-6.fc43 fedora 181.4 KiB rpm-build x86_64 5.99.91-1.fc43 fedora 289.6 KiB sed x86_64 4.9-4.fc42 fedora 857.3 KiB shadow-utils x86_64 2:4.17.4-1.fc43 fedora 4.0 MiB tar x86_64 2:1.35-5.fc42 fedora 3.0 MiB unzip x86_64 6.0-66.fc42 fedora 390.3 KiB util-linux x86_64 2.41.1-10.fc43 fedora 3.5 MiB which x86_64 2.23-2.fc43 fedora 83.5 KiB xz x86_64 1:5.8.1-1.fc43 fedora 1.3 MiB Installing dependencies: add-determinism x86_64 0.6.0-1.fc43 fedora 2.5 MiB alternatives x86_64 1.33-1.fc43 fedora 62.2 KiB ansible-srpm-macros noarch 1-17.1.fc42 fedora 35.7 KiB audit-libs x86_64 4.1.0-1.fc43 fedora 378.8 KiB binutils x86_64 2.44-3.fc43 fedora 25.9 MiB build-reproducibility-srpm-macros noarch 0.6.0-1.fc43 fedora 735.0 B bzip2-libs x86_64 1.0.8-20.fc42 fedora 84.6 KiB ca-certificates noarch 2024.2.69_v8.0.401-5.fc42 fedora 2.6 MiB coreutils-common x86_64 9.7-4.fc43 fedora 11.3 MiB crypto-policies noarch 20250620-1.git9496ef7.fc43 fedora 146.3 KiB curl x86_64 8.15.0~rc3-1.fc43 fedora 473.4 KiB cyrus-sasl-lib x86_64 2.1.28-30.fc42 fedora 2.3 MiB debugedit x86_64 5.2-1.fc43 fedora 197.8 KiB dwz x86_64 0.16-1.fc43 fedora 287.1 KiB ed x86_64 1.21.1-1.fc43 fedora 142.8 KiB efi-srpm-macros noarch 6-3.fc43 fedora 40.1 KiB elfutils x86_64 0.193-2.fc43 fedora 2.9 MiB elfutils-debuginfod-client x86_64 0.193-2.fc43 fedora 83.9 KiB elfutils-default-yama-scope noarch 0.193-2.fc43 fedora 1.8 KiB elfutils-libelf x86_64 0.193-2.fc43 fedora 1.2 MiB elfutils-libs x86_64 0.193-2.fc43 fedora 683.4 KiB fedora-gpg-keys noarch 43-0.2 fedora 129.0 KiB fedora-release noarch 43-0.16 fedora 0.0 B fedora-release-identity-basic noarch 43-0.16 fedora 664.0 B fedora-repos noarch 43-0.2 fedora 4.9 KiB fedora-repos-rawhide noarch 43-0.2 fedora 2.2 KiB file x86_64 5.46-5.fc43 fedora 100.2 KiB file-libs x86_64 5.46-5.fc43 fedora 11.9 MiB filesystem x86_64 3.18-44.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-44.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-22.fc43 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-2.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-14.fc42 fedora 144.0 B gdb-minimal x86_64 16.3-3.fc43 fedora 13.2 MiB gdbm-libs x86_64 1:1.23-9.fc42 fedora 129.9 KiB ghc-srpm-macros noarch 1.9.2-2.fc42 fedora 779.0 B glibc x86_64 2.41.9000-20.fc43 fedora 6.7 MiB glibc-common x86_64 2.41.9000-20.fc43 fedora 1.0 MiB glibc-gconv-extra x86_64 2.41.9000-20.fc43 fedora 7.2 MiB gmp x86_64 1:6.3.0-3.fc43 fedora 819.2 KiB gnat-srpm-macros noarch 6-7.fc42 fedora 1.0 KiB gnupg2 x86_64 2.4.8-2.fc43 fedora 6.5 MiB gnupg2-dirmngr x86_64 2.4.8-2.fc43 fedora 618.4 KiB gnupg2-gpg-agent x86_64 2.4.8-2.fc43 fedora 671.4 KiB gnupg2-gpgconf x86_64 2.4.8-2.fc43 fedora 250.0 KiB gnupg2-keyboxd x86_64 2.4.8-2.fc43 fedora 201.4 KiB gnupg2-verify x86_64 2.4.8-2.fc43 fedora 348.5 KiB gnutls x86_64 3.8.10-1.fc43 fedora 3.8 MiB go-srpm-macros noarch 3.6.0-7.fc43 fedora 60.8 KiB gpgverify noarch 2.2-1.fc43 fedora 8.7 KiB ima-evm-utils-libs x86_64 1.6.2-5.fc43 fedora 60.7 KiB jansson x86_64 2.14-2.fc42 fedora 93.1 KiB java-srpm-macros noarch 1-6.fc43 fedora 870.0 B json-c x86_64 0.18-4.fc43 fedora 82.7 KiB kernel-srpm-macros noarch 1.0-25.fc42 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-5.fc42 fedora 58.3 KiB krb5-libs x86_64 1.21.3-6.fc43 fedora 2.3 MiB libacl x86_64 2.3.2-3.fc42 fedora 38.3 KiB libarchive x86_64 3.8.1-1.fc43 fedora 951.1 KiB libassuan x86_64 2.5.7-3.fc42 fedora 167.8 KiB libattr x86_64 2.5.2-5.fc42 fedora 27.1 KiB libblkid x86_64 2.41.1-10.fc43 fedora 262.4 KiB libbrotli x86_64 1.1.0-7.fc43 fedora 833.3 KiB libcap x86_64 2.76-1.fc43 fedora 209.2 KiB libcap-ng x86_64 0.8.5-5.fc43 fedora 68.9 KiB libcom_err x86_64 1.47.3-1.fc43 fedora 63.1 KiB libcurl x86_64 8.15.0~rc3-1.fc43 fedora 903.2 KiB libeconf x86_64 0.7.9-1.fc43 fedora 64.9 KiB libevent x86_64 2.1.12-15.fc42 fedora 903.1 KiB libfdisk x86_64 2.41.1-10.fc43 fedora 380.4 KiB libffi x86_64 3.5.1-1.fc43 fedora 83.6 KiB libfsverity x86_64 1.6-2.fc42 fedora 32.5 KiB libgcc x86_64 15.1.1-2.fc43 fedora 266.6 KiB libgcrypt x86_64 1.11.1-1.fc43 fedora 1.6 MiB libgomp x86_64 15.1.1-2.fc43 fedora 539.1 KiB libgpg-error x86_64 1.55-1.fc43 fedora 915.3 KiB libidn2 x86_64 2.3.8-1.fc43 fedora 552.5 KiB libksba x86_64 1.6.7-3.fc42 fedora 402.5 KiB liblastlog2 x86_64 2.41.1-10.fc43 fedora 33.9 KiB libmount x86_64 2.41.1-10.fc43 fedora 372.7 KiB libnghttp2 x86_64 1.66.0-1.fc43 fedora 162.2 KiB libpkgconf x86_64 2.3.0-2.fc42 fedora 78.1 KiB libpsl x86_64 0.21.5-5.fc42 fedora 76.4 KiB libselinux x86_64 3.9-0.rc2.1.fc43 fedora 193.1 KiB libsemanage x86_64 3.9-0.rc2.1.fc43 fedora 308.4 KiB libsepol x86_64 3.9-0.rc2.1.fc43 fedora 822.0 KiB libsmartcols x86_64 2.41.1-10.fc43 fedora 180.5 KiB libssh x86_64 0.11.2-1.fc43 fedora 566.7 KiB libssh-config noarch 0.11.2-1.fc43 fedora 277.0 B libstdc++ x86_64 15.1.1-2.fc43 fedora 2.8 MiB libtasn1 x86_64 4.20.0-1.fc43 fedora 176.3 KiB libtool-ltdl x86_64 2.5.4-5.fc43 fedora 70.1 KiB libunistring x86_64 1.1-9.fc42 fedora 1.7 MiB libusb1 x86_64 1.0.28-2.fc43 fedora 171.0 KiB libuuid x86_64 2.41.1-10.fc43 fedora 37.4 KiB libverto x86_64 0.3.2-10.fc42 fedora 25.4 KiB libxcrypt x86_64 4.4.38-7.fc43 fedora 284.5 KiB libxml2 x86_64 2.12.10-2.fc43 fedora 1.7 MiB libzstd x86_64 1.5.7-1.fc43 fedora 807.8 KiB lua-libs x86_64 5.4.8-1.fc43 fedora 280.8 KiB lua-srpm-macros noarch 1-15.fc42 fedora 1.3 KiB lz4-libs x86_64 1.10.0-2.fc42 fedora 157.4 KiB mpfr x86_64 4.2.2-1.fc43 fedora 828.8 KiB ncurses-base noarch 6.5-6.20250614.fc43 fedora 328.1 KiB ncurses-libs x86_64 6.5-6.20250614.fc43 fedora 946.3 KiB nettle x86_64 3.10.1-1.fc43 fedora 790.5 KiB npth x86_64 1.8-2.fc42 fedora 49.6 KiB ocaml-srpm-macros noarch 10-4.fc42 fedora 1.9 KiB openblas-srpm-macros noarch 2-19.fc42 fedora 112.0 B openldap x86_64 2.6.10-2.fc43 fedora 655.8 KiB openssl-libs x86_64 1:3.5.1-1.fc43 fedora 8.9 MiB p11-kit x86_64 0.25.5-8.fc43 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-8.fc43 fedora 395.5 KiB package-notes-srpm-macros noarch 0.5-13.fc42 fedora 1.6 KiB pam-libs x86_64 1.7.1-1.fc43 fedora 126.8 KiB pcre2 x86_64 10.45-1.fc43 fedora 697.7 KiB pcre2-syntax noarch 10.45-1.fc43 fedora 273.9 KiB perl-srpm-macros noarch 1-59.fc43 fedora 861.0 B pkgconf x86_64 2.3.0-2.fc42 fedora 88.5 KiB pkgconf-m4 noarch 2.3.0-2.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-2.fc42 fedora 989.0 B popt x86_64 1.19-8.fc42 fedora 132.8 KiB publicsuffix-list-dafsa noarch 20250616-1.fc43 fedora 69.1 KiB pyproject-srpm-macros noarch 1.18.3-1.fc43 fedora 1.9 KiB python-srpm-macros noarch 3.14-2.fc43 fedora 51.5 KiB qt5-srpm-macros noarch 5.15.17-1.fc43 fedora 500.0 B qt6-srpm-macros noarch 6.9.1-1.fc43 fedora 464.0 B readline x86_64 8.2-13.fc43 fedora 485.0 KiB rpm x86_64 5.99.91-1.fc43 fedora 3.0 MiB rpm-build-libs x86_64 5.99.91-1.fc43 fedora 268.4 KiB rpm-libs x86_64 5.99.91-1.fc43 fedora 933.7 KiB rpm-sequoia x86_64 1.9.0-1.fc43 fedora 2.5 MiB rpm-sign-libs x86_64 5.99.91-1.fc43 fedora 39.7 KiB rust-srpm-macros noarch 26.3-4.fc42 fedora 4.8 KiB setup noarch 2.15.0-25.fc43 fedora 725.0 KiB sqlite-libs x86_64 3.50.2-1.fc43 fedora 1.5 MiB systemd-libs x86_64 257.7-1.fc43 fedora 2.2 MiB systemd-standalone-sysusers x86_64 257.7-1.fc43 fedora 277.3 KiB tpm2-tss x86_64 4.1.3-7.fc43 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0.4.1-1.fc43 fedora 8.2 KiB util-linux-core x86_64 2.41.1-10.fc43 fedora 1.5 MiB xxhash-libs x86_64 0.8.3-2.fc42 fedora 90.2 KiB xz-libs x86_64 1:5.8.1-1.fc43 fedora 217.8 KiB zig-srpm-macros noarch 1-4.fc42 fedora 1.1 KiB zip x86_64 3.0-43.fc42 fedora 698.5 KiB zlib-ng-compat x86_64 2.2.4-2.fc43 copr_base 137.6 KiB zstd x86_64 1.5.7-1.fc43 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 169 packages Total size of inbound packages is 59 MiB. Need to download 59 MiB. After this operation, 197 MiB extra will be used (install 197 MiB, remove 0 B). [ 1/169] bzip2-0:1.0.8-20.fc42.x86_64 100% | 4.6 MiB/s | 52.1 KiB | 00m00s [ 2/169] cpio-0:2.15-2.fc41.x86_64 100% | 71.2 MiB/s | 291.8 KiB | 00m00s [ 3/169] bash-0:5.2.37-3.fc43.x86_64 100% | 100.7 MiB/s | 1.8 MiB | 00m00s [ 4/169] coreutils-0:9.7-4.fc43.x86_64 100% | 57.0 MiB/s | 1.1 MiB | 00m00s [ 5/169] diffutils-0:3.12-2.fc43.x86_6 100% | 76.7 MiB/s | 392.7 KiB | 00m00s [ 6/169] fedora-release-common-0:43-0. 100% | 8.4 MiB/s | 25.9 KiB | 00m00s [ 7/169] glibc-minimal-langpack-0:2.41 100% | 31.9 MiB/s | 32.6 KiB | 00m00s [ 8/169] grep-0:3.12-1.fc43.x86_64 100% | 146.2 MiB/s | 299.5 KiB | 00m00s [ 9/169] gzip-0:1.13-3.fc42.x86_64 100% | 55.5 MiB/s | 170.4 KiB | 00m00s [ 10/169] findutils-1:4.10.0-5.fc42.x86 100% | 67.3 MiB/s | 551.5 KiB | 00m00s [ 11/169] info-0:7.2-4.fc43.x86_64 100% | 29.7 MiB/s | 182.8 KiB | 00m00s [ 12/169] patch-0:2.8-1.fc43.x86_64 100% | 22.2 MiB/s | 113.7 KiB | 00m00s [ 13/169] redhat-rpm-config-0:343-6.fc4 100% | 9.7 MiB/s | 79.4 KiB | 00m00s [ 14/169] sed-0:4.9-4.fc42.x86_64 100% | 51.6 MiB/s | 317.3 KiB | 00m00s [ 15/169] shadow-utils-2:4.17.4-1.fc43. 100% | 165.4 MiB/s | 1.3 MiB | 00m00s [ 16/169] tar-2:1.35-5.fc42.x86_64 100% | 120.3 MiB/s | 862.5 KiB | 00m00s [ 17/169] unzip-0:6.0-66.fc42.x86_64 100% | 30.0 MiB/s | 184.6 KiB | 00m00s [ 18/169] which-0:2.23-2.fc43.x86_64 100% | 8.2 MiB/s | 41.8 KiB | 00m00s [ 19/169] xz-1:5.8.1-1.fc43.x86_64 100% | 93.2 MiB/s | 572.5 KiB | 00m00s [ 20/169] gawk-0:5.3.2-1.fc43.x86_64 100% | 125.0 MiB/s | 1.1 MiB | 00m00s [ 21/169] rpm-build-0:5.99.91-1.fc43.x8 100% | 22.2 MiB/s | 136.3 KiB | 00m00s [ 22/169] util-linux-0:2.41.1-10.fc43.x 100% | 149.0 MiB/s | 1.2 MiB | 00m00s [ 23/169] filesystem-0:3.18-44.fc43.x86 100% | 121.2 MiB/s | 1.3 MiB | 00m00s [ 24/169] ncurses-libs-0:6.5-6.20250614 100% | 46.5 MiB/s | 333.1 KiB | 00m00s [ 25/169] glibc-0:2.41.9000-20.fc43.x86 100% | 137.0 MiB/s | 2.2 MiB | 00m00s [ 26/169] bzip2-libs-0:1.0.8-20.fc42.x8 100% | 8.5 MiB/s | 43.6 KiB | 00m00s [ 27/169] libacl-0:2.3.2-3.fc42.x86_64 100% | 11.2 MiB/s | 23.0 KiB | 00m00s [ 28/169] gmp-1:6.3.0-3.fc43.x86_64 100% | 78.7 MiB/s | 322.2 KiB | 00m00s [ 29/169] libattr-0:2.5.2-5.fc42.x86_64 100% | 4.2 MiB/s | 17.1 KiB | 00m00s [ 30/169] libcap-0:2.76-1.fc43.x86_64 100% | 21.2 MiB/s | 86.9 KiB | 00m00s [ 31/169] coreutils-common-0:9.7-4.fc43 100% | 131.3 MiB/s | 2.1 MiB | 00m00s [ 32/169] libselinux-0:3.9-0.rc2.1.fc43 100% | 19.0 MiB/s | 97.1 KiB | 00m00s [ 33/169] fedora-repos-0:43-0.2.noarch 100% | 1.1 MiB/s | 9.2 KiB | 00m00s [ 34/169] systemd-libs-0:257.7-1.fc43.x 100% | 70.1 MiB/s | 789.7 KiB | 00m00s [ 35/169] glibc-common-0:2.41.9000-20.f 100% | 52.0 MiB/s | 319.4 KiB | 00m00s [ 36/169] pcre2-0:10.45-1.fc43.x86_64 100% | 51.3 MiB/s | 262.8 KiB | 00m00s [ 37/169] openssl-libs-1:3.5.1-1.fc43.x 100% | 109.0 MiB/s | 2.6 MiB | 00m00s [ 38/169] ed-0:1.21.1-1.fc43.x86_64 100% | 16.0 MiB/s | 82.2 KiB | 00m00s [ 39/169] ansible-srpm-macros-0:1-17.1. 100% | 5.0 MiB/s | 20.3 KiB | 00m00s [ 40/169] build-reproducibility-srpm-ma 100% | 2.9 MiB/s | 11.7 KiB | 00m00s [ 41/169] efi-srpm-macros-0:6-3.fc43.no 100% | 5.5 MiB/s | 22.5 KiB | 00m00s [ 42/169] dwz-0:0.16-1.fc43.x86_64 100% | 26.5 MiB/s | 135.5 KiB | 00m00s [ 43/169] file-0:5.46-5.fc43.x86_64 100% | 15.9 MiB/s | 48.8 KiB | 00m00s [ 44/169] filesystem-srpm-macros-0:3.18 100% | 8.5 MiB/s | 26.0 KiB | 00m00s [ 45/169] fonts-srpm-macros-1:2.0.5-22. 100% | 13.3 MiB/s | 27.2 KiB | 00m00s [ 46/169] forge-srpm-macros-0:0.4.0-2.f 100% | 9.7 MiB/s | 19.9 KiB | 00m00s [ 47/169] fpc-srpm-macros-0:1.3-14.fc42 100% | 3.9 MiB/s | 8.0 KiB | 00m00s [ 48/169] ghc-srpm-macros-0:1.9.2-2.fc4 100% | 8.9 MiB/s | 9.2 KiB | 00m00s [ 49/169] gnat-srpm-macros-0:6-7.fc42.n 100% | 4.2 MiB/s | 8.6 KiB | 00m00s [ 50/169] java-srpm-macros-0:1-6.fc43.n 100% | 7.7 MiB/s | 7.9 KiB | 00m00s [ 51/169] go-srpm-macros-0:3.6.0-7.fc43 100% | 13.5 MiB/s | 27.6 KiB | 00m00s [ 52/169] kernel-srpm-macros-0:1.0-25.f 100% | 9.6 MiB/s | 9.9 KiB | 00m00s [ 53/169] lua-srpm-macros-0:1-15.fc42.n 100% | 8.7 MiB/s | 8.9 KiB | 00m00s [ 54/169] ocaml-srpm-macros-0:10-4.fc42 100% | 9.0 MiB/s | 9.2 KiB | 00m00s [ 55/169] openblas-srpm-macros-0:2-19.f 100% | 7.6 MiB/s | 7.8 KiB | 00m00s [ 56/169] package-notes-srpm-macros-0:0 100% | 9.0 MiB/s | 9.3 KiB | 00m00s [ 57/169] perl-srpm-macros-0:1-59.fc43. 100% | 8.3 MiB/s | 8.5 KiB | 00m00s [ 58/169] pyproject-srpm-macros-0:1.18. 100% | 6.5 MiB/s | 13.3 KiB | 00m00s [ 59/169] python-srpm-macros-0:3.14-2.f 100% | 11.3 MiB/s | 23.2 KiB | 00m00s [ 60/169] rust-srpm-macros-0:26.3-4.fc4 100% | 5.7 MiB/s | 11.7 KiB | 00m00s [ 61/169] tree-sitter-srpm-macros-0:0.4 100% | 12.7 MiB/s | 13.0 KiB | 00m00s [ 62/169] zig-srpm-macros-0:1-4.fc42.no 100% | 8.1 MiB/s | 8.2 KiB | 00m00s [ 63/169] audit-libs-0:4.1.0-1.fc43.x86 100% | 135.0 MiB/s | 138.3 KiB | 00m00s [ 64/169] zip-0:3.0-43.fc42.x86_64 100% | 85.8 MiB/s | 263.5 KiB | 00m00s [ 65/169] libsemanage-0:3.9-0.rc2.1.fc4 100% | 30.1 MiB/s | 123.3 KiB | 00m00s [ 66/169] libxcrypt-0:4.4.38-7.fc43.x86 100% | 41.4 MiB/s | 127.2 KiB | 00m00s [ 67/169] pam-libs-0:1.7.1-1.fc43.x86_6 100% | 14.0 MiB/s | 57.5 KiB | 00m00s [ 68/169] setup-0:2.15.0-25.fc43.noarch 100% | 76.9 MiB/s | 157.6 KiB | 00m00s [ 69/169] xz-libs-1:5.8.1-1.fc43.x86_64 100% | 55.2 MiB/s | 113.0 KiB | 00m00s [ 70/169] mpfr-0:4.2.2-1.fc43.x86_64 100% | 84.6 MiB/s | 346.7 KiB | 00m00s [ 71/169] readline-0:8.2-13.fc43.x86_64 100% | 69.3 MiB/s | 212.9 KiB | 00m00s [ 72/169] debugedit-0:5.2-1.fc43.x86_64 100% | 15.7 MiB/s | 80.6 KiB | 00m00s [ 73/169] elfutils-libelf-0:0.193-2.fc4 100% | 67.7 MiB/s | 207.9 KiB | 00m00s [ 74/169] elfutils-0:0.193-2.fc43.x86_6 100% | 93.0 MiB/s | 571.5 KiB | 00m00s [ 75/169] libarchive-0:3.8.1-1.fc43.x86 100% | 102.9 MiB/s | 421.4 KiB | 00m00s [ 76/169] libgcc-0:15.1.1-2.fc43.x86_64 100% | 41.5 MiB/s | 127.5 KiB | 00m00s [ 77/169] popt-0:1.19-8.fc42.x86_64 100% | 21.5 MiB/s | 66.0 KiB | 00m00s [ 78/169] libstdc++-0:15.1.1-2.fc43.x86 100% | 178.3 MiB/s | 912.8 KiB 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elfutils-default-yama-scope-0 100% | 2.5 MiB/s | 12.6 KiB | 00m00s [105/169] sqlite-libs-0:3.50.2-1.fc43.x 100% | 74.3 MiB/s | 761.3 KiB | 00m00s [106/169] rpm-libs-0:5.99.91-1.fc43.x86 100% | 78.1 MiB/s | 399.9 KiB | 00m00s [107/169] lua-libs-0:5.4.8-1.fc43.x86_6 100% | 32.2 MiB/s | 131.9 KiB | 00m00s [108/169] rpm-sign-libs-0:5.99.91-1.fc4 100% | 27.5 MiB/s | 28.2 KiB | 00m00s [109/169] rpm-build-libs-0:5.99.91-1.fc 100% | 41.5 MiB/s | 127.5 KiB | 00m00s [110/169] rpm-sequoia-0:1.9.0-1.fc43.x8 100% | 130.1 MiB/s | 932.9 KiB | 00m00s [111/169] libgomp-0:15.1.1-2.fc43.x86_6 100% | 59.4 MiB/s | 365.2 KiB | 00m00s [112/169] libfsverity-0:1.6-2.fc42.x86_ 100% | 6.1 MiB/s | 18.8 KiB | 00m00s [113/169] ima-evm-utils-libs-0:1.6.2-5. 100% | 4.8 MiB/s | 29.5 KiB | 00m00s [114/169] gnupg2-0:2.4.8-2.fc43.x86_64 100% | 117.5 MiB/s | 1.6 MiB | 00m00s [115/169] gpgverify-0:2.2-1.fc43.noarch 100% | 1.8 MiB/s | 10.8 KiB | 00m00s [116/169] gnupg2-dirmngr-0:2.4.8-2.fc43 100% | 24.4 MiB/s | 274.8 KiB | 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zlib-ng-compat-0:2.2.4-2.fc43 100% | 8.6 MiB/s | 79.7 KiB | 00m00s [143/169] alternatives-0:1.33-1.fc43.x8 100% | 7.9 MiB/s | 40.5 KiB | 00m00s [144/169] jansson-0:2.14-2.fc42.x86_64 100% | 11.2 MiB/s | 45.7 KiB | 00m00s [145/169] pkgconf-pkg-config-0:2.3.0-2. 100% | 3.2 MiB/s | 9.9 KiB | 00m00s [146/169] pkgconf-0:2.3.0-2.fc42.x86_64 100% | 11.0 MiB/s | 44.9 KiB | 00m00s [147/169] pkgconf-m4-0:2.3.0-2.fc42.noa 100% | 4.6 MiB/s | 14.2 KiB | 00m00s [148/169] libpkgconf-0:2.3.0-2.fc42.x86 100% | 9.4 MiB/s | 38.4 KiB | 00m00s [149/169] qt5-srpm-macros-0:5.15.17-1.f 100% | 1.4 MiB/s | 8.7 KiB | 00m00s [150/169] qt6-srpm-macros-0:6.9.1-1.fc4 100% | 1.5 MiB/s | 9.4 KiB | 00m00s [151/169] libxml2-0:2.12.10-2.fc43.x86_ 100% | 112.5 MiB/s | 691.3 KiB | 00m00s [152/169] p11-kit-trust-0:0.25.5-8.fc43 100% | 25.9 MiB/s | 132.4 KiB | 00m00s [153/169] binutils-0:2.44-3.fc43.x86_64 100% | 170.9 MiB/s | 5.8 MiB | 00m00s [154/169] fedora-release-0:43-0.16.noar 100% | 2.1 MiB/s | 14.9 KiB | 00m00s [155/169] systemd-standalone-sysusers-0 100% | 14.6 MiB/s | 134.8 KiB | 00m00s [156/169] xxhash-libs-0:0.8.3-2.fc42.x8 100% | 7.6 MiB/s | 39.1 KiB | 00m00s [157/169] fedora-release-identity-basic 100% | 5.1 MiB/s | 15.6 KiB | 00m00s [158/169] libcurl-0:8.15.0~rc3-1.fc43.x 100% | 98.8 MiB/s | 404.5 KiB | 00m00s [159/169] krb5-libs-0:1.21.3-6.fc43.x86 100% | 92.7 MiB/s | 759.5 KiB | 00m00s [160/169] libnghttp2-0:1.66.0-1.fc43.x8 100% | 14.2 MiB/s | 72.7 KiB | 00m00s [161/169] libpsl-0:0.21.5-5.fc42.x86_64 100% | 20.8 MiB/s | 64.0 KiB | 00m00s [162/169] gdb-minimal-0:16.3-3.fc43.x86 100% | 191.8 MiB/s | 4.4 MiB | 00m00s [163/169] libssh-0:0.11.2-1.fc43.x86_64 100% | 28.4 MiB/s | 232.8 KiB | 00m00s [164/169] keyutils-libs-0:1.6.3-5.fc42. 100% | 5.1 MiB/s | 31.5 KiB | 00m00s [165/169] libverto-0:0.3.2-10.fc42.x86_ 100% | 10.2 MiB/s | 20.8 KiB | 00m00s [166/169] publicsuffix-list-dafsa-0:202 100% | 28.9 MiB/s | 59.2 KiB | 00m00s [167/169] libcom_err-0:1.47.3-1.fc43.x8 100% | 8.7 MiB/s | 26.8 KiB | 00m00s [168/169] libssh-config-0:0.11.2-1.fc43 100% | 2.2 MiB/s | 8.9 KiB | 00m00s [169/169] libbrotli-0:1.1.0-7.fc43.x86_ 100% | 41.4 MiB/s | 339.1 KiB | 00m00s -------------------------------------------------------------------------------- [169/169] Total 100% | 171.2 MiB/s | 58.7 MiB | 00m00s Running transaction Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. [ 1/171] Verify package files 100% | 828.0 B/s | 169.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-44.fc43.x86_64 >>> Finished %pretrans scriptlet: filesystem-0:3.18-44.fc43.x86_64 >>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1752610808.358233/root/var/cache/d [ 2/171] Prepare transaction 100% | 4.5 KiB/s | 169.0 B | 00m00s [ 3/171] Installing libgcc-0:15.1.1-2. 100% | 262.0 MiB/s | 268.3 KiB | 00m00s [ 4/171] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/171] Installing publicsuffix-list- 100% | 0.0 B/s | 69.8 KiB | 00m00s [ 6/171] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 7/171] Installing fedora-gpg-keys-0: 100% | 57.3 MiB/s | 175.9 KiB | 00m00s [ 8/171] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/171] Installing fedora-repos-0:43- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/171] Installing fedora-release-com 100% | 24.1 MiB/s | 24.7 KiB | 00m00s [ 11/171] Installing fedora-release-0:4 100% | 17.3 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-25.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-25.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 12/171] Installing setup-0:2.15.0-25. 100% | 54.9 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/171] Installing filesystem-0:3.18- 100% | 3.1 MiB/s | 212.5 KiB | 00m00s [ 14/171] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [ 15/171] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 16/171] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 17/171] Installing pcre2-syntax-0:10. 100% | 269.9 MiB/s | 276.4 KiB | 00m00s [ 18/171] Installing ncurses-base-0:6.5 100% | 86.3 MiB/s | 353.5 KiB | 00m00s [ 19/171] Installing bash-0:5.2.37-3.fc 100% | 292.2 MiB/s | 8.2 MiB | 00m00s [ 20/171] Installing glibc-common-0:2.4 100% | 68.0 MiB/s | 1.0 MiB | 00m00s [ 21/171] Installing glibc-gconv-extra- 100% | 304.6 MiB/s | 7.3 MiB | 00m00s [ 22/171] Installing glibc-0:2.41.9000- 100% | 196.6 MiB/s | 6.7 MiB | 00m00s [ 23/171] Installing ncurses-libs-0:6.5 100% | 310.2 MiB/s | 952.9 KiB | 00m00s [ 24/171] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 25/171] Installing zlib-ng-compat-0:2 100% | 135.2 MiB/s | 138.4 KiB | 00m00s [ 26/171] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 85.7 KiB | 00m00s [ 27/171] Installing libgpg-error-0:1.5 100% | 69.2 MiB/s | 921.1 KiB | 00m00s [ 28/171] Installing libstdc++-0:15.1.1 100% | 405.2 MiB/s | 2.8 MiB | 00m00s [ 29/171] Installing xz-libs-1:5.8.1-1. 100% | 213.8 MiB/s | 218.9 KiB | 00m00s [ 30/171] Installing libassuan-0:2.5.7- 100% | 165.6 MiB/s | 169.6 KiB | 00m00s [ 31/171] Installing libgcrypt-0:1.11.1 100% | 393.8 MiB/s | 1.6 MiB | 00m00s [ 32/171] Installing readline-0:8.2-13. 100% | 475.7 MiB/s | 487.1 KiB | 00m00s [ 33/171] Installing gmp-1:6.3.0-3.fc43 100% | 401.1 MiB/s | 821.5 KiB | 00m00s [ 34/171] Installing libuuid-0:2.41.1-1 100% | 0.0 B/s | 38.5 KiB | 00m00s [ 35/171] Installing popt-0:1.19-8.fc42 100% | 68.1 MiB/s | 139.4 KiB | 00m00s [ 36/171] Installing npth-0:1.8-2.fc42. 100% | 0.0 B/s | 50.7 KiB | 00m00s [ 37/171] Installing libblkid-0:2.41.1- 100% | 257.2 MiB/s | 263.4 KiB | 00m00s [ 38/171] Installing libxcrypt-0:4.4.38 100% | 280.4 MiB/s | 287.2 KiB | 00m00s [ 39/171] Installing libzstd-0:1.5.7-1. 100% | 395.1 MiB/s | 809.1 KiB | 00m00s [ 40/171] Installing elfutils-libelf-0: 100% | 388.8 MiB/s | 1.2 MiB | 00m00s [ 41/171] Installing sqlite-libs-0:3.50 100% | 379.1 MiB/s | 1.5 MiB | 00m00s [ 42/171] Installing gnupg2-gpgconf-0:2 100% | 22.4 MiB/s | 252.1 KiB | 00m00s [ 43/171] Installing libattr-0:2.5.2-5. 100% | 0.0 B/s | 28.1 KiB | 00m00s [ 44/171] Installing libacl-0:2.3.2-3.f 100% | 0.0 B/s | 39.2 KiB | 00m00s [ 45/171] Installing libtasn1-0:4.20.0- 100% | 173.9 MiB/s | 178.1 KiB | 00m00s [ 46/171] Installing libunistring-0:1.1 100% | 431.7 MiB/s | 1.7 MiB | 00m00s [ 47/171] Installing libidn2-0:2.3.8-1. 100% | 68.2 MiB/s | 558.7 KiB | 00m00s [ 48/171] Installing crypto-policies-0: 100% | 41.8 MiB/s | 171.3 KiB | 00m00s [ 49/171] Installing dwz-0:0.16-1.fc43. 100% | 21.7 MiB/s | 288.5 KiB | 00m00s [ 50/171] Installing mpfr-0:4.2.2-1.fc4 100% | 270.3 MiB/s | 830.4 KiB | 00m00s [ 51/171] Installing gawk-0:5.3.2-1.fc4 100% | 113.5 MiB/s | 1.8 MiB | 00m00s [ 52/171] Installing libksba-0:1.6.7-3. 100% | 395.6 MiB/s | 405.1 KiB | 00m00s [ 53/171] Installing unzip-0:6.0-66.fc4 100% | 32.0 MiB/s | 393.8 KiB | 00m00s [ 54/171] Installing file-libs-0:5.46-5 100% | 697.5 MiB/s | 11.9 MiB | 00m00s [ 55/171] Installing file-0:5.46-5.fc43 100% | 9.0 MiB/s | 101.7 KiB | 00m00s [ 56/171] Installing pcre2-0:10.45-1.fc 100% | 341.4 MiB/s | 699.1 KiB | 00m00s [ 57/171] Installing grep-0:3.12-1.fc43 100% | 71.6 MiB/s | 1.0 MiB | 00m00s [ 58/171] Installing xz-1:5.8.1-1.fc43. 100% | 88.8 MiB/s | 1.3 MiB | 00m00s [ 59/171] Installing libcap-ng-0:0.8.5- 100% | 69.2 MiB/s | 70.8 KiB | 00m00s [ 60/171] Installing audit-libs-0:4.1.0 100% | 372.6 MiB/s | 381.5 KiB | 00m00s [ 61/171] Installing libsmartcols-0:2.4 100% | 177.4 MiB/s | 181.6 KiB | 00m00s [ 62/171] Installing libsepol-0:3.9-0.r 100% | 401.8 MiB/s | 823.0 KiB | 00m00s [ 63/171] Installing libselinux-0:3.9-0 100% | 189.8 MiB/s | 194.4 KiB | 00m00s [ 64/171] Installing findutils-1:4.10.0 100% | 117.1 MiB/s | 1.9 MiB | 00m00s [ 65/171] Installing sed-0:4.9-4.fc42.x 100% | 60.4 MiB/s | 865.5 KiB | 00m00s [ 66/171] Installing libmount-0:2.41.1- 100% | 365.0 MiB/s | 373.8 KiB | 00m00s [ 67/171] Installing lz4-libs-0:1.10.0- 100% | 154.7 MiB/s | 158.5 KiB | 00m00s [ 68/171] Installing lua-libs-0:5.4.8-1 100% | 275.4 MiB/s | 282.0 KiB | 00m00s [ 69/171] Installing libffi-0:3.5.1-1.f 100% | 83.0 MiB/s | 85.0 KiB | 00m00s [ 70/171] Installing p11-kit-0:0.25.5-8 100% | 121.4 MiB/s | 2.2 MiB | 00m00s [ 71/171] Installing json-c-0:0.18-4.fc 100% | 82.0 MiB/s | 84.0 KiB | 00m00s [ 72/171] Installing libeconf-0:0.7.9-1 100% | 65.0 MiB/s | 66.5 KiB | 00m00s [ 73/171] Installing pam-libs-0:1.7.1-1 100% | 126.2 MiB/s | 129.2 KiB | 00m00s [ 74/171] Installing libcap-0:2.76-1.fc 100% | 17.4 MiB/s | 214.3 KiB | 00m00s [ 75/171] Installing systemd-libs-0:257 100% | 372.0 MiB/s | 2.2 MiB | 00m00s [ 76/171] Installing alternatives-0:1.3 100% | 5.7 MiB/s | 63.8 KiB | 00m00s [ 77/171] Installing p11-kit-trust-0:0. 100% | 20.4 MiB/s | 397.1 KiB | 00m00s [ 78/171] Installing util-linux-core-0: 100% | 87.1 MiB/s | 1.5 MiB | 00m00s [ 79/171] Installing libusb1-0:1.0.28-2 100% | 168.7 MiB/s | 172.7 KiB | 00m00s [ 80/171] Installing systemd-standalone 100% | 24.7 MiB/s | 277.8 KiB | 00m00s [ 81/171] Installing zstd-0:1.5.7-1.fc4 100% | 122.1 MiB/s | 1.7 MiB | 00m00s [ 82/171] Installing tar-2:1.35-5.fc42. 100% | 164.6 MiB/s | 3.0 MiB | 00m00s [ 83/171] Installing libsemanage-0:3.9- 100% | 302.9 MiB/s | 310.2 KiB | 00m00s [ 84/171] Installing zip-0:3.0-43.fc42. 100% | 57.2 MiB/s | 702.4 KiB | 00m00s [ 85/171] Installing gnupg2-keyboxd-0:2 100% | 33.0 MiB/s | 202.7 KiB | 00m00s [ 86/171] Installing libpsl-0:0.21.5-5. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [ 87/171] Installing liblastlog2-0:2.41 100% | 35.1 MiB/s | 35.9 KiB | 00m00s [ 88/171] Installing libfdisk-0:2.41.1- 100% | 372.6 MiB/s | 381.5 KiB | 00m00s [ 89/171] Installing gnupg2-verify-0:2. 100% | 26.3 MiB/s | 349.9 KiB | 00m00s [ 90/171] Installing nettle-0:3.10.1-1. 100% | 387.5 MiB/s | 793.6 KiB | 00m00s [ 91/171] Installing gnutls-0:3.8.10-1. 100% | 426.6 MiB/s | 3.8 MiB | 00m00s [ 92/171] Installing libxml2-0:2.12.10- 100% | 113.6 MiB/s | 1.7 MiB | 00m00s [ 93/171] Installing bzip2-0:1.0.8-20.f 100% | 9.2 MiB/s | 103.8 KiB | 00m00s [ 94/171] Installing add-determinism-0: 100% | 154.1 MiB/s | 2.5 MiB | 00m00s [ 95/171] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 96/171] Installing cpio-0:2.15-2.fc41 100% | 78.6 MiB/s | 1.1 MiB | 00m00s [ 97/171] Installing diffutils-0:3.12-2 100% | 104.1 MiB/s | 1.6 MiB | 00m00s [ 98/171] Installing ed-0:1.21.1-1.fc43 100% | 12.9 MiB/s | 145.1 KiB | 00m00s [ 99/171] Installing patch-0:2.8-1.fc43 100% | 18.6 MiB/s | 228.3 KiB | 00m00s [100/171] Installing libgomp-0:15.1.1-2 100% | 263.9 MiB/s | 540.5 KiB | 00m00s [101/171] Installing libtool-ltdl-0:2.5 100% | 0.0 B/s | 71.2 KiB | 00m00s [102/171] Installing gdbm-libs-1:1.23-9 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [103/171] Installing cyrus-sasl-lib-0:2 100% | 144.0 MiB/s | 2.3 MiB | 00m00s [104/171] Installing jansson-0:2.14-2.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [105/171] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 79.2 KiB | 00m00s [106/171] Installing pkgconf-0:2.3.0-2. 100% | 8.1 MiB/s | 91.0 KiB | 00m00s [107/171] Installing pkgconf-pkg-config 100% | 161.2 KiB/s | 1.8 KiB | 00m00s [108/171] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [109/171] Installing libnghttp2-0:1.66. 100% | 159.5 MiB/s | 163.3 KiB | 00m00s [110/171] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 59.7 KiB | 00m00s [111/171] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 64.2 KiB | 00m00s [112/171] Installing libverto-0:0.3.2-1 100% | 0.0 B/s | 27.2 KiB | 00m00s [113/171] Installing libbrotli-0:1.1.0- 100% | 272.0 MiB/s | 835.6 KiB | 00m00s [114/171] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [115/171] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s [116/171] Installing elfutils-libs-0:0. 100% | 334.6 MiB/s | 685.2 KiB | 00m00s [117/171] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [118/171] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [119/171] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [120/171] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [121/171] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [122/171] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [123/171] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [124/171] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [125/171] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [126/171] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [127/171] Installing coreutils-common-0 100% | 418.2 MiB/s | 11.3 MiB | 00m00s [128/171] Installing openssl-libs-1:3.5 100% | 445.1 MiB/s | 8.9 MiB | 00m00s [129/171] Installing coreutils-0:9.7-4. 100% | 175.7 MiB/s | 5.4 MiB | 00m00s [130/171] Installing ca-certificates-0: 100% | 2.2 MiB/s | 2.4 MiB | 00m01s [131/171] Installing libarchive-0:3.8.1 100% | 310.2 MiB/s | 953.1 KiB | 00m00s [132/171] Installing krb5-libs-0:1.21.3 100% | 176.3 MiB/s | 2.3 MiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-7.fc43.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-7.fc43.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [133/171] Installing tpm2-tss-0:4.1.3-7 100% | 313.6 MiB/s | 1.6 MiB | 00m00s [134/171] Installing ima-evm-utils-libs 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [135/171] Installing gnupg2-gpg-agent-0 100% | 33.0 MiB/s | 675.4 KiB | 00m00s [136/171] Installing libssh-0:0.11.2-1. 100% | 277.7 MiB/s | 568.8 KiB | 00m00s [137/171] Installing gzip-0:1.13-3.fc42 100% | 32.4 MiB/s | 398.4 KiB | 00m00s [138/171] Installing rpm-sequoia-0:1.9. 100% | 413.1 MiB/s | 2.5 MiB | 00m00s [139/171] Installing rpm-libs-0:5.99.91 100% | 304.4 MiB/s | 935.3 KiB | 00m00s [140/171] Installing libfsverity-0:1.6- 100% | 0.0 B/s | 33.5 KiB | 00m00s [141/171] Installing libevent-0:2.1.12- 100% | 295.2 MiB/s | 906.9 KiB | 00m00s [142/171] Installing openldap-0:2.6.10- 100% | 322.1 MiB/s | 659.6 KiB | 00m00s [143/171] Installing libcurl-0:8.15.0~r 100% | 294.4 MiB/s | 904.3 KiB | 00m00s [144/171] Installing elfutils-debuginfo 100% | 7.0 MiB/s | 86.2 KiB | 00m00s [145/171] Installing elfutils-0:0.193-2 100% | 162.4 MiB/s | 2.9 MiB | 00m00s [146/171] Installing binutils-0:2.44-3. 100% | 350.0 MiB/s | 25.9 MiB | 00m00s [147/171] Installing gdb-minimal-0:16.3 100% | 301.1 MiB/s | 13.2 MiB | 00m00s [148/171] Installing debugedit-0:5.2-1. 100% | 16.3 MiB/s | 200.5 KiB | 00m00s [149/171] Installing curl-0:8.15.0~rc3- 100% | 22.1 MiB/s | 476.2 KiB | 00m00s [150/171] Installing rpm-0:5.99.91-1.fc 100% | 83.1 MiB/s | 2.5 MiB | 00m00s [151/171] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [152/171] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [153/171] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [154/171] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.3 KiB | 00m00s [155/171] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [156/171] Installing gnupg2-dirmngr-0:2 100% | 31.9 MiB/s | 621.1 KiB | 00m00s [157/171] Installing gnupg2-0:2.4.8-2.f 100% | 242.6 MiB/s | 6.6 MiB | 00m00s [158/171] Installing rpm-sign-libs-0:5. 100% | 39.6 MiB/s | 40.6 KiB | 00m00s [159/171] Installing rpm-build-libs-0:5 100% | 262.9 MiB/s | 269.2 KiB | 00m00s [160/171] Installing gpgverify-0:2.2-1. 100% | 0.0 B/s | 9.4 KiB | 00m00s [161/171] Installing rpm-build-0:5.99.9 100% | 22.4 MiB/s | 298.4 KiB | 00m00s [162/171] Installing pyproject-srpm-mac 100% | 0.0 B/s | 2.5 KiB | 00m00s [163/171] Installing redhat-rpm-config- 100% | 91.7 MiB/s | 187.8 KiB | 00m00s [164/171] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [165/171] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [166/171] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [167/171] Installing python-srpm-macros 100% | 0.0 B/s | 52.8 KiB | 00m00s [168/171] Installing which-0:2.23-2.fc4 100% | 7.0 MiB/s | 85.7 KiB | 00m00s [169/171] Installing util-linux-0:2.41. 100% | 108.1 MiB/s | 3.6 MiB | 00m00s [170/171] Installing shadow-utils-2:4.1 100% | 150.1 MiB/s | 4.1 MiB | 00m00s [171/171] Installing info-0:7.2-4.fc43. 100% | 240.5 KiB/s | 354.3 KiB | 00m01s Warning: skipped OpenPGP checks for 1 package from repository: copr_base Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-1.fc43.x86_64 alternatives-1.33-1.fc43.x86_64 ansible-srpm-macros-1-17.1.fc42.noarch audit-libs-4.1.0-1.fc43.x86_64 bash-5.2.37-3.fc43.x86_64 binutils-2.44-3.fc43.x86_64 build-reproducibility-srpm-macros-0.6.0-1.fc43.noarch bzip2-1.0.8-20.fc42.x86_64 bzip2-libs-1.0.8-20.fc42.x86_64 ca-certificates-2024.2.69_v8.0.401-5.fc42.noarch coreutils-9.7-4.fc43.x86_64 coreutils-common-9.7-4.fc43.x86_64 cpio-2.15-2.fc41.x86_64 crypto-policies-20250620-1.git9496ef7.fc43.noarch curl-8.15.0~rc3-1.fc43.x86_64 cyrus-sasl-lib-2.1.28-30.fc42.x86_64 debugedit-5.2-1.fc43.x86_64 diffutils-3.12-2.fc43.x86_64 dwz-0.16-1.fc43.x86_64 ed-1.21.1-1.fc43.x86_64 efi-srpm-macros-6-3.fc43.noarch elfutils-0.193-2.fc43.x86_64 elfutils-debuginfod-client-0.193-2.fc43.x86_64 elfutils-default-yama-scope-0.193-2.fc43.noarch elfutils-libelf-0.193-2.fc43.x86_64 elfutils-libs-0.193-2.fc43.x86_64 fedora-gpg-keys-43-0.2.noarch fedora-release-43-0.16.noarch fedora-release-common-43-0.16.noarch fedora-release-identity-basic-43-0.16.noarch fedora-repos-43-0.2.noarch fedora-repos-rawhide-43-0.2.noarch file-5.46-5.fc43.x86_64 file-libs-5.46-5.fc43.x86_64 filesystem-3.18-44.fc43.x86_64 filesystem-srpm-macros-3.18-44.fc43.noarch findutils-4.10.0-5.fc42.x86_64 fonts-srpm-macros-2.0.5-22.fc43.noarch forge-srpm-macros-0.4.0-2.fc42.noarch fpc-srpm-macros-1.3-14.fc42.noarch gawk-5.3.2-1.fc43.x86_64 gdb-minimal-16.3-3.fc43.x86_64 gdbm-libs-1.23-9.fc42.x86_64 ghc-srpm-macros-1.9.2-2.fc42.noarch glibc-2.41.9000-20.fc43.x86_64 glibc-common-2.41.9000-20.fc43.x86_64 glibc-gconv-extra-2.41.9000-20.fc43.x86_64 glibc-minimal-langpack-2.41.9000-20.fc43.x86_64 gmp-6.3.0-3.fc43.x86_64 gnat-srpm-macros-6-7.fc42.noarch gnupg2-2.4.8-2.fc43.x86_64 gnupg2-dirmngr-2.4.8-2.fc43.x86_64 gnupg2-gpg-agent-2.4.8-2.fc43.x86_64 gnupg2-gpgconf-2.4.8-2.fc43.x86_64 gnupg2-keyboxd-2.4.8-2.fc43.x86_64 gnupg2-verify-2.4.8-2.fc43.x86_64 gnutls-3.8.10-1.fc43.x86_64 go-srpm-macros-3.6.0-7.fc43.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-b0f4950458f69e1150c6c5edc8ac4916105ef944-65ca83d1 gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf gpgverify-2.2-1.fc43.noarch grep-3.12-1.fc43.x86_64 gzip-1.13-3.fc42.x86_64 ima-evm-utils-libs-1.6.2-5.fc43.x86_64 info-7.2-4.fc43.x86_64 jansson-2.14-2.fc42.x86_64 java-srpm-macros-1-6.fc43.noarch json-c-0.18-4.fc43.x86_64 kernel-srpm-macros-1.0-25.fc42.noarch keyutils-libs-1.6.3-5.fc42.x86_64 krb5-libs-1.21.3-6.fc43.x86_64 libacl-2.3.2-3.fc42.x86_64 libarchive-3.8.1-1.fc43.x86_64 libassuan-2.5.7-3.fc42.x86_64 libattr-2.5.2-5.fc42.x86_64 libblkid-2.41.1-10.fc43.x86_64 libbrotli-1.1.0-7.fc43.x86_64 libcap-2.76-1.fc43.x86_64 libcap-ng-0.8.5-5.fc43.x86_64 libcom_err-1.47.3-1.fc43.x86_64 libcurl-8.15.0~rc3-1.fc43.x86_64 libeconf-0.7.9-1.fc43.x86_64 libevent-2.1.12-15.fc42.x86_64 libfdisk-2.41.1-10.fc43.x86_64 libffi-3.5.1-1.fc43.x86_64 libfsverity-1.6-2.fc42.x86_64 libgcc-15.1.1-2.fc43.x86_64 libgcrypt-1.11.1-1.fc43.x86_64 libgomp-15.1.1-2.fc43.x86_64 libgpg-error-1.55-1.fc43.x86_64 libidn2-2.3.8-1.fc43.x86_64 libksba-1.6.7-3.fc42.x86_64 liblastlog2-2.41.1-10.fc43.x86_64 libmount-2.41.1-10.fc43.x86_64 libnghttp2-1.66.0-1.fc43.x86_64 libpkgconf-2.3.0-2.fc42.x86_64 libpsl-0.21.5-5.fc42.x86_64 libselinux-3.9-0.rc2.1.fc43.x86_64 libsemanage-3.9-0.rc2.1.fc43.x86_64 libsepol-3.9-0.rc2.1.fc43.x86_64 libsmartcols-2.41.1-10.fc43.x86_64 libssh-0.11.2-1.fc43.x86_64 libssh-config-0.11.2-1.fc43.noarch libstdc++-15.1.1-2.fc43.x86_64 libtasn1-4.20.0-1.fc43.x86_64 libtool-ltdl-2.5.4-5.fc43.x86_64 libunistring-1.1-9.fc42.x86_64 libusb1-1.0.28-2.fc43.x86_64 libuuid-2.41.1-10.fc43.x86_64 libverto-0.3.2-10.fc42.x86_64 libxcrypt-4.4.38-7.fc43.x86_64 libxml2-2.12.10-2.fc43.x86_64 libzstd-1.5.7-1.fc43.x86_64 lua-libs-5.4.8-1.fc43.x86_64 lua-srpm-macros-1-15.fc42.noarch lz4-libs-1.10.0-2.fc42.x86_64 mpfr-4.2.2-1.fc43.x86_64 ncurses-base-6.5-6.20250614.fc43.noarch ncurses-libs-6.5-6.20250614.fc43.x86_64 nettle-3.10.1-1.fc43.x86_64 npth-1.8-2.fc42.x86_64 ocaml-srpm-macros-10-4.fc42.noarch openblas-srpm-macros-2-19.fc42.noarch openldap-2.6.10-2.fc43.x86_64 openssl-libs-3.5.1-1.fc43.x86_64 p11-kit-0.25.5-8.fc43.x86_64 p11-kit-trust-0.25.5-8.fc43.x86_64 package-notes-srpm-macros-0.5-13.fc42.noarch pam-libs-1.7.1-1.fc43.x86_64 patch-2.8-1.fc43.x86_64 pcre2-10.45-1.fc43.x86_64 pcre2-syntax-10.45-1.fc43.noarch perl-srpm-macros-1-59.fc43.noarch pkgconf-2.3.0-2.fc42.x86_64 pkgconf-m4-2.3.0-2.fc42.noarch pkgconf-pkg-config-2.3.0-2.fc42.x86_64 popt-1.19-8.fc42.x86_64 publicsuffix-list-dafsa-20250616-1.fc43.noarch pyproject-srpm-macros-1.18.3-1.fc43.noarch python-srpm-macros-3.14-2.fc43.noarch qt5-srpm-macros-5.15.17-1.fc43.noarch qt6-srpm-macros-6.9.1-1.fc43.noarch readline-8.2-13.fc43.x86_64 redhat-rpm-config-343-6.fc43.noarch rpm-5.99.91-1.fc43.x86_64 rpm-build-5.99.91-1.fc43.x86_64 rpm-build-libs-5.99.91-1.fc43.x86_64 rpm-libs-5.99.91-1.fc43.x86_64 rpm-sequoia-1.9.0-1.fc43.x86_64 rpm-sign-libs-5.99.91-1.fc43.x86_64 rust-srpm-macros-26.3-4.fc42.noarch sed-4.9-4.fc42.x86_64 setup-2.15.0-25.fc43.noarch shadow-utils-4.17.4-1.fc43.x86_64 sqlite-libs-3.50.2-1.fc43.x86_64 systemd-libs-257.7-1.fc43.x86_64 systemd-standalone-sysusers-257.7-1.fc43.x86_64 tar-1.35-5.fc42.x86_64 tpm2-tss-4.1.3-7.fc43.x86_64 tree-sitter-srpm-macros-0.4.1-1.fc43.noarch unzip-6.0-66.fc42.x86_64 util-linux-2.41.1-10.fc43.x86_64 util-linux-core-2.41.1-10.fc43.x86_64 which-2.23-2.fc43.x86_64 xxhash-libs-0.8.3-2.fc42.x86_64 xz-5.8.1-1.fc43.x86_64 xz-libs-5.8.1-1.fc43.x86_64 zig-srpm-macros-1-4.fc42.noarch zip-3.0-43.fc42.x86_64 zlib-ng-compat-2.2.4-2.fc43.x86_64 zstd-1.5.7-1.fc43.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1748908800 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.99.0-6.fc43.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1752610808.358233/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-6evt14n3/avogadro2-libs/avogadro2-libs.spec) Config(child) 0 minutes 18 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.99.0-6.fc43.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1752610808.358233/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1752610808.358233/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1752610808.358233/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-5.99.91-1.fc43.x86_64 rpm-sequoia-1.9.0-1.fc43.x86_64 dnf5-5.2.15.0-1.fc43.x86_64 dnf5-plugins-5.2.15.0-1.fc43.x86_64 Finish: chroot init Start: build phase for avogadro2-libs-1.99.0-6.fc43.src.rpm Start: build setup for avogadro2-libs-1.99.0-6.fc43.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1748908800 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.99.0-6.fc43.src.rpm Updating and loading repositories: Copr repository 100% | 12.4 KiB/s | 1.5 KiB | 00m00s fedora 100% | 148.6 KiB/s | 27.3 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: boost-devel x86_64 1.83.0-13.fc43 fedora 143.0 MiB chrpath x86_64 0.16-25.fc42 fedora 58.4 KiB cmake x86_64 3.31.6-3.fc43 copr_base 34.5 MiB doxygen x86_64 2:1.14.0-3.fc43 fedora 19.9 MiB eigen3-devel noarch 3.4.0-17.fc43 copr_base 8.4 MiB gcc x86_64 15.1.1-2.fc43 fedora 111.1 MiB gcc-c++ x86_64 15.1.1-2.fc43 fedora 41.3 MiB glew-devel x86_64 2.2.0-10.fc42 fedora 1.8 MiB graphviz x86_64 13.0.1-3.fc43 fedora 20.8 MiB hdf5-devel x86_64 1.14.6-3.fc43 fedora 3.3 MiB jsoncpp-devel x86_64 1.9.6-1.fc43 copr_base 82.2 KiB libarchive-devel x86_64 3.8.1-1.fc43 fedora 183.0 KiB make x86_64 1:4.4.1-10.fc42 fedora 1.8 MiB mesa-libGLU-devel x86_64 9.0.3-6.fc42 fedora 17.0 KiB mmtf-cpp-devel x86_64 1.1.0-7.fc43 copr_base 114.4 KiB openbabel-devel x86_64 3.1.1-35.fc43 fedora 865.5 KiB python3-devel x86_64 3.14.0~b4-1.fc43 fedora 1.9 MiB qt5-qtbase-devel x86_64 5.15.17-1.fc43 fedora 19.1 MiB qt5-qtsvg-devel x86_64 5.15.17-1.fc43 fedora 83.6 KiB qt5-qttools-devel x86_64 5.15.17-1.fc43 fedora 933.8 KiB spglib-devel x86_64 2.6.0-3.fc43 fedora 60.1 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-14.fc42 fedora 192.7 KiB adobe-mappings-cmap noarch 20231115-2.fc42 fedora 15.2 MiB adobe-mappings-cmap-deprecated noarch 20231115-2.fc42 fedora 582.1 KiB adobe-mappings-pdf noarch 20190401-9.fc42 fedora 4.4 MiB annobin-docs noarch 12.98-1.fc43 fedora 98.9 KiB annobin-plugin-gcc x86_64 12.98-1.fc43 fedora 1.0 MiB avahi-libs x86_64 0.9~rc2-3.fc43 fedora 171.6 KiB boost x86_64 1.83.0-13.fc43 fedora 1.3 KiB boost-atomic x86_64 1.83.0-13.fc43 fedora 20.9 KiB boost-chrono x86_64 1.83.0-13.fc43 fedora 37.5 KiB boost-container x86_64 1.83.0-13.fc43 fedora 65.4 KiB boost-context x86_64 1.83.0-13.fc43 fedora 12.4 KiB boost-contract x86_64 1.83.0-13.fc43 fedora 99.1 KiB boost-coroutine x86_64 1.83.0-13.fc43 fedora 21.1 KiB boost-date-time x86_64 1.83.0-13.fc43 fedora 12.2 KiB boost-fiber x86_64 1.83.0-13.fc43 fedora 78.7 KiB boost-filesystem x86_64 1.83.0-13.fc43 fedora 143.6 KiB boost-graph x86_64 1.83.0-13.fc43 fedora 363.1 KiB boost-iostreams x86_64 1.83.0-13.fc43 fedora 90.6 KiB boost-json x86_64 1.83.0-13.fc43 fedora 337.1 KiB boost-locale x86_64 1.83.0-13.fc43 fedora 617.7 KiB boost-log x86_64 1.83.0-13.fc43 fedora 1.5 MiB boost-math x86_64 1.83.0-13.fc43 fedora 642.6 KiB boost-nowide x86_64 1.83.0-13.fc43 fedora 20.8 KiB boost-numpy3 x86_64 1.83.0-13.fc43 fedora 57.6 KiB boost-program-options x86_64 1.83.0-13.fc43 fedora 280.8 KiB boost-python3 x86_64 1.83.0-13.fc43 fedora 258.2 KiB boost-random x86_64 1.83.0-13.fc43 fedora 29.6 KiB boost-regex x86_64 1.83.0-13.fc43 fedora 291.1 KiB boost-serialization x86_64 1.83.0-13.fc43 fedora 441.6 KiB boost-stacktrace x86_64 1.83.0-13.fc43 fedora 59.8 KiB boost-system x86_64 1.83.0-13.fc43 fedora 12.2 KiB boost-test x86_64 1.83.0-13.fc43 fedora 647.2 KiB boost-thread x86_64 1.83.0-13.fc43 fedora 132.7 KiB boost-timer x86_64 1.83.0-13.fc43 fedora 21.0 KiB boost-type_erasure x86_64 1.83.0-13.fc43 fedora 54.1 KiB boost-wave x86_64 1.83.0-13.fc43 fedora 860.3 KiB cairo x86_64 1.18.4-1.fc43 fedora 1.8 MiB cairo-gobject x86_64 1.18.4-1.fc43 fedora 31.1 KiB clang-libs x86_64 20.1.8-1.fc43 fedora 118.6 MiB clang-resource-filesystem x86_64 20.1.8-1.fc43 fedora 15.3 KiB cmake-data noarch 3.31.6-3.fc43 copr_base 8.5 MiB cmake-filesystem x86_64 3.31.6-3.fc43 copr_base 0.0 B cmake-rpm-macros noarch 3.31.6-3.fc43 copr_base 7.7 KiB cpp x86_64 15.1.1-2.fc43 fedora 37.9 MiB cpuinfo x86_64 24.09.26-2.git1e83a2f.fc43.1 fedora 107.0 KiB cups-filesystem noarch 1:2.4.12-3.fc43 fedora 0.0 B cups-libs x86_64 1:2.4.12-3.fc43 fedora 618.7 KiB dbus-libs x86_64 1:1.16.0-3.fc43 copr_base 345.6 KiB default-fonts-core-sans noarch 4.2-4.fc42 fedora 11.9 KiB double-conversion x86_64 3.3.1-3.fc43 fedora 97.6 KiB duktape x86_64 2.7.0-9.fc42 fedora 615.8 KiB emacs-filesystem noarch 1:30.0-4.fc42 fedora 0.0 B expat x86_64 2.7.1-1.fc43 fedora 294.2 KiB flexiblas x86_64 3.4.5-1.fc43 fedora 50.4 KiB flexiblas-netlib x86_64 3.4.5-1.fc43 fedora 10.9 MiB flexiblas-openblas-openmp x86_64 3.4.5-1.fc43 fedora 39.2 KiB fmt x86_64 11.2.0-2.fc43 fedora 266.9 KiB fontconfig x86_64 2.17.0-2.fc43 fedora 765.9 KiB fonts-filesystem noarch 1:2.0.5-22.fc43 fedora 0.0 B freetype x86_64 2.13.3-2.fc42 fedora 858.2 KiB fribidi x86_64 1.0.16-2.fc42 fedora 194.3 KiB gcc-gfortran x86_64 15.1.1-2.fc43 fedora 40.3 MiB gcc-plugin-annobin x86_64 15.1.1-2.fc43 fedora 57.2 KiB gd x86_64 2.3.3-18.fc42 fedora 403.6 KiB gdk-pixbuf2 x86_64 2.42.12-10.fc42 fedora 2.5 MiB glib2 x86_64 2.85.1-1.fc43 fedora 14.7 MiB glibc-devel x86_64 2.41.9000-20.fc43 fedora 2.3 MiB glx-utils x86_64 9.0.0-9.fc42 fedora 418.6 KiB google-droid-sans-fonts noarch 20200215-22.fc42 fedora 6.3 MiB google-noto-fonts-common noarch 20250701-2.fc43 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 20250701-2.fc43 fedora 1.4 MiB gpgme x86_64 1.24.3-2.fc43 fedora 587.9 KiB gpgmepp x86_64 1.24.3-2.fc43 fedora 429.2 KiB graphite2 x86_64 1.3.14-18.fc43 copr_base 191.8 KiB graphviz-libs x86_64 13.0.1-3.fc43 fedora 1.2 MiB groff-base x86_64 1.23.0-8.fc42 fedora 3.9 MiB gts x86_64 0.7.6-50.20121130.fc42 fedora 668.5 KiB harfbuzz x86_64 11.2.1-1.fc43 fedora 2.8 MiB hdf5 x86_64 1.14.6-3.fc43 fedora 6.4 MiB hwdata noarch 0.397-1.fc43 fedora 9.6 MiB inchi-libs x86_64 1.0.6-12.fc42 fedora 1.3 MiB jbig2dec-libs x86_64 0.20-6.fc42 fedora 169.0 KiB jbigkit-libs x86_64 2.1-31.fc42 fedora 121.4 KiB js-doxygen noarch 2:1.14.0-3.fc43 fedora 375.0 KiB jsoncpp x86_64 1.9.6-1.fc43 copr_base 261.6 KiB kernel-headers x86_64 6.16.0-0.rc5.45.fc43 fedora 6.7 MiB lasi x86_64 1.1.3-16.fc43 copr_base 126.7 KiB lcms2 x86_64 2.16-5.fc42 fedora 437.7 KiB libGLEW x86_64 2.2.0-10.fc42 fedora 748.3 KiB libICE x86_64 1.1.2-2.fc42 fedora 198.4 KiB libSM x86_64 1.2.5-2.fc42 fedora 105.0 KiB libX11 x86_64 1.8.11-1.fc42 fedora 1.3 MiB libX11-common noarch 1.8.11-1.fc42 fedora 1.2 MiB libX11-devel x86_64 1.8.11-1.fc42 fedora 1.0 MiB 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KiB perl-Fcntl x86_64 1.20-519.fc43 fedora 48.8 KiB perl-File-Basename noarch 2.86-519.fc43 fedora 14.0 KiB perl-File-Find noarch 1.44-519.fc43 fedora 42.0 KiB perl-File-Path noarch 2.18-519.fc43 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.100-519.fc43 fedora 162.3 KiB perl-File-stat noarch 1.14-519.fc43 fedora 12.5 KiB perl-FileHandle noarch 2.05-519.fc43 fedora 9.4 KiB perl-Getopt-Long noarch 1:2.58-519.fc43 fedora 144.5 KiB perl-Getopt-Std noarch 1.14-519.fc43 fedora 11.2 KiB perl-HTTP-Tiny noarch 0.090-520.fc43 fedora 154.4 KiB perl-IO x86_64 1.55-519.fc43 fedora 147.4 KiB perl-IO-Socket-IP noarch 0.43-520.fc43 fedora 100.3 KiB perl-IO-Socket-SSL noarch 2.095-1.fc43 fedora 714.5 KiB perl-IPC-Open3 noarch 1.24-519.fc43 fedora 27.7 KiB perl-MIME-Base32 noarch 1.303-23.fc42 fedora 30.7 KiB perl-MIME-Base64 x86_64 3.16-519.fc43 fedora 42.0 KiB perl-Net-SSLeay x86_64 1.94-10.fc43 fedora 1.3 MiB perl-POSIX x86_64 2.23-519.fc43 fedora 231.4 KiB perl-PathTools x86_64 3.94-519.fc43 fedora 180.0 KiB perl-Pod-Escapes noarch 1:1.07-519.fc43 fedora 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-520.fc43 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.47-2.fc43 fedora 565.2 KiB perl-Pod-Usage noarch 4:2.05-519.fc43 fedora 86.3 KiB perl-Scalar-List-Utils x86_64 5:1.69-519.fc43 fedora 144.8 KiB perl-SelectSaver noarch 1.02-519.fc43 fedora 2.2 KiB perl-Socket x86_64 4:2.039-2.fc43 fedora 120.1 KiB perl-Storable x86_64 1:3.37-520.fc43 fedora 231.2 KiB perl-Symbol noarch 1.09-519.fc43 fedora 6.8 KiB perl-Term-ANSIColor noarch 5.01-520.fc43 fedora 97.5 KiB perl-Term-Cap noarch 1.18-519.fc43 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-519.fc43 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-519.fc43 fedora 22.6 KiB perl-Time-Local noarch 2:1.350-519.fc43 fedora 68.9 KiB perl-URI noarch 5.32-1.fc43 fedora 261.2 KiB perl-base noarch 2.27-519.fc43 fedora 12.6 KiB perl-constant noarch 1.33-520.fc43 fedora 26.2 KiB perl-if noarch 0.61.000-519.fc43 fedora 5.8 KiB perl-interpreter x86_64 4:5.42.0-519.fc43 fedora 118.6 KiB perl-libnet noarch 3.15-520.fc43 fedora 289.4 KiB perl-libs x86_64 4:5.42.0-519.fc43 fedora 11.5 MiB perl-locale noarch 1.13-519.fc43 fedora 6.1 KiB perl-mro x86_64 1.29-519.fc43 fedora 41.6 KiB perl-overload noarch 1.40-519.fc43 fedora 71.6 KiB perl-overloading noarch 0.02-519.fc43 fedora 4.9 KiB perl-parent noarch 1:0.244-519.fc43 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-519.fc43 fedora 317.4 KiB perl-vars noarch 1.05-519.fc43 fedora 3.9 KiB pixman x86_64 0.46.2-1.fc43 fedora 710.3 KiB poppler x86_64 25.02.0-1.fc43 copr_base 3.7 MiB poppler-data noarch 0.4.11-9.fc42 fedora 12.3 MiB poppler-glib x86_64 25.02.0-1.fc43 copr_base 608.3 KiB pyproject-rpm-macros noarch 1.18.3-1.fc43 fedora 114.5 KiB python-pip-wheel noarch 25.1.1-11.fc43 fedora 1.2 MiB python-rpm-macros noarch 3.14-2.fc43 fedora 22.8 KiB python3 x86_64 3.14.0~b4-1.fc43 fedora 28.9 KiB python3-libs x86_64 3.14.0~b4-1.fc43 fedora 42.9 MiB python3-numpy x86_64 1:2.3.1-1.fc43 fedora 41.1 MiB python3-numpy-f2py x86_64 1:2.3.1-1.fc43 fedora 2.1 MiB python3-packaging noarch 25.0-3.fc43 fedora 607.5 KiB python3-rpm-generators noarch 14-12.fc42 fedora 81.7 KiB python3-rpm-macros noarch 3.14-2.fc43 fedora 6.5 KiB qt-settings noarch 42.0-4.fc43 fedora 1.1 KiB qt5-designer x86_64 5.15.17-1.fc43 fedora 479.7 KiB qt5-doctools x86_64 5.15.17-1.fc43 fedora 1.8 MiB qt5-filesystem x86_64 5.15.17-1.fc43 fedora 0.0 B qt5-linguist x86_64 5.15.17-1.fc43 fedora 2.8 MiB qt5-qtbase x86_64 5.15.17-1.fc43 fedora 10.0 MiB qt5-qtbase-common noarch 5.15.17-1.fc43 fedora 78.0 B qt5-qtbase-gui x86_64 5.15.17-1.fc43 fedora 20.2 MiB qt5-qtdeclarative x86_64 5.15.17-1.fc43 fedora 14.5 MiB qt5-qtsvg x86_64 5.15.17-1.fc43 fedora 627.3 KiB qt5-qttools x86_64 5.15.17-1.fc43 fedora 88.3 KiB qt5-qttools-common noarch 5.15.17-1.fc43 fedora 7.5 KiB qt5-qttools-libs-designer x86_64 5.15.17-1.fc43 fedora 4.9 MiB qt5-qttools-libs-designercomponents x86_64 5.15.17-1.fc43 fedora 2.4 MiB qt5-qttools-libs-help x86_64 5.15.17-1.fc43 fedora 456.9 KiB qt5-rpm-macros noarch 5.15.17-1.fc43 fedora 1.6 KiB rav1e-libs x86_64 0.7.1-5.fc42 fedora 3.0 MiB rhash x86_64 1.4.5-2.fc42 fedora 351.0 KiB rsvg-pixbuf-loader x86_64 2.60.0-1.fc43 fedora 345.0 KiB shared-mime-info x86_64 2.4-1.fc43 fedora 5.2 MiB spdlog x86_64 1.15.3-1.fc43 fedora 360.1 KiB spglib x86_64 2.6.0-3.fc43 fedora 1.8 MiB spirv-tools-libs x86_64 2025.2-1.fc43 fedora 5.8 MiB svt-av1-libs x86_64 2.3.0-1.fc43 copr_base 5.6 MiB tzdata noarch 2025b-1.fc43 fedora 1.6 MiB urw-base35-bookman-fonts noarch 20200910-25.fc43 fedora 1.4 MiB urw-base35-c059-fonts noarch 20200910-25.fc43 fedora 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-25.fc43 fedora 84.3 KiB urw-base35-fonts noarch 20200910-25.fc43 fedora 5.3 KiB urw-base35-fonts-common noarch 20200910-25.fc43 fedora 37.4 KiB urw-base35-gothic-fonts noarch 20200910-25.fc43 fedora 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-25.fc43 fedora 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-25.fc43 fedora 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-25.fc43 fedora 2.4 MiB urw-base35-p052-fonts noarch 20200910-25.fc43 fedora 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-25.fc43 fedora 64.9 KiB urw-base35-z003-fonts noarch 20200910-25.fc43 fedora 390.8 KiB vim-filesystem noarch 2:9.1.1537-1.fc43 fedora 40.0 B vulkan-headers noarch 1.4.313.0-1.fc43 fedora 30.9 MiB vulkan-loader x86_64 1.4.313.0-1.fc43 fedora 532.4 KiB vulkan-loader-devel x86_64 1.4.313.0-1.fc43 fedora 8.0 KiB web-assets-filesystem noarch 5-23.fc42 fedora 34.0 B xapian-core-libs x86_64 1.4.29-2.fc43 fedora 2.1 MiB xcb-util x86_64 0.4.1-7.fc42 fedora 26.3 KiB xcb-util-image x86_64 0.4.1-7.fc42 fedora 22.2 KiB xcb-util-keysyms x86_64 0.4.1-7.fc42 fedora 16.7 KiB xcb-util-renderutil x86_64 0.3.10-7.fc42 fedora 24.4 KiB xcb-util-wm x86_64 0.4.2-7.fc42 fedora 81.2 KiB xkeyboard-config noarch 2.44-1.fc43 fedora 6.6 MiB xml-common noarch 0.6.3-66.fc42 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-4.fc42 fedora 1.7 MiB zlib-ng-compat-devel x86_64 2.2.4-2.fc43 copr_base 107.0 KiB Transaction Summary: Installing: 331 packages Total size of inbound packages is 352 MiB. Need to download 352 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B). 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Finish: build setup for avogadro2-libs-1.99.0-6.fc43.src.rpm Start: rpmbuild avogadro2-libs-1.99.0-6.fc43.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1748908800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.lQyyoz Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ysW9Lh + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + rm -rf avogadrolibs-1.99.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogadrolibs-1.99.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadrolibs-1.99.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/avogadro2-libs-1.99.0-Fix_typo.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/avogadro2-libs-1.98.1-use_upstream_cmake_config.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + tar -xf /builddir/build/SOURCES/avogenerators-1.98.0.tar.gz + mv avogenerators-1.98.0 avogadrogenerators + tar -xf /builddir/build/SOURCES/molecules-1.98.0.tar.gz + mv molecules-1.98.0 molecules + tar -xf /builddir/build/SOURCES/crystals-1.98.0.tar.gz + mv crystals-1.98.0 crystals + tar -xf /builddir/build/SOURCES/fragments-1.99.0.tar.gz + mv fragments-1.99.0 fragments + mv molecules/LICENSE molecules/LICENSE-molecules + mv fragments/LICENSE fragments/LICENSE-fragments + mv avogadrogenerators/README.md avogadrogenerators/README-avogenerators.md + sed -e 's|${AvogadroLibs_SOURCE_DIR}/../|${AvogadroLibs_SOURCE_DIR}/|g' -i avogadro/qtplugins/insertfragment/CMakeLists.txt + sed -e 's|${AvogadroLibs_SOURCE_DIR}/../|${AvogadroLibs_SOURCE_DIR}/|g' -i avogadro/qtplugins/quantuminput/CMakeLists.txt + sed -e 's|${AvogadroLibs_SOURCE_DIR}/../|${AvogadroLibs_SOURCE_DIR}/|g' -i avogadro/qtplugins/templatetool/CMakeLists.txt + mv thirdparty/libgwavi/README.md thirdparty/libgwavi/README-libgwavi.md + mv fragments/README.md fragments/README-fragments.md + RPM_EC=0 ++ jobs -p + exit 0 Executing(%conf): /bin/sh -e /var/tmp/rpm-tmp.d9idpe + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.99.0 + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_BUILD_TYPE:STRING=Release -DINSTALL_INCLUDE_DIR:PATH=include/avogadro2 -DINSTALL_LIBRARY_DIR:PATH=lib64 -Wno-dev -DENABLE_GLSL:BOOL=ON -DUSE_PYTHON:BOOL=OFF -DUSE_LIBARCHIVE:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON -DENABLE_TESTING:BOOL=OFF -DUSE_MMTF:BOOL=ON -DUSE_QT:BOOL=ON -DUSE_MOLEQUEUE:BOOL=ON -DUSE_VTK:BOOL=OFF -DUSE_HDF5:BOOL=ON -DUSE_SPGLIB:BOOL=ON -DBUILD_GPL_PLUGINS:BOOL=ON -DBUILD_STATIC_PLUGINS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON -DUSE_LIBMSYM:BOOL=OFF -DOpenBabel3_INCLUDE_DIR:PATH=/usr/include/openbabel3 -- The C compiler identification is GNU 15.1.1 -- The CXX compiler identification is GNU 15.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.99.0 -- Component omp of Spglib: NOT FOUND -- Component fortran of Spglib: NOT FOUND -- Found package: Spglib -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.6") found components: C -- Found MMTF: /usr/include -- Found OpenGL: /usr/lib64/libOpenGL.so -- Found GLEW: /usr/include (found version "2.2.0") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.14", minimum required is "3") -- Found OpenBabel3: /usr/include/openbabel3 We have dalton.py;gamessuk.py;gaussian.py;molpro.py;mopac.py;nwchem.py;orca.py;psi4.py;pyscf.py;qchem.py;terachem.py We have /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/dalton.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/gamessuk.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/gaussian.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/molpro.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/mopac.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/nwchem.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/orca.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/psi4.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/pyscf.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/qchem.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/terachem.py -- Found LibArchive: /usr/lib64/libarchive.so (found version "3.8.1") -- Found Doxygen: /usr/bin/doxygen (found version "1.14.0") found components: doxygen dot -- Configuring done (1.1s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE ENABLE_GLSL INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR USE_MOLEQUEUE -- Build files have been written to: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bMylmn + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.99.0 + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 4 [1/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/angleiterator.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/angleiterator.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/angleiterator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.cpp [2/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/atomutilities.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/atomutilities.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/atomutilities.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomutilities.cpp [3/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:8: In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:113:18: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM[(double &)&pos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: ‘MEM[(double &)&pos3d + 16]’ was declared here 70 | Vector3 pos3d; | ^~~~~ In file included from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/istream:43, from /usr/include/c++/15/sstream:42, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:6: In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:173:76: /usr/include/c++/15/bits/ostream.h:232:25: warning: ‘MEM[(Scalar &)&fpos3d]’ may be used uninitialized [-Wmaybe-uninitialized] 232 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d]’ was declared here 71 | Vector3 fpos3d; | ^~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:181:76: /usr/include/c++/15/bits/ostream.h:232:25: warning: ‘MEM[(Scalar &)&fpos3d + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 232 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d + 8]’ was declared here 71 | Vector3 fpos3d; | ^~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:189:76: /usr/include/c++/15/bits/ostream.h:232:25: warning: ‘MEM[(Scalar &)&fpos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 232 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d + 16]’ was declared here 71 | Vector3 fpos3d; | ^~~~~~ [4/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/elements.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/elements.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/elements.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elements.cpp [5/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp In file included from /usr/include/c++/15/vector:68, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp:6: In member function ‘std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)’, inlined from ‘Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:177:19, inlined from ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp:676:16, inlined from ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp:666:6: /usr/include/c++/15/bits/stl_vector.h:1167:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/vector:74: /usr/include/c++/15/bits/vector.tcc: In function ‘Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)’: /usr/include/c++/15/bits/vector.tcc:652:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)’ declared here 652 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp:676:16: note: ‘’ declared here 676 | output.resize(coords.size()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ [6/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/cube.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/cube.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/cube.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.cpp [7/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/dihedraliterator.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/dihedraliterator.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/dihedraliterator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.cpp [8/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/layer.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/layer.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/layer.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.cpp [9/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/gaussiansettools.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/gaussiansettools.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/gaussiansettools.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussiansettools.cpp [11/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/graph.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/graph.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/graph.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::removeEdge(unsigned long, unsigned long)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:311:5: warning: ‘edgeIndex’ may be used uninitialized [-Wmaybe-uninitialized] 311 | if (m_edgeMap[b][i] == edgeIndex) { | ^~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:299:10: note: ‘edgeIndex’ was declared here 299 | size_t edgeIndex; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::swapEdgeIndices(unsigned long, unsigned long)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:421:17: warning: ‘MEM[(long unsigned int * &)&changeTo2]’ may be used uninitialized [-Wmaybe-uninitialized] 421 | *changeTo2[0] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:392:26: note: ‘MEM[(long unsigned int * &)&changeTo2]’ was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:422:17: warning: ‘MEM[(long unsigned int * &)&changeTo2 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 422 | *changeTo2[1] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:392:26: note: ‘MEM[(long unsigned int * &)&changeTo2 + 8]’ was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:423:17: warning: ‘MEM[(long unsigned int * &)&changeTo1]’ may be used uninitialized [-Wmaybe-uninitialized] 423 | *changeTo1[0] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:405:26: note: ‘MEM[(long unsigned int * &)&changeTo1]’ was declared here 405 | std::array changeTo1; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:424:17: warning: ‘MEM[(long unsigned int * &)&changeTo1 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 424 | *changeTo1[1] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:405:26: note: ‘MEM[(long unsigned int * &)&changeTo1 + 8]’ was declared here 405 | std::array changeTo1; | ^~~~~~~~~ [12/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mutex.cpp [14/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.cpp [16/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Core::Mesh::smooth(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp:189:46: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.194129].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp: In member function ‘Avogadro::Core::Mesh::smooth(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp:189:46: note: ‘’ declared here 189 | Array planarList(m_vertices.size()); | ^ [17/647] /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h: In copy constructor ‘Avogadro::Core::Molecule::Molecule(const Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:857:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder] 857 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:850:19: warning: ‘Eigen::VectorXd Avogadro::Core::Molecule::m_frozenAtomMask’ [-Wreorder] 850 | Eigen::VectorXd m_frozenAtomMask; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:37:1: warning: when initialized here [-Wreorder] 37 | Molecule::Molecule(const Molecule& other) | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h: In constructor ‘Avogadro::Core::Molecule::Molecule(Avogadro::Core::Molecule&&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:857:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder] 857 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:850:19: warning: ‘Eigen::VectorXd Avogadro::Core::Molecule::m_frozenAtomMask’ [-Wreorder] 850 | Eigen::VectorXd m_frozenAtomMask; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:133:1: warning: when initialized here [-Wreorder] 133 | Molecule::Molecule(Molecule&& other) noexcept | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp: In member function ‘void Avogadro::Core::Molecule::setFrozenAtom(Avogadro::Index, bool)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:367:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 367 | if (m_frozenAtomMask.rows() != 3 * m_atomicNumbers.size()) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:376:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 376 | if (atomId * 3 <= m_frozenAtomMask.rows() - 3) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp: In member function ‘bool Avogadro::Core::Molecule::frozenAtom(Avogadro::Index) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:386:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 386 | if (atomId * 3 <= m_frozenAtomMask.rows() - 3) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp: In member function ‘void Avogadro::Core::Molecule::setFrozenAtomAxis(Avogadro::Index, int, bool)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:398:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 398 | if (m_frozenAtomMask.rows() != 3 * m_atomicNumbers.size()) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:407:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 407 | if (atomId * 3 <= m_frozenAtomMask.rows() - 3) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [32/647] /usr/bin/g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT thirdparty/CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o -MF thirdparty/CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o.d -o 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/residue.cpp.o -MF avogadro/core/CMakeFiles/Core.dir/residue.cpp.o.d -o avogadro/core/CMakeFiles/Core.dir/residue.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp: In function ‘__static_initialization_and_destruction_0()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without 162 | } // namespace Avogadro | ^ [42/647] /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/cjsonformat.cpp.o -MF avogadro/io/CMakeFiles/IO.dir/cjsonformat.cpp.o.d -o avogadro/io/CMakeFiles/IO.dir/cjsonformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.cpp: In function ‘json Avogadro::Io::eigenColToJson(const Avogadro::MatrixX&, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.cpp:87:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 87 | for (Index i = 0; i < matrix.rows(); ++i) { | ~~^~~~~~~~~~~~~~~ [43/647] /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/pdbformat.cpp.o -MF avogadro/io/CMakeFiles/IO.dir/pdbformat.cpp.o.d -o 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o -MF avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o.d -o avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/vaspformat.cpp [45/647] /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API 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avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o.d -o avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.cpp [56/647] /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o -MF avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o.d -o avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energymanager.cpp [57/647] /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/mmtfformat.cpp.o -MF avogadro/io/CMakeFiles/IO.dir/mmtfformat.cpp.o.d -o avogadro/io/CMakeFiles/IO.dir/mmtfformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/mmtfformat.cpp [58/647] /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o -MF avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o.d -o avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h: In constructor ‘Avogadro::Calc::LennardJones::LennardJones()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:56:7: warning: ‘Avogadro::Calc::LennardJones::m_exponent’ will be initialized after [-Wreorder] 56 | int m_exponent; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:52:19: warning: ‘Avogadro::Core::UnitCell* Avogadro::Calc::LennardJones::m_cell’ [-Wreorder] 52 | Core::UnitCell* m_cell; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:14:1: warning: when initialized here [-Wreorder] 14 | LennardJones::LennardJones() | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:52:19: warning: ‘Avogadro::Calc::LennardJones::m_cell’ will be initialized after [-Wreorder] 52 | Core::UnitCell* m_cell; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:51:19: warning: ‘Avogadro::Core::Molecule* Avogadro::Calc::LennardJones::m_molecule’ [-Wreorder] 51 | Core::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:14:1: warning: when initialized here [-Wreorder] 14 | LennardJones::LennardJones() | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp: In member function ‘virtual void Avogadro::Calc::LennardJones::setMolecule(Avogadro::Core::Molecule*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:46:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 46 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:55:29: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 55 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp: In member function ‘virtual Avogadro::Real Avogadro::Calc::LennardJones::value(const Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:84:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 84 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:86:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 86 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 98 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:100:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp: In member function ‘virtual void Avogadro::Calc::LennardJones::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:128:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 128 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:130:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 130 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:154:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 154 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:156:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 156 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ [59/647] /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericoutput.cpp.o -MF avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericoutput.cpp.o.d -o avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericoutput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/genericoutput.cpp [62/647] /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o -MF avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o.d -o avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp: In member function ‘void Avogadro::QuantumIO::GaussianFchk::processLine(std::istream&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:194:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 194 | for (unsigned int i = 0; i < m_normalModes; ++i) { | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:211:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 211 | if (tmpVec.size() == m_numAtoms * 3 * m_normalModes) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:212:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 212 | for (unsigned int i = 0; i < m_normalModes; ++i) { | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:214:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 214 | for (unsigned int j = 0; j < m_numAtoms; ++j) { | ~~^~~~~~~~~~~~ [63/647] /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o -MF avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o.d -o avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/molden.cpp [64/647] /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o -MF avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o.d -o avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.cpp [65/647] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=avogadro/core/CMakeFiles/Core.dir/link.d -shared -Wl,-soname,libAvogadroCore.so.1 -o lib/libAvogadroCore.so.1.99.0 avogadro/core/CMakeFiles/Core.dir/angleiterator.cpp.o avogadro/core/CMakeFiles/Core.dir/atomutilities.cpp.o avogadro/core/CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o avogadro/core/CMakeFiles/Core.dir/cube.cpp.o avogadro/core/CMakeFiles/Core.dir/elements.cpp.o avogadro/core/CMakeFiles/Core.dir/dihedraliterator.cpp.o avogadro/core/CMakeFiles/Core.dir/gaussianset.cpp.o avogadro/core/CMakeFiles/Core.dir/gaussiansettools.cpp.o avogadro/core/CMakeFiles/Core.dir/graph.cpp.o avogadro/core/CMakeFiles/Core.dir/layer.cpp.o avogadro/core/CMakeFiles/Core.dir/layermanager.cpp.o avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o avogadro/core/CMakeFiles/Core.dir/nameatomtyper.cpp.o avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o avogadro/core/CMakeFiles/Core.dir/residue.cpp.o avogadro/core/CMakeFiles/Core.dir/ringperceiver.cpp.o avogadro/core/CMakeFiles/Core.dir/secondarystructure.cpp.o avogadro/core/CMakeFiles/Core.dir/slaterset.cpp.o avogadro/core/CMakeFiles/Core.dir/slatersettools.cpp.o avogadro/core/CMakeFiles/Core.dir/spacegroups.cpp.o avogadro/core/CMakeFiles/Core.dir/symbolatomtyper.cpp.o avogadro/core/CMakeFiles/Core.dir/unitcell.cpp.o avogadro/core/CMakeFiles/Core.dir/variantmap.cpp.o avogadro/core/CMakeFiles/Core.dir/version.cpp.o avogadro/core/CMakeFiles/Core.dir/sharedmutex.cpp.o avogadro/core/CMakeFiles/Core.dir/avospglib.cpp.o /usr/lib64/libsymspg.so.2.6.0 -lm && : /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp: In function ‘__static_initialization_and_destruction_0’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without 162 | } // namespace Avogadro | ^ [66/647] /usr/bin/cmake -E cmake_symlink_library lib/libAvogadroCore.so.1.99.0 lib/libAvogadroCore.so.1 lib/libAvogadroCore.so && : [67/647] /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o -MF avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o.d -o avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.cpp [68/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrow_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/arrow_vs.h arrow_vs [69/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylinders_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/cylinders_fs.h cylinders_fs [70/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylinders_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/cylinders_vs.h cylinders_vs [71/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedline_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/dashedline_fs.h dashedline_fs [72/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedline_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/dashedline_vs.h dashedline_vs [73/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestrip_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/linestrip_fs.h linestrip_fs [74/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestrip_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/linestrip_vs.h linestrip_vs [75/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/mesh_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/mesh_fs.h mesh_fs [76/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/mesh_opaque_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/mesh_opaque_fs.h mesh_opaque_fs [77/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/mesh_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/mesh_vs.h mesh_vs [78/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solid_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/solid_vs.h solid_vs [79/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solid_first_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/solid_first_fs.h solid_first_fs [80/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheres_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/spheres_fs.h spheres_fs [81/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheres_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/spheres_vs.h spheres_vs [82/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/sphere_ao_depth_vs.h sphere_ao_depth_vs [83/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs [84/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs [85/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/sphere_ao_bake_fs.h sphere_ao_bake_fs [86/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs [87/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs [88/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs [89/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering && /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering/textlabelbase_vs.h textlabelbase_vs [90/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp:28:33: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.201883].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp: In member function ‘Avogadro::Rendering::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp:28:33: note: ‘’ declared here 28 | Array verts(numVerts); | ^ [91/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp:23:39: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.203267].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp: In member function ‘Avogadro::Rendering::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp:23:39: note: ‘’ declared here 23 | Core::Array verts(numVerts); | ^ [92/647] /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -MF avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o.d -o avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:13, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp:8: In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp:138:21: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM [(struct DenseStorage *)&position + 16B]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp: In member function ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp:133:15: note: ‘MEM [(struct DenseStorage *)&position + 16B]’ was declared here 133 | Vector3 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o -MF avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o.d -o avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp: In member function ‘void Avogadro::QuantumIO::ORCAOutput::processLine(std::istream&, Avogadro::Core::GaussianSet*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:653:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | while (idx < orcaOrbitals.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:656:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 656 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:662:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 662 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:732:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 732 | while (idx < orcaOrbitals.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:735:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 735 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:741:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 741 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:118:9: warning: variable ‘vibScaling’ set but not used [-Wunused-but-set-variable] 118 | float vibScaling = 1.0f; | ^~~~~~~~~~ [100/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:46:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert1].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:51:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert2].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ [101/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/dc9315d0741e1bddf1f28ab034c7309debb4e5af198cae495360b62fa4133f71.d [102/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/ui_customelementdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.ui [103/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/ui_insertfragmentdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.ui [104/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui && /usr/lib64/qt5/bin/rcc --name qtgui --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/qrc_qtgui.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/qtgui.qrc [105/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.cpp [106/647] /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o -MF avogadro/qtgui/CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o.d -o avogadro/qtgui/CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/backgroundfileformat.cpp [107/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:9: In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:119:35: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:112:25: note: ‘vert’ declared here 112 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:119:35: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:112:25: note: ‘vert’ declared here 112 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:122:35: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:113:25: note: ‘vert2’ declared here 113 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CylinderGeometry::update()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:122:35: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp: In member function ‘Avogadro::Rendering::CylinderGeometry::update()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp:113:25: note: ‘vert2’ declared here 113 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ [108/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:6: In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:63:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:59:23: note: ‘vert1’ declared here 59 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:63:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:59:23: note: ‘vert1’ declared here 59 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:69:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:65:23: note: ‘vert2’ declared here 65 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:69:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:65:23: note: ‘vert2’ declared here 65 | ColorNormalVertex vert2; | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:253, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:12: In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:97:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous]’ was declared here 87 | Vector3f previous; | ^~~~~~~~ In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:97:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 4]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous + 4]’ was declared here 87 | Vector3f previous; | ^~~~~~~~ In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 2, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:97:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous + 8]’ was declared here 87 | Vector3f previous; | ^~~~~~~~ [109/647] /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/colorbutton.cpp.o -MF avogadro/qtgui/CMakeFiles/QtGui.dir/colorbutton.cpp.o.d -o avogadro/qtgui/CMakeFiles/QtGui.dir/colorbutton.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.cpp [110/647] /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/containerwidget.cpp.o -MF avogadro/qtgui/CMakeFiles/QtGui.dir/containerwidget.cpp.o.d -o avogadro/qtgui/CMakeFiles/QtGui.dir/containerwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.cpp [111/647] /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/node.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/node.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/node.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.cpp [151/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/glrenderer.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/glrenderer.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/glrenderer.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.cpp [152/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/linestripgeometry.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/linestripgeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/linestripgeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.cpp [153/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/meshgeometry.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/meshgeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/meshgeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:6: In member function ‘Avogadro::Rendering::MeshGeometry::PackedVertex::PackedVertex(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Core::Array::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:250:22, inlined from ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:241:25: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:25:10: warning: ‘MEM[(const struct PackedVertex &)&D.271366].padding’ may be used uninitialized [-Wmaybe-uninitialized] 25 | struct PackedVertex | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp: In member function ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:241:71: note: ‘’ declared here 241 | m_vertices.push_back(PackedVertex(tmpColor, *(nIter++), *(vIter++))); | ^ In member function ‘Avogadro::Rendering::MeshGeometry::PackedVertex::PackedVertex(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Core::Array::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:250:22, inlined from ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:263:25: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:25:10: warning: ‘MEM[(const struct PackedVertex &)&D.271416].padding’ may be used uninitialized [-Wmaybe-uninitialized] 25 | struct PackedVertex | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp: In member function ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:263:71: note: ‘’ declared here 263 | m_vertices.push_back(PackedVertex(tmpColor, *(nIter++), *(vIter++))); | ^ In member function ‘Avogadro::Rendering::MeshGeometry::PackedVertex::PackedVertex(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::MeshGeometry::PackedVertex*, Avogadro::Rendering::MeshGeometry::PackedVertex const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::Core::Array::push_back(Avogadro::Rendering::MeshGeometry::PackedVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:250:22, inlined from ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:217:25: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:25:10: warning: ‘MEM[(const struct PackedVertex &)&D.266632].padding’ may be used uninitialized [-Wmaybe-uninitialized] 25 | struct PackedVertex | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp: In member function ‘Avogadro::Rendering::MeshGeometry::addVertices(Avogadro::Core::Array > const&, Avogadro::Core::Array > const&, Avogadro::Core::Array > const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp:217:73: note: ‘’ declared here 217 | m_vertices.push_back(PackedVertex(*(cIter++), *(nIter++), *(vIter++))); | ^ [154/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.cpp [155/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp:20:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.204296].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp: In member function ‘Avogadro::Rendering::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp:20:26: note: ‘’ declared here 20 | Array verts(4); | ^ [156/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp:16:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.202983].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp: In member function ‘Avogadro::Rendering::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp:16:26: note: ‘’ declared here 16 | Array verts(5); | ^ [157/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.cpp [158/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/scene.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/scene.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/scene.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.cpp [159/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.cpp [160/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/solidpipeline.cpp.o -MF 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textlabel2d.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/textlabel2d.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/textlabel2d.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel2d.cpp [162/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer 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-Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=avogadro/calc/CMakeFiles/Calc.dir/link.d -shared -Wl,-soname,libAvogadroCalc.so.1 -o lib/libAvogadroCalc.so.1.99.0 avogadro/calc/CMakeFiles/Calc.dir/chargemodel.cpp.o 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -MF utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o.d -o utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/bodr/bodrparse.cxx [180/647] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=avogadro/qtgui/CMakeFiles/QtGui.dir/link.d -shared -Wl,-soname,libAvogadroQtGui.so.1 -o lib/libAvogadroQtGui.so.1.99.0 avogadro/qtgui/CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/colorbutton.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/containerwidget.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/customelementdialog.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/elementdetail_p.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/elementitem_p.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/elementtranslator.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/extensionplugin.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/fileformatdialog.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/generichighlighter.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/hydrogentools.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/interfacescript.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/interfacewidget.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/jsonwidget.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/layermodel.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/rwlayermanager.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/meshgenerator.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/molecule.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/moleculemodel.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/multiviewwidget.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/periodictableview.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/pythonscript.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/rwmolecule.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/sceneplugin.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/scriptloader.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/toolplugin.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/utilities.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/viewfactory.cpp.o avogadro/qtgui/CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: lib/libAvogadroIO.so.1.99.0 lib/libAvogadroCore.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.17 /usr/lib64/libQt5Gui.so.5.15.17 /usr/lib64/libQt5Core.so.5.15.17 && : [181/647] /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -MF avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o.d -o avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.cpp [182/647] /usr/bin/cmake -E cmake_symlink_library lib/libAvogadroQtGui.so.1.99.0 lib/libAvogadroQtGui.so.1 lib/libAvogadroQtGui.so && : [183/647] /usr/bin/g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -MF utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o.d -o utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/resdata/resdataparse.cxx [184/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/82fc7cd95861f4d72c90d3e4a06f3e35fba1b0725b4a9ffc695f310657e36f54.d [185/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/572c420b085d41f34824cf37a8d28b19660c2f7dfa15bfed8e6a39837de760a4.d [186/647] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=avogadro/quantumio/CMakeFiles/QuantumIO.dir/link.d -shared -Wl,-soname,libAvogadroQuantumIO.so.1 -o lib/libAvogadroQuantumIO.so.1.99.0 avogadro/quantumio/CMakeFiles/QuantumIO.dir/gamessus.cpp.o avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericoutput.cpp.o avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: lib/libAvogadroIO.so.1.99.0 lib/libAvogadroCore.so.1.99.0 && : [187/647] /usr/bin/cmake -E cmake_symlink_library lib/libAvogadroQuantumIO.so.1.99.0 lib/libAvogadroQuantumIO.so.1 lib/libAvogadroQuantumIO.so && : [188/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/5e742a38c1902f22b307d4889ca7ddff8c4f0bbb92cf1e1f3743aed9430f346d.d [189/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/ui_inputgeneratordialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.ui [190/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/ui_inputgeneratorwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.ui [191/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/8bca24aa7d0a72423d060dc50c3a156a1ef3f92e3bffc69727a87974edd02e1a.d [192/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/ui_molequeuedialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.ui [193/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/ui_molequeuewidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.ui [194/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/45c696596dc3c580c4b107782a5564b76fcbf1cd62d330103e28179dbe7554aa.d [195/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/d58b365587d1d015cbfb1476f67069090d73adf432900cf0342d5b1278ed9ff9.d [196/647] /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o -MF avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o.d -o avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/mocs_compilation.cpp [197/647] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=avogadro/rendering/CMakeFiles/Rendering.dir/link.d -shared -Wl,-soname,libAvogadroRendering.so.1 -o lib/libAvogadroRendering.so.1.99.0 avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/arrowgeometry.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/beziergeometry.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/bufferobject.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/drawable.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/geometrynode.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/geometryvisitor.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/groupnode.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/glrenderer.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/glrendervisitor.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/linestripgeometry.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/meshgeometry.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/node.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/scene.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/shaderprogram.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/solidpipeline.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/spheregeometry.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/textlabel2d.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/textlabel3d.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/textlabelbase.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/textproperties.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/texture2d.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/transformnode.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/visitor.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/volumegeometry.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: lib/libAvogadroCore.so.1.99.0 /usr/lib64/libGLEW.so /usr/lib64/libGLX.so /usr/lib64/libOpenGL.so && : [198/647] /usr/bin/cmake -E cmake_symlink_library lib/libAvogadroRendering.so.1.99.0 lib/libAvogadroRendering.so.1 lib/libAvogadroRendering.so && : [199/647] /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/batchjob.cpp.o -MF avogadro/molequeue/CMakeFiles/MoleQueue.dir/batchjob.cpp.o.d -o avogadro/molequeue/CMakeFiles/MoleQueue.dir/batchjob.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.cpp [200/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl/QtOpenGL_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 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-DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem 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avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.cpp [215/647] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/link.d -shared -Wl,-soname,libAvogadroQtOpenGL.so.1 -o lib/libAvogadroQtOpenGL.so.1.99.0 avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/glwidget.cpp.o avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: lib/libAvogadroRendering.so.1.99.0 lib/libAvogadroQtGui.so.1.99.0 lib/libAvogadroIO.so.1.99.0 lib/libAvogadroCore.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.17 /usr/lib64/libQt5Gui.so.5.15.17 /usr/lib64/libQt5Core.so.5.15.17 /usr/lib64/libQt5Widgets.so.5.15.17 /usr/lib64/libQt5Gui.so.5.15.17 /usr/lib64/libQt5Core.so.5.15.17 && : [216/647] /usr/bin/cmake -E cmake_symlink_library lib/libAvogadroQtOpenGL.so.1.99.0 lib/libAvogadroQtOpenGL.so.1 lib/libAvogadroQtOpenGL.so && : [217/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/ade341e2398914807fb7318e8398a4f47966e6a9dcd3fb47785997e03a31c03e.d [218/647] /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -MF avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o.d -o avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.cpp [219/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/a1beded36a4920621998d0ae2840f05a758c5ff194fcd4712f6004b7d3c35f1f.d [220/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/da6e8ffdadcfabf4b9f2df7d7bf5203f13146f764a0765723c3c4e079c8b8ad1.d [221/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/1ccc54d00cf524f956ac735ab48d360f0da911d321307b3b72e8edf34b795835.d [222/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/981ace6e11d137429585d77fd0a24bfe1488e3545e66884d3e56a1a0ed854c7d.d [223/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/342977f1ec9c45083c249e4069853dac32728bf68360db370df0cfede0fb1c8d.d [224/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/ff16dcc8fb9f8f09e93e6476439171b7df3cc477504cdc02b9b8e5d6f82a98d8.d [225/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/d7e4ce4b3e37daf024c14f972bf44625a0d1f75e32c9044a903db08b308539ec.d [226/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/177b8735e410338f33feffde558e56254aa467cac6341aaedd1900017f16a0f0.d [227/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/1d1012b8094fd38572ee9ec9b0205026f8e0ff499be65cba380df83bcf332896.d [228/647] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=avogadro/molequeue/CMakeFiles/MoleQueue.dir/link.d -shared -Wl,-soname,libAvogadroMoleQueue.so.1 -o lib/libAvogadroMoleQueue.so.1.99.0 avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o avogadro/molequeue/CMakeFiles/MoleQueue.dir/batchjob.cpp.o avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/client.cpp.o avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: lib/libAvogadroQtGui.so.1.99.0 lib/libAvogadroIO.so.1.99.0 lib/libAvogadroCore.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.17 /usr/lib64/libQt5Gui.so.5.15.17 /usr/lib64/libQt5Core.so.5.15.17 /usr/lib64/libQt5Widgets.so.5.15.17 /usr/lib64/libQt5Gui.so.5.15.17 /usr/lib64/libQt5Network.so.5.15.17 /usr/lib64/libQt5Core.so.5.15.17 && : [229/647] /usr/bin/cmake -E cmake_symlink_library lib/libAvogadroMoleQueue.so.1.99.0 lib/libAvogadroMoleQueue.so.1 lib/libAvogadroMoleQueue.so && : [230/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/68b6fcd4d8ded45c647974ec19c2e4edaa60b2be6dd1afd75621cac3c33e59bb.d [231/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/af064a97bcef825d0b22ff0124c13786ec967acf063b05c24c1e4e001a1f671b.d [232/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/ab9213759766be031412863b07715c6515bfa1e5521d6d5ebb5ca73e22f7c230.d [233/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/5787395468c62dad790cfbc6d6cbc622b34648f709814807d3fef53a655d1209.d [234/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/7a56de44c0f8feae3a2af90482c045332808089d12757420c8f550c56bf71854.d [235/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/c75a0900d09a542695b1616f0f591ff488b762d1fff4225feafb73b4ad164308.d [236/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/e285718c35ca886473e9fc3cd1cef07592b0b28056062d195d871113d4e49bdf.d [237/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/08ce69a16c3ed3d9473c56fc45b68ef002cd66b9ff9e03955cea4a9328d0120a.d [238/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/6c9aab3d319d534123ba1a1c7b81283cd57361428a4fbf80b17d2782272fabff.d [239/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/06c4d7117af01eeeae66062f99223caa08539011793781f50e8de9e5f787cc68.d [240/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/apbs_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/841af16d994c03339eca92a5836aeff99a5f5f80cc8b79d67184b2586ed62d9d.d [241/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ui_3dmoldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmoldialog.ui [242/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ui_chargedialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors/chargedialog.ui [243/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool && /usr/lib64/qt5/bin/rcc --name aligntool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/qrc_aligntool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.qrc [244/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool && /usr/lib64/qt5/bin/rcc --name bondcentrictool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.qrc [245/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/ui_bondingdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding/bondingdialog.ui [246/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/85d3fd3dfba8899627683c6b01cc757131f5b6e461cd87b145255213f955d57d.d [247/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/d55b9187d103fc0715d83d225a748e59d22030be20890d1602726215dcf4e8c4.d [248/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ui_condadialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/condadialog.ui [249/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/c3605a480d43ebcc652a599549665754c8c30984617c1a26eb7bcf0711511f74.d [250/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/configurepython/ui_configurepythondialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepythondialog.ui [251/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/aec4060124ba8110eb5c342eb0320b67f665f4eeaec5467a3dc73a5aa024fd9d.d [252/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/599fbb61627a9698b99f9fe11ba704b78d61857808c0e9735ba82968fd04a40c.d [253/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/ui_importcrystaldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/importcrystaldialog.ui [254/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/ui_supercelldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/supercelldialog.ui [255/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/ui_unitcelldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/unitcelldialog.ui [256/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/ui_volumescalingdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/volumescalingdialog.ui [257/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/ui_editortoolwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editortoolwidget.ui [258/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/rcc --name editor --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/editor/qrc_editor.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editor.qrc [259/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/5add6bd2ac1770bc397b4fe5c626c20e166caec9bc938c6887c3b319b4e97636.d AutoMoc warning --------------- "SRC:/avogadro/qtplugins/forcefield/obenergy.cpp" includes the moc file "obenergy.moc", but does not contain a Q_OBJECT, Q_GADGET, Q_NAMESPACE or Q_NAMESPACE_EXPORT macro. AutoMoc warning --------------- "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp" includes the moc file "obmmenergy.moc", but does not contain a Q_OBJECT, Q_GADGET, Q_NAMESPACE or Q_NAMESPACE_EXPORT macro. AutoMoc: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:0: Note: No relevant classes found. No output generated. AutoMoc: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:0: Note: No relevant classes found. No output generated. [260/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/d8482da06fcee00decb20d2f0d9f614558cdfe93f347bcf509448b56b17b0f40.d [261/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/bcf36973764f708db55f0f4f159f1751194f0faea8d467e89015e074061c8fae.d [262/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/importpqr/ui_pqrwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrwidget.ui [263/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertdna/ui_insertdnadialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna/insertdnadialog.ui [264/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/2afcef78038331021296fdae7f6dfdec4ced8164c8995c24fce4c97c16e14755.d [265/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/lib64/qt5/bin/rcc --name label --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/qrc_label.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.qrc [266/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'moreButton' is not a valid widget. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'previewText' is not a valid widget. [267/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/lineformatinput/ui_lineformatinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.ui [268/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/ui_manipulatewidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulatewidget.ui [269/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator && /usr/lib64/qt5/bin/rcc --name manipulator --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulator.qrc [270/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool && /usr/lib64/qt5/bin/rcc --name measuretool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.qrc [271/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator && /usr/lib64/qt5/bin/rcc --name navigator --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator/qrc_navigator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator/navigator.qrc [272/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/987edc611b7617ba6a8b9454e737acb0cf79ae853d8b7290e5b891ebc4e9f61e.d [273/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/ui_conformersearchdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/conformersearchdialog.ui [274/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/ui_obforcefielddialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obforcefielddialog.ui [275/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openmminput/ui_openmminputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminputdialog.ui [276/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool && /usr/lib64/qt5/bin/rcc --name playertool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/playertool/qrc_playertool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool/playertool.qrc [277/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/285e8c99472c03cd49a67b14196fe8b9f7af7e6ea03c49c6893293ec457fb133.d [278/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/a7c20f6dc5c8c947256c79a5063ae76bbcc87b7b282bae1b36da5bb17ea540c5.d [279/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/5a56be152c13b6147bbd8a3de0b2c571c2fb63c23302a82dbf2fc56f14331a00.d [280/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/809de07c3fa522c5b3d27f4c796fa2842bc0b7bce136605646b8f1829ee0b7ed.d [281/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/label/Label_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/d62a270c56e34668a23181ead7a5a2a08a4cea9777e41f1aac48f43d74d89549.d [282/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/ui_selectiontoolwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui: Warning: The name 'label' (QLabel) is already in use, defaulting to 'label1'. [283/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/rcc --name selectiontool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.qrc [284/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/536bb27b803e377ec57f63f0975e0ca8fea4be6c5d878dab4cfa02973a50b011.d [285/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/surfaces/ui_surfacedialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfacedialog.ui [286/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/ui_templatetoolwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.ui [287/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool && /usr/lib64/qt5/bin/rcc --name template --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/qrc_template.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/template.qrc [288/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/ui_vibrationdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationdialog.ui [289/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/fcad81c23f9eec6e1ff4eadad2c240be729bca5943eccd2f759ccb48bc6ff112.d [290/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/ui_apbsdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsdialog.ui [291/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/apbs/ui_apbsoutputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsoutputdialog.ui [292/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/ui_coordinateeditordialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui [293/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cp2kinput/ui_cp2kinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.ui [294/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/ui_forcefielddialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefielddialog.ui [295/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.ui [296/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/68c2e2336e80d1f5d163386d4817d4b5288043e3af1eb612841098d01160a0a2.d [297/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/ui_molecularpropertiesdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.ui [298/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/bfd0ead3865acf4cddd04282bc904cd9f61b8de0f16f2e738076769194b73e4d.d [299/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/select/Select_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/bdb8ef7d34b0d5d56f9b29088a9b40b285d9332ec7ee7c9c3857e6aa3927e72a.d [300/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/37e6378454504b99e206639da6a79d4a0e13fe3be9f1cf8040a3d1b2c8144af8.d [301/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/51ecc6b44649ca34387336f9e0f0476c5365aa6e76483be084bba8234374e0ca.d [302/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/1393cdb8d54f6a5730b0ebd5a0ec791589771dac530f755a23382b99b039c03e.d [303/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/ui_downloaderwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.ui [304/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/c7b5074d8cf72c942a356b223c123e5caa62ad8eda57ec97baf3a02096784cc3.d [305/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/897e6bec3bcea98bfad76d2287cfd100ccaf2b626db4b3c56adb61b86c8e357a.d [306/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/ballandstick/BallStick_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/84a1a56f47f72027c8c8ac7a1f3f0cafdde7cf95b58b5019dea9c6afe25f1713.d [307/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/force/Force_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/e5b89d92c95640737b3f7a44b333b8d8de925a2d6bad5101092395684798b8db.d [308/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/345a6102968f9b61b8e5a2b2b3f32ad2a58e09cec954f388240ce36741ba8584.d [309/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/cd93d96f10c18c6c5e6567f7744209a7ee7f3e14dbd647f886c8639841fdd655.d [310/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/be1b33b724de5f7e98dee531b2243ae5378d654d7681a9fb7803a226dc5f38e7.d [311/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/d819c3576fac1851fb32734977bba89087c1e25aa4b71d998a803a53f637bb1f.d [312/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/4c0ddd348849295cf395b5c4b72f784f724e2a8684bdd41c0a2216d6ebe8dc2a.d [313/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/6675a17f8e63568fc293515b0b9d04cf3bcc8159a7956149d1f5dca07dedbe3d.d [314/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/a84f18bc7600ceb866407976168f07420845b0cfcb196b4118ce90cb306039df.d [315/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/05b1191c1ea56e2c2ee271bd06812e5c063a64626cf6d7b14ea9c8b889a89782.d [316/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/1875a4e23d6d20e3d1d3bdc2e1a605a08c0e4e0ef004a59701ce05d31f6f15fc.d [317/647] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/deps /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/CMakeFiles/d/c0d12f27ec22e7d4c65afdfe243174a5ab774ff3677f87ab6d969be32c961662.d [318/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp [319/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -MF avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o.d -o avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmol.cpp [320/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -MF avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o.d -o avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp [321/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp [322/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/applycolors 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-mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -MF avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o.d -o avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp [329/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp [330/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/aligntool.cpp.o -MF avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/aligntool.cpp.o.d -o avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/aligntool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h: In constructor ‘Avogadro::QtPlugins::AlignTool::AlignTool(QObject*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:89:20: warning: ‘Avogadro::QtPlugins::AlignTool::m_toolWidget’ will be initialized after [-Wreorder] 89 | mutable QWidget* m_toolWidget; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:83:26: warning: ‘Avogadro::Rendering::GLRenderer* Avogadro::QtPlugins::AlignTool::m_renderer’ [-Wreorder] 83 | Rendering::GLRenderer* m_renderer; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:48:1: warning: when initialized here [-Wreorder] 48 | AlignTool::AlignTool(QObject* parent_) | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:87:7: warning: ‘Avogadro::QtPlugins::AlignTool::m_alignType’ will be initialized after [-Wreorder] 87 | int m_alignType; | ^~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:86:7: warning: ‘int Avogadro::QtPlugins::AlignTool::m_axis’ [-Wreorder] 86 | int m_axis; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:48:1: warning: when initialized here [-Wreorder] 48 | AlignTool::AlignTool(QObject* parent_) | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘void Avogadro::QtPlugins::AlignTool::alignAtomToAxis(Avogadro::Index, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:167:11: warning: variable ‘align’ set but not used [-Wunused-but-set-variable] 167 | Vector3 align = m_molecule->atom(atomIndex).position3d(); | ^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:171:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 171 | double alpha, beta, gamma; | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:14, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:11: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::AlignTool::shiftAtomToOrigin(unsigned long)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:156:47: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.482356].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::shiftAtomToOrigin(unsigned long)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:156:47: note: ‘’ declared here 156 | Core::Array newCoords(coords.size()); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:528:13, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:519:1, inlined from ‘Avogadro::QtPlugins::AlignTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:280:55: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.484030].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::draw(Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:280:54: note: ‘’ declared here 280 | QVector positions(m_atoms.size(), Vector3()); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:169:47: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.482381].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:169:47: note: ‘’ declared here 169 | Core::Array newCoords(coords.size()); | ^ In file included from /usr/include/eigen3/Eigen/Geometry:36, from /usr/include/eigen3/Eigen/Dense:6: In member function ‘Eigen::MatrixBase >::cross >(Eigen::MatrixBase > const&) constEigen::MatrixBase >::cross_product_return_type >::type’, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:189:32: /usr/include/eigen3/Eigen/src/Geometry/OrthoMethods.h:47:31: warning: ‘MEM[(const Scalar &)&axisVector]’ may be used uninitialized [-Wmaybe-uninitialized] 47 | numext::conj(lhs.coeff(0) * rhs.coeff(1) - lhs.coeff(1) * rhs.coeff(0)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: note: ‘axisVector’ declared here 176 | Vector3 axisVector; | ^~~~~~~~~~ In member function ‘Eigen::MatrixBase >::cross >(Eigen::MatrixBase > const&) constEigen::MatrixBase >::cross_product_return_type >::type’, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:189:32: /usr/include/eigen3/Eigen/src/Geometry/OrthoMethods.h:47:61: warning: ‘MEM[(const Scalar &)&axisVector + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 47 | numext::conj(lhs.coeff(0) * rhs.coeff(1) - lhs.coeff(1) * rhs.coeff(0)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: note: ‘axisVector’ declared here 176 | Vector3 axisVector; | ^~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/src/Core/util/ConfigureVectorization.h:346, from /usr/include/eigen3/Eigen/Core:22: In function ‘_mm_loadu_pd’, inlined from ‘Eigen::internal::ploadu(Eigen::internal::unpacket_traits::type const*)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h:746:22, inlined from ‘Eigen::internal::ploadt(Eigen::internal::unpacket_traits::type const*)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:969:26, inlined from ‘Eigen::internal::evaluator > >::packet<0, double __vector(2)>(long, long) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:238:42, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::packet<0, double __vector(2)>(long, long) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:782:80, inlined from ‘Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >::packetByOuterInner<0, double __vector(2)>(long, long) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:386:54, inlined from ‘Eigen::internal::redux_vec_unroller, Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >, 0, 1>::run(Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> > const&, Eigen::internal::scalar_sum_op const&)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:177:66, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >, 3, 2>::run, Eigen::Matrix const, Eigen::Matrix const> >(Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const&)double’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:344:115, inlined from ‘Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> >::redux >(Eigen::internal::scalar_sum_op const&) constdouble’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::internal::dot_nocheck, Eigen::Matrix, false>::run(Eigen::MatrixBase > const&, Eigen::MatrixBase > const&)’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:37:51, inlined from ‘Eigen::MatrixBase >::dot >(Eigen::MatrixBase > const&) constEigen::ScalarBinaryOpTraits >::Scalar, Eigen::internal::scalar_product_op >::Scalar> >::ReturnType’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:84:58, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:186:22: /usr/lib/gcc/x86_64-redhat-linux/15/include/emmintrin.h:135:24: warning: ‘MEM[(__m128d_u * {ref-all})&axisVector]’ may be used uninitialized [-Wmaybe-uninitialized] 135 | return *(__m128d_u *)__P; | ^~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: note: ‘axisVector’ declared here 176 | Vector3 axisVector; | ^~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: In function ‘Eigen::internal::pmul(double const&, double const&)double’, inlined from ‘Eigen::internal::conj_helper::pmul(double const&, double const&) const’ at /usr/include/eigen3/Eigen/src/Core/arch/Default/ConjHelper.h:99:33, inlined from ‘Eigen::internal::scalar_conj_product_op::operator()(double const&, double const&) const’ at /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:118:62, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >, 2, 1>::run(Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >, 3, 2>::run, Eigen::Matrix const, Eigen::Matrix const> >(Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const&)double’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:346:103, inlined from ‘Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> >::redux >(Eigen::internal::scalar_sum_op const&) constdouble’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::internal::dot_nocheck, Eigen::Matrix, false>::run(Eigen::MatrixBase > const&, Eigen::MatrixBase > const&)’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:37:51, inlined from ‘Eigen::MatrixBase >::dot >(Eigen::MatrixBase > const&) constEigen::ScalarBinaryOpTraits >::Scalar, Eigen::internal::scalar_product_op >::Scalar> >::ReturnType’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:84:58, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:186:22: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:237:51: warning: ‘MEM [(struct DenseStorage *)&axisVector + 16B]’ may be used uninitialized [-Wmaybe-uninitialized] 237 | pmul(const Packet& a, const Packet& b) { return a*b; } | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: note: ‘MEM [(struct DenseStorage *)&axisVector + 16B]’ was declared here 176 | Vector3 axisVector; | ^~~~~~~~~~ [331/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp [332/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/bondcentrictool 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -MF avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o.d -o avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.cpp In file included from /usr/include/c++/15/vector:68, from /usr/include/c++/15/functional:66, from /usr/include/eigen3/Eigen/Core:85, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.cpp:6: In member function ‘std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)’, inlined from ‘Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:177:19, inlined from ‘Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.cpp:107:17: /usr/include/c++/15/bits/stl_vector.h:1167:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1167 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/vector:74: /usr/include/c++/15/bits/vector.tcc: In member function ‘Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’: /usr/include/c++/15/bits/vector.tcc:652:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)’ declared here 652 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.cpp:107:17: 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/usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o -MF avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o.d -o avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp:11: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:528:13, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:519:1, inlined from ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp:165:55: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.478151].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp: In member function ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp:165:54: note: ‘’ declared here 165 | QVector positions(m_atoms.size(), Vector3()); | ^ [412/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o -MF avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o.d -o avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/conformersearchdialog.cpp [417/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o -MF avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o.d -o avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.h: In constructor ‘Avogadro::QtPlugins::OBCharges::OBCharges(const std::string&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.h:65:15: warning: ‘Avogadro::QtPlugins::OBCharges::m_identifier’ will be initialized after [-Wreorder] 65 | std::string m_identifier; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:77: warning: base ‘Avogadro::Calc::ChargeModel’ [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:1: warning: when initialized here [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^~~~~~~~~ [418/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden 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-mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp [441/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o -MF avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o.d -o avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h: In constructor ‘Avogadro::PropertyView::PropertyView(Avogadro::PropertyType, QWidget*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h:39:20: warning: ‘Avogadro::PropertyView::m_molecule’ will be initialized after [-Wreorder] 39 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h:38:16: warning: ‘Avogadro::PropertyType Avogadro::PropertyView::m_type’ [-Wreorder] 38 | PropertyType m_type; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:37:1: warning: when initialized here [-Wreorder] 37 | PropertyView::PropertyView(PropertyType type, QWidget* parent) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp: In member function ‘virtual void Avogadro::PropertyView::selectionChanged(const QItemSelection&, const QItemSelection&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 112 | if (rowNum >= m_molecule->atomCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:117:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 117 | if (rowNum >= m_molecule->bondCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [442/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro 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avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -MF avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o.d -o avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp: In member function ‘void Avogadro::QtPlugins::SelectionToolWidget::setDropDown(size_t, size_t)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp:36:15: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 36 | if (current != m_ui->changeLayerDropDown->currentIndex()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o -MF avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o.d -o avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.h:13, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:211:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.483469].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp: In member function ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:211:26: note: ‘’ declared here 211 | Array verts(4); | ^ [453/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o -MF avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o.d -o avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp:19: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp:799:51: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.511258].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp:799:51: note: ‘’ declared here 799 | Core::Array positions(positionsf.size()); | ^ [462/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -MF avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o.d -o avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/qrc_template.cpp [463/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -MF avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o.d -o avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h: In constructor ‘Avogadro::QtPlugins::TemplateToolWidget::TemplateToolWidget(QWidget*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h:68:29: warning: ‘Avogadro::QtPlugins::TemplateToolWidget::m_elementSelector’ will be initialized after [-Wreorder] 68 | QtGui::PeriodicTableView* m_elementSelector; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h:67:32: warning: ‘Avogadro::QtGui::InsertFragmentDialog* Avogadro::QtPlugins::TemplateToolWidget::m_fragmentDialog’ [-Wreorder] 67 | QtGui::InsertFragmentDialog* m_fragmentDialog; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.cpp:48:1: warning: when initialized here [-Wreorder] 48 | TemplateToolWidget::TemplateToolWidget(QWidget* parent_) | ^~~~~~~~~~~~~~~~~~ [464/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o -MF avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o.d -o avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview/resetview.cpp [465/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -MF avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o.d -o avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp [466/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/mocs_compilation.cpp [488/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -MF avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o.d -o avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘void Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:413:15: warning: unused variable ‘index’ [-Wunused-variable] 413 | int index = tokenCursor.selectedText().toInt(&isInt); | ^~~~~ In member function ‘__ct ’, inlined from ‘QVector<(anonymous namespace)::AtomStruct>::append((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:793:13, inlined from ‘QVector<(anonymous namespace)::AtomStruct>::operator<<((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:293:13, inlined from ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:509:28: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:93:8: warning: ‘atom.atomicNumber’ may be used uninitialized [-Wmaybe-uninitialized] 93 | struct AtomStruct | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:341:16: note: ‘atom.atomicNumber’ was declared here 341 | AtomStruct atom; | ^~~~ [489/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -MF avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o.d -o avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h: In constructor ‘Avogadro::QtPlugins::OBMMEnergy::OBMMEnergy(const std::string&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:82:15: warning: ‘Avogadro::QtPlugins::OBMMEnergy::m_name’ will be initialized after [-Wreorder] 82 | std::string m_name; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:77:13: warning: ‘QProcess* Avogadro::QtPlugins::OBMMEnergy::m_process’ [-Wreorder] 77 | QProcess* m_process; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:20:1: warning: when initialized here [-Wreorder] 20 | OBMMEnergy::OBMMEnergy(const std::string& method) | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:77:13: warning: ‘Avogadro::QtPlugins::OBMMEnergy::m_process’ will be initialized after [-Wreorder] 77 | QProcess* m_process; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:75:19: warning: ‘Avogadro::Core::Molecule* Avogadro::QtPlugins::OBMMEnergy::m_molecule’ [-Wreorder] 75 | Core::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:20:1: warning: when initialized here [-Wreorder] 20 | OBMMEnergy::OBMMEnergy(const std::string& method) | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp: In member function ‘virtual Avogadro::Real Avogadro::QtPlugins::OBMMEnergy::value(const Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:225:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 225 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::OBMMEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:258:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 258 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ [493/647] /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o -MF avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o.d -o avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp [494/647] /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -MF avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o.d -o avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.h: In constructor ‘Avogadro::QtPlugins::ScriptEnergy::ScriptEnergy(const QString&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.h:91:8: warning: ‘Avogadro::QtPlugins::ScriptEnergy::m_valid’ will be initialized after [-Wreorder] 91 | bool m_valid; | ^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.h:86:10: warning: ‘Avogadro::QtPlugins::ScriptEnergy::Format Avogadro::QtPlugins::ScriptEnergy::m_inputFormat’ [-Wreorder] 86 | Format m_inputFormat; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:29:1: warning: when initialized here [-Wreorder] 29 | ScriptEnergy::ScriptEnergy(const QString& scriptFileName_) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp: In member function ‘virtual Avogadro::Real Avogadro::QtPlugins::ScriptEnergy::value(const Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:116:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 116 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::ScriptEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:149:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 149 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ [495/647] /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obenergy.cpp.o -MF avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obenergy.cpp.o.d -o avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obenergy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:7: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.h: In constructor ‘Avogadro::QtPlugins::OBEnergy::OBEnergy(const std::string&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.h:59:15: warning: ‘Avogadro::QtPlugins::OBEnergy::m_name’ will be initialized after [-Wreorder] 59 | std::string m_name; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.h:54:19: warning: ‘Avogadro::Core::Molecule* Avogadro::QtPlugins::OBEnergy::m_molecule’ [-Wreorder] 54 | Core::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:43:1: warning: when initialized here [-Wreorder] 43 | OBEnergy::OBEnergy(const std::string& method) | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::OBEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:183:12: warning: unused variable ‘energy’ [-Wunused-variable] 183 | double energy = d->m_forceField->Energy(true); | ^~~~~~ [496/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp [497/647] /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefield.cpp.o -MF avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefield.cpp.o.d -o avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefield.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::optimize()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:257:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 257 | for (Index i = 0; i < 3 * n; ++i) { | ~~^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:310:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 310 | for (size_t i = 0; i < n; ++i) { | ~~^~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:308:12: warning: variable ‘isFinite’ set but not used [-Wunused-but-set-variable] 308 | bool isFinite = true; | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::forces()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:384:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 384 | for (Index i = 0; i < 3 * n; ++i) { | ~~^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:404:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 404 | for (size_t i = 0; i < n; ++i) { | ~~^~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::freezeSelected()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:455:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::unfreezeSelected()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:469:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 469 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:26: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/avogadropython.h: At global scope: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/avogadropython.h:2:20: warning: ‘Avogadro::pythonInterpreterPath’ defined but not used [-Wunused-variable] 2 | static const char *pythonInterpreterPath = "/usr/bin/python3"; | ^~~~~~~~~~~~~~~~~~~~~ [498/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -MF avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o.d -o avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp [499/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp [500/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h: In constructor ‘Avogadro::QtPlugins::InsertFragment::InsertFragment(QObject*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:50:32: warning: ‘Avogadro::QtPlugins::InsertFragment::m_crystalDialog’ will be initialized after [-Wreorder] 50 | QtGui::InsertFragmentDialog* m_crystalDialog; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:49:32: warning: ‘Avogadro::QtGui::InsertFragmentDialog* Avogadro::QtPlugins::InsertFragment::m_moleculeDialog’ [-Wreorder] 49 | QtGui::InsertFragmentDialog* m_moleculeDialog; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* parent_) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:55:19: warning: ‘Avogadro::QtPlugins::InsertFragment::m_reader’ will be initialized after [-Wreorder] 55 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:54:20: warning: ‘Avogadro::QtGui::Molecule* Avogadro::QtPlugins::InsertFragment::m_molecule’ [-Wreorder] 54 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem 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-DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp [514/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o -MF avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o.d -o avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h:47:10, inlined from ‘std::__new_allocator::construct(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /usr/include/c++/15/bits/stl_vector.h:1421:30, inlined from ‘Avogadro::QtPlugins::SVG::getPositions()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:154:22: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&atom + 24].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp: In member function ‘Avogadro::QtPlugins::SVG::getPositions()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:152:13: note: ‘atom’ declared here 152 | SVGAtom atom(atomPositions[i].cast(), pos, i, | ^~~~ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h:47:10, inlined from ‘std::__new_allocator::construct(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from ‘std::vector >::_M_realloc_append(Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from ‘std::vector >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from ‘Avogadro::QtPlugins::SVG::getPositions()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:154:22: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&atom + 24].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp: In member function ‘Avogadro::QtPlugins::SVG::getPositions()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:152:13: note: ‘atom’ declared here 152 | SVGAtom atom(atomPositions[i].cast(), pos, i, | ^~~~ [515/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro 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-Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -MF avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o.d -o avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp [516/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp [518/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -MF avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o.d -o avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput/quantuminput.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:11: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui/avogadropython.h:2:20: warning: ‘Avogadro::pythonInterpreterPath’ defined but not used [-Wunused-variable] 2 | static const char *pythonInterpreterPath = "/usr/bin/python3"; | ^~~~~~~~~~~~~~~~~~~~~ [519/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -MF avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o.d -o avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp [520/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp [521/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -MF avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o.d -o avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptcharges.cpp [522/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -MF avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o.d -o avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp [523/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -MF avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o.d -o avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h: In constructor ‘Avogadro::QtPlugins::ScriptChargeModel::ScriptChargeModel(const QString&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:86:8: warning: ‘Avogadro::QtPlugins::ScriptChargeModel::m_electrostatics’ will be initialized after [-Wreorder] 86 | bool m_electrostatics; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:82:10: warning: ‘Avogadro::QtPlugins::ScriptChargeModel::Format Avogadro::QtPlugins::ScriptChargeModel::m_inputFormat’ [-Wreorder] 82 | Format m_inputFormat; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:28:1: warning: when initialized here [-Wreorder] 28 | ScriptChargeModel::ScriptChargeModel(const QString& scriptFileName_) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp: In member function ‘virtual Avogadro::MatrixX Avogadro::QtPlugins::ScriptChargeModel::partialCharges(Avogadro::Core::Molecule&) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 95 | for (unsigned int i = 0; i < lines.size(); ++i) { | ~~^~~~~~~~~~~~~~ [524/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include 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-DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp [547/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o -MF avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o.d -o avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp:86:53: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.392768].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp: In member function ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp:86:53: note: ‘’ declared here 86 | Core::Array colorsRGB(colors.size()); | ^ [548/647] /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -MF avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o.d -o avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:14, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.468752].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: note: ‘’ declared here 145 | Array vertices(numVertices); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/15/bits/stl_construct.h:133:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:470:17, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:571:37, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/15/bits/stl_uninitialized.h:727:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/15/bits/stl_vector.h:1999:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/15/bits/stl_vector.h:602:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.468754].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: note: ‘’ declared here 146 | Array normals(numVertices); | ^ [559/647] /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -MF avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o.d -o avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimextension.cpp [560/647] /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -MF avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o.d -o avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp [561/647] /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -MF avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o.d -o avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::r8_f(double, double*, double*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:267:23: warning: ‘MEM[(double &)&gradient + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 267 | yp[2] = gradient(2) / normGradient; | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:196:23: note: ‘MEM[(double &)&gradient + 16]’ was declared here 196 | Matrix gradient; | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::integrate(QVector3D)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:151:40: warning: ‘abserr’ may be used uninitialized [-Wmaybe-uninitialized] 151 | flag = QTAIMODEIntegrator::r8_rkf45(NEQN, y, yp, &t, t_out, &relerr, abserr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | flag); | ~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:53:9: note: ‘abserr’ was declared here 53 | qreal abserr; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:56:10: warning: ‘n_step’ may be used uninitialized [-Wmaybe-uninitialized] 56 | qint64 n_step; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:145:69: warning: ‘t_stop’ may be used uninitialized [-Wmaybe-uninitialized] 145 | ((qreal)(n_step - i_step + 1) * t_start + (qreal)(i_step - 1) * t_stop) / | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:61:9: note: ‘t_stop’ was declared here 61 | qreal t_stop; | ^~~~~~ [562/647] /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -MF avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o.d -o avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp [563/647] /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/avogadro/calc -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/eigen3 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=avogadro/qtplugins/CMakeFiles/QtPlugins.dir/link.d -shared -Wl,-soname,libAvogadroQtPlugins.so.1 -o lib/libAvogadroQtPlugins.so.1.99.0 avogadro/qtplugins/CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o avogadro/qtplugins/CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/lib: lib/avogadro2/staticplugins/ThreeDMol.a lib/avogadro2/staticplugins/ApplyColors.a lib/avogadro2/staticplugins/AlignTool.a lib/avogadro2/staticplugins/BondCentric.a lib/avogadro2/staticplugins/Bonding.a lib/avogadro2/staticplugins/Cartoons.a lib/avogadro2/staticplugins/Centroid.a lib/avogadro2/staticplugins/ConfigurePython.a lib/avogadro2/staticplugins/CopyPaste.a lib/avogadro2/staticplugins/Crystal.a lib/avogadro2/staticplugins/CrystalScene.a lib/avogadro2/staticplugins/CustomElements.a lib/avogadro2/staticplugins/Editor.a lib/avogadro2/staticplugins/FetchPDB.a lib/avogadro2/staticplugins/Focus.a lib/avogadro2/staticplugins/Hydrogens.a lib/avogadro2/staticplugins/ImportPQR.a lib/avogadro2/staticplugins/NucleicInput.a lib/avogadro2/staticplugins/Label.a lib/avogadro2/staticplugins/LabelEditor.a lib/avogadro2/staticplugins/LammpsInput.a lib/avogadro2/staticplugins/LineFormatInput.a lib/avogadro2/staticplugins/Manipulator.a lib/avogadro2/staticplugins/MeasureTool.a lib/avogadro2/staticplugins/Navigator.a lib/avogadro2/staticplugins/NetworkDatabases.a lib/avogadro2/staticplugins/OpenBabel.a lib/avogadro2/staticplugins/OpenMMInput.a lib/avogadro2/staticplugins/PlayerTool.a lib/avogadro2/staticplugins/PLY.a lib/avogadro2/staticplugins/POVRay.a lib/avogadro2/staticplugins/PropertyTables.a lib/avogadro2/staticplugins/ResetView.a lib/avogadro2/staticplugins/Select.a lib/avogadro2/staticplugins/Selection.a lib/avogadro2/staticplugins/SpaceGroup.a lib/avogadro2/staticplugins/Surfaces.a lib/avogadro2/staticplugins/TemplateTool.a lib/avogadro2/staticplugins/Vibrations.a lib/avogadro2/staticplugins/VRML.a lib/avogadro2/staticplugins/apbs.a lib/avogadro2/staticplugins/CoordinateEditor.a lib/avogadro2/staticplugins/Cp2kInput.a lib/avogadro2/staticplugins/Forcefield.a lib/avogadro2/staticplugins/GamessInput.a lib/avogadro2/staticplugins/InsertFragment.a lib/avogadro2/staticplugins/MolecularProperties.a lib/avogadro2/staticplugins/SVG.a lib/avogadro2/staticplugins/commands.a lib/avogadro2/staticplugins/QuantumInput.a lib/avogadro2/staticplugins/ScriptCharges.a lib/avogadro2/staticplugins/ScriptFileFormats.a lib/avogadro2/staticplugins/PluginDownloader.a lib/avogadro2/staticplugins/BallStick.a lib/avogadro2/staticplugins/CloseContacts.a lib/avogadro2/staticplugins/Force.a lib/avogadro2/staticplugins/Licorice.a lib/avogadro2/staticplugins/Meshes.a lib/avogadro2/staticplugins/NonCovalent.a lib/avogadro2/staticplugins/VanDerWaals.a lib/avogadro2/staticplugins/Wireframe.a lib/avogadro2/staticplugins/OverlayAxes.a lib/avogadro2/staticplugins/QTAIMExtension.a lib/avogadro2/staticplugins/QTAIMScenePlugin.a lib/libAvogadroCalc.so.1.99.0 thirdparty/libgwavi/libgwavi.a /usr/lib64/libopenbabel.so /usr/lib64/libQt5Svg.so.5.15.17 /usr/lib64/libQt5Widgets.so.5.15.17 /usr/lib64/libQt5Gui.so.5.15.17 lib/libAvogadroMoleQueue.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.17 /usr/lib64/libQt5Gui.so.5.15.17 /usr/lib64/libQt5Network.so.5.15.17 /usr/lib64/libQt5Core.so.5.15.17 lib/libAvogadroQuantumIO.so.1.99.0 /usr/lib64/libQt5Network.so.5.15.17 /usr/lib64/libarchive.so lib/libAvogadroQtOpenGL.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.17 /usr/lib64/libQt5Gui.so.5.15.17 /usr/lib64/libQt5Core.so.5.15.17 /usr/lib64/libGLX.so /usr/lib64/libOpenGL.so /usr/lib64/libGLEW.so /usr/lib64/libQt5Concurrent.so.5.15.17 /usr/lib64/libQt5Core.so.5.15.17 lib/libAvogadroQtGui.so.1.99.0 lib/libAvogadroIO.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.17 /usr/lib64/libQt5Gui.so.5.15.17 /usr/lib64/libQt5Core.so.5.15.17 lib/libAvogadroRendering.so.1.99.0 lib/libAvogadroCore.so.1.99.0 && : /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:61:6: warning: type ‘Avogadro::QtPlugins::BasisOption’ violates the C++ One Definition Rule [-Wodr] 61 | enum BasisOption | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:59:6: note: an enum with different value name is defined in another translation unit 59 | enum BasisOption | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:63:3: note: name ‘BasisSZVGTH’ differs from name ‘BasisSTO3G’ defined in another translation unit 63 | BasisSZVGTH = 0, | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:61:3: note: mismatching definition 61 | BasisSTO3G = 0, | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:40:6: warning: type ‘Avogadro::QtPlugins::CalculateOption’ violates the C++ One Definition Rule [-Wodr] 40 | enum CalculateOption | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:37:6: note: an enum with different value name is defined in another translation unit 37 | enum CalculateOption | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:42:3: note: name ‘CalculateEnergy’ differs from name ‘CalculateSinglePoint’ defined in another translation unit 42 | CalculateEnergy = 0, | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:39:3: note: mismatching definition 39 | CalculateSinglePoint = 0, | ^ [647/647] /usr/bin/cmake -E cmake_symlink_library lib/libAvogadroQtPlugins.so.1.99.0 lib/libAvogadroQtPlugins.so.1 lib/libAvogadroQtPlugins.so && : + /usr/bin/cmake --build redhat-linux-build -j4 --verbose -t documentation Change Dir: '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 4 documentation [1/1] cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs && /usr/bin/cmake -E remove_directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/html && /usr/bin/doxygen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 102 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1244 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1549 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1862 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1878 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1952 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2057 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2266 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2308 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2315 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2561 of file '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/redhat-linux-build/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: source 'images' is not a readable file or directory... skipping. Doxygen version used: 1.14.0 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for plantuml files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback/64x64 Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback/32x32 Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/colormap Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs Reading and parsing tag files Parsing files Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energymanager.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energymanager.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h... Preprocessing /builddir/buil/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:177: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:188: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:38: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:42: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:84: warning: unbalanced grouping commands d/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjonesdata.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjonesdata.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angletools.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angletools.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper-inline.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper-inline.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomutilities.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomutilities.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h... 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Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h... Preprocessing /builddir/build/BUILD/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:77: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:84: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:91: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:103: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:110: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:117: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:124: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:131: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:138: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:116: warning: unbalanced grouping commands /avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel2d.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel2d.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel3d.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel3d.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textrenderstrategy.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textrenderstrategy.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/volumegeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/volumegeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadro/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h:24: warning: Compound Avogadro::Calc::EnergyCalculator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:21: warning: Compound Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:23: warning: Compound Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:59: warning: Compound Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:48: warning: Compound Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:47: warning: Compound Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomutilities.h:20: warning: Compound Avogadro::Core::AtomUtilities is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:23: warning: Compound Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:23: warning: Compound Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:88: warning: Compound Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:11: warning: Compound Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:19: warning: Compound Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:36: warning: Compound Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:22: warning: Compound Avogadro::Core::hBondRecord is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:22: warning: Compound Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:32: warning: Compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.h:57: warning: Compound Avogadro::Io::LammpsDataFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/vaspformat.h:51: warning: Compound Avogadro::Io::OutcarFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementdetail_p.h:24: warning: Compound Avogadro::QtGui::ElementDetail is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementitem_p.h:24: warning: Compound Avogadro::QtGui::ElementItem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:20: warning: Compound Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h:21: warning: Compound Avogadro::QtGui::HydrogenTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:19: warning: Compound Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.h:25: warning: Compound Avogadro::QtGui::PeriodicTableScene is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:671: warning: Compound Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:678: warning: Compound Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:27: warning: Compound Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:37: warning: Compound Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:15: warning: Compound Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessus.h:18: warning: Compound Avogadro::QuantumIO::GAMESSUSOutput is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:77: warning: Compound Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussiancube.h:17: warning: Compound Avogadro::QuantumIO::GaussianCube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.h:20: warning: Compound Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/genericoutput.h:18: warning: Compound Avogadro::QuantumIO::GenericOutput is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/molden.h:18: warning: Compound Avogadro::QuantumIO::MoldenFile is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.h:19: warning: Compound Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.h:19: warning: Compound Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.h:20: warning: Compound Avogadro::QuantumIO::ORCAOutput is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:14: warning: Compound Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h:14: warning: Compound Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:25: warning: Compound Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:64: warning: Compound Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:112: warning: Compound Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:16: warning: Compound Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:25: warning: Compound Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:26: warning: Compound Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:35: warning: Compound Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:38: warning: Compound Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:25: warning: Compound Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:25: warning: Compound Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:28: warning: Compound Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:42: warning: Compound Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:21: warning: Compound Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:12: warning: Compound Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:92: warning: Compound Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:17: warning: Compound Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:26: warning: Compound Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:37: warning: Compound Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:114: warning: Compound Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:103: warning: Compound Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:81: warning: Compound Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:59: warning: Compound Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:48: warning: Compound Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:92: warning: Compound Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:70: warning: Compound Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:14: warning: Compound Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:26: warning: Compound Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h:14: warning: Compound Avogadro::VTK::QVTKWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h:38: warning: Compound Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:217: warning: no matching class member found for template < Molecule_T > BondTemplate< Molecule_T >::AtomType getOtherAtom(Avogadro::Core::BondTemplate< Molecule_T >::Molecule_T::AtomType atom) const Possible candidates: 'AtomType BondTemplate< Molecule_T >::getOtherAtom(Index index) const' at line 99 of file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h 'AtomType BondTemplate< Molecule_T >::getOtherAtom(AtomType atom) const' at line 104 of file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:35: warning: Member override (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:62: warning: Member m_scene (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:63: warning: Member m_bounds[6] (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:65: warning: Member m_initialized (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:32: warning: Member points[8] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:33: warning: Member planes[4] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:44: warning: Member name() (function) of class Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:121: warning: Member name() (function) of class Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:110: warning: Member name() (function) of class Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:88: warning: Member name() (function) of class Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:66: warning: Member name() (function) of class Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:55: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:99: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:77: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h:97: warning: Member nameForModel(const std::string &identifier) const (function) of class Avogadro::Calc::ChargeManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:83: warning: Member partialCharges(Core::Molecule &mol) const =0 (function) of class Avogadro::Calc::ChargeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:35: warning: Member DefaultModel(const std::string &identifier="") (function) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:80: warning: Member m_identifier (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:81: warning: Member m_elements (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h:118: warning: Member m_mask (variable) of class Avogadro::Calc::EnergyCalculator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:42: warning: Member value(const Eigen::VectorXd &x) override (function) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:43: warning: Member gradient(const Eigen::VectorXd &x, Eigen::VectorXd &grad) override (function) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:51: warning: Member m_molecule (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:52: warning: Member m_cell (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:53: warning: Member m_radii (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:54: warning: Member m_vdw (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:55: warning: Member m_depth (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:56: warning: Member m_exponent (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:58: warning: Member m_elements (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:21: warning: Member Angle (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:21: warning: Member Dihedral (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:15: warning: Member AtomHybridization (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:32: warning: Member AtomicNumber (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:381: warning: Member operator==(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:388: warning: Member operator!=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:394: warning: Member operator<(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:401: warning: Member operator>(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:407: warning: Member operator<=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:413: warning: Member operator>=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:419: warning: Member swap(Array< T > &lhs, Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h:63: warning: Member isCustomElement(unsigned char atomicNumber) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:59: warning: Member ALAData("ALA", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HB3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:88: warning: Member CYSData("CYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "SG", 16 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:119: warning: Member ASPData("ASP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "OD2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD2", 1 }, { "HD2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "OD2" }, { "OD2", "HD2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:153: warning: Member GLUData("GLU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "OE2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "OE2" }, { "OE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:193: warning: Member PHEData("PHE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HZ", 1 }, { "HZ", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "HZ" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:223: warning: Member GLYData("GLY", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA2", 1 }, { "HA3", 1 }, { "HA3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "HA2" }, { "CA", "HA3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:246: warning: Member HISData("HIS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "ND1", 7 }, { "CD2", 6 }, { "CE1", 6 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND1" }, { "ND1", "HD1" }, { "CD2", "NE2" }, { "CD2", "HD2" }, { "CE1", "NE2" }, { "CE1", "HE1" }, { "NE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD2" }, { "ND1", "CE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:275: warning: Member ILEData("ILE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "CD1", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD13", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "CD1" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:291: warning: Member LYSData("LYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ1", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HZ3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "HZ1" }, { "NZ", "HZ2" }, { "NZ", "HZ3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:308: warning: Member LEUData("LEU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD23", 1 }, { "HD23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD1" }, { "CG", "CD2" }, { "CG", "HG" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "CD2", "HD21" }, { "CD2", "HD22" }, { "CD2", "HD23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:324: warning: Member METData("MET", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HE3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SD", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:352: warning: Member ASNData("ASN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "ND2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND2" }, { "ND2", "HD21" }, { "ND2", "HD22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:388: warning: Member PROData("PRO", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HD3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "HD2" }, { "CD", "HD3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:426: warning: Member GLNData("GLN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE21", 1 }, { "HE22", 1 }, { "HE22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE2" }, { "NE2", "HE21" }, { "NE2", "HE22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:453: warning: Member ARGData("ARG", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "NE", 7 }, { "CZ", 6 }, { "NH1", 7 }, { "NH2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE", 1 }, { "HH11", 1 }, { "HH12", 1 }, { "HH21", 1 }, { "HH22", 1 }, { "HH22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "NE", "CZ" }, { "NE", "HE" }, { "CZ", "NH1" }, { "NH1", "HH11" }, { "NH1", "HH12" }, { "NH2", "HH21" }, { "NH2", "HH22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CZ", "NH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:471: warning: Member SERData("SER", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:502: warning: Member THRData("THR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG1", 8 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG1", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "OG1", "HG1" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:539: warning: Member VALData("VAL", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG11", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "HG11" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:580: warning: Member TRPData("TRP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "NE1", 7 }, { "CE2", 6 }, { "CE3", 6 }, { "CZ2", 6 }, { "CZ3", 6 }, { "CH2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HE1", 1 }, { "HE3", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HH2", 1 }, { "HH2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "NE1" }, { "CD1", "HD1" }, { "CD2", "CE3" }, { "NE1", "CE2" }, { "NE1", "HE1" }, { "CE2", "CZ2" }, { "CE3", "HE3" }, { "CZ2", "HZ2" }, { "CZ3", "CH2" }, { "CZ3", "HZ3" }, { "CH2", "HH2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE3", "CZ3" }, { "CZ2", "CH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:602: warning: Member TYRData("TYR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HH", 1 }, { "HH", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "HH" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:618: warning: Member DAData("DA", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:645: warning: Member DCData("DC", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:666: warning: Member DGData("DG", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:693: warning: Member DTData("DT", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C7", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H71", 1 }, { "H72", 1 }, { "H73", 1 }, { "H73", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "C7" }, { "C7", "H71" }, { "C7", "H72" }, { "C7", "H73" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:716: warning: Member DIData("DI", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:741: warning: Member AData("A", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:768: warning: Member CData("C", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:789: warning: Member GData("G", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:816: warning: Member UData("U", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:837: warning: Member IData("I", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:864: warning: Member HEMData("HEM", { { "CHA", 6 }, { "CHB", 6 }, { "CHC", 6 }, { "CHD", 6 }, { "C1A", 6 }, { "C2A", 6 }, { "C3A", 6 }, { "C4A", 6 }, { "CMA", 6 }, { "CAA", 6 }, { "CBA", 6 }, { "CGA", 6 }, { "O1A", 8 }, { "O2A", 8 }, { "C1B", 6 }, { "C2B", 6 }, { "C3B", 6 }, { "C4B", 6 }, { "CMB", 6 }, { "CAB", 6 }, { "CBB", 6 }, { "C1C", 6 }, { "C2C", 6 }, { "C3C", 6 }, { "C4C", 6 }, { "CMC", 6 }, { "CAC", 6 }, { "CBC", 6 }, { "C1D", 6 }, { "C2D", 6 }, { "C3D", 6 }, { "C4D", 6 }, { "CMD", 6 }, { "CAD", 6 }, { "CBD", 6 }, { "CGD", 6 }, { "O1D", 8 }, { "O2D", 8 }, { "NA", 7 }, { "NB", 7 }, { "NC", 7 }, { "ND", 7 }, { "FE", 26 }, { "HHB", 1 }, { "HHC", 1 }, { "HHD", 1 }, { "HMA", 1 }, { "HMAA", 1 }, { "HMAB", 1 }, { "HAA", 1 }, { "HAAA", 1 }, { "HBA", 1 }, { "HBAA", 1 }, { "HMB", 1 }, { "HMBA", 1 }, { "HMBB", 1 }, { "HAB", 1 }, { "HBB", 1 }, { "HBBA", 1 }, { "HMC", 1 }, { "HMCA", 1 }, { "HMCB", 1 }, { "HAC", 1 }, { "HBC", 1 }, { "HBCA", 1 }, { "HMD", 1 }, { "HMDA", 1 }, { "HMDB", 1 }, { "HAD", 1 }, { "HADA", 1 }, { "HBD", 1 }, { "HBDA", 1 }, { "H2A", 1 }, { "H2D", 1 }, { "H2D", 1 } }, { { "CHA", "C1A" }, { "CHA", "HHA" }, { "CHB", "C4A" }, { "CHB", "HHB" }, { "CHC", "C4B" }, { "CHC", "HHC" }, { "CHD", "C1D" }, { "CHD", "HHD" }, { "C1A", "NA" }, { "C2A", "C3A" }, { "C2A", "CAA" }, { "C3A", "CMA" }, { "C4A", "NA" }, { "CMA", "HMA" }, { "CMA", "HMAA" }, { "CMA", "HMAB" }, { "CAA", "CBA" }, { "CAA", "HAA" }, { "CAA", "HAAA" }, { "CBA", "CGA" }, { "CBA", "HBA" }, { "CBA", "HBAA" }, { "CGA", "O2A" }, { "O2A", "H2A" }, { "C1B", "C2B" }, { "C1B", "NB" }, { "C2B", "CMB" }, { "C3B", "C4B" }, { "C3B", "CAB" }, { "CMB", "HMB" }, { "CMB", "HMBA" }, { "CMB", "HMBB" }, { "CAB", "HAB" }, { "CBB", "HBB" }, { "CBB", "HBBA" }, { "C1C", "C2C" }, { "C1C", "NC" }, { "C2C", "CMC" }, { "C3C", "C4C" }, { "C3C", "CAC" }, { "C4C", "NC" }, { "CMC", "HMC" }, { "CMC", "HMCA" }, { "CMC", "HMCB" }, { "CAC", "HAC" }, { "CBC", "HBC" }, { "CBC", "HBCA" }, { "C1D", "C2D" }, { "C2D", "CMD" }, { "C3D", "C4D" }, { "C3D", "CAD" }, { "C4D", "ND" }, { "CMD", "HMD" }, { "CMD", "HMDA" }, { "CMD", "HMDB" }, { "CAD", "CBD" }, { "CAD", "HAD" }, { "CAD", "HADA" }, { "CBD", "CGD" }, { "CBD", "HBD" }, { "CBD", "HBDA" }, { "CGD", "O2D" }, { "O2D", "H2D" }, { "FE", "NA" }, { "FE", "NB" }, { "FE", "NC" }, { "FE", "ND" } }, { { "CHA", "C4D" }, { "CHB", "C1B" }, { "CHC", "C1C" }, { "CHD", "C4C" }, { "C1A", "C2A" }, { "C3A", "C4A" }, { "CGA", "O1A" }, { "C2B", "C3B" }, { "C4B", "NB" }, { "CAB", "CBB" }, { "C2C", "C3C" }, { "CAC", "CBC" }, { "C1D", "ND" }, { "C2D", "C3D" }, { "CGD", "O1D" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:916: warning: Member HOHData("HOH", { { "O", 8 }, { "H1", 1 }, { "H1", 1 } }, { { "O", "H1" }, { "O", "H2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:923: warning: Member SO4Data("SO4", { { "S", 16 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "S", "O3" }, { "S", "O4" } }, { { "S", "O1" }, { "S", "O2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:931: warning: Member GOLData("GOL", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "HO2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H32", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "C3" }, { "C2", "H2" }, { "O2", "HO2" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:963: warning: Member EDOData("EDO", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:987: warning: Member MSEData("MSE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SE", 34 }, { "CE", 6 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SE" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SE", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1015: warning: Member NAGData("NAG", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "N2", 7 }, { "O1", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "O7", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H81", 1 }, { "H82", 1 }, { "H83", 1 }, { "HN2", 1 }, { "HO1", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "N2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "N2" }, { "C8", "H81" }, { "C8", "H82" }, { "C8", "H83" }, { "N2", "HN2" }, { "O1", "HO1" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, { { "C7", "O7" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1035: warning: Member PO4Data("PO4", { { "P", 15 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "P", "O2" }, { "P", "O3" }, { "P", "O4" } }, { { "P", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1043: warning: Member ACTData("ACT", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1060: warning: Member PEGData("PEG", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H42", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "H41" }, { "C4", "H42" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1098: warning: Member BMAData("BMA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1115: warning: Member MANData("MAN", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1132: warning: Member DMSData("DMS", { { "S", 16 }, { "O", 8 }, { "C1", 6 }, { "C2", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "S", "C1" }, { "S", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "H21" }, { "C2", "H22" }, { "C2", "H23" } }, { { "S", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1155: warning: Member ADPData("ADP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1185: warning: Member FADData("FAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4X", 6 }, { "N5", 7 }, { "C5X", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H5'2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3P" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4X" }, { "C4X", "C10" }, { "N5", "C5X" }, { "C5X", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4X", "N5" }, { "C5X", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1241: warning: Member ACEData("ACE", { { "C", 6 }, { "O", 8 }, { "CH3", 6 }, { "H", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "CH3" }, { "C", "H" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1258: warning: Member MPDData("MPD", { { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "CM", 6 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "HO2", 1 }, { "HM1", 1 }, { "HM2", 1 }, { "HM3", 1 }, { "H31", 1 }, { "H32", 1 }, { "H4", 1 }, { "HO4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H52", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "O2" }, { "C2", "CM" }, { "C2", "C3" }, { "O2", "HO2" }, { "CM", "HM1" }, { "CM", "HM2" }, { "CM", "HM3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "C5" }, { "C4", "H4" }, { "O4", "HO4" }, { "C5", "H51" }, { "C5", "H52" }, { "C5", "H53" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1276: warning: Member GLCData("GLC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1293: warning: Member ATPData("ATP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1326: warning: Member MESData("MES", { { "O1", 8 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H81", 1 } }, { { "O1", "C2" }, { "O1", "C6" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "N4", "HN4" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "S" }, { "C8", "H81" }, { "C8", "H82" }, { "S", "O3S" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1343: warning: Member TRSData("TRS", { { "C", 6 }, { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN1", 1 }, { "HN2", 1 }, { "HN3", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO2", 1 } }, { { "C", "C1" }, { "C", "C2" }, { "C", "C3" }, { "C", "N" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "N", "HN1" }, { "N", "HN2" }, { "N", "HN3" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1372: warning: Member PG4Data("PG4", { { "O1", 8 }, { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O3", 8 }, { "C5", 6 }, { "C6", 6 }, { "O4", 8 }, { "C7", 6 }, { "C8", 6 }, { "O5", 8 }, { "HO1", 1 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "H82", 1 } }, { { "O1", "C1" }, { "O1", "HO1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H41" }, { "C4", "H42" }, { "O3", "C5" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "O4" }, { "C6", "H61" }, { "C6", "H62" }, { "O4", "C7" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O5" }, { "C8", "H81" }, { "C8", "H82" }, { "O5", "HO5" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1393: warning: Member PGEData("PGE", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C6", 6 }, { "C5", 6 }, { "O3", 8 }, { "H1", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "H22", 1 }, { "H3", 1 }, { "H32", 1 }, { "H4", 1 }, { "H42", 1 }, { "HO4", 1 }, { "H6", 1 }, { "H62", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H1" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H2" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H3" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H4" }, { "C4", "H42" }, { "O4", "C6" }, { "O4", "HO4" }, { "C6", "C5" }, { "C6", "H6" }, { "C6", "H62" }, { "C5", "O3" }, { "C5", "H5" }, { "C5", "H52" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1410: warning: Member NADData("NAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H5N", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1457: warning: Member FUCData("FUC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H63", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO3", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "H61" }, { "C6", "H62" }, { "C6", "H63" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1474: warning: Member NH2Data("NH2", { { "N", 7 }, { "HN1", 1 }, { "HN1", 1 } }, { { "N", "HN1" }, { "N", "HN2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1481: warning: Member FMTData("FMT", { { "C", 6 }, { "O1", 8 }, { "O2", 8 }, { "H", 1 }, { "H", 1 } }, { { "C", "O2" }, { "C", "H" }, { "O2", "HO2" } }, { { "C", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1489: warning: Member NAPData("NAP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1539: warning: Member SEPData("SEP", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "OG", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "P" }, { "C", "OXT" }, { "OXT", "HXT" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "C", "O" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1579: warning: Member GDPData("GDP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1609: warning: Member GALData("GAL", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1626: warning: Member SF4Data("SF4", { { "FE1", 26 }, { "FE2", 26 }, { "FE3", 26 }, { "FE4", 26 }, { "S1", 16 }, { "S2", 16 }, { "S3", 16 }, { "S3", 16 } }, { { "FE1", "S2" }, { "FE1", "S3" }, { "FE1", "S4" }, { "FE2", "S1" }, { "FE2", "S3" }, { "FE2", "S4" }, { "FE3", "S1" }, { "FE3", "S2" }, { "FE3", "S4" }, { "FE4", "S1" }, { "FE4", "S2" }, { "FE4", "S3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1651: warning: Member BGCData("BGC", { { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H1", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C2", "C3" }, { "C2", "C1" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1668: warning: Member FMNData("FMN", { { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "N5", 7 }, { "C5A", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "C10" }, { "N5", "C5A" }, { "C5A", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4A", "N5" }, { "C5A", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1704: warning: Member UNKData("UNK", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CG", "HG3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1739: warning: Member CITData("CIT", { { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "C2", 6 }, { "C3", 6 }, { "O7", 8 }, { "C4", 6 }, { "C5", 6 }, { "O3", 8 }, { "O4", 8 }, { "C6", 6 }, { "O5", 8 }, { "O6", 8 }, { "HO2", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO7", 1 }, { "H41", 1 }, { "H42", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "O2" }, { "C1", "C2" }, { "O2", "HO2" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O7" }, { "C3", "C4" }, { "C3", "C6" }, { "O7", "HO7" }, { "C4", "C5" }, { "C4", "H41" }, { "C4", "H42" }, { "C5", "O4" }, { "O4", "HO4" }, { "C6", "O6" }, { "O6", "HO6" } }, { { "C1", "O1" }, { "C5", "O3" }, { "C6", "O5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1767: warning: Member EPEData("EPE", { { "N1", 7 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "O8", 8 }, { "C9", 6 }, { "C10", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "HO8", 1 }, { "H91", 1 }, { "H92", 1 }, { "H101", 1 }, { "H102", 1 }, { "H102", 1 } }, { { "N1", "C2" }, { "N1", "C6" }, { "N1", "C9" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O8" }, { "C8", "H81" }, { "C8", "H82" }, { "O8", "HO8" }, { "C9", "C10" }, { "C9", "H91" }, { "C9", "H92" }, { "C10", "S" }, { "C10", "H101" }, { "C10", "H102" }, { "S", "O3S" }, { "O3S", "HOS3" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1788: warning: Member TPOData("TPO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG2", 6 }, { "OG1", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HOP2", 1 }, { "HOP3", 1 }, { "HOP3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG2" }, { "CB", "OG1" }, { "CB", "HB" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OG1", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "P", "O1P" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1818: warning: Member PLPData("PLP", { { "N1", 7 }, { "C2", 6 }, { "C2A", 6 }, { "C3", 6 }, { "O3", 8 }, { "C4", 6 }, { "C4A", 6 }, { "O4A", 8 }, { "C5", 6 }, { "C6", 6 }, { "C5A", 6 }, { "O4P", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H2A1", 1 }, { "H2A2", 1 }, { "H2A3", 1 }, { "HO3", 1 }, { "H4A", 1 }, { "H6", 1 }, { "H5A1", 1 }, { "H5A2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C6" }, { "C2", "C2A" }, { "C2", "C3" }, { "C2A", "H2A1" }, { "C2A", "H2A2" }, { "C2A", "H2A3" }, { "C3", "O3" }, { "O3", "HO3" }, { "C4", "C4A" }, { "C4", "C5" }, { "C4A", "H4A" }, { "C5", "C5A" }, { "C6", "H6" }, { "C5A", "O4P" }, { "C5A", "H5A1" }, { "C5A", "H5A2" }, { "O4P", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C2" }, { "C3", "C4" }, { "C4A", "O4A" }, { "C5", "C6" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1840: warning: Member GTPData("GTP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "O3B", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "O3B", "PB" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1873: warning: Member SAHData("SAH", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HXT", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "C5'" }, { "C", "OXT" }, { "OXT", "HXT" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1904: warning: Member BMEData("BME", { { "C1", 6 }, { "C2", 6 }, { "O1", 8 }, { "S2", 16 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO1", 1 }, { "HO1", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "S2" }, { "C2", "H21" }, { "C2", "H22" }, { "O1", "HO1" }, { "S2", "HS2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1928: warning: Member ACYData("ACY", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "HXT", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "OXT", "HXT" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1947: warning: Member ANPData("ANP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "N3B", 7 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HNB1", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "N3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "N3B", "HNB1" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1980: warning: Member IMDData("IMD", { { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "C5", 6 }, { "HN1", 1 }, { "H2", 1 }, { "HN3", 1 }, { "H4", 1 }, { "H4", 1 } }, { { "N1", "C2" }, { "N1", "C5" }, { "N1", "HN1" }, { "C2", "H2" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "H4" }, { "C5", "H5" } }, { { "C2", "N3" }, { "C4", "C5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2003: warning: Member PCAData("PCA", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "CD", "OE" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2038: warning: Member CSOData("CSO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "SG", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "OD", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "OD" }, { "C", "OXT" }, { "OXT", "HXT" }, { "OD", "HD" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2071: warning: Member MLIData("MLI", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O6", 8 }, { "O7", 8 }, { "O8", 8 }, { "O9", 8 }, { "H11", 1 }, { "H11", 1 } }, { { "C1", "C2" }, { "C1", "C3" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O7" }, { "C3", "O9" } }, { { "C2", "O6" }, { "C3", "O8" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2091: warning: Member FESData("FES", { { "FE1", 26 }, { "FE2", 26 }, { "S1", 16 }, { "S1", 16 } }, { { "FE1", "S1" }, { "FE1", "S2" }, { "FE2", "S1" }, { "FE2", "S2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2100: warning: Member NDPData("NDP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H21N", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H41N", 1 }, { "H42N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O2N", "H21N" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "N1N", "C6N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "C5N" }, { "C4N", "H41N" }, { "C4N", "H42N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C5N", "C6N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2155: warning: Member AMPData("AMP", { { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP2", 1 }, { "HOP3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "P", "O2P" }, { "P", "O3P" }, { "P", "O5'" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "O1P" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2182: warning: Member NO3Data("NO3", { { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O2", 8 } }, { { "N", "O2" }, { "N", "O3" } }, { { "N", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2189: warning: Member PTRData("PTR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HO2P", 1 }, { "HO2P", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HO2P" }, { "O3P", "HO3P" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2211: warning: Member IPAData("IPA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H33", 1 }, { "H33", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "H31" }, { "C3", "H32" }, { "C3", "H33" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2239: warning: Member COAData("COA", { { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N7A", 7 }, { "C8A", 6 }, { "N9A", 7 }, { "C1B", 6 }, { "C2B", 6 }, { "O2B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "P3B", 15 }, { "O7A", 8 }, { "O8A", 8 }, { "O9A", 8 }, { "C4B", 6 }, { "O4B", 8 }, { "C5B", 6 }, { "O5B", 8 }, { "P1A", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "P2A", 15 }, { "O4A", 8 }, { "O5A", 8 }, { "O6A", 8 }, { "CBP", 6 }, { "CCP", 6 }, { "CDP", 6 }, { "CEP", 6 }, { "CAP", 6 }, { "OAP", 8 }, { "C9P", 6 }, { "O9P", 8 }, { "N8P", 7 }, { "C7P", 6 }, { "C6P", 6 }, { "C5P", 6 }, { "O5P", 8 }, { "N4P", 7 }, { "C3P", 6 }, { "C2P", 6 }, { "S1P", 16 }, { "H2A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H8A", 1 }, { "H1B", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H3B", 1 }, { "HOA8", 1 }, { "HOA9", 1 }, { "H4B", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "HOA2", 1 }, { "HOA5", 1 }, { "H121", 1 }, { "H122", 1 }, { "H131", 1 }, { "H132", 1 }, { "H133", 1 }, { "H141", 1 }, { "H142", 1 }, { "H143", 1 }, { "H10", 1 }, { "HO1", 1 }, { "HN8", 1 }, { "H71", 1 }, { "H72", 1 }, { "H61", 1 }, { "H62", 1 }, { "HN4", 1 }, { "H31", 1 }, { "H32", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "C4A", "N9A" }, { "C5A", "C6A" }, { "C5A", "N7A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "C8A", "N9A" }, { "C8A", "H8A" }, { "N9A", "C1B" }, { "C1B", "C2B" }, { "C1B", "O4B" }, { "C1B", "H1B" }, { "C2B", "O2B" }, { "C2B", "C3B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C3B", "O3B" }, { "C3B", "C4B" }, { "C3B", "H3B" }, { "O3B", "P3B" }, { "P3B", "O8A" }, { "P3B", "O9A" }, { "O8A", "HOA8" }, { "O9A", "HOA9" }, { "C4B", "O4B" }, { "C4B", "C5B" }, { "C4B", "H4B" }, { "C5B", "O5B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "O5B", "P1A" }, { "P1A", "O2A" }, { "P1A", "O3A" }, { "O2A", "HOA2" }, { "O3A", "P2A" }, { "P2A", "O5A" }, { "P2A", "O6A" }, { "O5A", "HOA5" }, { "O6A", "CCP" }, { "CBP", "CCP" }, { "CBP", "CDP" }, { "CBP", "CEP" }, { "CBP", "CAP" }, { "CCP", "H121" }, { "CCP", "H122" }, { "CDP", "H131" }, { "CDP", "H132" }, { "CDP", "H133" }, { "CEP", "H141" }, { "CEP", "H142" }, { "CEP", "H143" }, { "CAP", "OAP" }, { "CAP", "C9P" }, { "CAP", "H10" }, { "OAP", "HO1" }, { "C9P", "N8P" }, { "N8P", "C7P" }, { "N8P", "HN8" }, { "C7P", "C6P" }, { "C7P", "H71" }, { "C7P", "H72" }, { "C6P", "C5P" }, { "C6P", "H61" }, { "C6P", "H62" }, { "C5P", "N4P" }, { "N4P", "C3P" }, { "N4P", "HN4" }, { "C3P", "C2P" }, { "C3P", "H31" }, { "C3P", "H32" }, { "C2P", "S1P" }, { "C2P", "H21" }, { "C2P", "H22" }, { "S1P", "HS1" } }, { { "N1A", "C6A" }, { "C2A", "N3A" }, { "C4A", "C5A" }, { "N7A", "C8A" }, { "P3B", "O7A" }, { "P1A", "O1A" }, { "P2A", "O4A" }, { "C9P", "O9P" }, { "C5P", "O5P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2290: warning: Member KCXData("KCX", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "C", 6 }, { "O", 8 }, { "CX", 6 }, { "OXT", 8 }, { "OQ1", 8 }, { "OQ2", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "CX" }, { "NZ", "HZ" }, { "C", "OXT" }, { "CX", "OQ2" }, { "OXT", "HXT" }, { "OQ2", "HQ2" } }, { { "C", "O" }, { "CX", "OQ1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2308: warning: Member H4BData("H4B", { { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "C8A", 6 }, { "N5", 7 }, { "N8", 7 }, { "C6", 6 }, { "C7", 6 }, { "C9", 6 }, { "O9", 8 }, { "C10", 6 }, { "C11", 6 }, { "O10", 8 }, { "HN21", 1 }, { "HN22", 1 }, { "HN3", 1 }, { "HN5", 1 }, { "HN8", 1 }, { "H6", 1 }, { "H71", 1 }, { "H72", 1 }, { "H9", 1 }, { "HO9", 1 }, { "H10", 1 }, { "H111", 1 }, { "H112", 1 }, { "H113", 1 }, { "H113", 1 } }, { { "N1", "C8A" }, { "C2", "N2" }, { "C2", "N3" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "N5" }, { "C8A", "N8" }, { "N5", "C6" }, { "N5", "HN5" }, { "N8", "C7" }, { "N8", "HN8" }, { "C6", "C7" }, { "C6", "C9" }, { "C6", "H6" }, { "C7", "H71" }, { "C7", "H72" }, { "C9", "O9" }, { "C9", "C10" }, { "C9", "H9" }, { "O9", "HO9" }, { "C10", "C11" }, { "C10", "O10" }, { "C10", "H10" }, { "C11", "H111" }, { "C11", "H112" }, { "C11", "H113" }, { "O10", "HO0" } }, { { "N1", "C2" }, { "C4", "O4" }, { "C4A", "C8A" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2329: warning: Member SAMData("SAM", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "CE" }, { "SD", "C5'" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2361: warning: Member GNPData("GNP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "N3B", 7 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HNB3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'2", 1 }, { "H5'1", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "N3B", "PB" }, { "N3B", "HNB3" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'2" }, { "C5'", "H5'1" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2394: warning: Member FLCData("FLC", { { "CAC", 6 }, { "CA", 6 }, { "CB", 6 }, { "CBC", 6 }, { "CG", 6 }, { "CGC", 6 }, { "OA1", 8 }, { "OA2", 8 }, { "OB1", 8 }, { "OB2", 8 }, { "OG1", 8 }, { "OG2", 8 }, { "OHB", 8 }, { "HA1", 1 }, { "HA2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG2", 1 } }, { { "CAC", "CA" }, { "CAC", "OA2" }, { "CA", "CB" }, { "CA", "HA1" }, { "CA", "HA2" }, { "CB", "CBC" }, { "CB", "CG" }, { "CB", "OHB" }, { "CBC", "OB2" }, { "CG", "CGC" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CGC", "OG2" }, { "OHB", "HOB" } }, { { "CAC", "OA1" }, { "CBC", "OB1" }, { "CGC", "OG1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:194: warning: Member swap(UnitCell &lhs, UnitCell &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:7: warning: Member element_symbols[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:20: warning: Member element_names[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:47: warning: Member element_masses[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:71: warning: Member valence_electrons[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:83: warning: Member element_VDW[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:226: warning: Member element_covalent[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:267: warning: Member element_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:7: warning: Member chain_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:25: warning: Member amino_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:41: warning: Member shapely_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:57: warning: Member secondary_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2431: warning: Member residueDict (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:16: warning: Member space_group_international_number[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:55: warning: Member space_group_schoenflies[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:134: warning: Member space_group_hall_symbol[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:666: warning: Member space_group_international[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1198: warning: Member space_group_international_full[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1730: warning: Member space_group_international_short[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1822: warning: Member space_group_setting[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1884: warning: Member space_group_transforms[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:37: warning: Member begin() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:39: warning: Member end() const (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:45: warning: Member operator!=(const AngleIterator &other) (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:96: warning: Member Container (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:99: warning: Member ValueType (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:119: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:124: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:156: warning: Member data() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:158: warning: Member constData() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:160: warning: Member size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:162: warning: Member max_size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:164: warning: Member empty() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:166: warning: Member capacity() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:168: warning: Member reserve(const size_t &sz) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:174: warning: Member resize(const size_t &sz, const ValueType &t=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:180: warning: Member clear() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:186: warning: Member begin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:188: warning: Member end() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:190: warning: Member begin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:196: warning: Member end() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:202: warning: Member rbegin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:204: warning: Member rend() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:206: warning: Member rbegin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:212: warning: Member rend() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:218: warning: Member front() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:224: warning: Member front() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:226: warning: Member back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:232: warning: Member back() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:235: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:241: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:247: warning: Member push_back(const ValueType &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:253: warning: Member pop_back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:259: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:265: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:272: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:278: warning: Member erase(iterator position) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:284: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:290: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:295: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:301: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:304: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:312: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:319: warning: Member operator=(const Array &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:328: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:351: warning: Member d (variable) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:62: warning: Member Holder(const ValueType &value) (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:64: warning: Member type() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:66: warning: Member clone() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:68: warning: Member m_content (variable) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:53: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:55: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:865: warning: Member Atom(Molecule *m, Index i) (function) of class Avogadro::Core::Atom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. libs-1.99.0/avogadro/vtk/vtkglwidget.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs/mainpage.dox... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs/mainpage.dox... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Warn for undocumented namespaces... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Distributing member group documentation. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound vtkAvogadroActor... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for compound Frustrum... Generating docs for compound TypeTraits< T >... Generating docs for compound TypeTraits< char >... Generating docs for compound TypeTraits< double >... Generating docs for compound TypeTraits< float >... Generating docs for compound TypeTraits< int >... Generating docs for compound TypeTraits< short >... Generating docs for compound TypeTraits< unsigned char >... Generating docs for compound TypeTraits< unsigned int >... Generating docs for compound TypeTraits< unsigned short >... Generating docs for compound ChargeManager... Generating docs for compound ChargeModel... Generating docs for compound DefaultModel... Generating docs for compound EnergyCalculator... Generating docs for compound EnergyManager... Generating docs for compound LennardJones... Generating docs for namespace Avogadro::Core Generating docs for compound AngleIterator... Generating docs for compound Array< T >... Generating docs for compound ArraySet... Generating docs for nested compound ArraySet::Holder< ValueType >... Generating docs for nested compound ArraySet::PlaceHolder... Generating docs for compound Atom... Generating docs for compound AtomTemplate< Molecule_T >... Generating docs for compound AtomTyper< OutputType >... Generating docs for compound AtomUtilities... Generating docs for compound AvoSpglib... Generating docs for compound BasisSet... Generating docs/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:872: warning: Member Bond(Molecule *m, Index i) (function) of class Avogadro::Core::Bond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/color3f.h:84: warning: Member m_data[3] (variable) of class Avogadro::Core::Color3f is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:40: warning: Member setMolecule(const Molecule *mol) (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:41: warning: Member molecule() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:83: warning: Member specification() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:92: warning: Member resize(Index _size) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:93: warning: Member size() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:94: warning: Member coordinates() (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:95: warning: Member coordinates() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:100: warning: Member operator[](Index _index) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:101: warning: Member operator[](Index _index) const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:40: warning: Member Options (typedef) of class Avogadro::Core::CrystalTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:50: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:65: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:75: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:97: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:109: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:124: warning: Member data() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:227: warning: Member setName(const std::string &name_) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:228: warning: Member name() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:230: warning: Member setCubeType(Type type) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:231: warning: Member cubeType() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:239: warning: Member m_data (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_min (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_max (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_spacing (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:241: warning: Member m_points (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:242: warning: Member m_minValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:242: warning: Member m_maxValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:243: warning: Member m_name (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:244: warning: Member m_cubeType (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:245: warning: Member m_lock (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:194: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:37: warning: Member begin() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:39: warning: Member end() const (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:45: warning: Member operator!=(const DihedralIterator &other) (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:229: warning: Member symmetry() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:230: warning: Member atomIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:231: warning: Member atomIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:232: warning: Member moIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:233: warning: Member moIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:234: warning: Member gtoIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:235: warning: Member gtoIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:236: warning: Member cIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:237: warning: Member cIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:238: warning: Member gtoA() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:239: warning: Member gtoA() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:240: warning: Member gtoC() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:241: warning: Member gtoC() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:242: warning: Member gtoCN() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:248: warning: Member moMatrix(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:256: warning: Member moMatrix(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:264: warning: Member moEnergy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:272: warning: Member moEnergy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:280: warning: Member moOccupancy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:288: warning: Member moOccupancy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:296: warning: Member moNumber(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:304: warning: Member moNumber(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:312: warning: Member densityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:313: warning: Member spinDensityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussiansettools.h:35: warning: Member GaussianSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::GaussianSetTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:31: warning: Member addAtom(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:32: warning: Member addAtom(size_t layer, Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:33: warning: Member addAtomToActiveLayer(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:34: warning: Member removeAtom(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:35: warning: Member removeLayer(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:34: warning: Member LayerData(std::string save="") (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:49: warning: Member boolToString(bool b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:50: warning: Member stringToBool(std::string b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:51: warning: Member m_save (variable) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:229: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:230: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:303: warning: Member atomLabels() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:343: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:438: warning: Member bondLabels() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:463: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:464: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:466: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:468: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:476: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:477: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:479: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:481: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:488: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:543: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:564: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:565: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:566: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:567: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:568: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:569: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:570: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:571: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:592: warning: Member perceiveBondOrders() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:600: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:601: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:602: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:603: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:614: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:645: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:646: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:647: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:649: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:650: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:775: warning: Member frozenAtomMask() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:782: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:783: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:787: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:789: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:793: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:795: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:797: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:799: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:800: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:785: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:813: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:818: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:821: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:822: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:823: warning: Member m_atomLabels (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:824: warning: Member m_bondLabels (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:826: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:827: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:828: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:829: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:830: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:832: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:833: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:834: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:835: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:838: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:840: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:841: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:843: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:844: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:845: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:848: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:850: warning: Member m_frozenAtomMask (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:70: warning: Member MoleculeInfo(const Molecule *m) (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:76: warning: Member clear() (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:62: warning: Member mol (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:63: warning: Member visible (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:64: warning: Member locked (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:65: warning: Member enable (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:66: warning: Member settings (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:67: warning: Member layer (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:68: warning: Member loaded (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/nameatomtyper.h:26: warning: Member NameAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::NameAtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:60: warning: Member m_maxDistance (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:61: warning: Member m_binCount (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:62: warning: Member m_bins (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:63: warning: Member m_minPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:64: warning: Member m_maxPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:65: warning: Member m_cachedArray (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:66: warning: Member m_cachedIndex (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:39: warning: Member SecondaryStructure (enumeration) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:55: warning: Member Residue(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:56: warning: Member Residue(std::string &name, Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:57: warning: Member Residue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:59: warning: Member Residue(const Residue &other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:61: warning: Member operator=(Residue other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:65: warning: Member residueName() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:67: warning: Member setResidueName(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:69: warning: Member residueId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:71: warning: Member setResidueId(Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:73: warning: Member chainId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:75: warning: Member setChainId(const char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:77: warning: Member secondaryStructure() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:82: warning: Member setSecondaryStructure(const SecondaryStructure &ss) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:120: warning: Member hasAtomByIndex(Index index) const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:138: warning: Member m_residueName (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:139: warning: Member m_residueId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:140: warning: Member m_chainId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:141: warning: Member m_atomNameMap (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:142: warning: Member m_heterogen (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:143: warning: Member m_color (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:144: warning: Member m_customColorSet (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:145: warning: Member m_secondaryStructure (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:21: warning: Member ResidueData(std::string name, std::map< std::string, int > atomNames, std::vector< std::pair< std::string, std::string > > singleBonds, std::vector< std::pair< std::string, std::string > > doubleBonds) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:31: warning: Member ResidueData(const ResidueData &other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:39: warning: Member operator=(ResidueData other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:46: warning: Member residueAtoms() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:48: warning: Member residueSingleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:53: warning: Member residueDoubleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:23: warning: Member RingPerceiver(const Molecule *m=nullptr) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:27: warning: Member setMolecule(const Molecule *m) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:28: warning: Member molecule() const (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:31: warning: Member rings() (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:40: warning: Member SecondaryStructureAssigner(Molecule *m=nullptr) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:43: warning: Member assign(Molecule *mol) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:137: warning: Member slaterTypes() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:138: warning: Member zetas() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:139: warning: Member factors() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:140: warning: Member PQNs() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:141: warning: Member normalizedMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:142: warning: Member densityMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:144: warning: Member outputAll() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slatersettools.h:33: warning: Member SlaterSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::SlaterSetTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/symbolatomtyper.h:26: warning: Member SymbolAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::SymbolAtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:27: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:28: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:29: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:30: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:32: warning: Member operator=(UnitCell other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:89: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant.h:31: warning: Member Type (enumeration) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant.h:127: warning: Member operator=(const Variant &variant) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:25: warning: Member Variant(const char *v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:31: warning: Member Variant(const MatrixXf &v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:74: warning: Member setValue(bool v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:85: warning: Member setValue(char v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:96: warning: Member setValue(short v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:107: warning: Member setValue(int v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:118: warning: Member setValue(long v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:129: warning: Member setValue(float v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:140: warning: Member setValue(double v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:151: warning: Member setValue(std::string string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:162: warning: Member setValue(const char *string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:168: warning: Member setValue(void *pointer) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:179: warning: Member setValue(MatrixX matrix) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:196: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:207: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:218: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:229: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:246: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:259: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:274: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:289: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:298: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:316: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:325: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variantmap.h:29: warning: Member iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variantmap.h:30: warning: Member const_iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:26: warning: Member Parent (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:29: warning: Member value_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:30: warning: Member allocator_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:31: warning: Member reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:32: warning: Member const_reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:33: warning: Member pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:34: warning: Member const_pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:35: warning: Member iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:36: warning: Member const_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:37: warning: Member reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:38: warning: Member const_reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:39: warning: Member difference_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:40: warning: Member size_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:44: warning: Member ArrayRefContainer(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:49: warning: Member ArrayRefContainer(const ArrayRefContainer &other) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:53: warning: Member ArrayRefContainer(InputIterator first, InputIterator last) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:58: warning: Member reref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:62: warning: Member deref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:69: warning: Member ref() const (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:72: warning: Member m_ref (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:74: warning: Member data (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:39: warning: Member operator()(const std::string &s1, const std::string &s2) const noexcept (function) of struct Avogadro::Io::CaseInsensitiveComparator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:34: warning: Member operator()(const unsigned char &c1, const unsigned char &c2) const (function) of struct Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:54: warning: Member deserialize(std::istream &in, Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:55: warning: Member serialize(std::ostream &out, const Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cmsgpackformat.h:56: warning: Member m_json (variable) of class Avogadro::Io::CMsgPackFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/pdbformat.h:56: warning: Member perceiveSubstitutedCations(Core::Molecule &molecule) (function) of class Avogadro::Io::PdbFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:82: warning: Member BatchJob(const QString &scriptFilePath, QObject *parent=nullptr) (function) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:62: warning: Member InvalidBatchId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:68: warning: Member InvalidRequestId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:75: warning: Member InvalidServerId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:38: warning: Member Client(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:227: warning: Member MessageType (enumeration) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:238: warning: Member m_jsonRpcClient (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:239: warning: Member m_requests (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h:459: warning: Member InputGenerator(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h:454: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h:37: warning: Member InputGeneratorDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h:38: warning: Member InputGeneratorDialog(const QString &scriptFileName, QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:130: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:137: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:138: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.h:148: warning: Member m_value (variable) of class Avogadro::MoleQueue::JobObject is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:48: warning: Member JsonRpcClient(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:136: warning: Member m_packetCounter (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:137: warning: Member m_socket (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h:153: warning: Member done(int r) override (slot) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h:34: warning: Member MoleQueueDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.h:35: warning: Member MoleQueueManager(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:85: warning: Member data(const QModelIndex &idx, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:86: warning: Member flags(const QModelIndex &idx=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:87: warning: Member headerData(int section, Qt::Orientation orientation, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:89: warning: Member index(int row, int column, const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:91: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:92: warning: Member rowCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:93: warning: Member columnCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h:33: warning: Member MoleQueueWidget(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h:127: warning: Member batchMode() const (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:96: warning: Member Container (typedef) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:99: warning: Member ValueType (typedef) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:119: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:124: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:156: warning: Member data() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:158: warning: Member constData() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:160: warning: Member size() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:162: warning: Member max_size() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:164: warning: Member empty() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:166: warning: Member capacity() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:168: warning: Member reserve(const size_t &sz) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:174: warning: Member resize(const size_t &sz, const ValueType &t=ValueType()) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:180: warning: Member clear() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:186: warning: Member begin() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:190: warning: Member begin() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:188: warning: Member end() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:196: warning: Member end() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:202: warning: Member rbegin() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:206: warning: Member rbegin() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:204: warning: Member rend() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:212: warning: Member rend() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:218: warning: Member front() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:224: warning: Member front() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:226: warning: Member back() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:232: warning: Member back() const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:235: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:241: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:247: warning: Member push_back(const ValueType &v) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:253: warning: Member pop_back() (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:259: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:265: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:272: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:278: warning: Member erase(iterator position) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:284: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:290: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:295: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:301: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:304: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:312: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:319: warning: Member operator=(const Array &v) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:328: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:351: warning: Member d (variable) of class Avogadro::QtGui::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:37: warning: Member ColorButton(QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:38: warning: Member ColorButton(const QColor &initial, QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:41: warning: Member splitVertical() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:42: warning: Member splitHorizontal() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:43: warning: Member closeView() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:30: warning: Member ContainerWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:34: warning: Member setViewWidget(QWidget *widget) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:35: warning: Member viewWidget() (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:37: warning: Member setActive(bool active) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:38: warning: Member isActive() const (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.h:31: warning: Member CustomElementDialog(Molecule &mol, QWidget *parent=nullptr) (function) of class Avogadro::QtGui::CustomElementDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.h:44: warning: Member ExtensionPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:25: warning: Member Mode (enumeration) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:66: warning: Member setFileName(const QString &fname) (slot) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:63: warning: Member fileNameChanged(const QString &filename) (signal) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:31: warning: Member FileBrowseWidget(QWidget *theParent=nullptr) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:34: warning: Member fileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:36: warning: Member validFileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:38: warning: Member browseButton() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:39: warning: Member lineEdit() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:41: warning: Member setMode(Mode m) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:42: warning: Member mode() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.h:91: warning: Member highlightBlock(const QString &text) override (function) of class Avogadro::QtGui::GenericHighlighter is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:35: warning: Member refresh() (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:37: warning: Member filterTextChanged(const QString &) (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:39: warning: Member activated() (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:41: warning: Member currentChanged(const QModelIndex &selected, const QModelIndex &deselected) (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:45: warning: Member performInsert(const QString &fileName, bool crystal) (signal) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:28: warning: Member InsertFragmentDialog(QWidget *parent=nullptr, QString directory="molecules") (function) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:32: warning: Member fileName() (function) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:612: warning: Member finished() (signal) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:457: warning: Member InterfaceScript(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:452: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:31: warning: Member ColumnType (enumeration) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:68: warning: Member updateRows() (slot) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:40: warning: Member LayerModel(QObject *p=0) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:55: warning: Member addItem() (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:56: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:57: warning: Member addMolecule(const Molecule *mol) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:58: warning: Member setActiveLayer(int index, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:59: warning: Member removeItem(int row, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:61: warning: Member items() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:63: warning: Member flipVisible(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:64: warning: Member flipLocked(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:65: warning: Member layerCount() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:132: warning: Member duplicate(const Vector3i &c, const Vector3f &pos) (function) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:139: warning: Member m_iso (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:147: warning: Member m_normals (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:148: warning: Member m_indices (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:149: warning: Member m_progmin (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:150: warning: Member m_progmax (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:158: warning: Member a2iVertexOffset[8][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:159: warning: Member a2iEdgeConnection[12][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:160: warning: Member a2fEdgeDirection[12][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:161: warning: Member a2iTetrahedronEdgeConnection[6][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:162: warning: Member a2iTetrahedronsInACube[6][4] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:163: warning: Member aiTetrahedronEdgeFlags[16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:164: warning: Member a2iTetrahedronTriangles[16][7] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:165: warning: Member aiCubeEdgeFlags[256] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:166: warning: Member a2iTriangleConnectionTable[256][16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:52: warning: found documented return type for Avogadro::QtGui::MeshGenerator::MeshGenerator that does not return anything /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:48: warning: Member Molecule(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:97: warning: Member addAtom(unsigned char number, Vector3 position3d, Index uniqueId=MaxIndex) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:135: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:157: warning: Member addBonds(const Core::Array< std::pair< Index, Index > > &bonds, const Core::Array< unsigned char > &orders) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:230: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:232: warning: Member findAtomUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:233: warning: Member findBondUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:235: warning: Member undoMolecule() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:237: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:238: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' for compound Bond... Generating docs for compound BondTemplate< Molecule_T >... Generating docs for compound Color3f... Generating docs for compound CoordinateBlockGenerator... Generating docs for compound CoordinateSet< T >... Generating docs for compound CrystalTools... Generating docs for compound Cube... Generating docs for compound DihedralIterator... Generating docs for compound Elements... Generating docs for compound GaussianSet... Generating docs for compound GaussianSetTools... Generating docs for compound Graph... Generating docs for compound hBondRecord... Generating docs for compound Layer... Generating docs for compound LayerData... Generating docs for compound LayerManager... Generating docs for compound Mesh... Generating docs for compound Molecule... Generating docs for compound MoleculeInfo... Generating docs for compound Mutex... Generating docs for compound NameAtomTyper... Generating docs for compound NeighborPerceiver... Generating docs for compound Residue... Generating docs for compound ResidueData... Generating docs for compound RingPerceiver... Generating docs for compound SecondaryStructureAssigner... Generating docs for compound SharedMutex... Generating docs for compound SlaterSet... Generating docs for compound SlaterSetTools... Generating docs for compound SpaceGroups... Generating docs for compound SymbolAtomTyper... Generating docs for compound UnitCell... Generating docs for compound Variant... Generating docs for compound VariantMap... Generating docs for compound ArrayRefContainer< T >... Generating docs for compound CaseInsensitiveComparator... Generating docs for nested compound CaseInsensitiveComparator::lowerCaseCompare... Generating docs for compound CjsonFormat... Generating docs for compound CmlFormat... Generating docs for compound CMsgPackFormat... Generating docs for compound DcdFormat... Generating docs for compound FileFormat... Generating docs for compound FileFormatManager... Generating docs for compound GromacsFormat... Generating docs for compound Hdf5DataFormat... Generating docs for compound LammpsDataFormat... Generating docs for compound LammpsTrajectoryFormat... Generating docs for compound MdlFormat... Generating docs for compound MMTFFormat... Generating docs for compound OutcarFormat... Generating docs for compound PdbFormat... Generating docs for compound PoscarFormat... Generating docs for compound TrrFormat... Generating docs for compound TurbomoleFormat... Generating docs for compound XyzFormat... Generating docs for compound BatchJob... Generating docs for compound Client... Generating docs for compound InputGenerator... Generating docs for compound InputGeneratorDialog... Generating docs for compound InputGeneratorWidget... Generating docs for compound JobObject... Generating docs for compound JsonRpcClient... Generating docs for compound MoleQueueDialog... Generating docs for compound MoleQueueManager... Generating docs for compound MoleQueueQueueListModel... Generating docs for compound MoleQueueWidget... Generating docs for compound Array< T >... Generating docs for compound BackgroundFileFormat... Generating docs for compound ColorButton... Generating docs for compound ContainerWidget... Generating docs for compound CustomElementDialog... Generating docs for compound ElementDetail... Generating docs for compound ElementItem... Generating docs for compound ElementTranslator... Generating docs for compound ExtensionPlugin... Generating docs for compound ExtensionPluginFactory... Generating docs for compound FileBrowseWidget... Generating docs for compound FileFormatDialog... Generating docs for compound GenericHighlighter... Generating docs for nested compound GenericHighlighter::Rule... Generating docs for compound HydrogenTools... Generating docs for compound InsertFragmentDialog... Generating docs for compound InterfaceScript... Generating docs for compound InterfaceWidget... Generating docs for compound JsonWidget... Generating docs for compound LayerModel... Generating docs for compound MeshGenerator... Generating docs for compound Molecule... Gene/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:66: warning: Member setActiveMolecule(QObject *active) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:67: warning: Member addItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:68: warning: Member removeItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:69: warning: Member itemChanged() (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:63: warning: Member moleculeStateChanged(Avogadro::QtGui::Molecule *) (signal) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:40: warning: Member MoleculeModel(QObject *p=nullptr) (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:55: warning: Member clear() (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:57: warning: Member molecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:58: warning: Member activeMolecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:60: warning: Member activeMolecule() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:23: warning: Member m_molecule (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:24: warning: Member m_modelView (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:25: warning: Member m_dirty (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:26: warning: Member m_active (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:53: warning: Member splitHorizontal() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:54: warning: Member splitVertical() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:55: warning: Member createView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:56: warning: Member removeView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:50: warning: Member activeWidgetChanged(QWidget *widget) (signal) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:33: warning: Member MultiViewWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:37: warning: Member addWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:44: warning: Member setActiveWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:46: warning: Member setFactory(ViewFactory *factory) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:47: warning: Member setDefaultView(const QString &viewName) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentatom.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentatom.h:25: warning: Member AtomType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentbond.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentbond.h:25: warning: Member BondType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.h:26: warning: Member PluginLayerManager(const std::string &name="undef") (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.h:32: warning: Member atomLocked(size_t atom) const (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:139: warning: Member m_debug (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:140: warning: Member m_pythonInterpreter (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:141: warning: Member m_scriptFilePath (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:142: warning: Member m_errors (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:143: warning: Member m_process (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:675: warning: Member RWAtom(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:682: warning: Member RWBond(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:75: warning: Member molecule() (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:76: warning: Member molecule() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:226: warning: Member atomLabel(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:227: warning: Member setAtomLabel(Index atomId, const std::string &label, const QString &undoText=tr("Change Atom Label")) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:241: warning: Member setAtomPosition2d(Index, const Vector2 &) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:242: warning: Member atomPosition2d(Index) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:243: warning: Member atomPositions2d() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:298: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:299: warning: Member layer(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:656: warning: Member findAtomUniqueId(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:657: warning: Member findBondUniqueId(Index bondId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:664: warning: Member m_interactive (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:666: warning: Member m_undoStack (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:628: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:30: warning: Member UndoCommand(RWMolecule &m) (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:36: warning: Member positions3d() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:37: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:38: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:40: warning: Member m_mol (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:41: warning: Member m_molecule (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:90: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:42: warning: Member ScenePlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:51: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:80: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:87: warning: Member defaultBehavior() const (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:93: warning: Member m_layerManager (variable) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:55: warning: Member addItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:56: warning: Member removeItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:57: warning: Member itemChanged() (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:51: warning: Member pluginStateChanged(Avogadro::QtGui::ScenePlugin *) (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:52: warning: Member pluginConfigChanged() (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:30: warning: Member ScenePluginModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:32: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:33: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:34: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:36: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:38: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:40: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:42: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:45: warning: Member clear() (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:47: warning: Member scenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:48: warning: Member activeScenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h:35: warning: Member ScriptLoader(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h:44: warning: Member queryProgramName(const QString &scriptFilePath, QString &displayName) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:20: warning: Member SortFilterTreeProxyModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:25: warning: Member filterAcceptsRow(int sourceRow, const QModelIndex &sourceParent) const (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:30: warning: Member setSourceRoot(const QModelIndex &sourceRoot) (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:152: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:44: warning: Member ToolPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:181: warning: Member createInstance(QObject *parent=nullptr)=0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:182: warning: Member identifier() const =0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:27: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:28: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:29: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:30: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:32: warning: Member operator=(UnitCell other) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:89: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::QtGui::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h:105: warning: Member rendererInvalid() (signal) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h:49: warning: Member GLWidget(QWidget *parent=nullptr) (function) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:80: warning: Member GamessukOut(const QString &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:82: warning: Member GamessukOutNoQt(const std::string &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:83: warning: Member outputParsedData() (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.h:54: warning: Member outputAll() (function) of class Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:37: warning: Member outputCoord() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:38: warning: Member outputBasis() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:51: warning: Member atomLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:52: warning: Member coordinates (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:54: warning: Member shellLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:55: warning: Member shells (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:58: warning: Member gtoIndicies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:62: warning: Member gtoExponents (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:63: warning: Member gtoCoefficients (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:66: warning: Member moEnergies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:68: warning: Member moVectors (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:72: warning: Member nShell (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:73: warning: Member nBasisFunctions (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:74: warning: Member nElectrons (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:37: warning: Member AmbientOcclusionSphereGeometry(const AmbientOcclusionSphereGeometry &other) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:40: warning: Member operator=(AmbientOcclusionSphereGeometry) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:81: warning: Member spheres() const (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:38: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:41: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:35: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:28: warning: Member ArrowGeometry(const ArrowGeometry &other) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:31: warning: Member operator=(ArrowGeometry) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:50: warning: Member drawLine(const Vector3f &start, const Vector3f &end, double lineWidth) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:51: warning: Member drawCone(const Vector3f &base, const Vector3f &cap, double baseRadius, double) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:25: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h:20: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:31: warning: Member ObjectType (enumeration) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:37: warning: Member BufferObject(ObjectType type=ArrayBuffer) (function) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:44: warning: Member Camera(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:45: warning: Member operator=(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:29: warning: Member Cartoon(float minRadius, float maxRadius) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:32: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, size_t group, size_t id, Core::Residue::SecondaryStructure sec) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:30: warning: Member ELIPSE_RATIO (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:37: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:41: warning: Member computeScale(size_t index, float t, float scale) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:43: warning: Member m_type (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_minRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_maxRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:75: warning: Member ColorNormalVertex(const Vector3ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:79: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:80: warning: Member normalOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:84: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:69: warning: Member color (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:70: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:71: warning: Member normal (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:72: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:73: warning: Member padding[4] (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:48: warning: Member ColorTextureVertex(const Vector3f &p, const Vector3ub &c, const Vector2f &t, const Vector2f &t2=Vector2f::Zero()) (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:53: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:54: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:55: warning: Member textureCoordOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:60: warning: Member textureCoord2Offset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:42: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:43: warning: Member color (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:44: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:45: warning: Member textureCoord (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:46: warning: Member textureCoord2 (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:94: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:123: warning: Member position() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:124: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:126: warning: Member direction() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:127: warning: Member setDirection(const Vector3f &dir) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:129: warning: Member length() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:130: warning: Member setLength(float l) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:132: warning: Member radius() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:133: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:18: warning: Member CylinderColor(const Vector3f &pos1, const Vector3f &pos2, float r, const Vector3ub &c, const Vector3ub &c2=Vector3ub::Zero()) (function) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:27: warning: Member end1 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:28: warning: Member end2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:29: warning: Member radius (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:30: warning: Member color (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:31: warning: Member color2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:45: warning: Member CylinderGeometry(const CylinderGeometry &other) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:48: warning: Member operator=(CylinderGeometry) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:127: warning: Member cylinders() const (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:38: warning: Member DashedLineGeometry(const DashedLineGeometry &other) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:41: warning: Member operator=(DashedLineGeometry) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:33: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:34: warning: Member colorOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:29: warning: Member projection (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:30: warning: Member modelView (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:70: warning: Member drawables() const (function) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:99: warning: Member m_drawables (variable) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:38: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:39: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:40: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:41: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:42: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:43: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:44: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:45: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:46: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:47: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:48: warning: Member visit(LineStripGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:89: warning: Member camera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:93: warning: Member overlayCamera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:97: warning: Member scene() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:101: warning: Member solidPipeline() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:112: warning: Member m_perspectiveFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:113: warning: Member m_orthographicFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:30: warning: Member GLRenderVisitor(const Camera &camera=Camera(), const TextRenderStrategy *trs=nullptr) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:55: warning: Member visit(TextLabel2D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:56: warning: Member visit(TextLabel3D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:59: warning: Member setCamera(const Camera &camera_) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:38: warning: Member NodeInfo(Node *n, NodeType u) (function) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:39: warning: Member ui (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:40: warning: Member node (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:27: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:33: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:35: warning: Member isValid() const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:37: warning: Member molecule (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:38: warning: Member type (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:39: warning: Member index (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:41: warning: Member Line(float r) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:49: warning: Member add(Point *point) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:54: warning: Member points (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:55: warning: Member dirty (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:56: warning: Member flat (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:57: warning: Member radius (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:58: warning: Member vbo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:59: warning: Member ibo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:60: warning: Member numberOfVertices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:61: warning: Member numberOfIndices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:31: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:32: warning: Member colorOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:32: warning: Member PackedVertex(const Vector4ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:38: warning: Member colorOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:39: warning: Member normalOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:40: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:27: warning: Member color (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:28: warning: Member normal (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:29: warning: Member vertex (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:30: warning: Member padding[4] (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:37: warning: Member PLYVisitor(const Camera &camera) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:40: warning: Member begin() (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:41: warning: Member end() (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:55: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:56: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:59: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:62: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:63: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:64: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:30: warning: Member Point(const Vector3f &p, const Vector3ub &c, size_t i) (function) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:33: warning: Member pos (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:34: warning: Member color (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:35: warning: Member id (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:29: warning: Member POVRayVisitor(const Camera &camera) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:58: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:64: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:69: warning: Member isValid() const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:71: warning: Member molecule (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:72: warning: Member type (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:73: warning: Member index (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:108: warning: Member rootNode() const (function) of class Avogadro::Rendering::Scene is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:37: warning: Member Shader(Type type=Unknown, const std::string &source="") (function) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:70: warning: Member m_type (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:71: warning: Member m_handle (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:72: warning: Member m_dirty (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:74: warning: Member m_source (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:75: warning: Member m_error (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:23: warning: Member vertexShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:24: warning: Member fragmentShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:25: warning: Member program (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:147: warning: Member setUniformValue(const std::string &name, const Eigen::Matrix4f &matrix) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:156: warning: Member setAttributeArrayInternal(const std::string &name, void *buffer, Avogadro::Type type, int tupleSize, NormalizeOption normalize) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:159: warning: Member m_handle (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:160: warning: Member m_vertexShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:161: warning: Member m_fragmentShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:163: warning: Member m_linked (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:165: warning: Member m_error (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:167: warning: Member m_attributes (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:169: warning: Member m_textureUnitBindings (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:170: warning: Member m_boundTextureUnits (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:53: warning: Member setAoEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:59: warning: Member setAoStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:65: warning: Member setEdEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:75: warning: Member setEdStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:95: warning: Member Sphere(const Vector3f &position_, float radius_, Primitive::Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:101: warning: Member position() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:102: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:104: warning: Member radius() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:105: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:19: warning: Member SphereColor(Vector3f centre, float r, Vector3ub c) (function) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:22: warning: Member center (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:23: warning: Member radius (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:24: warning: Member color (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:43: warning: Member SphereGeometry(const SphereGeometry &other) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:46: warning: Member operator=(SphereGeometry) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:101: warning: Member spheres() const (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. rating docs for compound MoleculeModel... Generating docs for compound MoleculeSystem... Generating docs for compound MultiViewWidget... Generating docs for compound PeriodicTableScene... Generating docs for compound PeriodicTableView... Generating docs for compound PersistentAtom< Molecule_T >... Generating docs for compound PersistentBond< Molecule_T >... Generating docs for compound PluginLayerManager... Generating docs for compound PythonScript... Generating docs for compound RWAtom... Generating docs for compound RWBond... Generating docs for compound RWLayerManager... Generating docs for compound RWMolecule... Generating docs for nested compound RWMolecule::UndoCommand... Generating docs for compound ScenePlugin... Generating docs for compound ScenePluginFactory... Generating docs for compound ScenePluginModel... Generating docs for compound ScriptLoader... Generating docs for compound SortFilterTreeProxyModel... Generating docs for compound ToolPlugin... Generating docs for compound ToolPluginFactory... Generating docs for compound UnitCell... Generating docs for compound ViewFactory... Generating docs for compound ActiveObjects... Generating docs for compound GLWidget... Generating docs for compound QtTextRenderStrategy... Generating docs for compound GamessukOut... Generating docs for compound GAMESSUSOutput... Generating docs for compound GaussianCube... Generating docs for compound GaussianFchk... Generating docs for compound GenericOutput... Generating docs for compound GUKBasisSet... Generating docs for compound MoldenFile... Generating docs for compound MopacAux... Generating docs for compound NWChemJson... Generating docs for compound NWChemLog... Generating docs for compound ORCAOutput... Generating docs for compound AmbientOcclusionSphereGeometry... Generating docs for compound ArcSector... Generating docs for compound ArcStrip... Generating docs for compound ArrowGeometry... Generating docs for compound BezierGeometry... Generating docs for compound BSplineGeometry... Generating docs for compound BufferObject... Generating docs for compound Camera... Generating docs for compound Cartoon... Generating docs for compound ColorNormalVertex... Generating docs for compound ColorTextureVertex... Generating docs for compound CurveGeometry... Generating docs for compound Cylinder... Generating docs for compound CylinderColor... Generating docs for compound CylinderGeometry... Generating docs for compound DashedLineGeometry... Generating docs for nested compound DashedLineGeometry::PackedVertex... Generating docs for compound Drawable... Generating docs for compound EigenData... Generating docs for compound GeometryNode... Generating docs for compound GeometryVisitor... Generating docs for compound GLRenderer... Generating docs for compound GLRenderVisitor... Generating docs for compound GroupNode... Generating docs for nested compound GroupNode::NodeInfo... Generating docs for compound Identifier... Generating docs for compound Line... Generating docs for compound LineStripGeometry... Generating docs for nested compound LineStripGeometry::PackedVertex... Generating docs for compound MeshGeometry... Generating docs for nested compound MeshGeometry::PackedVertex... Generating docs for compound Node... Generating docs for compound PLYVisitor... Generating docs for compound Point... Generating docs for compound POVRayVisitor... Generating docs for compound Primitive... Generating docs for nested compound Primitive::Identifier... Generating docs for compound Quad... Generating docs for compound QuadOutline... Generating docs for compound Scene... Generating docs for compound Shader... Generating docs for compound ShaderInfo... Generating docs for compound ShaderProgram... Generating docs for compound SolidPipeline... Generating docs for compound Sphere... Generating docs for compound SphereColor... Generating docs for compound SphereGeometry... Generating docs for compound TextLabel2D... Generating docs for compound TextLabel3D... Generating docs for compound TextLabelBase... Generating docs for compound TextProperti/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:60: warning: Member TextProperties(const TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:63: warning: Member operator=(TextProperties other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:64: warning: Member swap(TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:66: warning: Member operator==(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:67: warning: Member operator!=(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:76: warning: Member pixelHeight() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:83: warning: Member hAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:90: warning: Member vAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:102: warning: Member rotationDegreesCW() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:109: warning: Member fontFamily() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:116: warning: Member fontStyles() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:123: warning: Member bold() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:130: warning: Member italic() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:137: warning: Member underline() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:113: warning: Member minFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:114: warning: Member setMagFilter(FilterOption opt) (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:115: warning: Member magFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:157: warning: Member release() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:159: warning: Member error() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h:25: warning: Member TransformNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::TransformNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:29: warning: Member VRMLVisitor(const Camera &camera) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:19: warning: Member ChartDialog(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:22: warning: Member chartWidget() (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:24: warning: Member sizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:25: warning: Member minimumSizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:34: warning: Member Axis (enumeration) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:31: warning: Member ChartWidget(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:40: warning: Member addPlot(const std::vector< float > &x, const std::vector< float > &y, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:43: warning: Member addSeries(const std::vector< float > &y, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:46: warning: Member addPlots(const std::vector< std::vector< float > > &plotData, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:49: warning: Member clearPlots() (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:51: warning: Member setXAxisTitle(const std::string &title) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:53: warning: Member setYAxisTitle(const std::string &title) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:55: warning: Member setTickLabels(Axis a, const std::vector< float > &tickPositions, const std::vector< std::string > &tickLabels) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:58: warning: Member setAxisLimits(Axis a, float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:59: warning: Member setXAxisLimits(float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:60: warning: Member setYAxisLimits(float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:62: warning: Member setFontSize(int size=14) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:63: warning: Member setLineWidth(float width=1.0) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:65: warning: Member setAxisLogScale(Axis a, bool logScale) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h:19: warning: Member QVTKWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::QVTKWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h:43: warning: Member vtkGLWidget(QWidget *p=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::vtkGLWidget is not documented. es... Generating docs for compound TextRenderStrategy... Generating docs for compound Texture2D... Generating docs for compound TransformNode... Generating docs for compound Visitor... Generating docs for compound VolumeGeometry... Generating docs for compound VRMLVisitor... Generating docs for compound ChartDialog... Generating docs for compound ChartWidget... Generating docs for compound QVTKWidget... Generating docs for compound vtkGLWidget... Generating graph info page... Generating directory documentation... Generating index page... Generating main page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class Avogadro::QtOpenGL::ActiveObjects Generating XML output for class Avogadro::Rendering::AmbientOcclusionSphereGeometry Generating XML output for class Avogadro::Core::AngleIterator Generating XML output for class Avogadro::Rendering::ArcSector Generating XML output for class Avogadro::Rendering::ArcStrip Generating XML output for class Avogadro::Core::Array Generating XML output for class Avogadro::QtGui::Array Generating XML output for class Avogadro::Core::internal::ArrayRefContainer Generating XML output for class Avogadro::Core::ArraySet Generating XML output for class Avogadro::Rendering::ArrowGeometry Generating XML output for class Avogadro::Core::Atom Generating XML output for class Avogadro::Core::AtomTemplate Generating XML output for class Avogadro::Core::AtomTyper Generating XML output for class Avogadro::Core::AtomUtilities Generating XML output for class Avogadro::Core::AvoSpglib Generating XML output for class Avogadro::QtGui::BackgroundFileFormat Generating XML output for class Avogadro::Core::BasisSet Generating XML output for class Avogadro::MoleQueue::BatchJob Generating XML output for class Avogadro::Rendering::BezierGeometry Generating XML output for class Avogadro::Core::Bond Generating XML output for class Avogadro::Core::BondTemplate Generating XML output for class Avogadro::Rendering::BSplineGeometry Generating XML output for class Avogadro::Rendering::BufferObject Generating XML output for class Avogadro::Rendering::Camera Generating XML output for class Avogadro::Rendering::Cartoon Generating XML output for class Avogadro::Io::CaseInsensitiveComparator Generating XML output for class Avogadro::Calc::ChargeManager Generating XML output for class Avogadro::Calc::ChargeModel Generating XML output for class Avogadro::VTK::ChartDialog Generating XML output for class Avogadro::VTK::ChartWidget Generating XML output for class Avogadro::Io::CjsonFormat Generating XML output for class Avogadro::MoleQueue::Client Generating XML output for class Avogadro::Io::CmlFormat Generating XML output for class Avogadro::Io::CMsgPackFormat Generating XML output for class Avogadro::Core::Color3f Generating XML output for class Avogadro::QtGui::ColorButton Generating XML output for class Avogadro::Rendering::ColorNormalVertex Generating XML output for class Avogadro::Rendering::ColorTextureVertex Generating XML output for class Avogadro::QtGui::ContainerWidget Generating XML output for class Avogadro::Core::CoordinateBlockGenerator Generating XML output for class Avogadro::Core::CoordinateSet Generating XML output for class Avogadro::Core::CrystalTools Generating XML output for class Avogadro::Core::Cube Generating XML output for class Avogadro::Rendering::CurveGeometry Generating XML output for class Avogadro::QtGui::CustomElementDialog Generating XML output for class Avogadro::Rendering::Cylinder Generating XML output for class Avogadro::Rendering::CylinderColor Generating XML output for class Avogadro::Rendering::CylinderGeomet/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.h:144: warning: The following parameter of Avogadro::QtGui::FileFormatDialog::selectFileFormat(QWidget *parentWidget, const std::vector< const Io::FileFormat * > &ffs, const QString &caption, const QString &prompt, const QString &settingsKey=QString(), const QString &formatPrefix=QString()) is not documented: parameter 'formatPrefix' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:319: warning: argument 'fmap' of command @param is not found in the argument list of FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:319: warning: The following parameter of Avogadro::Io::FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const is not documented: parameter 'fvec' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:299: warning: Found unknown command '@data' ry Generating XML output for class Avogadro::Rendering::DashedLineGeometry Generating XML output for class Avogadro::Io::DcdFormat Generating XML output for class Avogadro::Calc::DefaultModel Generating XML output for class Avogadro::Core::DihedralIterator Generating XML output for class Avogadro::Rendering::Drawable Generating XML output for class Avogadro::Rendering::EigenData Generating XML output for class Avogadro::QtGui::ElementDetail Generating XML output for class Avogadro::QtGui::ElementItem Generating XML output for class Avogadro::Core::Elements Generating XML output for class Avogadro::QtGui::ElementTranslator Generating XML output for class Avogadro::Calc::EnergyCalculator Generating XML output for class Avogadro::Calc::EnergyManager Generating XML output for class Avogadro::QtGui::ExtensionPlugin Generating XML output for class Avogadro::QtGui::ExtensionPluginFactory Generating XML output for class Avogadro::QtGui::FileBrowseWidget Generating XML output for class Avogadro::Io::FileFormat Generating XML output for class Avogadro::QtGui::FileFormatDialog Generating XML output for class Avogadro::Io::FileFormatManager Generating XML output for class Avogadro::Frustrum Generating XML output for class Avogadro::QuantumIO::GamessukOut Generating XML output for class Avogadro::QuantumIO::GAMESSUSOutput Generating XML output for class Avogadro::QuantumIO::GaussianCube Generating XML output for class Avogadro::QuantumIO::GaussianFchk Generating XML output for class Avogadro::Core::GaussianSet Generating XML output for class Avogadro::Core::GaussianSetTools Generating XML output for class Avogadro::QtGui::GenericHighlighter Generating XML output for class Avogadro::QuantumIO::GenericOutput Generating XML output for class Avogadro::Rendering::GeometryNode Generating XML output for class Avogadro::Rendering::GeometryVisitor Generating XML output for class Avogadro::Rendering::GLRenderer Generating XML output for class Avogadro::Rendering::GLRenderVisitor Generating XML output for class Avogadro::QtOpenGL::GLWidget Generating XML output for class Avogadro::Core::Graph Generating XML output for class Avogadro::Io::GromacsFormat Generating XML output for class Avogadro::Rendering::GroupNode Generating XML output for class Avogadro::QuantumIO::GUKBasisSet Generating XML output for class Avogadro::Core::hBondRecord Generating XML output for class Avogadro::Io::Hdf5DataFormat Generating XML output for class Avogadro::Core::ArraySet::Holder Generating XML output for class Avogadro::QtGui::HydrogenTools Generating XML output for class Avogadro::Rendering::Identifier Generating XML output for class Avogadro::Rendering::Primitive::Identifier Generating XML output for class Avogadro::MoleQueue::InputGenerator Generating XML output for class Avogadro::MoleQueue::InputGeneratorDialog Generating XML output for class Avogadro::MoleQueue::InputGeneratorWidget Generating XML output for class Avogadro::QtGui::InsertFragmentDialog Generating XML output for class Avogadro::QtGui::InterfaceScript Generating XML output for class Avogadro::QtGui::InterfaceWidget Generating XML output for class Avogadro::MoleQueue::JobObject Generating XML output for class Avogadro::MoleQueue::JsonRpcClient Generating XML output for class Avogadro::QtGui::JsonWidget Generating XML output for class Avogadro::Io::LammpsDataFormat Generating XML output for class Avogadro::Io::LammpsTrajectoryFormat Generating XML output for class Avogadro::Core::Layer Generating XML output for class Avogadro::Core::LayerData Generating XML output for class Avogadro::Core::LayerManager Generating XML output for class Avogadro::QtGui::LayerModel Generating XML output for class Avogadro::Calc::LennardJones Generating XML output for class Avogadro::Rendering::Line Generating XML output for class Avogadro::Rendering::LineStripGeometry Generating XML output for class Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare Generating XML output for class Avogadro::Io::MdlFormat Generating XML output for class Avogadro::Core::Mesh Generating XML output for class Avogadro::QtGui::MeshGenerator Generating XML output for class Avogadro::Rendering::MeshGeometry Generating XML output for class Avogadro::Io::MMTFFormat Generating XML output for class Avogadro::QuantumIO::MoldenFile Generating XML output for class Avogadro::Core::Molecule Generating XML output for class Avogadro::QtGui::Molecule Generating XML output for class Avogadro::Core::MoleculeInfo Generating XML output for class Avogadro::QtGui::MoleculeModel Generating XML output for class Avogadro::QtGui::MoleculeSystem Generating XML output for class Avogadro::MoleQueue::MoleQueueDialog Generating XML output for class Avogadro::MoleQueue::MoleQueueManager Generating XML output for class Avogadro::MoleQueue::MoleQueueQueueListModel Generating XML output for class Avogadro::MoleQueue::MoleQueueWidget Generating XML output for class Avogadro::QuantumIO::MopacAux Generating XML output for class Avogadro::QtGui::MultiViewWidget Generating XML output for class Avogadro::Core::Mutex Generating XML output for class Avogadro::Core::NameAtomTyper Generating XML output for class Avogadro::Core::NeighborPerceiver Generating XML output for class Avogadro::Rendering::Node Generating XML output for class Avogadro::Rendering::GroupNode::NodeInfo Generating XML output for class Avogadro::QuantumIO::NWChemJson Generating XML output for class Avogadro::QuantumIO::NWChemLog Generating XML output for class Avogadro::QuantumIO::ORCAOutput Generating XML output for class Avogadro::Io::OutcarFormat Generating XML output for class Avogadro::Rendering::DashedLineGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::LineStripGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::MeshGeometry::PackedVertex Generating XML output for class Avogadro::Io::PdbFormat Generating XML output for class Avogadro::QtGui::PeriodicTableScene Generating XML output for class Avogadro::QtGui::PeriodicTableView Generating XML output for class Avogadro::QtGui::PersistentAtom Generating XML output for class Avogadro::QtGui::PersistentBond Generating XML output for class Avogadro::Core::ArraySet::PlaceHolder Generating XML output for class Avogadro::QtGui::PluginLayerManager Generating XML output for class Avogadro::Rendering::PLYVisitor Generating XML output for class Avogadro::Rendering::Point Generating XML output for class Avogadro::Io::PoscarFormat Generating XML output for class Avogadro::Rendering::POVRayVisitor Generating XML output for class Avogadro::Rendering::Primitive Generating XML output for class Avogadro::QtGui::PythonScript Generating XML output for class Avogadro::QtOpenGL::QtTextRenderStrategy Generating XML output for class Avogadro::Rendering::Quad Generating XML output for class Avogadro::Rendering::QuadOutline Generating XML output for class Avogadro::VTK::QVTKWidget Generating XML output for class Avogadro::MoleQueue::BatchJob::Request Generating XML output for class Avogadro::Core::Residue Generating XML output for class Avogadro::Core::ResidueData Generating XML output for class Avogadro::Core::RingPerceiver Generating XML output for class Avogadro::QtGui::GenericHighlighter::Rule Generating XML output for class Avogadro::QtGui::RWAtom Generating XML output for class Avogadro::QtGui::RWBond Generating XML output for class Avogadro::QtGui::RWLayerManager Generating XML output for class Avogadro::QtGui::RWMolecule Generating XML output for class Avogadro::Rendering::Scene Generating XML output for class Avogadro::QtGui::ScenePlugin Generating XML output for class Avogadro::QtGui::ScenePluginFactory Generating XML output for class Avogadro::QtGui::ScenePluginModel Generating XML output for class Avogadro::QtGui::ScriptLoader Generating XML output for class Avogadro::Core::SecondaryStructureAssigner Generating XML output for class Avogadro::Rendering::Shader Generating XML output for class Avogadro::Rendering::ShaderInfo Generating XML output for class Avogadro::Rendering::ShaderProgram Generating XML output for class Avogadro::Core::SharedMutex Generating XML output for class Avogadro::Core::SlaterSet Generating XML output for class Avogadro::Core::SlaterSetTools Generating XML output for class Avogadro::Rendering::SolidPipeline Generating XML output for class Avogadro::QtGui::SortFilterTreeProxyModel Generating XML output for class Avogadro::Core::SpaceGroups Generating XML output for class Avogadro::Rendering::Sphere Generating XML output for class Avogadro::Rendering::SphereColor Generating XML output for class Avogadro::Rendering::SphereGeometry Generating XML output for class Avogadro::Core::SymbolAtomTyper Generating XML output for class Avogadro::Rendering::TextLabel2D Generating XML output for class Avogadro::Rendering::TextLabel3D Generating XML output for class Avogadro::Rendering::TextLabelBase Generating XML output for class Avogadro::Rendering::TextProperties Generating XML output for class Avogadro::Rendering::TextRenderStrategy Generating XML output for class Avogadro::Rendering::Texture2D Generating XML output for class Avogadro::QtGui::ToolPlugin Generating XML output for class Avogadro::QtGui::ToolPluginFactory Generating XML output for class Avogadro::Rendering::TransformNode Generating XML output for class Avogadro::Io::TrrFormat Generating XML output for class Avogadro::Io::TurbomoleFormat Generating XML output for class Avogadro::TypeTraits Generating XML output for class Avogadro::TypeTraits< char > Generating XML output for class Avogadro::TypeTraits< double > Generating XML output for class Avogadro::TypeTraits< float > Generating XML output for class Avogadro::TypeTraits< int > Generating XML output for class Avogadro::TypeTraits< short > Generating XML output for class Avogadro::TypeTraits< unsigned char > Generating XML output for class Avogadro::TypeTraits< unsigned int > Generating XML output for class Avogadro::TypeTraits< unsigned short > Generating XML output for class Avogadro::QtGui::RWMolecule::UndoCommand Generating XML output for class Avogadro::Core::UnitCell Generating XML output for class Avogadro::QtGui::UnitCell Generating XML output for class Avogadro::Core::Variant Generating XML output for class Avogadro::Core::VariantMap Generating XML output for class Avogadro::QtGui::ViewFactory Generating XML output for class Avogadro::Rendering::Visitor Generating XML output for class Avogadro::Rendering::VolumeGeometry Generating XML output for class Avogadro::Rendering::VRMLVisitor Generating XML output for class vtkAvogadroActor Generating XML output for class Avogadro::VTK::vtkGLWidget Generating XML output for class Avogadro::Io::XyzFormat Generating XML output for namespace Avogadro Generating XML output for namespace Avogadro::Calc Generating XML output for namespace Avogadro::Core Generating XML output for namespace Avogadro::Core::internal Generating XML output for namespace Avogadro::Io Generating XML output for namespace Avogadro::MoleQueue Generating XML output for namespace Avogadro::MoleQueue::Ui Generating XML output for namespace Avogadro::QtGui Generating XML output for namespace Avogadro::QtGui Generating XML output for namespace Avogadro::QtGui::Ui Generating XML output for namespace Avogadro::QtGui::Utilities Generating XML output for namespace Avogadro::QtOpenGL Generating XML output for namespace Avogadro::QtPlugins Generating XML output for namespace Avogadro::QuantumIO Generating XML output for namespace Avogadro::Rendering Generating XML output for namespace Avogadro::VTK Generating XML output for namespace cppoptlib Generating XML output for namespace QtPlugins Generating XML output for namespace std Generating XML output for file chargemanager.h Generating XML output for file chargemodel.h Generating XML output for file defaultmodel.h Generating XML output for file energycalculator.h Generating XML output for file energymanager.h Generating XML output for file lennardjones.h Generating XML output for file lennardjonesdata.h Generating XML output for file angleiterator.h Generating XML output for file angletools.h Generating XML output for file array.h Generating XML output for file atom.h Generating XML output for file atomtyper-inline.h Generating XML output for file atomtyper.h Generating XML output for file atomutilities.h Generating XML output for file avogadrocore.h Generating XML output for file avospglib.h Generating XML output for file basisset.h Generating XML output for file bond.h Generating XML output for file color3f.h Generating XML output for file coordinateblockgenerator.h Generating XML output for file coordinateset.h Generating XML output for file crystaltools.h Generating XML output for file cube.h Generating XML output for file dihedraliterator.h Generating XML output for file elementdata.h Generating XML output for file elements.h Generating XML output for file gaussianset.h Generating XML output for file gaussiansettools.h Generating XML output for file graph.h Generating XML output for file layer.h Generating XML output for file layermanager.h Generating XML output for file matrix.h Generating XML output for file mdlvalence_p.h Generating XML output for file mesh.h Generating XML output for file mutex.h Generating XML output for file nameatomtyper.h Generating XML output for file neighborperceiver.h Generating XML output for file residue.h Generating XML output for file residuecolors.h Generating XML output for file residuedata.h Generating XML output for file ringperceiver.h Generating XML output for file secondarystructure.h Generating XML output for file sharedmutex.h Generating XML output for file slaterset.h Generating XML output for file slatersettools.h Generating XML output for file spacegroupdata.h Generating XML output for file spacegroups.h Generating XML output for file symbolatomtyper.h Generating XML output for file types.h Generating XML output for file unitcell.h Generating XML output for file variant-inline.h Generating XML output for file variant.h Generating XML output for file variantmap.h Generating XML output for file vector.h Generating XML output for file cjsonformat.h Generating XML output for file cmlformat.h Generating XML output for file cmsgpackformat.h Generating XML output for file dcdformat.h Generating XML output for file fileformat.h Generating XML output for file fileformatmanager.h Generating XML output for file gromacsformat.h Generating XML output for file hdf5dataformat.h Generating XML output for file lammpsformat.h Generating XML output for file mdlformat.h Generating XML output for file mmtfformat.h Generating XML output for file pdbformat.h Generating XML output for file trrformat.h Generating XML output for file turbomoleformat.h Generating XML output for file vaspformat.h Generating XML output for file xyzformat.h Generating XML output for file batchjob.h Generating XML output for file client.h Generating XML output for file jobobject.h Generating XML output for file jsonrpcclient.h Generating XML output for file inputgenerator.h Generating XML output for file inputgeneratordialog.h Generating XML output for file inputgeneratorwidget.h Generating XML output for file molequeuedialog.h Generating XML output for file molequeuemanager.h Generating XML output for file molequeuequeuelistmodel.h Generating XML output for file molequeuewidget.h Generating XML output for file backgroundfileformat.h Generating XML output for file colorbutton.h Generating XML output for file containerwidget.h Generating XML output for file customelementdialog.h Generating XML output for file elementdetail_p.h Generating XML output for file elementitem_p.h Generating XML output for file elementtranslator.h Generating XML output for file extensionplugin.h Generating XML output for file filebrowsewidget.h Generating XML output for file fileformatdialog.h Generating XML output for file generichighlighter.h Generating XML output for file hydrogentools.h Generating XML output for file insertfragmentdialog.h Generating XML output for file interfacescript.h Generating XML output for file interfacewidget.h Generating XML output for file jsonwidget.h Generating XML output for file layermodel.h Generating XML output for file meshgenerator.h Generating XML output for file core/molecule.h Generating XML output for file qtgui/molecule.h Generating XML output for file moleculemodel.h Generating XML output for file multiviewwidget.h Generating XML output for file periodictablescene_p.h Generating XML output for file periodictableview.h Generating XML output for file persistentatom.h Generating XML output for file persistentbond.h Generating XML output for file pluginlayermanager.h Generating XML output for file pythonscript.h Generating XML output for file rwlayermanager.h Generating XML output for file rwmolecule.h Generating XML output for file rwmolecule_undo.h Generating XML output for file sceneplugin.h Generating XML output for file scenepluginmodel.h Generating XML output for file scriptloader.h Generating XML output for file sortfiltertreeproxymodel.h Generating XML output for file toolplugin.h Generating XML output for file core/utilities.h Generating XML output for file qtgui/utilities.h Generating XML output for file viewfactory.h Generating XML output for file activeobjects.h Generating XML output for file glwidget.h Generating XML output for file qttextrenderstrategy.h Generating XML output for file gamessukout.h Generating XML output for file gamessus.h Generating XML output for file gaussiancube.h Generating XML output for file gaussianfchk.h Generating XML output for file genericoutput.h Generating XML output for file molden.h Generating XML output for file mopacaux.h Generating XML output for file nwchemjson.h Generating XML output for file nwchemlog.h Generating XML output for file orca.h Generating XML output for file ambientocclusionspheregeometry.h Generating XML output for file arcsector.h Generating XML output for file arcstrip.h Generating XML output for file arrowgeometry.h Generating XML output for file avogadrogl.h Generating XML output for file avogadrorendering.h Generating XML output for file beziergeometry.h Generating XML output for file bsplinegeometry.h Generating XML output for file bufferobject.h Generating XML output for file camera.h Generating XML output for file cartoongeometry.h Generating XML output for file curvegeometry.h Generating XML output for file cylindergeometry.h Generating XML output for file dashedlinegeometry.h Generating XML output for file drawable.h Generating XML output for file geometrynode.h Generating XML output for file geometryvisitor.h Generating XML output for file glrenderer.h Generating XML output for file glrendervisitor.h Generating XML output for file groupnode.h Generating XML output for file linestripgeometry.h Generating XML output for file meshgeometry.h Generating XML output for file node.h Generating XML output for file plyvisitor.h Generating XML output for file povrayvisitor.h Generating XML output for file primitive.h Generating XML output for file quad.h Generating XML output for file quadoutline.h Generating XML output for file scene.h Generating XML output for file shader.h Generating XML output for file shaderprogram.h Generating XML output for file solidpipeline.h Generating XML output for file spheregeometry.h Generating XML output for file textlabel2d.h Generating XML output for file textlabel3d.h Generating XML output for file textlabelbase.h Generating XML output for file textproperties.h Generating XML output for file textrenderstrategy.h Generating XML output for file texture2d.h Generating XML output for file transformnode.h Generating XML output for file visitor.h Generating XML output for file volumegeometry.h Generating XML output for file vrmlvisitor.h Generating XML output for file chartdialog.h Generating XML output for file chartwidget.h Generating XML output for file qvtkwidget.h Generating XML output for file vtkAvogadroActor.h Generating XML output for file vtkglwidget.h Generating XML output for file mainpage.dox Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 4050/65536 hits=22636 misses=5697 symbol lookup cache used 10460/65536 hits=75106 misses=10460 finished... Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.C6Yxyn -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/libgwavi.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/angletools.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/angleiterator.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/array.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/avogadrocore.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/color3f.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/coordinateset.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/matrix.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/types.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/utilities.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/vector.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroCore.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroCore.so.1 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroCore.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/atom.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/atomtyper.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/atomtyper-inline.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/atomutilities.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/basisset.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/bond.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/coordinateblockgenerator.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/crystaltools.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/cube.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/dihedraliterator.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/elements.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/gaussianset.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/gaussiansettools.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/graph.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/layer.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/layermanager.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/mesh.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/molecule.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/mutex.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/nameatomtyper.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/neighborperceiver.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/residue.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/ringperceiver.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/secondarystructure.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/slaterset.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/slatersettools.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/spacegroups.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/symbolatomtyper.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/unitcell.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/variant.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/variant-inline.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/variantmap.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/version.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/sharedmutex.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/avospglib.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/core/avogadrocoreexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroCalc.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroCalc.so.1 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroCalc.so.1.99.0" to "" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroCalc.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/chargemodel.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/chargemanager.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/defaultmodel.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/energycalculator.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/energymanager.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/lennardjones.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/calc/avogadrocalcexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroIO.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroIO.so.1 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroIO.so.1.99.0" to "" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroIO.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/cjsonformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/cmlformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/cmsgpackformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/dcdformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/fileformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/fileformatmanager.h -- Installing: 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/hdf5dataformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/mmtfformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/io/avogadroioexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQuantumIO.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQuantumIO.so.1 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQuantumIO.so.1.99.0" to "" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQuantumIO.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/quantumio/gamessus.h -- Installing: 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/quantumio/orca.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/quantumio/avogadroquantumioexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroRendering.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroRendering.so.1 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroRendering.so.1.99.0" to "" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroRendering.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/arcsector.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/arcstrip.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/arrowgeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/avogadrogl.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/avogadrorendering.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/beziergeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/bsplinegeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/bufferobject.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/camera.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/cartoongeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/curvegeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/cylindergeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/dashedlinegeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/drawable.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/geometrynode.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/geometryvisitor.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/groupnode.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/glrenderer.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/glrendervisitor.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/linestripgeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/meshgeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/node.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/plyvisitor.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/povrayvisitor.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/primitive.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/quad.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/quadoutline.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/scene.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/shader.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/shaderprogram.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/solidpipeline.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/spheregeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/textlabel2d.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/textlabel3d.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/textlabelbase.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/textproperties.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/textrenderstrategy.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/texture2d.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/transformnode.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/visitor.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/volumegeometry.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/vrmlvisitor.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/rendering/avogadrorenderingexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtGui.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtGui.so.1 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtGui.so.1.99.0" to "" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtGui.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/backgroundfileformat.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/colorbutton.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/containerwidget.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/customelementdialog.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/elementtranslator.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/extensionplugin.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/filebrowsewidget.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/fileformatdialog.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/generichighlighter.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/hydrogentools.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/insertfragmentdialog.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/interfacescript.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/interfacewidget.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/jsonwidget.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/layermodel.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/rwlayermanager.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/meshgenerator.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/molecule.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/moleculemodel.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/multiviewwidget.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/periodictableview.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/persistentatom.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/persistentbond.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/pluginlayermanager.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/pythonscript.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/rwmolecule.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/sceneplugin.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/scenepluginmodel.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/scriptloader.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/sortfiltertreeproxymodel.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/toolplugin.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/utilities.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/viewfactory.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtgui/avogadroqtguiexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtOpenGL.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtOpenGL.so.1 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtOpenGL.so.1.99.0" to "" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtOpenGL.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtopengl/activeobjects.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtopengl/glwidget.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtopengl/qttextrenderstrategy.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtopengl/avogadroqtopenglexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroMoleQueue.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroMoleQueue.so.1 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroMoleQueue.so.1.99.0" to "" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroMoleQueue.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/molequeue/batchjob.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/molequeue/inputgenerator.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/molequeue/inputgeneratordialog.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/molequeue/inputgeneratorwidget.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/molequeue/molequeuedialog.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/molequeue/molequeuemanager.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/molequeue/molequeuequeuelistmodel.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/molequeue/molequeuewidget.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/molequeue/avogadromolequeueexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ThreeDMol.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ApplyColors.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/AlignTool.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/BondCentric.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Bonding.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Cartoons.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Centroid.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ConfigurePython.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/CopyPaste.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Crystal.a + RPM_EC=0 ++ jobs -p + exit 0 + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + '[' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build + mkdir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.99.0 + DESTDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/CrystalScene.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/CustomElements.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Editor.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/FetchPDB.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Focus.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Hydrogens.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ImportPQR.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/NucleicInput.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Label.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/LabelEditor.a -- Installing: 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Licorice.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Meshes.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/NonCovalent.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/VanDerWaals.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Wireframe.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/OverlayAxes.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/QTAIMExtension.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/QTAIMScenePlugin.a -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtPlugins.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtPlugins.so.1 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtPlugins.so.1.99.0" to "" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtPlugins.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtplugins/pluginmanager.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtplugins/pluginfactory.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtplugins/avogadrostaticqtplugins.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtplugins/avogadroqtpluginsexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/AvogadroLibs/avogadrolibs/README.md -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/AvogadroLibs/avogadrolibs/CONTRIBUTING.md -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/AvogadroLibs/avogadrolibs/LICENSE -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/cmake/avogadrolibs/AvogadroLibsConfig.cmake -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/cmake/avogadrolibs/AvogadroLibsConfigVersion.cmake -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/cmake/avogadrolibs/Findlibmsym.cmake -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/cmake/avogadrolibs/AvogadroLibsTargets.cmake -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/cmake/avogadrolibs/AvogadroLibsTargets-release.cmake + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts recursedown('/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts') recursedown('/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/charges') recursedown('/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/energy') recursedown('/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/formatScripts') recursedown('/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators') /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/charges/antechamber.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/charges/xtb.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/energy/ani2x.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/energy/gfn1.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/energy/gfn2.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/energy/gfnff.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/formatScripts/zyx.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators/dalton.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators/gamessuk.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators/gaussian.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators/molpro.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators/mopac.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators/nwchem.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators/orca.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators/psi4.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators/pyscf.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators/qchem.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts/inputGenerators/terachem.py: no change + rm -rf /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc + mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -a redhat-linux-build/docs/html /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs/html + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.99.0-6.fc43 --unique-debug-suffix -1.99.0-6.fc43.x86_64 --unique-debug-src-base avogadro2-libs-1.99.0-6.fc43.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 find-debuginfo: starting Extracting debug info from 74 files DWARF-compressing 9 files sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/avogadro2-libs-1.99.0-6.fc43.x86_64 cpio: redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/ctime: Cannot stat: No such file or directory cpio: 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redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cartoons/Cartoons_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/centroid/Centroid_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/array: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/system_error: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/commandscripts/commands_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/copypaste/CopyPaste_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/system_error: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/CrystalScene_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/crystal/Crystal_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/customelements/CustomElements_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/new: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/editor/Editor_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/system_error: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/focus/Focus_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/force/Force_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/forcefield/Forcefield_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/gamessinput/GamessInput_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/importpqr/ImportPQR_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertdna/NucleicInput_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/LabelEditor_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/system_error: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/label/Label_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/licorice/Licorice_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/new: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/manipulator/Manipulator_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/new: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/measuretool/MeasureTool_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/system_error: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/meshes/Meshes_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/navigator/Navigator_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/array: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/system_error: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/openbabel/OpenBabel_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/playertool/PlayerTool_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/iosfwd: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/new: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/ply/PLY_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/povray/POVRay_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/propertytables/PropertyTables_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/system_error: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/resetview/ResetView_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/new: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/system_error: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/select/Select_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/cmath: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/complex: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/cstring: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/cwctype: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/new: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/selectiontool/Selection_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/surfaces/Surfaces_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/svg/SVG_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/templatetool/TemplateTool_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vibrations/Vibrations_autogen/c++config.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/vrml/VRML_autogen/type_traits: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/atomic: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/clocale: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/cstddef: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/cstdint: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/cstdio: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/cstdlib: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/ctime: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/cwchar: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/functional: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/initializer_list: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/stdlib.h: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/string_view: Cannot stat: No such file or directory cpio: redhat-linux-build/avogadro/qtplugins/wireframe/Wireframe_autogen/type_traits: Cannot stat: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib64/avogadro2/scripts/formatScripts/zyx.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/inputGenerators/terachem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/inputGenerators/qchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/inputGenerators/pyscf.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/inputGenerators/psi4.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/inputGenerators/orca.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/inputGenerators/nwchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/inputGenerators/mopac.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/inputGenerators/molpro.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/inputGenerators/gaussian.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/inputGenerators/gamessuk.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/inputGenerators/dalton.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/energy/gfnff.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/energy/gfn2.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/energy/gfn1.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/energy/ani2x.py is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/libgwavi.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/apbs.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/commands.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Vibrations.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Wireframe.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/VanDerWaals.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ResetView.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ThreeDMol.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/TemplateTool.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/VRML.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Surfaces.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/QTAIMExtension.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Selection.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/SpaceGroup.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Select.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ScriptFileFormats.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ScriptCharges.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/SVG.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/QuantumInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/QTAIMScenePlugin.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/PropertyTables.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/PluginDownloader.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/OpenBabel.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/PlayerTool.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/POVRay.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/PLY.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/OpenMMInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/NucleicInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/NonCovalent.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Manipulator.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Navigator.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/NetworkDatabases.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/MolecularProperties.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/MeasureTool.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Meshes.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/LineFormatInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/OverlayAxes.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Licorice.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/LammpsInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/LabelEditor.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Label.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ImportPQR.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Forcefield.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/InsertFragment.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/GamessInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Hydrogens.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Force.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Focus.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Editor.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/FetchPDB.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/CustomElements.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Crystal.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/CrystalScene.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Cp2kInput.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/CopyPaste.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/BondCentric.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/CoordinateEditor.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/CloseContacts.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ConfigurePython.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Cartoons.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Centroid.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Bonding.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/AlignTool.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/BallStick.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ApplyColors.a: replacing with normalized version Scanned 500 directories and 4779 files, processed 568 inodes, 65 modified (65 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/avogadro2-libs-1.99.0-build/SPECPARTS/rpm-debuginfo.specpart Processing files: avogadro2-libs-1.99.0-6.fc43.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.4Bqpxz + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + DOCDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/README.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi/README-libgwavi.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/README-avogenerators.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/fragments/README-fragments.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.3tSPGF + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + LICENSEDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/LICENSE /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/molecules/LICENSE-molecules /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/fragments/LICENSE-fragments /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: avogadro2-libs = 1.99.0-6.fc43 avogadro2-libs(x86-64) = 1.99.0-6.fc43 avogadro2-libs-static = 0:1.99.0-6.fc43 libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) python-avogadro2-libs = 1.99.0-6.fc43 python3.14-avogadro2-libs = 1.99.0-6.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) libGLEW.so.2.2()(64bit) libGLX.so.0()(64bit) libOpenGL.so.0()(64bit) libQt5Concurrent.so.5()(64bit) libQt5Concurrent.so.5(Qt_5)(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Core.so.5(Qt_5.15)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Svg.so.5()(64bit) libQt5Svg.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libarchive.so.13()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libopenbabel.so.7()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsymspg.so.2()(64bit) rtld(GNU_HASH) Obsoletes: python-avogadro2-libs < 1.99.0-6.fc43 Processing files: avogadro2-libs-devel-1.99.0-6.fc43.x86_64 Provides: avogadro2-libs-devel = 1.99.0-6.fc43 avogadro2-libs-devel(x86-64) = 1.99.0-6.fc43 cmake(AvogadroLibs) = 1.99.0 cmake(avogadrolibs) = 1.99.0 libgwavi-static Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) Processing files: avogadro2-libs-doc-1.99.0-6.fc43.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.JBfCLh + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + DOCDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/README.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.lNP01i + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + LICENSEDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/LICENSE /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: avogadro2-libs-doc = 1.99.0-6.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debugsource-1.99.0-6.fc43.x86_64 Provides: avogadro2-libs-debugsource = 1.99.0-6.fc43 avogadro2-libs-debugsource(x86-64) = 1.99.0-6.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debuginfo-1.99.0-6.fc43.x86_64 Provides: avogadro2-libs-debuginfo = 1.99.0-6.fc43 avogadro2-libs-debuginfo(x86-64) = 1.99.0-6.fc43 debuginfo(build-id) = 508bdafe50b898db85efe702e7d54c83cbca4bd5 debuginfo(build-id) = 52879ec50560d2e0a8771959e30dbca7497d80a2 debuginfo(build-id) = 8535cbe839969f3bd3831941de50ddb01097f33d debuginfo(build-id) = 8a0affe32d3c4be229506431b580a2ecc035d900 debuginfo(build-id) = 908b23b8e5914fe9bcacb63482c558bddc11eaff debuginfo(build-id) = 9d1480036686218be0b9f20915ed0f68b6098f23 debuginfo(build-id) = c60fbed46cb89f9f6ab8e0110b94a52daf9eddd2 debuginfo(build-id) = d5bee950d79828e495062c05729ef1f64df40809 debuginfo(build-id) = f65c8aabef01b07392ebdce20700003f70e6a628 libAvogadroCalc.so.1.99.0-1.99.0-6.fc43.x86_64.debug()(64bit) libAvogadroCore.so.1.99.0-1.99.0-6.fc43.x86_64.debug()(64bit) libAvogadroIO.so.1.99.0-1.99.0-6.fc43.x86_64.debug()(64bit) libAvogadroMoleQueue.so.1.99.0-1.99.0-6.fc43.x86_64.debug()(64bit) libAvogadroQtGui.so.1.99.0-1.99.0-6.fc43.x86_64.debug()(64bit) libAvogadroQtOpenGL.so.1.99.0-1.99.0-6.fc43.x86_64.debug()(64bit) libAvogadroQtPlugins.so.1.99.0-1.99.0-6.fc43.x86_64.debug()(64bit) libAvogadroQuantumIO.so.1.99.0-1.99.0-6.fc43.x86_64.debug()(64bit) libAvogadroRendering.so.1.99.0-1.99.0-6.fc43.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: avogadro2-libs-debugsource(x86-64) = 1.99.0-6.fc43 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT Wrote: /builddir/build/RPMS/avogadro2-libs-doc-1.99.0-6.fc43.noarch.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-devel-1.99.0-6.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debugsource-1.99.0-6.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-1.99.0-6.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debuginfo-1.99.0-6.fc43.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.aAZRtO + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + test -d /builddir/build/BUILD/avogadro2-libs-1.99.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/avogadro2-libs-1.99.0-build + rm -rf /builddir/build/BUILD/avogadro2-libs-1.99.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild avogadro2-libs-1.99.0-6.fc43.src.rpm Finish: build phase for avogadro2-libs-1.99.0-6.fc43.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1752610808.358233/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.99.0-6.fc43.src.rpm) Config(child) 12 minutes 36 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "avogadro2-libs-doc", "epoch": null, "version": "1.99.0", "release": "6.fc43", "arch": "noarch" }, { "name": "avogadro2-libs", "epoch": null, "version": "1.99.0", "release": "6.fc43", "arch": "x86_64" }, { "name": "avogadro2-libs-devel", "epoch": null, "version": "1.99.0", "release": "6.fc43", "arch": "x86_64" }, { "name": "avogadro2-libs-debuginfo", "epoch": null, "version": "1.99.0", "release": "6.fc43", "arch": "x86_64" }, { "name": "avogadro2-libs-debugsource", "epoch": null, "version": "1.99.0", "release": "6.fc43", "arch": "x86_64" }, { "name": "avogadro2-libs", "epoch": null, "version": "1.99.0", "release": "6.fc43", "arch": "src" } ] } RPMResults finished