Warning: Permanently added '44.220.165.200' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10101566-epel-9-aarch64 --chroot epel-9-aarch64 Version: 1.6 PID: 9963 Logging PID: 9965 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 10101566, 'buildroot_pkgs': [], 'chroot': 'epel-9-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '6c88ff8e135a27ad3b6fe6ef07b22f68830deba5', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'mrtrix3', 'package_version': '3.0.8-1', 'project_dirname': 'neurofedora', 'project_name': 'neurofedora', 'project_owner': 'mhough', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/epel-9-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'mhough/neurofedora--mhough', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'mhough', 'tags': [], 'task_id': '10101566-epel-9-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3 /var/lib/copr-rpmbuild/workspace/workdir-ce5gewqr/mrtrix3 --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', '/var/lib/copr-rpmbuild/workspace/workdir-ce5gewqr/mrtrix3', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ce5gewqr/mrtrix3'... Running: git checkout 6c88ff8e135a27ad3b6fe6ef07b22f68830deba5 -- cmd: ['git', 'checkout', '6c88ff8e135a27ad3b6fe6ef07b22f68830deba5', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ce5gewqr/mrtrix3 rc: 0 stdout: stderr: Note: switching to '6c88ff8e135a27ad3b6fe6ef07b22f68830deba5'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 6c88ff8 automatic import of mrtrix3 Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ce5gewqr/mrtrix3 rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading mrtrix3-3.0.8.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o mrtrix3-3.0.8.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/mrtrix3-3.0.8.tar.gz/md5/0c77980d9c5d01ebbfea44f437bf942a/mrtrix3-3.0.8.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3962k 100 3962k 0 0 210M 0 --:--:-- --:--:-- --:--:-- 214M INFO: Reading stdout from command: md5sum mrtrix3-3.0.8.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ce5gewqr/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ce5gewqr/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1770434856.060397 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.6 starting (python version = 3.14.2, NVR = mock-6.6-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ce5gewqr/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ce5gewqr/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1770434856.060397 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ce5gewqr/mrtrix3/mrtrix3.spec) Config(rhel+epel-9-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.6 INFO: Mock Version: 6.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-aarch64-bootstrap-1770434856.060397/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.access.redhat.com/ubi9/ubi INFO: Pulling image: registry.access.redhat.com/ubi9/ubi INFO: Tagging container image as mock-bootstrap-dd90ca66-56c3-4c98-b82c-a35ecec5cca1 INFO: Checking that a5fc68e1ade9b02ed181cacc9464f4cf38e44c46d1059afeb8287bb8f84ec82d image matches host's architecture INFO: Copy content of container a5fc68e1ade9b02ed181cacc9464f4cf38e44c46d1059afeb8287bb8f84ec82d to /var/lib/mock/rhel+epel-9-aarch64-bootstrap-1770434856.060397/root INFO: mounting a5fc68e1ade9b02ed181cacc9464f4cf38e44c46d1059afeb8287bb8f84ec82d with podman image mount INFO: image a5fc68e1ade9b02ed181cacc9464f4cf38e44c46d1059afeb8287bb8f84ec82d as /var/lib/containers/storage/overlay/f1ac5e962ee5fd516e5a9af71e25370019998a97d591ac488864deffaaa33bbe/merged INFO: umounting image a5fc68e1ade9b02ed181cacc9464f4cf38e44c46d1059afeb8287bb8f84ec82d (/var/lib/containers/storage/overlay/f1ac5e962ee5fd516e5a9af71e25370019998a97d591ac488864deffaaa33bbe/merged) with podman image umount INFO: Removing image mock-bootstrap-dd90ca66-56c3-4c98-b82c-a35ecec5cca1 INFO: Package manager dnf4 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-aarch64-1770434856.060397/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf4 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.16.1.3-39.el9.aarch64 python3-dnf-4.14.0-31.el9.noarch python3-dnf-plugins-core-4.3.0-24.el9_7.noarch yum-4.14.0-31.el9.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 31 kB/s | 18 kB 00:00 Red Hat Enterprise Linux - BaseOS 99 MB/s | 122 MB 00:01 Red Hat Enterprise Linux - AppStream 91 MB/s | 89 MB 00:00 Red Hat Enterprise Linux - CodeReady Linux Buil 18 MB/s | 12 MB 00:00 Extra Packages for Enterprise Linux 9 - aarch64 102 MB/s | 20 MB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: bash aarch64 5.1.8-9.el9 baseos 1.7 M bzip2 aarch64 1.0.8-10.el9_5 baseos 59 k coreutils aarch64 8.32-39.el9 baseos 1.1 M cpio aarch64 2.13-16.el9 baseos 278 k diffutils aarch64 3.7-12.el9 baseos 396 k epel-rpm-macros noarch 9-17.el9 epel 15 k findutils aarch64 1:4.8.0-7.el9 baseos 552 k gawk aarch64 5.1.0-6.el9 baseos 1.0 M glibc-minimal-langpack aarch64 2.34-231.el9_7.2 baseos 22 k grep aarch64 3.6-5.el9 baseos 270 k gzip aarch64 1.12-1.el9 baseos 166 k info aarch64 6.7-15.el9 baseos 225 k patch aarch64 2.7.6-16.el9 appstream 126 k redhat-release aarch64 9.7-0.7.el9 baseos 53 k redhat-rpm-config noarch 210-1.el9 appstream 70 k rpm-build aarch64 4.16.1.3-39.el9 appstream 66 k sed aarch64 4.8-9.el9 baseos 307 k tar aarch64 2:1.34-9.el9_7 baseos 877 k unzip aarch64 6.0-59.el9 baseos 178 k util-linux aarch64 2.37.4-21.el9_7 baseos 2.3 M which aarch64 2.21-30.el9_6 baseos 41 k xz aarch64 5.2.5-8.el9_0 baseos 230 k Installing dependencies: alternatives aarch64 1.24-2.el9 baseos 41 k ansible-srpm-macros noarch 1-16.el9 epel 21 k audit-libs aarch64 3.1.5-7.el9 baseos 117 k basesystem noarch 11-13.el9 baseos 8.0 k binutils aarch64 2.35.2-67.el9_7.1 baseos 4.8 M binutils-gold aarch64 2.35.2-67.el9_7.1 baseos 881 k bzip2-libs aarch64 1.0.8-10.el9_5 baseos 43 k ca-certificates noarch 2025.2.80_v9.0.305-91.el9 baseos 1.0 M coreutils-common aarch64 8.32-39.el9 baseos 2.0 M cracklib aarch64 2.9.6-27.el9 baseos 99 k cracklib-dicts aarch64 2.9.6-27.el9 baseos 3.6 M crypto-policies noarch 20250905-1.git377cc42.el9_7 baseos 90 k curl aarch64 7.76.1-35.el9_7.3 baseos 289 k cyrus-sasl-lib aarch64 2.1.27-22.el9 baseos 754 k debugedit aarch64 5.0-11.el9 appstream 77 k dwz aarch64 0.16-1.el9 appstream 134 k ed aarch64 1.14.2-12.el9 baseos 77 k efi-srpm-macros noarch 6-4.el9 appstream 21 k elfutils aarch64 0.193-1.el9 baseos 568 k elfutils-debuginfod-client aarch64 0.193-1.el9 baseos 43 k elfutils-default-yama-scope noarch 0.193-1.el9 baseos 9.7 k elfutils-libelf aarch64 0.193-1.el9 baseos 204 k elfutils-libs aarch64 0.193-1.el9 baseos 265 k file aarch64 5.39-16.el9 baseos 52 k file-libs aarch64 5.39-16.el9 baseos 591 k filesystem aarch64 3.16-5.el9 baseos 4.8 M fonts-srpm-macros noarch 1:2.0.5-7.el9.1 appstream 29 k forge-srpm-macros noarch 0.4.0-1.el9 epel 19 k fpc-srpm-macros noarch 1.3-7.el9 epel 7.5 k gdb-minimal aarch64 16.3-2.el9 appstream 4.2 M gdbm-libs aarch64 1:1.23-1.el9 baseos 59 k ghc-srpm-macros noarch 1.5.0-6.el9 appstream 9.0 k ghc-srpm-macros-epel noarch 1.9.1-1.el9 epel 7.5 k glibc aarch64 2.34-231.el9_7.2 baseos 1.7 M glibc-common aarch64 2.34-231.el9_7.2 baseos 297 k glibc-gconv-extra aarch64 2.34-231.el9_7.2 baseos 1.7 M gmp aarch64 1:6.2.0-13.el9 baseos 269 k go-srpm-macros noarch 3.6.0-12.el9_7 appstream 27 k go-srpm-macros-epel noarch 3.8.0-1.el9 epel 26 k groff-base aarch64 1.22.4-10.el9 baseos 1.0 M json-c aarch64 0.14-11.el9 baseos 44 k kernel-srpm-macros noarch 1.0-14.el9 appstream 14 k keyutils-libs aarch64 1.6.3-1.el9 baseos 34 k krb5-libs aarch64 1.21.1-8.el9_6 baseos 769 k libacl aarch64 2.3.1-4.el9 baseos 24 k libarchive aarch64 3.5.3-6.el9_6 baseos 385 k libattr aarch64 2.5.1-3.el9 baseos 20 k libblkid aarch64 2.37.4-21.el9_7 baseos 111 k libbrotli aarch64 1.0.9-9.el9_7 baseos 318 k libcap aarch64 2.48-10.el9 baseos 70 k libcap-ng aarch64 0.8.2-7.el9 baseos 35 k libcom_err aarch64 1.46.5-8.el9 baseos 26 k libcurl aarch64 7.76.1-35.el9_7.3 baseos 278 k libdb aarch64 5.3.28-57.el9_6 baseos 710 k libeconf aarch64 0.4.1-4.el9 baseos 29 k libevent aarch64 2.1.12-8.el9_4 baseos 260 k libfdisk aarch64 2.37.4-21.el9_7 baseos 153 k libffi aarch64 3.4.2-8.el9 baseos 38 k libgcc aarch64 11.5.0-11.el9 baseos 79 k libgcrypt aarch64 1.10.0-11.el9 baseos 458 k libgomp aarch64 11.5.0-11.el9 baseos 256 k libgpg-error aarch64 1.42-5.el9 baseos 217 k libidn2 aarch64 2.3.0-7.el9 baseos 105 k libmount aarch64 2.37.4-21.el9_7 baseos 136 k libnghttp2 aarch64 1.43.0-6.el9 baseos 74 k libpkgconf aarch64 1.7.3-10.el9 baseos 37 k libpsl aarch64 0.21.1-5.el9 baseos 66 k libpwquality aarch64 1.4.4-8.el9 baseos 123 k libselinux aarch64 3.6-3.el9 baseos 87 k libsemanage aarch64 3.6-5.el9_6 baseos 118 k libsepol aarch64 3.6-3.el9 baseos 319 k libsigsegv aarch64 2.13-4.el9 baseos 30 k libsmartcols aarch64 2.37.4-21.el9_7 baseos 66 k libssh aarch64 0.10.4-17.el9_7 baseos 210 k libssh-config noarch 0.10.4-17.el9_7 baseos 8.1 k libstdc++ aarch64 11.5.0-11.el9 baseos 705 k libtasn1 aarch64 4.16.0-9.el9 baseos 76 k libtool-ltdl aarch64 2.4.6-46.el9 baseos 37 k libunistring aarch64 0.9.10-15.el9 baseos 491 k libutempter aarch64 1.2.1-6.el9 baseos 30 k libuuid aarch64 2.37.4-21.el9_7 baseos 31 k libverto aarch64 0.3.2-3.el9 baseos 24 k libxcrypt aarch64 4.4.18-3.el9 baseos 125 k libxml2 aarch64 2.9.13-14.el9_7 baseos 730 k libzstd aarch64 1.5.5-1.el9 baseos 277 k lua-libs aarch64 5.4.4-4.el9 baseos 129 k lua-srpm-macros noarch 1-6.el9 appstream 10 k lz4-libs aarch64 1.9.3-5.el9 baseos 69 k mpfr aarch64 4.1.0-7.el9 baseos 242 k ncurses aarch64 6.2-12.20210508.el9 baseos 404 k ncurses-base noarch 6.2-12.20210508.el9 baseos 96 k ncurses-libs aarch64 6.2-12.20210508.el9 baseos 317 k ocaml-srpm-macros noarch 6-6.el9 appstream 9.1 k openblas-srpm-macros noarch 2-11.el9 appstream 8.6 k openldap aarch64 2.6.8-4.el9 baseos 285 k openssl aarch64 1:3.5.1-7.el9_7 baseos 1.5 M openssl-fips-provider aarch64 3.0.7-8.el9 baseos 9.1 k openssl-fips-provider-so aarch64 3.0.7-8.el9 baseos 513 k openssl-libs aarch64 1:3.5.1-7.el9_7 baseos 2.2 M p11-kit aarch64 0.25.3-3.el9_5 baseos 511 k p11-kit-trust aarch64 0.25.3-3.el9_5 baseos 142 k pam aarch64 1.5.1-26.el9_6 baseos 621 k pcre aarch64 8.44-4.el9 baseos 183 k pcre2 aarch64 10.40-6.el9 baseos 220 k pcre2-syntax noarch 10.40-6.el9 baseos 144 k perl-AutoLoader noarch 5.74-481.1.el9_6 appstream 21 k perl-B aarch64 1.80-481.1.el9_6 appstream 180 k perl-Carp noarch 1.50-460.el9 appstream 31 k perl-Class-Struct noarch 0.66-481.1.el9_6 appstream 22 k perl-Data-Dumper aarch64 2.174-462.el9 appstream 57 k perl-Digest noarch 1.19-4.el9 appstream 29 k perl-Digest-MD5 aarch64 2.58-4.el9 appstream 40 k perl-Encode aarch64 4:3.08-462.el9 appstream 1.7 M perl-Errno aarch64 1.30-481.1.el9_6 appstream 14 k perl-Exporter noarch 5.74-461.el9 appstream 34 k perl-Fcntl aarch64 1.13-481.1.el9_6 appstream 20 k perl-File-Basename noarch 2.85-481.1.el9_6 appstream 17 k perl-File-Path noarch 2.18-4.el9 appstream 38 k perl-File-Temp noarch 1:0.231.100-4.el9 appstream 63 k perl-File-stat noarch 1.09-481.1.el9_6 appstream 17 k perl-FileHandle noarch 2.03-481.1.el9_6 appstream 15 k perl-Getopt-Long noarch 1:2.52-4.el9 appstream 64 k perl-Getopt-Std noarch 1.12-481.1.el9_6 appstream 15 k perl-HTTP-Tiny noarch 0.076-462.el9 appstream 57 k perl-IO aarch64 1.43-481.1.el9_6 appstream 88 k perl-IO-Socket-IP noarch 0.41-5.el9 appstream 45 k perl-IO-Socket-SSL noarch 2.073-2.el9 appstream 221 k perl-IPC-Open3 noarch 1.21-481.1.el9_6 appstream 22 k perl-MIME-Base64 aarch64 3.16-4.el9 appstream 34 k perl-Mozilla-CA noarch 20200520-6.el9 appstream 14 k perl-Net-SSLeay aarch64 1.94-3.el9 appstream 415 k perl-POSIX aarch64 1.94-481.1.el9_6 appstream 96 k perl-PathTools aarch64 3.78-461.el9 appstream 92 k perl-Pod-Escapes noarch 1:1.07-460.el9 appstream 22 k perl-Pod-Perldoc noarch 3.28.01-461.el9 appstream 92 k perl-Pod-Simple noarch 1:3.42-4.el9 appstream 229 k perl-Pod-Usage noarch 4:2.01-4.el9 appstream 43 k perl-Scalar-List-Utils aarch64 4:1.56-462.el9 appstream 74 k perl-SelectSaver noarch 1.02-481.1.el9_6 appstream 11 k perl-Socket aarch64 4:2.031-4.el9 appstream 58 k perl-Storable aarch64 1:3.21-460.el9 appstream 96 k perl-Symbol noarch 1.08-481.1.el9_6 appstream 14 k perl-Term-ANSIColor noarch 5.01-461.el9 appstream 51 k perl-Term-Cap noarch 1.17-460.el9 appstream 24 k perl-Text-ParseWords noarch 3.30-460.el9 appstream 18 k perl-Text-Tabs+Wrap noarch 2013.0523-460.el9 appstream 25 k perl-Time-Local noarch 2:1.300-7.el9 appstream 37 k perl-URI noarch 5.09-3.el9 appstream 125 k perl-base noarch 2.27-481.1.el9_6 appstream 16 k perl-constant noarch 1.33-461.el9 appstream 25 k perl-if noarch 0.60.800-481.1.el9_6 appstream 14 k perl-interpreter aarch64 4:5.32.1-481.1.el9_6 appstream 70 k perl-libnet noarch 3.13-4.el9 appstream 134 k perl-libs aarch64 4:5.32.1-481.1.el9_6 appstream 2.2 M perl-mro aarch64 1.23-481.1.el9_6 appstream 27 k perl-overload noarch 1.31-481.1.el9_6 appstream 45 k perl-overloading noarch 0.02-481.1.el9_6 appstream 12 k perl-parent noarch 1:0.238-460.el9 appstream 16 k perl-podlators noarch 1:4.14-460.el9 appstream 118 k perl-srpm-macros noarch 1-41.el9 appstream 9.4 k perl-subs noarch 1.03-481.1.el9_6 appstream 11 k perl-vars noarch 1.05-481.1.el9_6 appstream 13 k pkgconf aarch64 1.7.3-10.el9 baseos 44 k pkgconf-m4 noarch 1.7.3-10.el9 baseos 16 k pkgconf-pkg-config aarch64 1.7.3-10.el9 baseos 12 k popt aarch64 1.18-8.el9 baseos 68 k publicsuffix-list-dafsa noarch 20210518-3.el9 baseos 59 k pyproject-srpm-macros noarch 1.16.2-1.el9 appstream 14 k python-srpm-macros noarch 3.9-54.el9 appstream 18 k qt5-srpm-macros noarch 5.15.9-1.el9 appstream 9.1 k qt6-srpm-macros noarch 6.6.2-1.el9 epel 8.7 k readline aarch64 8.1-4.el9 baseos 214 k rpm aarch64 4.16.1.3-39.el9 baseos 531 k rpm-build-libs aarch64 4.16.1.3-39.el9 baseos 85 k rpm-libs aarch64 4.16.1.3-39.el9 baseos 300 k rpmautospec-rpm-macros noarch 0.8.1-11.el9 epel 11 k rust-srpm-macros noarch 17-4.el9 appstream 11 k rust-srpm-macros-epel noarch 26.3-1.el9 epel 10 k setup noarch 2.13.7-10.el9 baseos 150 k shadow-utils aarch64 2:4.9-15.el9 baseos 1.2 M sqlite-libs aarch64 3.34.1-9.el9_7 baseos 636 k systemd-libs aarch64 252-55.el9_7.7 baseos 644 k tzdata noarch 2025c-1.el9 baseos 904 k util-linux-core aarch64 2.37.4-21.el9_7 baseos 462 k xz-libs aarch64 5.2.5-8.el9_0 baseos 92 k zip aarch64 3.0-35.el9 baseos 263 k zlib aarch64 1.2.11-40.el9 baseos 92 k zstd aarch64 1.5.5-1.el9 baseos 360 k Transaction Summary ================================================================================ Install 210 Packages Total download size: 68 M Installed size: 248 M Downloading Packages: (1/210): basesystem-11-13.el9.noarch.rpm 48 kB/s | 8.0 kB 00:00 (2/210): cracklib-2.9.6-27.el9.aarch64.rpm 522 kB/s | 99 kB 00:00 (3/210): cpio-2.13-16.el9.aarch64.rpm 1.2 MB/s | 278 kB 00:00 (4/210): ed-1.14.2-12.el9.aarch64.rpm 851 kB/s | 77 kB 00:00 (5/210): diffutils-3.7-12.el9.aarch64.rpm 1.9 MB/s | 396 kB 00:00 (6/210): cracklib-dicts-2.9.6-27.el9.aarch64.rp 15 MB/s | 3.6 MB 00:00 (7/210): gawk-5.1.0-6.el9.aarch64.rpm 7.4 MB/s | 1.0 MB 00:00 (8/210): grep-3.6-5.el9.aarch64.rpm 2.5 MB/s | 270 kB 00:00 (9/210): groff-base-1.22.4-10.el9.aarch64.rpm 11 MB/s | 1.0 MB 00:00 (10/210): info-6.7-15.el9.aarch64.rpm 2.1 MB/s | 225 kB 00:00 (11/210): json-c-0.14-11.el9.aarch64.rpm 485 kB/s | 44 kB 00:00 (12/210): libattr-2.5.1-3.el9.aarch64.rpm 222 kB/s | 20 kB 00:00 (13/210): libcap-ng-0.8.2-7.el9.aarch64.rpm 339 kB/s | 35 kB 00:00 (14/210): libgpg-error-1.42-5.el9.aarch64.rpm 2.0 MB/s | 217 kB 00:00 (15/210): libidn2-2.3.0-7.el9.aarch64.rpm 1.1 MB/s | 105 kB 00:00 (16/210): libpsl-0.21.1-5.el9.aarch64.rpm 727 kB/s | 66 kB 00:00 (17/210): libpwquality-1.4.4-8.el9.aarch64.rpm 1.3 MB/s | 123 kB 00:00 (18/210): libsigsegv-2.13-4.el9.aarch64.rpm 330 kB/s | 30 kB 00:00 (19/210): libunistring-0.9.10-15.el9.aarch64.rp 5.2 MB/s | 491 kB 00:00 (20/210): libverto-0.3.2-3.el9.aarch64.rpm 264 kB/s | 24 kB 00:00 (21/210): libutempter-1.2.1-6.el9.aarch64.rpm 319 kB/s | 30 kB 00:00 (22/210): libxcrypt-4.4.18-3.el9.aarch64.rpm 1.4 MB/s | 125 kB 00:00 (23/210): lz4-libs-1.9.3-5.el9.aarch64.rpm 753 kB/s | 69 kB 00:00 (24/210): mpfr-4.1.0-7.el9.aarch64.rpm 2.0 MB/s | 242 kB 00:00 (25/210): popt-1.18-8.el9.aarch64.rpm 600 kB/s | 68 kB 00:00 (26/210): publicsuffix-list-dafsa-20210518-3.el 641 kB/s | 59 kB 00:00 (27/210): readline-8.1-4.el9.aarch64.rpm 2.1 MB/s | 214 kB 00:00 (28/210): sed-4.8-9.el9.aarch64.rpm 3.0 MB/s | 307 kB 00:00 (29/210): xz-5.2.5-8.el9_0.aarch64.rpm 2.5 MB/s | 230 kB 00:00 (30/210): xz-libs-5.2.5-8.el9_0.aarch64.rpm 991 kB/s | 92 kB 00:00 (31/210): gzip-1.12-1.el9.aarch64.rpm 1.7 MB/s | 166 kB 00:00 (32/210): keyutils-libs-1.6.3-1.el9.aarch64.rpm 359 kB/s | 34 kB 00:00 (33/210): libpkgconf-1.7.3-10.el9.aarch64.rpm 392 kB/s | 37 kB 00:00 (34/210): pkgconf-1.7.3-10.el9.aarch64.rpm 497 kB/s | 44 kB 00:00 (35/210): pkgconf-m4-1.7.3-10.el9.noarch.rpm 161 kB/s | 16 kB 00:00 (36/210): pkgconf-pkg-config-1.7.3-10.el9.aarch 139 kB/s | 12 kB 00:00 (37/210): zip-3.0-35.el9.aarch64.rpm 2.8 MB/s | 263 kB 00:00 (38/210): gmp-6.2.0-13.el9.aarch64.rpm 2.8 MB/s | 269 kB 00:00 (39/210): libffi-3.4.2-8.el9.aarch64.rpm 412 kB/s | 38 kB 00:00 (40/210): lua-libs-5.4.4-4.el9.aarch64.rpm 1.4 MB/s | 129 kB 00:00 (41/210): zlib-1.2.11-40.el9.aarch64.rpm 1.0 MB/s | 92 kB 00:00 (42/210): bash-5.1.8-9.el9.aarch64.rpm 13 MB/s | 1.7 MB 00:00 (43/210): file-5.39-16.el9.aarch64.rpm 560 kB/s | 52 kB 00:00 (44/210): libacl-2.3.1-4.el9.aarch64.rpm 253 kB/s | 24 kB 00:00 (45/210): setup-2.13.7-10.el9.noarch.rpm 1.7 MB/s | 150 kB 00:00 (46/210): file-libs-5.39-16.el9.aarch64.rpm 5.9 MB/s | 591 kB 00:00 (47/210): libevent-2.1.12-8.el9_4.aarch64.rpm 2.4 MB/s | 260 kB 00:00 (48/210): findutils-4.8.0-7.el9.aarch64.rpm 5.1 MB/s | 552 kB 00:00 (49/210): filesystem-3.16-5.el9.aarch64.rpm 35 MB/s | 4.8 MB 00:00 (50/210): gdbm-libs-1.23-1.el9.aarch64.rpm 610 kB/s | 59 kB 00:00 (51/210): libnghttp2-1.43.0-6.el9.aarch64.rpm 695 kB/s | 74 kB 00:00 (52/210): libeconf-0.4.1-4.el9.aarch64.rpm 179 kB/s | 29 kB 00:00 (53/210): libgcrypt-1.10.0-11.el9.aarch64.rpm 2.4 MB/s | 458 kB 00:00 (54/210): pcre-8.44-4.el9.aarch64.rpm 2.0 MB/s | 183 kB 00:00 (55/210): pcre2-10.40-6.el9.aarch64.rpm 2.1 MB/s | 220 kB 00:00 (56/210): pcre2-syntax-10.40-6.el9.noarch.rpm 1.5 MB/s | 144 kB 00:00 (57/210): bzip2-1.0.8-10.el9_5.aarch64.rpm 632 kB/s | 59 kB 00:00 (58/210): bzip2-libs-1.0.8-10.el9_5.aarch64.rpm 481 kB/s | 43 kB 00:00 (59/210): p11-kit-0.25.3-3.el9_5.aarch64.rpm 5.1 MB/s | 511 kB 00:00 (60/210): p11-kit-trust-0.25.3-3.el9_5.aarch64. 1.5 MB/s | 142 kB 00:00 (61/210): alternatives-1.24-2.el9.aarch64.rpm 441 kB/s | 41 kB 00:00 (62/210): coreutils-8.32-39.el9.aarch64.rpm 12 MB/s | 1.1 MB 00:00 (63/210): coreutils-common-8.32-39.el9.aarch64. 20 MB/s | 2.0 MB 00:00 (64/210): libselinux-3.6-3.el9.aarch64.rpm 942 kB/s | 87 kB 00:00 (65/210): libsemanage-3.6-5.el9_6.aarch64.rpm 1.1 MB/s | 118 kB 00:00 (66/210): libtasn1-4.16.0-9.el9.aarch64.rpm 784 kB/s | 76 kB 00:00 (67/210): libtool-ltdl-2.4.6-46.el9.aarch64.rpm 381 kB/s | 37 kB 00:00 (68/210): libzstd-1.5.5-1.el9.aarch64.rpm 3.0 MB/s | 277 kB 00:00 (69/210): openldap-2.6.8-4.el9.aarch64.rpm 2.8 MB/s | 285 kB 00:00 (70/210): krb5-libs-1.21.1-8.el9_6.aarch64.rpm 8.2 MB/s | 769 kB 00:00 (71/210): libarchive-3.5.3-6.el9_6.aarch64.rpm 4.1 MB/s | 385 kB 00:00 (72/210): zstd-1.5.5-1.el9.aarch64.rpm 1.6 MB/s | 360 kB 00:00 (73/210): libdb-5.3.28-57.el9_6.aarch64.rpm 7.5 MB/s | 710 kB 00:00 (74/210): which-2.21-30.el9_6.aarch64.rpm 420 kB/s | 41 kB 00:00 (75/210): crypto-policies-20250905-1.git377cc42 982 kB/s | 90 kB 00:00 (76/210): cyrus-sasl-lib-2.1.27-22.el9.aarch64. 7.9 MB/s | 754 kB 00:00 (77/210): elfutils-0.193-1.el9.aarch64.rpm 4.1 MB/s | 568 kB 00:00 (78/210): elfutils-debuginfod-client-0.193-1.el 426 kB/s | 43 kB 00:00 (79/210): elfutils-default-yama-scope-0.193-1.e 96 kB/s | 9.7 kB 00:00 (80/210): elfutils-libelf-0.193-1.el9.aarch64.r 1.9 MB/s | 204 kB 00:00 (81/210): elfutils-libs-0.193-1.el9.aarch64.rpm 2.9 MB/s | 265 kB 00:00 (82/210): libcap-2.48-10.el9.aarch64.rpm 748 kB/s | 70 kB 00:00 (83/210): libcom_err-1.46.5-8.el9.aarch64.rpm 267 kB/s | 26 kB 00:00 (84/210): libgcc-11.5.0-11.el9.aarch64.rpm 792 kB/s | 79 kB 00:00 (85/210): libgomp-11.5.0-11.el9.aarch64.rpm 2.2 MB/s | 256 kB 00:00 (86/210): libsepol-3.6-3.el9.aarch64.rpm 3.3 MB/s | 319 kB 00:00 (87/210): ncurses-base-6.2-12.20210508.el9.noar 1.0 MB/s | 96 kB 00:00 (88/210): libstdc++-11.5.0-11.el9.aarch64.rpm 4.2 MB/s | 705 kB 00:00 (89/210): ncurses-libs-6.2-12.20210508.el9.aarc 3.0 MB/s | 317 kB 00:00 (90/210): pam-1.5.1-26.el9_6.aarch64.rpm 6.5 MB/s | 621 kB 00:00 (91/210): openssl-fips-provider-3.0.7-8.el9.aar 56 kB/s | 9.1 kB 00:00 (92/210): openssl-fips-provider-so-3.0.7-8.el9. 4.2 MB/s | 513 kB 00:00 (93/210): rpm-build-libs-4.16.1.3-39.el9.aarch6 929 kB/s | 85 kB 00:00 (94/210): rpm-libs-4.16.1.3-39.el9.aarch64.rpm 3.2 MB/s | 300 kB 00:00 (95/210): shadow-utils-4.9-15.el9.aarch64.rpm 11 MB/s | 1.2 MB 00:00 (96/210): audit-libs-3.1.5-7.el9.aarch64.rpm 1.3 MB/s | 117 kB 00:00 (97/210): ncurses-6.2-12.20210508.el9.aarch64.r 4.2 MB/s | 404 kB 00:00 (98/210): unzip-6.0-59.el9.aarch64.rpm 1.5 MB/s | 178 kB 00:00 (99/210): rpm-4.16.1.3-39.el9.aarch64.rpm 5.1 MB/s | 531 kB 00:00 (100/210): glibc-common-2.34-231.el9_7.2.aarch6 3.0 MB/s | 297 kB 00:00 (101/210): glibc-2.34-231.el9_7.2.aarch64.rpm 16 MB/s | 1.7 MB 00:00 (102/210): glibc-gconv-extra-2.34-231.el9_7.2.a 17 MB/s | 1.7 MB 00:00 (103/210): glibc-minimal-langpack-2.34-231.el9_ 240 kB/s | 22 kB 00:00 (104/210): redhat-release-9.7-0.7.el9.aarch64.r 602 kB/s | 53 kB 00:00 (105/210): sqlite-libs-3.34.1-9.el9_7.aarch64.r 6.3 MB/s | 636 kB 00:00 (106/210): ca-certificates-2025.2.80_v9.0.305-9 11 MB/s | 1.0 MB 00:00 (107/210): libxml2-2.9.13-14.el9_7.aarch64.rpm 7.6 MB/s | 730 kB 00:00 (108/210): libssh-0.10.4-17.el9_7.aarch64.rpm 2.2 MB/s | 210 kB 00:00 (109/210): tzdata-2025c-1.el9.noarch.rpm 9.2 MB/s | 904 kB 00:00 (110/210): systemd-libs-252-55.el9_7.7.aarch64. 6.3 MB/s | 644 kB 00:00 (111/210): libssh-config-0.10.4-17.el9_7.noarch 82 kB/s | 8.1 kB 00:00 (112/210): binutils-gold-2.35.2-67.el9_7.1.aarc 9.0 MB/s | 881 kB 00:00 (113/210): binutils-2.35.2-67.el9_7.1.aarch64.r 35 MB/s | 4.8 MB 00:00 (114/210): tar-1.34-9.el9_7.aarch64.rpm 9.0 MB/s | 877 kB 00:00 (115/210): libcurl-7.76.1-35.el9_7.3.aarch64.rp 3.1 MB/s | 278 kB 00:00 (116/210): curl-7.76.1-35.el9_7.3.aarch64.rpm 2.2 MB/s | 289 kB 00:00 (117/210): openssl-3.5.1-7.el9_7.aarch64.rpm 14 MB/s | 1.5 MB 00:00 (118/210): openssl-libs-3.5.1-7.el9_7.aarch64.r 21 MB/s | 2.2 MB 00:00 (119/210): libblkid-2.37.4-21.el9_7.aarch64.rpm 995 kB/s | 111 kB 00:00 (120/210): libfdisk-2.37.4-21.el9_7.aarch64.rpm 1.7 MB/s | 153 kB 00:00 (121/210): libmount-2.37.4-21.el9_7.aarch64.rpm 1.5 MB/s | 136 kB 00:00 (122/210): libsmartcols-2.37.4-21.el9_7.aarch64 650 kB/s | 66 kB 00:00 (123/210): libuuid-2.37.4-21.el9_7.aarch64.rpm 357 kB/s | 31 kB 00:00 (124/210): util-linux-2.37.4-21.el9_7.aarch64.r 22 MB/s | 2.3 MB 00:00 (125/210): util-linux-core-2.37.4-21.el9_7.aarc 4.9 MB/s | 462 kB 00:00 (126/210): libbrotli-1.0.9-9.el9_7.aarch64.rpm 3.2 MB/s | 318 kB 00:00 (127/210): perl-Exporter-5.74-461.el9.noarch.rp 384 kB/s | 34 kB 00:00 (128/210): perl-File-Temp-0.231.100-4.el9.noarc 630 kB/s | 63 kB 00:00 (129/210): perl-IO-Socket-IP-0.41-5.el9.noarch. 469 kB/s | 45 kB 00:00 (130/210): perl-Mozilla-CA-20200520-6.el9.noarc 162 kB/s | 14 kB 00:00 (131/210): perl-Term-Cap-1.17-460.el9.noarch.rp 266 kB/s | 24 kB 00:00 (132/210): perl-Time-Local-1.300-7.el9.noarch.r 378 kB/s | 37 kB 00:00 (133/210): perl-parent-0.238-460.el9.noarch.rpm 164 kB/s | 16 kB 00:00 (134/210): perl-srpm-macros-1-41.el9.noarch.rpm 102 kB/s | 9.4 kB 00:00 (135/210): rust-srpm-macros-17-4.el9.noarch.rpm 123 kB/s | 11 kB 00:00 (136/210): ghc-srpm-macros-1.5.0-6.el9.noarch.r 100 kB/s | 9.0 kB 00:00 (137/210): openblas-srpm-macros-2-11.el9.noarch 95 kB/s | 8.6 kB 00:00 (138/210): patch-2.7.6-16.el9.aarch64.rpm 1.4 MB/s | 126 kB 00:00 (139/210): perl-Digest-MD5-2.58-4.el9.aarch64.r 441 kB/s | 40 kB 00:00 (140/210): perl-MIME-Base64-3.16-4.el9.aarch64. 339 kB/s | 34 kB 00:00 (141/210): perl-Pod-Simple-3.42-4.el9.noarch.rp 2.5 MB/s | 229 kB 00:00 (142/210): perl-Pod-Usage-2.01-4.el9.noarch.rpm 465 kB/s | 43 kB 00:00 (143/210): perl-Term-ANSIColor-5.01-461.el9.noa 560 kB/s | 51 kB 00:00 (144/210): perl-URI-5.09-3.el9.noarch.rpm 1.4 MB/s | 125 kB 00:00 (145/210): perl-Text-ParseWords-3.30-460.el9.no 149 kB/s | 18 kB 00:00 (146/210): perl-constant-1.33-461.el9.noarch.rp 230 kB/s | 25 kB 00:00 (147/210): perl-File-Path-2.18-4.el9.noarch.rpm 420 kB/s | 38 kB 00:00 (148/210): perl-PathTools-3.78-461.el9.aarch64. 1.0 MB/s | 92 kB 00:00 (149/210): perl-Pod-Escapes-1.07-460.el9.noarch 234 kB/s | 22 kB 00:00 (150/210): perl-Pod-Perldoc-3.28.01-461.el9.noa 876 kB/s | 92 kB 00:00 (151/210): perl-libnet-3.13-4.el9.noarch.rpm 1.3 MB/s | 134 kB 00:00 (152/210): perl-podlators-4.14-460.el9.noarch.r 1.2 MB/s | 118 kB 00:00 (153/210): fonts-srpm-macros-2.0.5-7.el9.1.noar 331 kB/s | 29 kB 00:00 (154/210): lua-srpm-macros-1-6.el9.noarch.rpm 115 kB/s | 10 kB 00:00 (155/210): ocaml-srpm-macros-6-6.el9.noarch.rpm 98 kB/s | 9.1 kB 00:00 (156/210): perl-Data-Dumper-2.174-462.el9.aarch 642 kB/s | 57 kB 00:00 (157/210): perl-Carp-1.50-460.el9.noarch.rpm 342 kB/s | 31 kB 00:00 (158/210): perl-Digest-1.19-4.el9.noarch.rpm 251 kB/s | 29 kB 00:00 (159/210): perl-Getopt-Long-2.52-4.el9.noarch.r 690 kB/s | 64 kB 00:00 (160/210): perl-Encode-3.08-462.el9.aarch64.rpm 17 MB/s | 1.7 MB 00:00 (161/210): perl-Socket-2.031-4.el9.aarch64.rpm 563 kB/s | 58 kB 00:00 (162/210): perl-Storable-3.21-460.el9.aarch64.r 1.0 MB/s | 96 kB 00:00 (163/210): perl-Text-Tabs+Wrap-2013.0523-460.el 289 kB/s | 25 kB 00:00 (164/210): qt5-srpm-macros-5.15.9-1.el9.noarch. 99 kB/s | 9.1 kB 00:00 (165/210): perl-HTTP-Tiny-0.076-462.el9.noarch. 640 kB/s | 57 kB 00:00 (166/210): perl-Scalar-List-Utils-1.56-462.el9. 804 kB/s | 74 kB 00:00 (167/210): python-srpm-macros-3.9-54.el9.noarch 196 kB/s | 18 kB 00:00 (168/210): perl-IO-Socket-SSL-2.073-2.el9.noarc 2.4 MB/s | 221 kB 00:00 (169/210): pyproject-srpm-macros-1.16.2-1.el9.n 160 kB/s | 14 kB 00:00 (170/210): perl-B-1.80-481.1.el9_6.aarch64.rpm 2.0 MB/s | 180 kB 00:00 (171/210): perl-Class-Struct-0.66-481.1.el9_6.n 244 kB/s | 22 kB 00:00 (172/210): perl-AutoLoader-5.74-481.1.el9_6.noa 192 kB/s | 21 kB 00:00 (173/210): perl-Errno-1.30-481.1.el9_6.aarch64. 157 kB/s | 14 kB 00:00 (174/210): perl-Fcntl-1.13-481.1.el9_6.aarch64. 217 kB/s | 20 kB 00:00 (175/210): perl-File-Basename-2.85-481.1.el9_6. 183 kB/s | 17 kB 00:00 (176/210): perl-File-stat-1.09-481.1.el9_6.noar 164 kB/s | 17 kB 00:00 (177/210): perl-FileHandle-2.03-481.1.el9_6.noa 154 kB/s | 15 kB 00:00 (178/210): perl-Getopt-Std-1.12-481.1.el9_6.noa 150 kB/s | 15 kB 00:00 (179/210): perl-IPC-Open3-1.21-481.1.el9_6.noar 252 kB/s | 22 kB 00:00 (180/210): perl-IO-1.43-481.1.el9_6.aarch64.rpm 976 kB/s | 88 kB 00:00 (181/210): perl-POSIX-1.94-481.1.el9_6.aarch64. 1.0 MB/s | 96 kB 00:00 (182/210): perl-SelectSaver-1.02-481.1.el9_6.no 117 kB/s | 11 kB 00:00 (183/210): perl-Symbol-1.08-481.1.el9_6.noarch. 142 kB/s | 14 kB 00:00 (184/210): perl-base-2.27-481.1.el9_6.noarch.rp 153 kB/s | 16 kB 00:00 (185/210): perl-if-0.60.800-481.1.el9_6.noarch. 149 kB/s | 14 kB 00:00 (186/210): perl-interpreter-5.32.1-481.1.el9_6. 769 kB/s | 70 kB 00:00 (187/210): perl-libs-5.32.1-481.1.el9_6.aarch64 21 MB/s | 2.2 MB 00:00 (188/210): perl-mro-1.23-481.1.el9_6.aarch64.rp 305 kB/s | 27 kB 00:00 (189/210): perl-overload-1.31-481.1.el9_6.noarc 479 kB/s | 45 kB 00:00 (190/210): perl-overloading-0.02-481.1.el9_6.no 139 kB/s | 12 kB 00:00 (191/210): perl-subs-1.03-481.1.el9_6.noarch.rp 123 kB/s | 11 kB 00:00 (192/210): perl-vars-1.05-481.1.el9_6.noarch.rp 128 kB/s | 13 kB 00:00 (193/210): debugedit-5.0-11.el9.aarch64.rpm 692 kB/s | 77 kB 00:00 (194/210): efi-srpm-macros-6-4.el9.noarch.rpm 233 kB/s | 21 kB 00:00 (195/210): perl-Net-SSLeay-1.94-3.el9.aarch64.r 4.4 MB/s | 415 kB 00:00 (196/210): dwz-0.16-1.el9.aarch64.rpm 1.3 MB/s | 134 kB 00:00 (197/210): kernel-srpm-macros-1.0-14.el9.noarch 155 kB/s | 14 kB 00:00 (198/210): gdb-minimal-16.3-2.el9.aarch64.rpm 35 MB/s | 4.2 MB 00:00 (199/210): redhat-rpm-config-210-1.el9.noarch.r 770 kB/s | 70 kB 00:00 (200/210): ansible-srpm-macros-1-16.el9.noarch. 1.4 MB/s | 21 kB 00:00 (201/210): epel-rpm-macros-9-17.el9.noarch.rpm 6.8 MB/s | 15 kB 00:00 (202/210): forge-srpm-macros-0.4.0-1.el9.noarch 9.9 MB/s | 19 kB 00:00 (203/210): fpc-srpm-macros-1.3-7.el9.noarch.rpm 5.0 MB/s | 7.5 kB 00:00 (204/210): ghc-srpm-macros-epel-1.9.1-1.el9.noa 2.7 MB/s | 7.5 kB 00:00 (205/210): go-srpm-macros-epel-3.8.0-1.el9.noar 7.1 MB/s | 26 kB 00:00 (206/210): qt6-srpm-macros-6.6.2-1.el9.noarch.r 4.7 MB/s | 8.7 kB 00:00 (207/210): rpmautospec-rpm-macros-0.8.1-11.el9. 7.5 MB/s | 11 kB 00:00 (208/210): rust-srpm-macros-epel-26.3-1.el9.noa 6.9 MB/s | 10 kB 00:00 (209/210): rpm-build-4.16.1.3-39.el9.aarch64.rp 721 kB/s | 66 kB 00:00 (210/210): go-srpm-macros-3.6.0-12.el9_7.noarch 305 kB/s | 27 kB 00:00 -------------------------------------------------------------------------------- Total 9.9 MB/s | 68 MB 00:06 Red Hat Enterprise Linux - BaseOS 3.5 MB/s | 3.6 kB 00:00 Importing GPG key 0xFD431D51: Userid : "Red Hat, Inc. (release key 2) " Fingerprint: 567E 347A D004 4ADE 55BA 8A5F 199E 2F91 FD43 1D51 From : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release Key imported successfully Importing GPG key 0x5A6340B3: Userid : "Red Hat, Inc. (auxiliary key 3) " Fingerprint: 7E46 2425 8C40 6535 D56D 6F13 5054 E4A4 5A63 40B3 From : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release Key imported successfully Red Hat Enterprise Linux - BaseOS 16 MB/s | 16 kB 00:00 Extra Packages for Enterprise Linux 9 - aarch64 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x3228467C: Userid : "Fedora (epel9) " Fingerprint: FF8A D134 4597 106E CE81 3B91 8A38 72BF 3228 467C From : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-9 Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.16-5.el9.aarch64 1/1 Preparing : 1/1 Installing : rust-srpm-macros-17-4.el9.noarch 1/210 Installing : redhat-release-9.7-0.7.el9.aarch64 2/210 Installing : setup-2.13.7-10.el9.noarch 3/210 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.13.7-10.el9.noarch 3/210 Installing : filesystem-3.16-5.el9.aarch64 4/210 Installing : basesystem-11-13.el9.noarch 5/210 Installing : rust-srpm-macros-epel-26.3-1.el9.noarch 6/210 Installing : qt6-srpm-macros-6.6.2-1.el9.noarch 7/210 Installing : ghc-srpm-macros-epel-1.9.1-1.el9.noarch 8/210 Installing : fpc-srpm-macros-1.3-7.el9.noarch 9/210 Installing : ansible-srpm-macros-1-16.el9.noarch 10/210 Installing : qt5-srpm-macros-5.15.9-1.el9.noarch 11/210 Installing : ocaml-srpm-macros-6-6.el9.noarch 12/210 Installing : openblas-srpm-macros-2-11.el9.noarch 13/210 Installing : ghc-srpm-macros-1.5.0-6.el9.noarch 14/210 Installing : perl-srpm-macros-1-41.el9.noarch 15/210 Installing : libssh-config-0.10.4-17.el9_7.noarch 16/210 Installing : tzdata-2025c-1.el9.noarch 17/210 Installing : ncurses-base-6.2-12.20210508.el9.noarch 18/210 Installing : ncurses-libs-6.2-12.20210508.el9.aarch64 19/210 Installing : bash-5.1.8-9.el9.aarch64 20/210 Running scriptlet: bash-5.1.8-9.el9.aarch64 20/210 Installing : libgcc-11.5.0-11.el9.aarch64 21/210 Running scriptlet: libgcc-11.5.0-11.el9.aarch64 21/210 Installing : glibc-common-2.34-231.el9_7.2.aarch64 22/210 Installing : glibc-gconv-extra-2.34-231.el9_7.2.aarch64 23/210 Running scriptlet: glibc-gconv-extra-2.34-231.el9_7.2.aarch64 23/210 Installing : glibc-minimal-langpack-2.34-231.el9_7.2.aarch64 24/210 Running scriptlet: glibc-2.34-231.el9_7.2.aarch64 25/210 Installing : glibc-2.34-231.el9_7.2.aarch64 25/210 Running scriptlet: glibc-2.34-231.el9_7.2.aarch64 25/210 Installing : zlib-1.2.11-40.el9.aarch64 26/210 Installing : xz-libs-5.2.5-8.el9_0.aarch64 27/210 Installing : bzip2-libs-1.0.8-10.el9_5.aarch64 28/210 Installing : libzstd-1.5.5-1.el9.aarch64 29/210 Installing : elfutils-libelf-0.193-1.el9.aarch64 30/210 Installing : libxcrypt-4.4.18-3.el9.aarch64 31/210 Installing : libstdc++-11.5.0-11.el9.aarch64 32/210 Installing : libuuid-2.37.4-21.el9_7.aarch64 33/210 Installing : libattr-2.5.1-3.el9.aarch64 34/210 Installing : libacl-2.3.1-4.el9.aarch64 35/210 Installing : popt-1.18-8.el9.aarch64 36/210 Installing : gmp-1:6.2.0-13.el9.aarch64 37/210 Installing : libcap-2.48-10.el9.aarch64 38/210 Installing : lz4-libs-1.9.3-5.el9.aarch64 39/210 Installing : readline-8.1-4.el9.aarch64 40/210 Installing : libcom_err-1.46.5-8.el9.aarch64 41/210 Installing : crypto-policies-20250905-1.git377cc42.el9_7.noar 42/210 Running scriptlet: crypto-policies-20250905-1.git377cc42.el9_7.noar 42/210 Installing : mpfr-4.1.0-7.el9.aarch64 43/210 Installing : dwz-0.16-1.el9.aarch64 44/210 Installing : unzip-6.0-59.el9.aarch64 45/210 Installing : file-libs-5.39-16.el9.aarch64 46/210 Installing : file-5.39-16.el9.aarch64 47/210 Installing : sqlite-libs-3.34.1-9.el9_7.aarch64 48/210 Installing : libcap-ng-0.8.2-7.el9.aarch64 49/210 Installing : audit-libs-3.1.5-7.el9.aarch64 50/210 Installing : libsigsegv-2.13-4.el9.aarch64 51/210 Installing : gawk-5.1.0-6.el9.aarch64 52/210 Installing : libunistring-0.9.10-15.el9.aarch64 53/210 Installing : libidn2-2.3.0-7.el9.aarch64 54/210 Installing : libffi-3.4.2-8.el9.aarch64 55/210 Installing : lua-libs-5.4.4-4.el9.aarch64 56/210 Installing : alternatives-1.24-2.el9.aarch64 57/210 Installing : libtasn1-4.16.0-9.el9.aarch64 58/210 Installing : p11-kit-0.25.3-3.el9_5.aarch64 59/210 Installing : libsepol-3.6-3.el9.aarch64 60/210 Installing : libsmartcols-2.37.4-21.el9_7.aarch64 61/210 Installing : p11-kit-trust-0.25.3-3.el9_5.aarch64 62/210 Running scriptlet: p11-kit-trust-0.25.3-3.el9_5.aarch64 62/210 Installing : zip-3.0-35.el9.aarch64 63/210 Installing : zstd-1.5.5-1.el9.aarch64 64/210 Running scriptlet: groff-base-1.22.4-10.el9.aarch64 65/210 Installing : groff-base-1.22.4-10.el9.aarch64 65/210 Running scriptlet: groff-base-1.22.4-10.el9.aarch64 65/210 Installing : bzip2-1.0.8-10.el9_5.aarch64 66/210 Installing : libxml2-2.9.13-14.el9_7.aarch64 67/210 Installing : info-6.7-15.el9.aarch64 68/210 Installing : ed-1.14.2-12.el9.aarch64 69/210 Installing : cpio-2.13-16.el9.aarch64 70/210 Installing : diffutils-3.7-12.el9.aarch64 71/210 Installing : json-c-0.14-11.el9.aarch64 72/210 Installing : libgpg-error-1.42-5.el9.aarch64 73/210 Installing : libgcrypt-1.10.0-11.el9.aarch64 74/210 Installing : libverto-0.3.2-3.el9.aarch64 75/210 Installing : keyutils-libs-1.6.3-1.el9.aarch64 76/210 Installing : libpkgconf-1.7.3-10.el9.aarch64 77/210 Installing : pkgconf-1.7.3-10.el9.aarch64 78/210 Installing : gdbm-libs-1:1.23-1.el9.aarch64 79/210 Installing : libeconf-0.4.1-4.el9.aarch64 80/210 Installing : libnghttp2-1.43.0-6.el9.aarch64 81/210 Installing : pcre-8.44-4.el9.aarch64 82/210 Installing : grep-3.6-5.el9.aarch64 83/210 Installing : xz-5.2.5-8.el9_0.aarch64 84/210 Installing : libtool-ltdl-2.4.6-46.el9.aarch64 85/210 Installing : libdb-5.3.28-57.el9_6.aarch64 86/210 Installing : libgomp-11.5.0-11.el9.aarch64 87/210 Installing : ncurses-6.2-12.20210508.el9.aarch64 88/210 Installing : libbrotli-1.0.9-9.el9_7.aarch64 89/210 Installing : elfutils-default-yama-scope-0.193-1.el9.noarch 90/210 Running scriptlet: elfutils-default-yama-scope-0.193-1.el9.noarch 90/210 Installing : elfutils-libs-0.193-1.el9.aarch64 91/210 Installing : coreutils-common-8.32-39.el9.aarch64 92/210 Installing : pcre2-syntax-10.40-6.el9.noarch 93/210 Installing : pcre2-10.40-6.el9.aarch64 94/210 Installing : libselinux-3.6-3.el9.aarch64 95/210 Installing : sed-4.8-9.el9.aarch64 96/210 Installing : findutils-1:4.8.0-7.el9.aarch64 97/210 Installing : openssl-fips-provider-so-3.0.7-8.el9.aarch64 98/210 Installing : openssl-fips-provider-3.0.7-8.el9.aarch64 99/210 Installing : openssl-libs-1:3.5.1-7.el9_7.aarch64 100/210 Installing : coreutils-8.32-39.el9.aarch64 101/210 Running scriptlet: ca-certificates-2025.2.80_v9.0.305-91.el9.noarch 102/210 Installing : ca-certificates-2025.2.80_v9.0.305-91.el9.noarch 102/210 Running scriptlet: ca-certificates-2025.2.80_v9.0.305-91.el9.noarch 102/210 Installing : libblkid-2.37.4-21.el9_7.aarch64 103/210 Running scriptlet: libblkid-2.37.4-21.el9_7.aarch64 103/210 Installing : krb5-libs-1.21.1-8.el9_6.aarch64 104/210 Installing : libmount-2.37.4-21.el9_7.aarch64 105/210 Installing : gzip-1.12-1.el9.aarch64 106/210 Installing : cracklib-2.9.6-27.el9.aarch64 107/210 Installing : systemd-libs-252-55.el9_7.7.aarch64 108/210 Running scriptlet: systemd-libs-252-55.el9_7.7.aarch64 108/210 Installing : libarchive-3.5.3-6.el9_6.aarch64 109/210 Installing : util-linux-core-2.37.4-21.el9_7.aarch64 110/210 Running scriptlet: util-linux-core-2.37.4-21.el9_7.aarch64 110/210 Installing : cracklib-dicts-2.9.6-27.el9.aarch64 111/210 Installing : cyrus-sasl-lib-2.1.27-22.el9.aarch64 112/210 Installing : libssh-0.10.4-17.el9_7.aarch64 113/210 Installing : libfdisk-2.37.4-21.el9_7.aarch64 114/210 Installing : perl-Digest-1.19-4.el9.noarch 115/210 Installing : perl-Digest-MD5-2.58-4.el9.aarch64 116/210 Installing : perl-B-1.80-481.1.el9_6.aarch64 117/210 Installing : perl-FileHandle-2.03-481.1.el9_6.noarch 118/210 Installing : perl-Data-Dumper-2.174-462.el9.aarch64 119/210 Installing : perl-libnet-3.13-4.el9.noarch 120/210 Installing : perl-AutoLoader-5.74-481.1.el9_6.noarch 121/210 Installing : perl-base-2.27-481.1.el9_6.noarch 122/210 Installing : perl-URI-5.09-3.el9.noarch 123/210 Installing : perl-Time-Local-2:1.300-7.el9.noarch 124/210 Installing : perl-Mozilla-CA-20200520-6.el9.noarch 125/210 Installing : perl-if-0.60.800-481.1.el9_6.noarch 126/210 Installing : perl-IO-Socket-IP-0.41-5.el9.noarch 127/210 Installing : perl-File-Path-2.18-4.el9.noarch 128/210 Installing : perl-Pod-Escapes-1:1.07-460.el9.noarch 129/210 Installing : perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch 130/210 Installing : perl-IO-Socket-SSL-2.073-2.el9.noarch 131/210 Installing : perl-Net-SSLeay-1.94-3.el9.aarch64 132/210 Installing : perl-Term-ANSIColor-5.01-461.el9.noarch 133/210 Installing : perl-Class-Struct-0.66-481.1.el9_6.noarch 134/210 Installing : perl-POSIX-1.94-481.1.el9_6.aarch64 135/210 Installing : perl-IPC-Open3-1.21-481.1.el9_6.noarch 136/210 Installing : perl-subs-1.03-481.1.el9_6.noarch 137/210 Installing : perl-Term-Cap-1.17-460.el9.noarch 138/210 Installing : perl-File-Temp-1:0.231.100-4.el9.noarch 139/210 Installing : perl-Pod-Simple-1:3.42-4.el9.noarch 140/210 Installing : perl-HTTP-Tiny-0.076-462.el9.noarch 141/210 Installing : perl-Socket-4:2.031-4.el9.aarch64 142/210 Installing : perl-SelectSaver-1.02-481.1.el9_6.noarch 143/210 Installing : perl-Symbol-1.08-481.1.el9_6.noarch 144/210 Installing : perl-File-stat-1.09-481.1.el9_6.noarch 145/210 Installing : perl-podlators-1:4.14-460.el9.noarch 146/210 Installing : perl-Pod-Perldoc-3.28.01-461.el9.noarch 147/210 Installing : perl-Text-ParseWords-3.30-460.el9.noarch 148/210 Installing : perl-Fcntl-1.13-481.1.el9_6.aarch64 149/210 Installing : perl-mro-1.23-481.1.el9_6.aarch64 150/210 Installing : perl-IO-1.43-481.1.el9_6.aarch64 151/210 Installing : perl-overloading-0.02-481.1.el9_6.noarch 152/210 Installing : perl-Pod-Usage-4:2.01-4.el9.noarch 153/210 Installing : perl-parent-1:0.238-460.el9.noarch 154/210 Installing : perl-MIME-Base64-3.16-4.el9.aarch64 155/210 Installing : perl-constant-1.33-461.el9.noarch 156/210 Installing : perl-Scalar-List-Utils-4:1.56-462.el9.aarch64 157/210 Installing : perl-Errno-1.30-481.1.el9_6.aarch64 158/210 Installing : perl-File-Basename-2.85-481.1.el9_6.noarch 159/210 Installing : perl-Getopt-Std-1.12-481.1.el9_6.noarch 160/210 Installing : perl-Storable-1:3.21-460.el9.aarch64 161/210 Installing : perl-overload-1.31-481.1.el9_6.noarch 162/210 Installing : perl-vars-1.05-481.1.el9_6.noarch 163/210 Installing : perl-Getopt-Long-1:2.52-4.el9.noarch 164/210 Installing : perl-Exporter-5.74-461.el9.noarch 165/210 Installing : perl-Carp-1.50-460.el9.noarch 166/210 Installing : perl-PathTools-3.78-461.el9.aarch64 167/210 Installing : perl-Encode-4:3.08-462.el9.aarch64 168/210 Installing : perl-libs-4:5.32.1-481.1.el9_6.aarch64 169/210 Installing : perl-interpreter-4:5.32.1-481.1.el9_6.aarch64 170/210 Installing : kernel-srpm-macros-1.0-14.el9.noarch 171/210 Installing : openssl-1:3.5.1-7.el9_7.aarch64 172/210 Installing : libpwquality-1.4.4-8.el9.aarch64 173/210 Installing : pam-1.5.1-26.el9_6.aarch64 174/210 Installing : libevent-2.1.12-8.el9_4.aarch64 175/210 Installing : libsemanage-3.6-5.el9_6.aarch64 176/210 Installing : shadow-utils-2:4.9-15.el9.aarch64 177/210 Running scriptlet: libutempter-1.2.1-6.el9.aarch64 178/210 Installing : libutempter-1.2.1-6.el9.aarch64 178/210 Installing : openldap-2.6.8-4.el9.aarch64 179/210 Installing : tar-2:1.34-9.el9_7.aarch64 180/210 Installing : patch-2.7.6-16.el9.aarch64 181/210 Installing : pkgconf-m4-1.7.3-10.el9.noarch 182/210 Installing : pkgconf-pkg-config-1.7.3-10.el9.aarch64 183/210 Installing : publicsuffix-list-dafsa-20210518-3.el9.noarch 184/210 Installing : libpsl-0.21.1-5.el9.aarch64 185/210 Installing : libcurl-7.76.1-35.el9_7.3.aarch64 186/210 Installing : elfutils-debuginfod-client-0.193-1.el9.aarch64 187/210 Installing : binutils-gold-2.35.2-67.el9_7.1.aarch64 188/210 Installing : binutils-2.35.2-67.el9_7.1.aarch64 189/210 Running scriptlet: binutils-2.35.2-67.el9_7.1.aarch64 189/210 Installing : elfutils-0.193-1.el9.aarch64 190/210 Installing : gdb-minimal-16.3-2.el9.aarch64 191/210 Installing : debugedit-5.0-11.el9.aarch64 192/210 Installing : curl-7.76.1-35.el9_7.3.aarch64 193/210 Installing : rpm-libs-4.16.1.3-39.el9.aarch64 194/210 Installing : rpm-4.16.1.3-39.el9.aarch64 195/210 Installing : lua-srpm-macros-1-6.el9.noarch 196/210 Installing : efi-srpm-macros-6-4.el9.noarch 197/210 Installing : rpmautospec-rpm-macros-0.8.1-11.el9.noarch 198/210 Installing : rpm-build-libs-4.16.1.3-39.el9.aarch64 199/210 Installing : fonts-srpm-macros-1:2.0.5-7.el9.1.noarch 200/210 Installing : python-srpm-macros-3.9-54.el9.noarch 201/210 Installing : go-srpm-macros-3.6.0-12.el9_7.noarch 202/210 Installing : redhat-rpm-config-210-1.el9.noarch 203/210 Installing : rpm-build-4.16.1.3-39.el9.aarch64 204/210 Installing : pyproject-srpm-macros-1.16.2-1.el9.noarch 205/210 Installing : forge-srpm-macros-0.4.0-1.el9.noarch 206/210 Installing : go-srpm-macros-epel-3.8.0-1.el9.noarch 207/210 Installing : epel-rpm-macros-9-17.el9.noarch 208/210 Installing : util-linux-2.37.4-21.el9_7.aarch64 209/210 Installing : which-2.21-30.el9_6.aarch64 210/210 Running scriptlet: filesystem-3.16-5.el9.aarch64 210/210 Running scriptlet: ca-certificates-2025.2.80_v9.0.305-91.el9.noarch 210/210 Running scriptlet: rpm-4.16.1.3-39.el9.aarch64 210/210 Running scriptlet: which-2.21-30.el9_6.aarch64 210/210 Verifying : basesystem-11-13.el9.noarch 1/210 Verifying : cpio-2.13-16.el9.aarch64 2/210 Verifying : cracklib-2.9.6-27.el9.aarch64 3/210 Verifying : cracklib-dicts-2.9.6-27.el9.aarch64 4/210 Verifying : diffutils-3.7-12.el9.aarch64 5/210 Verifying : ed-1.14.2-12.el9.aarch64 6/210 Verifying : gawk-5.1.0-6.el9.aarch64 7/210 Verifying : grep-3.6-5.el9.aarch64 8/210 Verifying : groff-base-1.22.4-10.el9.aarch64 9/210 Verifying : info-6.7-15.el9.aarch64 10/210 Verifying : json-c-0.14-11.el9.aarch64 11/210 Verifying : libattr-2.5.1-3.el9.aarch64 12/210 Verifying : libcap-ng-0.8.2-7.el9.aarch64 13/210 Verifying : libgpg-error-1.42-5.el9.aarch64 14/210 Verifying : libidn2-2.3.0-7.el9.aarch64 15/210 Verifying : libpsl-0.21.1-5.el9.aarch64 16/210 Verifying : libpwquality-1.4.4-8.el9.aarch64 17/210 Verifying : libsigsegv-2.13-4.el9.aarch64 18/210 Verifying : libunistring-0.9.10-15.el9.aarch64 19/210 Verifying : libutempter-1.2.1-6.el9.aarch64 20/210 Verifying : libverto-0.3.2-3.el9.aarch64 21/210 Verifying : libxcrypt-4.4.18-3.el9.aarch64 22/210 Verifying : lz4-libs-1.9.3-5.el9.aarch64 23/210 Verifying : mpfr-4.1.0-7.el9.aarch64 24/210 Verifying : popt-1.18-8.el9.aarch64 25/210 Verifying : publicsuffix-list-dafsa-20210518-3.el9.noarch 26/210 Verifying : readline-8.1-4.el9.aarch64 27/210 Verifying : sed-4.8-9.el9.aarch64 28/210 Verifying : xz-5.2.5-8.el9_0.aarch64 29/210 Verifying : xz-libs-5.2.5-8.el9_0.aarch64 30/210 Verifying : gzip-1.12-1.el9.aarch64 31/210 Verifying : keyutils-libs-1.6.3-1.el9.aarch64 32/210 Verifying : libpkgconf-1.7.3-10.el9.aarch64 33/210 Verifying : pkgconf-1.7.3-10.el9.aarch64 34/210 Verifying : pkgconf-m4-1.7.3-10.el9.noarch 35/210 Verifying : pkgconf-pkg-config-1.7.3-10.el9.aarch64 36/210 Verifying : zip-3.0-35.el9.aarch64 37/210 Verifying : gmp-1:6.2.0-13.el9.aarch64 38/210 Verifying : libffi-3.4.2-8.el9.aarch64 39/210 Verifying : lua-libs-5.4.4-4.el9.aarch64 40/210 Verifying : zlib-1.2.11-40.el9.aarch64 41/210 Verifying : bash-5.1.8-9.el9.aarch64 42/210 Verifying : file-5.39-16.el9.aarch64 43/210 Verifying : libacl-2.3.1-4.el9.aarch64 44/210 Verifying : setup-2.13.7-10.el9.noarch 45/210 Verifying : file-libs-5.39-16.el9.aarch64 46/210 Verifying : libevent-2.1.12-8.el9_4.aarch64 47/210 Verifying : filesystem-3.16-5.el9.aarch64 48/210 Verifying : findutils-1:4.8.0-7.el9.aarch64 49/210 Verifying : gdbm-libs-1:1.23-1.el9.aarch64 50/210 Verifying : libeconf-0.4.1-4.el9.aarch64 51/210 Verifying : libgcrypt-1.10.0-11.el9.aarch64 52/210 Verifying : libnghttp2-1.43.0-6.el9.aarch64 53/210 Verifying : pcre-8.44-4.el9.aarch64 54/210 Verifying : pcre2-10.40-6.el9.aarch64 55/210 Verifying : pcre2-syntax-10.40-6.el9.noarch 56/210 Verifying : bzip2-1.0.8-10.el9_5.aarch64 57/210 Verifying : bzip2-libs-1.0.8-10.el9_5.aarch64 58/210 Verifying : p11-kit-0.25.3-3.el9_5.aarch64 59/210 Verifying : p11-kit-trust-0.25.3-3.el9_5.aarch64 60/210 Verifying : alternatives-1.24-2.el9.aarch64 61/210 Verifying : coreutils-8.32-39.el9.aarch64 62/210 Verifying : coreutils-common-8.32-39.el9.aarch64 63/210 Verifying : libselinux-3.6-3.el9.aarch64 64/210 Verifying : libsemanage-3.6-5.el9_6.aarch64 65/210 Verifying : libtasn1-4.16.0-9.el9.aarch64 66/210 Verifying : libtool-ltdl-2.4.6-46.el9.aarch64 67/210 Verifying : libzstd-1.5.5-1.el9.aarch64 68/210 Verifying : openldap-2.6.8-4.el9.aarch64 69/210 Verifying : zstd-1.5.5-1.el9.aarch64 70/210 Verifying : krb5-libs-1.21.1-8.el9_6.aarch64 71/210 Verifying : libarchive-3.5.3-6.el9_6.aarch64 72/210 Verifying : libdb-5.3.28-57.el9_6.aarch64 73/210 Verifying : which-2.21-30.el9_6.aarch64 74/210 Verifying : crypto-policies-20250905-1.git377cc42.el9_7.noar 75/210 Verifying : cyrus-sasl-lib-2.1.27-22.el9.aarch64 76/210 Verifying : elfutils-0.193-1.el9.aarch64 77/210 Verifying : elfutils-debuginfod-client-0.193-1.el9.aarch64 78/210 Verifying : elfutils-default-yama-scope-0.193-1.el9.noarch 79/210 Verifying : elfutils-libelf-0.193-1.el9.aarch64 80/210 Verifying : elfutils-libs-0.193-1.el9.aarch64 81/210 Verifying : libcap-2.48-10.el9.aarch64 82/210 Verifying : libcom_err-1.46.5-8.el9.aarch64 83/210 Verifying : libgcc-11.5.0-11.el9.aarch64 84/210 Verifying : libgomp-11.5.0-11.el9.aarch64 85/210 Verifying : libsepol-3.6-3.el9.aarch64 86/210 Verifying : libstdc++-11.5.0-11.el9.aarch64 87/210 Verifying : ncurses-base-6.2-12.20210508.el9.noarch 88/210 Verifying : ncurses-libs-6.2-12.20210508.el9.aarch64 89/210 Verifying : openssl-fips-provider-3.0.7-8.el9.aarch64 90/210 Verifying : openssl-fips-provider-so-3.0.7-8.el9.aarch64 91/210 Verifying : pam-1.5.1-26.el9_6.aarch64 92/210 Verifying : rpm-build-libs-4.16.1.3-39.el9.aarch64 93/210 Verifying : rpm-libs-4.16.1.3-39.el9.aarch64 94/210 Verifying : shadow-utils-2:4.9-15.el9.aarch64 95/210 Verifying : unzip-6.0-59.el9.aarch64 96/210 Verifying : audit-libs-3.1.5-7.el9.aarch64 97/210 Verifying : ncurses-6.2-12.20210508.el9.aarch64 98/210 Verifying : rpm-4.16.1.3-39.el9.aarch64 99/210 Verifying : glibc-2.34-231.el9_7.2.aarch64 100/210 Verifying : glibc-common-2.34-231.el9_7.2.aarch64 101/210 Verifying : glibc-gconv-extra-2.34-231.el9_7.2.aarch64 102/210 Verifying : glibc-minimal-langpack-2.34-231.el9_7.2.aarch64 103/210 Verifying : redhat-release-9.7-0.7.el9.aarch64 104/210 Verifying : sqlite-libs-3.34.1-9.el9_7.aarch64 105/210 Verifying : ca-certificates-2025.2.80_v9.0.305-91.el9.noarch 106/210 Verifying : libxml2-2.9.13-14.el9_7.aarch64 107/210 Verifying : systemd-libs-252-55.el9_7.7.aarch64 108/210 Verifying : tzdata-2025c-1.el9.noarch 109/210 Verifying : libssh-0.10.4-17.el9_7.aarch64 110/210 Verifying : libssh-config-0.10.4-17.el9_7.noarch 111/210 Verifying : binutils-2.35.2-67.el9_7.1.aarch64 112/210 Verifying : binutils-gold-2.35.2-67.el9_7.1.aarch64 113/210 Verifying : tar-2:1.34-9.el9_7.aarch64 114/210 Verifying : curl-7.76.1-35.el9_7.3.aarch64 115/210 Verifying : libcurl-7.76.1-35.el9_7.3.aarch64 116/210 Verifying : openssl-1:3.5.1-7.el9_7.aarch64 117/210 Verifying : openssl-libs-1:3.5.1-7.el9_7.aarch64 118/210 Verifying : libblkid-2.37.4-21.el9_7.aarch64 119/210 Verifying : libfdisk-2.37.4-21.el9_7.aarch64 120/210 Verifying : libmount-2.37.4-21.el9_7.aarch64 121/210 Verifying : libsmartcols-2.37.4-21.el9_7.aarch64 122/210 Verifying : libuuid-2.37.4-21.el9_7.aarch64 123/210 Verifying : util-linux-2.37.4-21.el9_7.aarch64 124/210 Verifying : util-linux-core-2.37.4-21.el9_7.aarch64 125/210 Verifying : libbrotli-1.0.9-9.el9_7.aarch64 126/210 Verifying : perl-Exporter-5.74-461.el9.noarch 127/210 Verifying : perl-File-Temp-1:0.231.100-4.el9.noarch 128/210 Verifying : perl-IO-Socket-IP-0.41-5.el9.noarch 129/210 Verifying : perl-Mozilla-CA-20200520-6.el9.noarch 130/210 Verifying : perl-Term-Cap-1.17-460.el9.noarch 131/210 Verifying : perl-Time-Local-2:1.300-7.el9.noarch 132/210 Verifying : perl-parent-1:0.238-460.el9.noarch 133/210 Verifying : perl-srpm-macros-1-41.el9.noarch 134/210 Verifying : rust-srpm-macros-17-4.el9.noarch 135/210 Verifying : ghc-srpm-macros-1.5.0-6.el9.noarch 136/210 Verifying : openblas-srpm-macros-2-11.el9.noarch 137/210 Verifying : patch-2.7.6-16.el9.aarch64 138/210 Verifying : perl-Digest-MD5-2.58-4.el9.aarch64 139/210 Verifying : perl-MIME-Base64-3.16-4.el9.aarch64 140/210 Verifying : perl-Pod-Simple-1:3.42-4.el9.noarch 141/210 Verifying : perl-Pod-Usage-4:2.01-4.el9.noarch 142/210 Verifying : perl-Term-ANSIColor-5.01-461.el9.noarch 143/210 Verifying : perl-Text-ParseWords-3.30-460.el9.noarch 144/210 Verifying : perl-URI-5.09-3.el9.noarch 145/210 Verifying : perl-constant-1.33-461.el9.noarch 146/210 Verifying : perl-File-Path-2.18-4.el9.noarch 147/210 Verifying : perl-PathTools-3.78-461.el9.aarch64 148/210 Verifying : perl-Pod-Escapes-1:1.07-460.el9.noarch 149/210 Verifying : perl-Pod-Perldoc-3.28.01-461.el9.noarch 150/210 Verifying : perl-libnet-3.13-4.el9.noarch 151/210 Verifying : perl-podlators-1:4.14-460.el9.noarch 152/210 Verifying : fonts-srpm-macros-1:2.0.5-7.el9.1.noarch 153/210 Verifying : lua-srpm-macros-1-6.el9.noarch 154/210 Verifying : ocaml-srpm-macros-6-6.el9.noarch 155/210 Verifying : perl-Carp-1.50-460.el9.noarch 156/210 Verifying : perl-Data-Dumper-2.174-462.el9.aarch64 157/210 Verifying : perl-Digest-1.19-4.el9.noarch 158/210 Verifying : perl-Encode-4:3.08-462.el9.aarch64 159/210 Verifying : perl-Getopt-Long-1:2.52-4.el9.noarch 160/210 Verifying : perl-Socket-4:2.031-4.el9.aarch64 161/210 Verifying : perl-Storable-1:3.21-460.el9.aarch64 162/210 Verifying : perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch 163/210 Verifying : qt5-srpm-macros-5.15.9-1.el9.noarch 164/210 Verifying : perl-HTTP-Tiny-0.076-462.el9.noarch 165/210 Verifying : perl-Scalar-List-Utils-4:1.56-462.el9.aarch64 166/210 Verifying : python-srpm-macros-3.9-54.el9.noarch 167/210 Verifying : perl-IO-Socket-SSL-2.073-2.el9.noarch 168/210 Verifying : pyproject-srpm-macros-1.16.2-1.el9.noarch 169/210 Verifying : perl-AutoLoader-5.74-481.1.el9_6.noarch 170/210 Verifying : perl-B-1.80-481.1.el9_6.aarch64 171/210 Verifying : perl-Class-Struct-0.66-481.1.el9_6.noarch 172/210 Verifying : perl-Errno-1.30-481.1.el9_6.aarch64 173/210 Verifying : perl-Fcntl-1.13-481.1.el9_6.aarch64 174/210 Verifying : perl-File-Basename-2.85-481.1.el9_6.noarch 175/210 Verifying : perl-File-stat-1.09-481.1.el9_6.noarch 176/210 Verifying : perl-FileHandle-2.03-481.1.el9_6.noarch 177/210 Verifying : perl-Getopt-Std-1.12-481.1.el9_6.noarch 178/210 Verifying : perl-IO-1.43-481.1.el9_6.aarch64 179/210 Verifying : perl-IPC-Open3-1.21-481.1.el9_6.noarch 180/210 Verifying : perl-POSIX-1.94-481.1.el9_6.aarch64 181/210 Verifying : perl-SelectSaver-1.02-481.1.el9_6.noarch 182/210 Verifying : perl-Symbol-1.08-481.1.el9_6.noarch 183/210 Verifying : perl-base-2.27-481.1.el9_6.noarch 184/210 Verifying : perl-if-0.60.800-481.1.el9_6.noarch 185/210 Verifying : perl-interpreter-4:5.32.1-481.1.el9_6.aarch64 186/210 Verifying : perl-libs-4:5.32.1-481.1.el9_6.aarch64 187/210 Verifying : perl-mro-1.23-481.1.el9_6.aarch64 188/210 Verifying : perl-overload-1.31-481.1.el9_6.noarch 189/210 Verifying : perl-overloading-0.02-481.1.el9_6.noarch 190/210 Verifying : perl-subs-1.03-481.1.el9_6.noarch 191/210 Verifying : perl-vars-1.05-481.1.el9_6.noarch 192/210 Verifying : debugedit-5.0-11.el9.aarch64 193/210 Verifying : efi-srpm-macros-6-4.el9.noarch 194/210 Verifying : perl-Net-SSLeay-1.94-3.el9.aarch64 195/210 Verifying : dwz-0.16-1.el9.aarch64 196/210 Verifying : gdb-minimal-16.3-2.el9.aarch64 197/210 Verifying : kernel-srpm-macros-1.0-14.el9.noarch 198/210 Verifying : redhat-rpm-config-210-1.el9.noarch 199/210 Verifying : rpm-build-4.16.1.3-39.el9.aarch64 200/210 Verifying : go-srpm-macros-3.6.0-12.el9_7.noarch 201/210 Verifying : ansible-srpm-macros-1-16.el9.noarch 202/210 Verifying : epel-rpm-macros-9-17.el9.noarch 203/210 Verifying : forge-srpm-macros-0.4.0-1.el9.noarch 204/210 Verifying : fpc-srpm-macros-1.3-7.el9.noarch 205/210 Verifying : ghc-srpm-macros-epel-1.9.1-1.el9.noarch 206/210 Verifying : go-srpm-macros-epel-3.8.0-1.el9.noarch 207/210 Verifying : qt6-srpm-macros-6.6.2-1.el9.noarch 208/210 Verifying : rpmautospec-rpm-macros-0.8.1-11.el9.noarch 209/210 Verifying : rust-srpm-macros-epel-26.3-1.el9.noarch 210/210 Installed products updated. Installed: alternatives-1.24-2.el9.aarch64 ansible-srpm-macros-1-16.el9.noarch audit-libs-3.1.5-7.el9.aarch64 basesystem-11-13.el9.noarch bash-5.1.8-9.el9.aarch64 binutils-2.35.2-67.el9_7.1.aarch64 binutils-gold-2.35.2-67.el9_7.1.aarch64 bzip2-1.0.8-10.el9_5.aarch64 bzip2-libs-1.0.8-10.el9_5.aarch64 ca-certificates-2025.2.80_v9.0.305-91.el9.noarch coreutils-8.32-39.el9.aarch64 coreutils-common-8.32-39.el9.aarch64 cpio-2.13-16.el9.aarch64 cracklib-2.9.6-27.el9.aarch64 cracklib-dicts-2.9.6-27.el9.aarch64 crypto-policies-20250905-1.git377cc42.el9_7.noarch curl-7.76.1-35.el9_7.3.aarch64 cyrus-sasl-lib-2.1.27-22.el9.aarch64 debugedit-5.0-11.el9.aarch64 diffutils-3.7-12.el9.aarch64 dwz-0.16-1.el9.aarch64 ed-1.14.2-12.el9.aarch64 efi-srpm-macros-6-4.el9.noarch elfutils-0.193-1.el9.aarch64 elfutils-debuginfod-client-0.193-1.el9.aarch64 elfutils-default-yama-scope-0.193-1.el9.noarch elfutils-libelf-0.193-1.el9.aarch64 elfutils-libs-0.193-1.el9.aarch64 epel-rpm-macros-9-17.el9.noarch file-5.39-16.el9.aarch64 file-libs-5.39-16.el9.aarch64 filesystem-3.16-5.el9.aarch64 findutils-1:4.8.0-7.el9.aarch64 fonts-srpm-macros-1:2.0.5-7.el9.1.noarch forge-srpm-macros-0.4.0-1.el9.noarch fpc-srpm-macros-1.3-7.el9.noarch gawk-5.1.0-6.el9.aarch64 gdb-minimal-16.3-2.el9.aarch64 gdbm-libs-1:1.23-1.el9.aarch64 ghc-srpm-macros-1.5.0-6.el9.noarch ghc-srpm-macros-epel-1.9.1-1.el9.noarch glibc-2.34-231.el9_7.2.aarch64 glibc-common-2.34-231.el9_7.2.aarch64 glibc-gconv-extra-2.34-231.el9_7.2.aarch64 glibc-minimal-langpack-2.34-231.el9_7.2.aarch64 gmp-1:6.2.0-13.el9.aarch64 go-srpm-macros-3.6.0-12.el9_7.noarch go-srpm-macros-epel-3.8.0-1.el9.noarch grep-3.6-5.el9.aarch64 groff-base-1.22.4-10.el9.aarch64 gzip-1.12-1.el9.aarch64 info-6.7-15.el9.aarch64 json-c-0.14-11.el9.aarch64 kernel-srpm-macros-1.0-14.el9.noarch keyutils-libs-1.6.3-1.el9.aarch64 krb5-libs-1.21.1-8.el9_6.aarch64 libacl-2.3.1-4.el9.aarch64 libarchive-3.5.3-6.el9_6.aarch64 libattr-2.5.1-3.el9.aarch64 libblkid-2.37.4-21.el9_7.aarch64 libbrotli-1.0.9-9.el9_7.aarch64 libcap-2.48-10.el9.aarch64 libcap-ng-0.8.2-7.el9.aarch64 libcom_err-1.46.5-8.el9.aarch64 libcurl-7.76.1-35.el9_7.3.aarch64 libdb-5.3.28-57.el9_6.aarch64 libeconf-0.4.1-4.el9.aarch64 libevent-2.1.12-8.el9_4.aarch64 libfdisk-2.37.4-21.el9_7.aarch64 libffi-3.4.2-8.el9.aarch64 libgcc-11.5.0-11.el9.aarch64 libgcrypt-1.10.0-11.el9.aarch64 libgomp-11.5.0-11.el9.aarch64 libgpg-error-1.42-5.el9.aarch64 libidn2-2.3.0-7.el9.aarch64 libmount-2.37.4-21.el9_7.aarch64 libnghttp2-1.43.0-6.el9.aarch64 libpkgconf-1.7.3-10.el9.aarch64 libpsl-0.21.1-5.el9.aarch64 libpwquality-1.4.4-8.el9.aarch64 libselinux-3.6-3.el9.aarch64 libsemanage-3.6-5.el9_6.aarch64 libsepol-3.6-3.el9.aarch64 libsigsegv-2.13-4.el9.aarch64 libsmartcols-2.37.4-21.el9_7.aarch64 libssh-0.10.4-17.el9_7.aarch64 libssh-config-0.10.4-17.el9_7.noarch libstdc++-11.5.0-11.el9.aarch64 libtasn1-4.16.0-9.el9.aarch64 libtool-ltdl-2.4.6-46.el9.aarch64 libunistring-0.9.10-15.el9.aarch64 libutempter-1.2.1-6.el9.aarch64 libuuid-2.37.4-21.el9_7.aarch64 libverto-0.3.2-3.el9.aarch64 libxcrypt-4.4.18-3.el9.aarch64 libxml2-2.9.13-14.el9_7.aarch64 libzstd-1.5.5-1.el9.aarch64 lua-libs-5.4.4-4.el9.aarch64 lua-srpm-macros-1-6.el9.noarch lz4-libs-1.9.3-5.el9.aarch64 mpfr-4.1.0-7.el9.aarch64 ncurses-6.2-12.20210508.el9.aarch64 ncurses-base-6.2-12.20210508.el9.noarch ncurses-libs-6.2-12.20210508.el9.aarch64 ocaml-srpm-macros-6-6.el9.noarch openblas-srpm-macros-2-11.el9.noarch openldap-2.6.8-4.el9.aarch64 openssl-1:3.5.1-7.el9_7.aarch64 openssl-fips-provider-3.0.7-8.el9.aarch64 openssl-fips-provider-so-3.0.7-8.el9.aarch64 openssl-libs-1:3.5.1-7.el9_7.aarch64 p11-kit-0.25.3-3.el9_5.aarch64 p11-kit-trust-0.25.3-3.el9_5.aarch64 pam-1.5.1-26.el9_6.aarch64 patch-2.7.6-16.el9.aarch64 pcre-8.44-4.el9.aarch64 pcre2-10.40-6.el9.aarch64 pcre2-syntax-10.40-6.el9.noarch perl-AutoLoader-5.74-481.1.el9_6.noarch perl-B-1.80-481.1.el9_6.aarch64 perl-Carp-1.50-460.el9.noarch perl-Class-Struct-0.66-481.1.el9_6.noarch perl-Data-Dumper-2.174-462.el9.aarch64 perl-Digest-1.19-4.el9.noarch perl-Digest-MD5-2.58-4.el9.aarch64 perl-Encode-4:3.08-462.el9.aarch64 perl-Errno-1.30-481.1.el9_6.aarch64 perl-Exporter-5.74-461.el9.noarch perl-Fcntl-1.13-481.1.el9_6.aarch64 perl-File-Basename-2.85-481.1.el9_6.noarch perl-File-Path-2.18-4.el9.noarch perl-File-Temp-1:0.231.100-4.el9.noarch perl-File-stat-1.09-481.1.el9_6.noarch perl-FileHandle-2.03-481.1.el9_6.noarch perl-Getopt-Long-1:2.52-4.el9.noarch perl-Getopt-Std-1.12-481.1.el9_6.noarch perl-HTTP-Tiny-0.076-462.el9.noarch perl-IO-1.43-481.1.el9_6.aarch64 perl-IO-Socket-IP-0.41-5.el9.noarch perl-IO-Socket-SSL-2.073-2.el9.noarch perl-IPC-Open3-1.21-481.1.el9_6.noarch perl-MIME-Base64-3.16-4.el9.aarch64 perl-Mozilla-CA-20200520-6.el9.noarch perl-Net-SSLeay-1.94-3.el9.aarch64 perl-POSIX-1.94-481.1.el9_6.aarch64 perl-PathTools-3.78-461.el9.aarch64 perl-Pod-Escapes-1:1.07-460.el9.noarch perl-Pod-Perldoc-3.28.01-461.el9.noarch perl-Pod-Simple-1:3.42-4.el9.noarch perl-Pod-Usage-4:2.01-4.el9.noarch perl-Scalar-List-Utils-4:1.56-462.el9.aarch64 perl-SelectSaver-1.02-481.1.el9_6.noarch perl-Socket-4:2.031-4.el9.aarch64 perl-Storable-1:3.21-460.el9.aarch64 perl-Symbol-1.08-481.1.el9_6.noarch perl-Term-ANSIColor-5.01-461.el9.noarch perl-Term-Cap-1.17-460.el9.noarch perl-Text-ParseWords-3.30-460.el9.noarch perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch perl-Time-Local-2:1.300-7.el9.noarch perl-URI-5.09-3.el9.noarch perl-base-2.27-481.1.el9_6.noarch perl-constant-1.33-461.el9.noarch perl-if-0.60.800-481.1.el9_6.noarch perl-interpreter-4:5.32.1-481.1.el9_6.aarch64 perl-libnet-3.13-4.el9.noarch perl-libs-4:5.32.1-481.1.el9_6.aarch64 perl-mro-1.23-481.1.el9_6.aarch64 perl-overload-1.31-481.1.el9_6.noarch perl-overloading-0.02-481.1.el9_6.noarch perl-parent-1:0.238-460.el9.noarch perl-podlators-1:4.14-460.el9.noarch perl-srpm-macros-1-41.el9.noarch perl-subs-1.03-481.1.el9_6.noarch perl-vars-1.05-481.1.el9_6.noarch pkgconf-1.7.3-10.el9.aarch64 pkgconf-m4-1.7.3-10.el9.noarch pkgconf-pkg-config-1.7.3-10.el9.aarch64 popt-1.18-8.el9.aarch64 publicsuffix-list-dafsa-20210518-3.el9.noarch pyproject-srpm-macros-1.16.2-1.el9.noarch python-srpm-macros-3.9-54.el9.noarch qt5-srpm-macros-5.15.9-1.el9.noarch qt6-srpm-macros-6.6.2-1.el9.noarch readline-8.1-4.el9.aarch64 redhat-release-9.7-0.7.el9.aarch64 redhat-rpm-config-210-1.el9.noarch rpm-4.16.1.3-39.el9.aarch64 rpm-build-4.16.1.3-39.el9.aarch64 rpm-build-libs-4.16.1.3-39.el9.aarch64 rpm-libs-4.16.1.3-39.el9.aarch64 rpmautospec-rpm-macros-0.8.1-11.el9.noarch rust-srpm-macros-17-4.el9.noarch rust-srpm-macros-epel-26.3-1.el9.noarch sed-4.8-9.el9.aarch64 setup-2.13.7-10.el9.noarch shadow-utils-2:4.9-15.el9.aarch64 sqlite-libs-3.34.1-9.el9_7.aarch64 systemd-libs-252-55.el9_7.7.aarch64 tar-2:1.34-9.el9_7.aarch64 tzdata-2025c-1.el9.noarch unzip-6.0-59.el9.aarch64 util-linux-2.37.4-21.el9_7.aarch64 util-linux-core-2.37.4-21.el9_7.aarch64 which-2.21-30.el9_6.aarch64 xz-5.2.5-8.el9_0.aarch64 xz-libs-5.2.5-8.el9_0.aarch64 zip-3.0-35.el9.aarch64 zlib-1.2.11-40.el9.aarch64 zstd-1.5.5-1.el9.aarch64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.24-2.el9.aarch64 ansible-srpm-macros-1-16.el9.noarch audit-libs-3.1.5-7.el9.aarch64 basesystem-11-13.el9.noarch bash-5.1.8-9.el9.aarch64 binutils-2.35.2-67.el9_7.1.aarch64 binutils-gold-2.35.2-67.el9_7.1.aarch64 bzip2-1.0.8-10.el9_5.aarch64 bzip2-libs-1.0.8-10.el9_5.aarch64 ca-certificates-2025.2.80_v9.0.305-91.el9.noarch coreutils-8.32-39.el9.aarch64 coreutils-common-8.32-39.el9.aarch64 cpio-2.13-16.el9.aarch64 cracklib-2.9.6-27.el9.aarch64 cracklib-dicts-2.9.6-27.el9.aarch64 crypto-policies-20250905-1.git377cc42.el9_7.noarch curl-7.76.1-35.el9_7.3.aarch64 cyrus-sasl-lib-2.1.27-22.el9.aarch64 debugedit-5.0-11.el9.aarch64 diffutils-3.7-12.el9.aarch64 dwz-0.16-1.el9.aarch64 ed-1.14.2-12.el9.aarch64 efi-srpm-macros-6-4.el9.noarch elfutils-0.193-1.el9.aarch64 elfutils-debuginfod-client-0.193-1.el9.aarch64 elfutils-default-yama-scope-0.193-1.el9.noarch elfutils-libelf-0.193-1.el9.aarch64 elfutils-libs-0.193-1.el9.aarch64 epel-rpm-macros-9-17.el9.noarch file-5.39-16.el9.aarch64 file-libs-5.39-16.el9.aarch64 filesystem-3.16-5.el9.aarch64 findutils-4.8.0-7.el9.aarch64 fonts-srpm-macros-2.0.5-7.el9.1.noarch forge-srpm-macros-0.4.0-1.el9.noarch fpc-srpm-macros-1.3-7.el9.noarch gawk-5.1.0-6.el9.aarch64 gdb-minimal-16.3-2.el9.aarch64 gdbm-libs-1.23-1.el9.aarch64 ghc-srpm-macros-1.5.0-6.el9.noarch ghc-srpm-macros-epel-1.9.1-1.el9.noarch glibc-2.34-231.el9_7.2.aarch64 glibc-common-2.34-231.el9_7.2.aarch64 glibc-gconv-extra-2.34-231.el9_7.2.aarch64 glibc-minimal-langpack-2.34-231.el9_7.2.aarch64 gmp-6.2.0-13.el9.aarch64 go-srpm-macros-3.6.0-12.el9_7.noarch go-srpm-macros-epel-3.8.0-1.el9.noarch gpg-pubkey-3228467c-613798eb gpg-pubkey-5a6340b3-6229229e gpg-pubkey-fd431d51-4ae0493b grep-3.6-5.el9.aarch64 groff-base-1.22.4-10.el9.aarch64 gzip-1.12-1.el9.aarch64 info-6.7-15.el9.aarch64 json-c-0.14-11.el9.aarch64 kernel-srpm-macros-1.0-14.el9.noarch keyutils-libs-1.6.3-1.el9.aarch64 krb5-libs-1.21.1-8.el9_6.aarch64 libacl-2.3.1-4.el9.aarch64 libarchive-3.5.3-6.el9_6.aarch64 libattr-2.5.1-3.el9.aarch64 libblkid-2.37.4-21.el9_7.aarch64 libbrotli-1.0.9-9.el9_7.aarch64 libcap-2.48-10.el9.aarch64 libcap-ng-0.8.2-7.el9.aarch64 libcom_err-1.46.5-8.el9.aarch64 libcurl-7.76.1-35.el9_7.3.aarch64 libdb-5.3.28-57.el9_6.aarch64 libeconf-0.4.1-4.el9.aarch64 libevent-2.1.12-8.el9_4.aarch64 libfdisk-2.37.4-21.el9_7.aarch64 libffi-3.4.2-8.el9.aarch64 libgcc-11.5.0-11.el9.aarch64 libgcrypt-1.10.0-11.el9.aarch64 libgomp-11.5.0-11.el9.aarch64 libgpg-error-1.42-5.el9.aarch64 libidn2-2.3.0-7.el9.aarch64 libmount-2.37.4-21.el9_7.aarch64 libnghttp2-1.43.0-6.el9.aarch64 libpkgconf-1.7.3-10.el9.aarch64 libpsl-0.21.1-5.el9.aarch64 libpwquality-1.4.4-8.el9.aarch64 libselinux-3.6-3.el9.aarch64 libsemanage-3.6-5.el9_6.aarch64 libsepol-3.6-3.el9.aarch64 libsigsegv-2.13-4.el9.aarch64 libsmartcols-2.37.4-21.el9_7.aarch64 libssh-0.10.4-17.el9_7.aarch64 libssh-config-0.10.4-17.el9_7.noarch libstdc++-11.5.0-11.el9.aarch64 libtasn1-4.16.0-9.el9.aarch64 libtool-ltdl-2.4.6-46.el9.aarch64 libunistring-0.9.10-15.el9.aarch64 libutempter-1.2.1-6.el9.aarch64 libuuid-2.37.4-21.el9_7.aarch64 libverto-0.3.2-3.el9.aarch64 libxcrypt-4.4.18-3.el9.aarch64 libxml2-2.9.13-14.el9_7.aarch64 libzstd-1.5.5-1.el9.aarch64 lua-libs-5.4.4-4.el9.aarch64 lua-srpm-macros-1-6.el9.noarch lz4-libs-1.9.3-5.el9.aarch64 mpfr-4.1.0-7.el9.aarch64 ncurses-6.2-12.20210508.el9.aarch64 ncurses-base-6.2-12.20210508.el9.noarch ncurses-libs-6.2-12.20210508.el9.aarch64 ocaml-srpm-macros-6-6.el9.noarch openblas-srpm-macros-2-11.el9.noarch openldap-2.6.8-4.el9.aarch64 openssl-3.5.1-7.el9_7.aarch64 openssl-fips-provider-3.0.7-8.el9.aarch64 openssl-fips-provider-so-3.0.7-8.el9.aarch64 openssl-libs-3.5.1-7.el9_7.aarch64 p11-kit-0.25.3-3.el9_5.aarch64 p11-kit-trust-0.25.3-3.el9_5.aarch64 pam-1.5.1-26.el9_6.aarch64 patch-2.7.6-16.el9.aarch64 pcre-8.44-4.el9.aarch64 pcre2-10.40-6.el9.aarch64 pcre2-syntax-10.40-6.el9.noarch perl-AutoLoader-5.74-481.1.el9_6.noarch perl-B-1.80-481.1.el9_6.aarch64 perl-Carp-1.50-460.el9.noarch perl-Class-Struct-0.66-481.1.el9_6.noarch perl-Data-Dumper-2.174-462.el9.aarch64 perl-Digest-1.19-4.el9.noarch perl-Digest-MD5-2.58-4.el9.aarch64 perl-Encode-3.08-462.el9.aarch64 perl-Errno-1.30-481.1.el9_6.aarch64 perl-Exporter-5.74-461.el9.noarch perl-Fcntl-1.13-481.1.el9_6.aarch64 perl-File-Basename-2.85-481.1.el9_6.noarch perl-File-Path-2.18-4.el9.noarch perl-File-Temp-0.231.100-4.el9.noarch perl-File-stat-1.09-481.1.el9_6.noarch perl-FileHandle-2.03-481.1.el9_6.noarch perl-Getopt-Long-2.52-4.el9.noarch perl-Getopt-Std-1.12-481.1.el9_6.noarch perl-HTTP-Tiny-0.076-462.el9.noarch perl-IO-1.43-481.1.el9_6.aarch64 perl-IO-Socket-IP-0.41-5.el9.noarch perl-IO-Socket-SSL-2.073-2.el9.noarch perl-IPC-Open3-1.21-481.1.el9_6.noarch perl-MIME-Base64-3.16-4.el9.aarch64 perl-Mozilla-CA-20200520-6.el9.noarch perl-Net-SSLeay-1.94-3.el9.aarch64 perl-POSIX-1.94-481.1.el9_6.aarch64 perl-PathTools-3.78-461.el9.aarch64 perl-Pod-Escapes-1.07-460.el9.noarch perl-Pod-Perldoc-3.28.01-461.el9.noarch perl-Pod-Simple-3.42-4.el9.noarch perl-Pod-Usage-2.01-4.el9.noarch perl-Scalar-List-Utils-1.56-462.el9.aarch64 perl-SelectSaver-1.02-481.1.el9_6.noarch perl-Socket-2.031-4.el9.aarch64 perl-Storable-3.21-460.el9.aarch64 perl-Symbol-1.08-481.1.el9_6.noarch perl-Term-ANSIColor-5.01-461.el9.noarch perl-Term-Cap-1.17-460.el9.noarch perl-Text-ParseWords-3.30-460.el9.noarch perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch perl-Time-Local-1.300-7.el9.noarch perl-URI-5.09-3.el9.noarch perl-base-2.27-481.1.el9_6.noarch perl-constant-1.33-461.el9.noarch perl-if-0.60.800-481.1.el9_6.noarch perl-interpreter-5.32.1-481.1.el9_6.aarch64 perl-libnet-3.13-4.el9.noarch perl-libs-5.32.1-481.1.el9_6.aarch64 perl-mro-1.23-481.1.el9_6.aarch64 perl-overload-1.31-481.1.el9_6.noarch perl-overloading-0.02-481.1.el9_6.noarch perl-parent-0.238-460.el9.noarch perl-podlators-4.14-460.el9.noarch perl-srpm-macros-1-41.el9.noarch perl-subs-1.03-481.1.el9_6.noarch perl-vars-1.05-481.1.el9_6.noarch pkgconf-1.7.3-10.el9.aarch64 pkgconf-m4-1.7.3-10.el9.noarch pkgconf-pkg-config-1.7.3-10.el9.aarch64 popt-1.18-8.el9.aarch64 publicsuffix-list-dafsa-20210518-3.el9.noarch pyproject-srpm-macros-1.16.2-1.el9.noarch python-srpm-macros-3.9-54.el9.noarch qt5-srpm-macros-5.15.9-1.el9.noarch qt6-srpm-macros-6.6.2-1.el9.noarch readline-8.1-4.el9.aarch64 redhat-release-9.7-0.7.el9.aarch64 redhat-rpm-config-210-1.el9.noarch rpm-4.16.1.3-39.el9.aarch64 rpm-build-4.16.1.3-39.el9.aarch64 rpm-build-libs-4.16.1.3-39.el9.aarch64 rpm-libs-4.16.1.3-39.el9.aarch64 rpmautospec-rpm-macros-0.8.1-11.el9.noarch rust-srpm-macros-17-4.el9.noarch rust-srpm-macros-epel-26.3-1.el9.noarch sed-4.8-9.el9.aarch64 setup-2.13.7-10.el9.noarch shadow-utils-4.9-15.el9.aarch64 sqlite-libs-3.34.1-9.el9_7.aarch64 systemd-libs-252-55.el9_7.7.aarch64 tar-1.34-9.el9_7.aarch64 tzdata-2025c-1.el9.noarch unzip-6.0-59.el9.aarch64 util-linux-2.37.4-21.el9_7.aarch64 util-linux-core-2.37.4-21.el9_7.aarch64 which-2.21-30.el9_6.aarch64 xz-5.2.5-8.el9_0.aarch64 xz-libs-5.2.5-8.el9_0.aarch64 zip-3.0-35.el9.aarch64 zlib-1.2.11-40.el9.aarch64 zstd-1.5.5-1.el9.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1767484800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-1.el9.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/rhel+epel-9-aarch64-1770434856.060397/root/var/log/dnf.rpm.log /var/lib/mock/rhel+epel-9-aarch64-1770434856.060397/root/var/log/dnf.librepo.log /var/lib/mock/rhel+epel-9-aarch64-1770434856.060397/root/var/log/dnf.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ce5gewqr/mrtrix3/mrtrix3.spec) Config(child) 1 minutes 16 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-1.el9.src.rpm) Config(rhel+epel-9-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-aarch64-bootstrap-1770434856.060397/root. INFO: reusing tmpfs at /var/lib/mock/rhel+epel-9-aarch64-bootstrap-1770434856.060397/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-aarch64-1770434856.060397/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.16.1.3-39.el9.aarch64 python3-dnf-4.14.0-31.el9.noarch python3-dnf-plugins-core-4.3.0-24.el9_7.noarch yum-4.14.0-31.el9.noarch Finish: chroot init Start: build phase for mrtrix3-3.0.8-1.el9.src.rpm Start: build setup for mrtrix3-3.0.8-1.el9.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1767484800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-1.el9.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 59 kB/s | 1.5 kB 00:00 Red Hat Enterprise Linux - BaseOS 27 kB/s | 4.1 kB 00:00 Red Hat Enterprise Linux - AppStream 26 kB/s | 4.5 kB 00:00 Red Hat Enterprise Linux - CodeReady Linux Buil 30 kB/s | 4.5 kB 00:00 Extra Packages for Enterprise Linux 9 - aarch64 119 kB/s | 6.7 kB 00:00 Dependencies resolved. ============================================================================================= Package Arch Version Repository Size ============================================================================================= Installing: eigen3-devel noarch 3.4.0-2.el9 codeready-builder 1.2 M fftw-devel aarch64 3.3.8-12.el9 appstream 136 k gcc-c++ aarch64 11.5.0-11.el9 appstream 12 M git aarch64 2.47.3-1.el9_6 appstream 51 k libpng-devel aarch64 2:1.6.37-12.el9_7.1 appstream 292 k libtiff-devel aarch64 4.4.0-15.el9_7.2 appstream 570 k mesa-libGL-devel aarch64 25.0.7-3.el9_7 appstream 28 k mesa-libGLU-devel aarch64 9.0.1-6.el9 appstream 15 k python3 aarch64 3.9.25-3.el9_7 baseos 32 k python3-devel aarch64 3.9.25-3.el9_7 appstream 251 k qt5-qtbase-devel aarch64 5.15.9-11.el9_6 appstream 3.6 M qt5-qtsvg-devel aarch64 5.15.9-2.el9 appstream 34 k zlib-devel aarch64 1.2.11-40.el9 appstream 47 k Installing dependencies: annobin aarch64 12.98-1.el9 appstream 1.1 M avahi-libs aarch64 0.8-23.el9 baseos 66 k cmake aarch64 3.26.5-3.el9_7 appstream 7.0 M cmake-data noarch 3.26.5-3.el9_7 appstream 2.4 M cmake-filesystem aarch64 3.26.5-3.el9_7 appstream 18 k cmake-rpm-macros noarch 3.26.5-3.el9_7 appstream 9.7 k cpp aarch64 11.5.0-11.el9 appstream 10 M cups-libs aarch64 1:2.3.3op2-34.el9_7.2 baseos 258 k dbus-libs aarch64 1:1.12.20-8.el9 baseos 151 k dejavu-sans-fonts noarch 2.37-18.el9 baseos 1.3 M emacs-filesystem noarch 1:27.2-18.el9 appstream 9.3 k expat aarch64 2.5.0-5.el9_7.1 baseos 112 k fftw aarch64 3.3.8-12.el9 appstream 44 k fftw-libs aarch64 3.3.8-12.el9 appstream 8.3 k fftw-libs-double aarch64 3.3.8-12.el9 appstream 610 k fftw-libs-long aarch64 3.3.8-12.el9 appstream 945 k fftw-libs-single aarch64 3.3.8-12.el9 appstream 610 k fontconfig aarch64 2.14.0-2.el9_1 appstream 303 k fonts-filesystem noarch 1:2.0.5-7.el9.1 baseos 11 k freetype aarch64 2.10.4-10.el9_5 baseos 383 k gcc aarch64 11.5.0-11.el9 appstream 30 M gcc-plugin-annobin aarch64 11.5.0-11.el9 appstream 36 k git-core aarch64 2.47.3-1.el9_6 appstream 4.8 M git-core-doc noarch 2.47.3-1.el9_6 appstream 3.0 M gl-manpages noarch 1.1-24.20190306.el9 appstream 1.2 M glib2 aarch64 2.68.4-18.el9_7.1 baseos 2.6 M glibc-devel aarch64 2.34-231.el9_7.2 appstream 555 k glx-utils aarch64 8.4.0-12.20210504git0f9e7d9.el9 appstream 43 k gnutls aarch64 3.8.3-9.el9 baseos 1.0 M graphite2 aarch64 1.3.14-9.el9 baseos 95 k harfbuzz aarch64 2.7.4-10.el9 baseos 629 k jbigkit-libs aarch64 2.1-23.el9 appstream 56 k kernel-headers aarch64 5.14.0-611.27.1.el9_7 appstream 2.8 M langpacks-core-font-en noarch 3.0-16.el9 appstream 11 k less aarch64 590-6.el9 baseos 161 k libICE aarch64 1.0.10-8.el9 appstream 72 k libSM aarch64 1.2.3-10.el9 appstream 43 k libX11 aarch64 1.7.0-11.el9 appstream 638 k libX11-common noarch 1.7.0-11.el9 appstream 209 k libX11-devel aarch64 1.7.0-11.el9 appstream 1.1 M libX11-xcb aarch64 1.7.0-11.el9 appstream 12 k libXau aarch64 1.0.9-8.el9 appstream 34 k libXau-devel aarch64 1.0.9-8.el9 appstream 17 k libXext aarch64 1.3.4-8.el9 appstream 41 k libXxf86vm aarch64 1.1.4-18.el9 appstream 20 k libasan aarch64 11.5.0-11.el9 appstream 399 k libatomic aarch64 11.5.0-11.el9 baseos 25 k libcbor aarch64 0.7.0-5.el9 baseos 58 k libdrm aarch64 2.4.123-2.el9 appstream 138 k libdrm-devel aarch64 2.4.123-2.el9 appstream 192 k libedit aarch64 3.1-38.20210216cvs.el9 baseos 105 k libevdev aarch64 1.11.0-3.el9 appstream 46 k libfido2 aarch64 1.13.0-2.el9 baseos 98 k libglvnd aarch64 1:1.3.4-1.el9 appstream 134 k libglvnd-core-devel aarch64 1:1.3.4-1.el9 appstream 19 k libglvnd-devel aarch64 1:1.3.4-1.el9 appstream 165 k libglvnd-egl aarch64 1:1.3.4-1.el9 appstream 39 k libglvnd-gles aarch64 1:1.3.4-1.el9 appstream 35 k libglvnd-glx aarch64 1:1.3.4-1.el9 appstream 138 k libglvnd-opengl aarch64 1:1.3.4-1.el9 appstream 45 k libgudev aarch64 237-1.el9 baseos 37 k libicu aarch64 67.1-10.el9_6 baseos 9.5 M libinput aarch64 1.19.3-7.el9_6 appstream 200 k libjpeg-turbo aarch64 2.0.90-7.el9 appstream 172 k libmpc aarch64 1.2.1-4.el9 appstream 66 k libpng aarch64 2:1.6.37-12.el9_7.1 baseos 113 k libproxy aarch64 0.4.15-35.el9 baseos 74 k libstdc++-devel aarch64 11.5.0-11.el9 appstream 2.4 M libtiff aarch64 4.4.0-15.el9_7.2 appstream 191 k libubsan aarch64 11.5.0-11.el9 appstream 175 k libuv aarch64 1:1.42.0-2.el9_4 appstream 147 k libwacom aarch64 1.12.1-6.el9_7 appstream 44 k libwacom-data noarch 1.12.1-6.el9_7 appstream 207 k libwayland-client aarch64 1.21.0-1.el9 appstream 34 k libwayland-server aarch64 1.21.0-1.el9 appstream 42 k libwebp aarch64 1.2.0-8.el9_3 appstream 266 k libxcb aarch64 1.13.1-9.el9 appstream 247 k libxcb-devel aarch64 1.13.1-9.el9 appstream 1.5 M libxcrypt-devel aarch64 4.4.18-3.el9 appstream 32 k libxkbcommon aarch64 1.0.3-4.el9 appstream 134 k libxkbcommon-x11 aarch64 1.0.3-4.el9 appstream 22 k libxshmfence aarch64 1.3-10.el9 appstream 14 k llvm-filesystem aarch64 20.1.8-3.el9 appstream 9.1 k llvm-libs aarch64 20.1.8-3.el9 appstream 28 M make aarch64 1:4.3-8.el9 baseos 537 k mesa-dri-drivers aarch64 25.0.7-3.el9_7 appstream 8.2 M mesa-filesystem aarch64 25.0.7-3.el9_7 appstream 11 k mesa-libEGL aarch64 25.0.7-3.el9_7 appstream 132 k mesa-libEGL-devel aarch64 25.0.7-3.el9_7 appstream 14 k mesa-libGL aarch64 25.0.7-3.el9_7 appstream 162 k mesa-libGLU aarch64 9.0.1-6.el9 appstream 136 k mesa-libgbm aarch64 25.0.7-3.el9_7 appstream 17 k mtdev aarch64 1.1.5-22.el9 appstream 23 k nettle aarch64 3.10.1-1.el9 baseos 536 k openssh aarch64 8.7p1-47.el9_7 baseos 446 k openssh-clients aarch64 8.7p1-47.el9_7 baseos 681 k pcre2-utf16 aarch64 10.40-6.el9 appstream 197 k perl-DynaLoader aarch64 1.47-481.1.el9_6 appstream 25 k perl-English noarch 1.11-481.1.el9_6 appstream 13 k perl-Error noarch 1:0.17029-7.el9 appstream 46 k perl-File-Find noarch 1.37-481.1.el9_6 appstream 25 k perl-Git noarch 2.47.3-1.el9_6 appstream 38 k perl-TermReadKey aarch64 2.38-11.el9 appstream 40 k perl-lib aarch64 0.65-481.1.el9_6 appstream 14 k pyproject-rpm-macros noarch 1.16.2-1.el9 codeready-builder 46 k python-rpm-macros noarch 3.9-54.el9 appstream 16 k python3-libs aarch64 3.9.25-3.el9_7 baseos 8.1 M python3-packaging noarch 20.9-5.el9 appstream 81 k python3-pip-wheel noarch 21.3.1-1.el9 baseos 1.1 M python3-pyparsing noarch 2.4.7-9.el9 baseos 154 k python3-rpm-generators noarch 12-9.el9 appstream 29 k python3-rpm-macros noarch 3.9-54.el9 appstream 10 k python3-setuptools noarch 53.0.0-15.el9 baseos 936 k python3-setuptools-wheel noarch 53.0.0-15.el9 baseos 468 k qt5-qtbase aarch64 5.15.9-11.el9_6 appstream 3.5 M qt5-qtbase-common noarch 5.15.9-11.el9_6 appstream 8.6 k qt5-qtbase-gui aarch64 5.15.9-11.el9_6 appstream 6.2 M qt5-qtsvg aarch64 5.15.9-2.el9 appstream 189 k qt5-rpm-macros noarch 5.15.9-1.el9 appstream 11 k spirv-tools-libs aarch64 2025.2-1.el9 appstream 1.4 M valgrind-devel aarch64 1:3.25.1-3.el9 appstream 48 k vim-filesystem noarch 2:8.2.2637-23.el9_7 baseos 13 k vulkan-headers noarch 1.4.313.0-1.el9 appstream 1.4 M vulkan-loader aarch64 1.4.313.0-1.el9 appstream 165 k vulkan-loader-devel aarch64 1.4.313.0-1.el9 appstream 13 k xcb-util aarch64 0.4.0-19.el9 appstream 21 k xcb-util-image aarch64 0.4.0-19.el9 appstream 21 k xcb-util-keysyms aarch64 0.4.0-17.el9 appstream 16 k xcb-util-renderutil aarch64 0.3.9-20.el9 appstream 20 k xcb-util-wm aarch64 0.4.1-22.el9 appstream 34 k xkeyboard-config noarch 2.33-2.el9 appstream 866 k xml-common noarch 0.6.3-58.el9 appstream 36 k xorg-x11-proto-devel noarch 2024.1-1.el9 appstream 314 k Transaction Summary ============================================================================================= Install 146 Packages Total download size: 175 M Installed size: 624 M Downloading Packages: (1/146): fonts-filesystem-2.0.5-7.el9.1.noarch. 63 kB/s | 11 kB 00:00 (2/146): graphite2-1.3.14-9.el9.aarch64.rpm 460 kB/s | 95 kB 00:00 (3/146): dejavu-sans-fonts-2.37-18.el9.noarch.r 4.5 MB/s | 1.3 MB 00:00 (4/146): libcbor-0.7.0-5.el9.aarch64.rpm 505 kB/s | 58 kB 00:00 (5/146): libgudev-237-1.el9.aarch64.rpm 395 kB/s | 37 kB 00:00 (6/146): libproxy-0.4.15-35.el9.aarch64.rpm 754 kB/s | 74 kB 00:00 (7/146): libedit-3.1-38.20210216cvs.el9.aarch64 1.0 MB/s | 105 kB 00:00 (8/146): python3-pyparsing-2.4.7-9.el9.noarch.r 1.2 MB/s | 154 kB 00:00 (9/146): dbus-libs-1.12.20-8.el9.aarch64.rpm 1.5 MB/s | 151 kB 00:00 (10/146): harfbuzz-2.7.4-10.el9.aarch64.rpm 4.2 MB/s | 629 kB 00:00 (11/146): libfido2-1.13.0-2.el9.aarch64.rpm 1.0 MB/s | 98 kB 00:00 (12/146): make-4.3-8.el9.aarch64.rpm 3.2 MB/s | 537 kB 00:00 (13/146): freetype-2.10.4-10.el9_5.aarch64.rpm 3.6 MB/s | 383 kB 00:00 (14/146): python3-pip-wheel-21.3.1-1.el9.noarch 7.5 MB/s | 1.1 MB 00:00 (15/146): nettle-3.10.1-1.el9.aarch64.rpm 4.4 MB/s | 536 kB 00:00 (16/146): avahi-libs-0.8-23.el9.aarch64.rpm 669 kB/s | 66 kB 00:00 (17/146): gnutls-3.8.3-9.el9.aarch64.rpm 8.4 MB/s | 1.0 MB 00:00 (18/146): libicu-67.1-10.el9_6.aarch64.rpm 52 MB/s | 9.5 MB 00:00 (19/146): libatomic-11.5.0-11.el9.aarch64.rpm 237 kB/s | 25 kB 00:00 (20/146): python3-setuptools-53.0.0-15.el9.noar 9.3 MB/s | 936 kB 00:00 (21/146): python3-setuptools-wheel-53.0.0-15.el 4.4 MB/s | 468 kB 00:00 (22/146): less-590-6.el9.aarch64.rpm 1.7 MB/s | 161 kB 00:00 (23/146): vim-filesystem-8.2.2637-23.el9_7.noar 140 kB/s | 13 kB 00:00 (24/146): expat-2.5.0-5.el9_7.1.aarch64.rpm 1.0 MB/s | 112 kB 00:00 (25/146): openssh-8.7p1-47.el9_7.aarch64.rpm 4.2 MB/s | 446 kB 00:00 (26/146): openssh-clients-8.7p1-47.el9_7.aarch6 6.0 MB/s | 681 kB 00:00 (27/146): libpng-1.6.37-12.el9_7.1.aarch64.rpm 1.2 MB/s | 113 kB 00:00 (28/146): cups-libs-2.3.3op2-34.el9_7.2.aarch64 2.5 MB/s | 258 kB 00:00 (29/146): glib2-2.68.4-18.el9_7.1.aarch64.rpm 19 MB/s | 2.6 MB 00:00 (30/146): python3-3.9.25-3.el9_7.aarch64.rpm 314 kB/s | 32 kB 00:00 (31/146): fftw-devel-3.3.8-12.el9.aarch64.rpm 1.3 MB/s | 136 kB 00:00 (32/146): python3-libs-3.9.25-3.el9_7.aarch64.r 47 MB/s | 8.1 MB 00:00 (33/146): glx-utils-8.4.0-12.20210504git0f9e7d9 431 kB/s | 43 kB 00:00 (34/146): libXau-devel-1.0.9-8.el9.aarch64.rpm 189 kB/s | 17 kB 00:00 (35/146): libxkbcommon-1.0.3-4.el9.aarch64.rpm 1.4 MB/s | 134 kB 00:00 (36/146): libglvnd-egl-1.3.4-1.el9.aarch64.rpm 325 kB/s | 39 kB 00:00 (37/146): libxshmfence-1.3-10.el9.aarch64.rpm 131 kB/s | 14 kB 00:00 (38/146): mtdev-1.1.5-22.el9.aarch64.rpm 238 kB/s | 23 kB 00:00 (39/146): perl-Error-0.17029-7.el9.noarch.rpm 494 kB/s | 46 kB 00:00 (40/146): xkeyboard-config-2.33-2.el9.noarch.rp 8.7 MB/s | 866 kB 00:00 (41/146): fftw-libs-double-3.3.8-12.el9.aarch64 6.3 MB/s | 610 kB 00:00 (42/146): libXext-1.3.4-8.el9.aarch64.rpm 417 kB/s | 41 kB 00:00 (43/146): libglvnd-1.3.4-1.el9.aarch64.rpm 1.4 MB/s | 134 kB 00:00 (44/146): libevdev-1.11.0-3.el9.aarch64.rpm 457 kB/s | 46 kB 00:00 (45/146): libglvnd-devel-1.3.4-1.el9.aarch64.rp 1.7 MB/s | 165 kB 00:00 (46/146): libglvnd-gles-1.3.4-1.el9.aarch64.rpm 385 kB/s | 35 kB 00:00 (47/146): libmpc-1.2.1-4.el9.aarch64.rpm 724 kB/s | 66 kB 00:00 (48/146): mesa-libGLU-devel-9.0.1-6.el9.aarch64 153 kB/s | 15 kB 00:00 (49/146): xcb-util-image-0.4.0-19.el9.aarch64.r 230 kB/s | 21 kB 00:00 (50/146): python3-packaging-20.9-5.el9.noarch.r 791 kB/s | 81 kB 00:00 (51/146): xcb-util-keysyms-0.4.0-17.el9.aarch64 133 kB/s | 16 kB 00:00 (52/146): xml-common-0.6.3-58.el9.noarch.rpm 382 kB/s | 36 kB 00:00 (53/146): fftw-3.3.8-12.el9.aarch64.rpm 461 kB/s | 44 kB 00:00 (54/146): fftw-libs-single-3.3.8-12.el9.aarch64 6.3 MB/s | 610 kB 00:00 (55/146): gl-manpages-1.1-24.20190306.el9.noarc 13 MB/s | 1.2 MB 00:00 (56/146): langpacks-core-font-en-3.0-16.el9.noa 115 kB/s | 11 kB 00:00 (57/146): libSM-1.2.3-10.el9.aarch64.rpm 476 kB/s | 43 kB 00:00 (58/146): libXau-1.0.9-8.el9.aarch64.rpm 371 kB/s | 34 kB 00:00 (59/146): libglvnd-core-devel-1.3.4-1.el9.aarch 207 kB/s | 19 kB 00:00 (60/146): libglvnd-opengl-1.3.4-1.el9.aarch64.r 484 kB/s | 45 kB 00:00 (61/146): libxkbcommon-x11-1.0.3-4.el9.aarch64. 247 kB/s | 22 kB 00:00 (62/146): perl-TermReadKey-2.38-11.el9.aarch64. 415 kB/s | 40 kB 00:00 (63/146): xcb-util-renderutil-0.3.9-20.el9.aarc 213 kB/s | 20 kB 00:00 (64/146): fftw-libs-3.3.8-12.el9.aarch64.rpm 91 kB/s | 8.3 kB 00:00 (65/146): fftw-libs-long-3.3.8-12.el9.aarch64.r 9.6 MB/s | 945 kB 00:00 (66/146): jbigkit-libs-2.1-23.el9.aarch64.rpm 606 kB/s | 56 kB 00:00 (67/146): libICE-1.0.10-8.el9.aarch64.rpm 789 kB/s | 72 kB 00:00 (68/146): libXxf86vm-1.1.4-18.el9.aarch64.rpm 181 kB/s | 20 kB 00:00 (69/146): libglvnd-glx-1.3.4-1.el9.aarch64.rpm 1.4 MB/s | 138 kB 00:00 (70/146): libxcb-1.13.1-9.el9.aarch64.rpm 2.5 MB/s | 247 kB 00:00 (71/146): libxcb-devel-1.13.1-9.el9.aarch64.rpm 15 MB/s | 1.5 MB 00:00 (72/146): libxcrypt-devel-4.4.18-3.el9.aarch64. 357 kB/s | 32 kB 00:00 (73/146): mesa-libGLU-9.0.1-6.el9.aarch64.rpm 1.4 MB/s | 136 kB 00:00 (74/146): xcb-util-0.4.0-19.el9.aarch64.rpm 230 kB/s | 21 kB 00:00 (75/146): xcb-util-wm-0.4.1-22.el9.aarch64.rpm 364 kB/s | 34 kB 00:00 (76/146): fontconfig-2.14.0-2.el9_1.aarch64.rpm 3.1 MB/s | 303 kB 00:00 (77/146): libwayland-server-1.21.0-1.el9.aarch6 466 kB/s | 42 kB 00:00 (78/146): libwayland-client-1.21.0-1.el9.aarch6 345 kB/s | 34 kB 00:00 (79/146): libwebp-1.2.0-8.el9_3.aarch64.rpm 2.8 MB/s | 266 kB 00:00 (80/146): qt5-qtsvg-devel-5.15.9-2.el9.aarch64. 352 kB/s | 34 kB 00:00 (81/146): qt5-qtsvg-5.15.9-2.el9.aarch64.rpm 1.8 MB/s | 189 kB 00:00 (82/146): qt5-rpm-macros-5.15.9-1.el9.noarch.rp 126 kB/s | 11 kB 00:00 (83/146): zlib-devel-1.2.11-40.el9.aarch64.rpm 516 kB/s | 47 kB 00:00 (84/146): python3-rpm-generators-12-9.el9.noarc 319 kB/s | 29 kB 00:00 (85/146): libjpeg-turbo-2.0.90-7.el9.aarch64.rp 1.2 MB/s | 172 kB 00:00 (86/146): libuv-1.42.0-2.el9_4.aarch64.rpm 1.4 MB/s | 147 kB 00:00 (87/146): python3-rpm-macros-3.9-54.el9.noarch. 115 kB/s | 10 kB 00:00 (88/146): pcre2-utf16-10.40-6.el9.aarch64.rpm 1.8 MB/s | 197 kB 00:00 (89/146): python-rpm-macros-3.9-54.el9.noarch.r 157 kB/s | 16 kB 00:00 (90/146): xorg-x11-proto-devel-2024.1-1.el9.noa 3.0 MB/s | 314 kB 00:00 (91/146): libX11-devel-1.7.0-11.el9.aarch64.rpm 11 MB/s | 1.1 MB 00:00 (92/146): libdrm-devel-2.4.123-2.el9.aarch64.rp 2.1 MB/s | 192 kB 00:00 (93/146): libX11-1.7.0-11.el9.aarch64.rpm 6.5 MB/s | 638 kB 00:00 (94/146): libdrm-2.4.123-2.el9.aarch64.rpm 710 kB/s | 138 kB 00:00 (95/146): libX11-common-1.7.0-11.el9.noarch.rpm 2.2 MB/s | 209 kB 00:00 (96/146): libX11-xcb-1.7.0-11.el9.aarch64.rpm 134 kB/s | 12 kB 00:00 (97/146): qt5-qtbase-common-5.15.9-11.el9_6.noa 94 kB/s | 8.6 kB 00:00 (98/146): qt5-qtbase-5.15.9-11.el9_6.aarch64.rp 30 MB/s | 3.5 MB 00:00 (99/146): qt5-qtbase-devel-5.15.9-11.el9_6.aarc 33 MB/s | 3.6 MB 00:00 (100/146): 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Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : cmake-filesystem-3.26.5-3.el9_7.aarch64 1/146 Installing : expat-2.5.0-5.el9_7.1.aarch64 2/146 Installing : libdrm-2.4.123-2.el9.aarch64 3/146 Installing : libX11-xcb-1.7.0-11.el9.aarch64 4/146 Installing : libglvnd-1:1.3.4-1.el9.aarch64 5/146 Installing : python-rpm-macros-3.9-54.el9.noarch 6/146 Installing : libmpc-1.2.1-4.el9.aarch64 7/146 Installing : libpng-2:1.6.37-12.el9_7.1.aarch64 8/146 Installing : python3-rpm-macros-3.9-54.el9.noarch 9/146 Installing : kernel-headers-5.14.0-611.27.1.el9_7.aarch64 10/146 Installing : glibc-devel-2.34-231.el9_7.2.aarch64 11/146 Installing : libxcrypt-devel-4.4.18-3.el9.aarch64 12/146 Installing : emacs-filesystem-1:27.2-18.el9.noarch 13/146 Installing : perl-File-Find-1.37-481.1.el9_6.noarch 14/146 Installing : xorg-x11-proto-devel-2024.1-1.el9.noarch 15/146 Installing : libjpeg-turbo-2.0.90-7.el9.aarch64 16/146 Installing : libwayland-server-1.21.0-1.el9.aarch64 17/146 Installing : 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graphite2-1.3.14-9.el9.aarch64 3/146 Verifying : libcbor-0.7.0-5.el9.aarch64 4/146 Verifying : libgudev-237-1.el9.aarch64 5/146 Verifying : libproxy-0.4.15-35.el9.aarch64 6/146 Verifying : python3-pyparsing-2.4.7-9.el9.noarch 7/146 Verifying : libedit-3.1-38.20210216cvs.el9.aarch64 8/146 Verifying : dbus-libs-1:1.12.20-8.el9.aarch64 9/146 Verifying : harfbuzz-2.7.4-10.el9.aarch64 10/146 Verifying : make-1:4.3-8.el9.aarch64 11/146 Verifying : libfido2-1.13.0-2.el9.aarch64 12/146 Verifying : python3-pip-wheel-21.3.1-1.el9.noarch 13/146 Verifying : freetype-2.10.4-10.el9_5.aarch64 14/146 Verifying : nettle-3.10.1-1.el9.aarch64 15/146 Verifying : libicu-67.1-10.el9_6.aarch64 16/146 Verifying : avahi-libs-0.8-23.el9.aarch64 17/146 Verifying : gnutls-3.8.3-9.el9.aarch64 18/146 Verifying : libatomic-11.5.0-11.el9.aarch64 19/146 Verifying : python3-setuptools-53.0.0-15.el9.noarch 20/146 Verifying : python3-setuptools-wheel-53.0.0-15.el9.noarch 21/146 Verifying : less-590-6.el9.aarch64 22/146 Verifying : vim-filesystem-2:8.2.2637-23.el9_7.noarch 23/146 Verifying : expat-2.5.0-5.el9_7.1.aarch64 24/146 Verifying : openssh-8.7p1-47.el9_7.aarch64 25/146 Verifying : openssh-clients-8.7p1-47.el9_7.aarch64 26/146 Verifying : libpng-2:1.6.37-12.el9_7.1.aarch64 27/146 Verifying : cups-libs-1:2.3.3op2-34.el9_7.2.aarch64 28/146 Verifying : glib2-2.68.4-18.el9_7.1.aarch64 29/146 Verifying : python3-3.9.25-3.el9_7.aarch64 30/146 Verifying : python3-libs-3.9.25-3.el9_7.aarch64 31/146 Verifying : fftw-devel-3.3.8-12.el9.aarch64 32/146 Verifying : glx-utils-8.4.0-12.20210504git0f9e7d9.el9.aarch6 33/146 Verifying : libXau-devel-1.0.9-8.el9.aarch64 34/146 Verifying : libglvnd-egl-1:1.3.4-1.el9.aarch64 35/146 Verifying : libxkbcommon-1.0.3-4.el9.aarch64 36/146 Verifying : libxshmfence-1.3-10.el9.aarch64 37/146 Verifying : mtdev-1.1.5-22.el9.aarch64 38/146 Verifying : perl-Error-1:0.17029-7.el9.noarch 39/146 Verifying : xkeyboard-config-2.33-2.el9.noarch 40/146 Verifying : fftw-libs-double-3.3.8-12.el9.aarch64 41/146 Verifying : libXext-1.3.4-8.el9.aarch64 42/146 Verifying : libevdev-1.11.0-3.el9.aarch64 43/146 Verifying : libglvnd-1:1.3.4-1.el9.aarch64 44/146 Verifying : libglvnd-devel-1:1.3.4-1.el9.aarch64 45/146 Verifying : libglvnd-gles-1:1.3.4-1.el9.aarch64 46/146 Verifying : libmpc-1.2.1-4.el9.aarch64 47/146 Verifying : mesa-libGLU-devel-9.0.1-6.el9.aarch64 48/146 Verifying : python3-packaging-20.9-5.el9.noarch 49/146 Verifying : xcb-util-image-0.4.0-19.el9.aarch64 50/146 Verifying : xcb-util-keysyms-0.4.0-17.el9.aarch64 51/146 Verifying : xml-common-0.6.3-58.el9.noarch 52/146 Verifying : fftw-3.3.8-12.el9.aarch64 53/146 Verifying : fftw-libs-single-3.3.8-12.el9.aarch64 54/146 Verifying : gl-manpages-1.1-24.20190306.el9.noarch 55/146 Verifying : langpacks-core-font-en-3.0-16.el9.noarch 56/146 Verifying : libSM-1.2.3-10.el9.aarch64 57/146 Verifying : libXau-1.0.9-8.el9.aarch64 58/146 Verifying : libglvnd-core-devel-1:1.3.4-1.el9.aarch64 59/146 Verifying : libglvnd-opengl-1:1.3.4-1.el9.aarch64 60/146 Verifying : libxkbcommon-x11-1.0.3-4.el9.aarch64 61/146 Verifying : perl-TermReadKey-2.38-11.el9.aarch64 62/146 Verifying : xcb-util-renderutil-0.3.9-20.el9.aarch64 63/146 Verifying : fftw-libs-3.3.8-12.el9.aarch64 64/146 Verifying : fftw-libs-long-3.3.8-12.el9.aarch64 65/146 Verifying : jbigkit-libs-2.1-23.el9.aarch64 66/146 Verifying : libICE-1.0.10-8.el9.aarch64 67/146 Verifying : libXxf86vm-1.1.4-18.el9.aarch64 68/146 Verifying : libglvnd-glx-1:1.3.4-1.el9.aarch64 69/146 Verifying : libxcb-1.13.1-9.el9.aarch64 70/146 Verifying : libxcb-devel-1.13.1-9.el9.aarch64 71/146 Verifying : libxcrypt-devel-4.4.18-3.el9.aarch64 72/146 Verifying : mesa-libGLU-9.0.1-6.el9.aarch64 73/146 Verifying : xcb-util-0.4.0-19.el9.aarch64 74/146 Verifying : xcb-util-wm-0.4.1-22.el9.aarch64 75/146 Verifying : fontconfig-2.14.0-2.el9_1.aarch64 76/146 Verifying : libwayland-client-1.21.0-1.el9.aarch64 77/146 Verifying : libwayland-server-1.21.0-1.el9.aarch64 78/146 Verifying : libwebp-1.2.0-8.el9_3.aarch64 79/146 Verifying : qt5-qtsvg-5.15.9-2.el9.aarch64 80/146 Verifying : qt5-qtsvg-devel-5.15.9-2.el9.aarch64 81/146 Verifying : qt5-rpm-macros-5.15.9-1.el9.noarch 82/146 Verifying : zlib-devel-1.2.11-40.el9.aarch64 83/146 Verifying : libjpeg-turbo-2.0.90-7.el9.aarch64 84/146 Verifying : python3-rpm-generators-12-9.el9.noarch 85/146 Verifying : libuv-1:1.42.0-2.el9_4.aarch64 86/146 Verifying : python3-rpm-macros-3.9-54.el9.noarch 87/146 Verifying : pcre2-utf16-10.40-6.el9.aarch64 88/146 Verifying : python-rpm-macros-3.9-54.el9.noarch 89/146 Verifying : xorg-x11-proto-devel-2024.1-1.el9.noarch 90/146 Verifying : libX11-devel-1.7.0-11.el9.aarch64 91/146 Verifying : libdrm-2.4.123-2.el9.aarch64 92/146 Verifying : libdrm-devel-2.4.123-2.el9.aarch64 93/146 Verifying : libX11-1.7.0-11.el9.aarch64 94/146 Verifying : libX11-common-1.7.0-11.el9.noarch 95/146 Verifying : libX11-xcb-1.7.0-11.el9.aarch64 96/146 Verifying : qt5-qtbase-5.15.9-11.el9_6.aarch64 97/146 Verifying : qt5-qtbase-common-5.15.9-11.el9_6.noarch 98/146 Verifying : qt5-qtbase-devel-5.15.9-11.el9_6.aarch64 99/146 Verifying : qt5-qtbase-gui-5.15.9-11.el9_6.aarch64 100/146 Verifying : git-2.47.3-1.el9_6.aarch64 101/146 Verifying : git-core-2.47.3-1.el9_6.aarch64 102/146 Verifying : git-core-doc-2.47.3-1.el9_6.noarch 103/146 Verifying : libinput-1.19.3-7.el9_6.aarch64 104/146 Verifying : perl-DynaLoader-1.47-481.1.el9_6.aarch64 105/146 Verifying : perl-English-1.11-481.1.el9_6.noarch 106/146 Verifying : perl-File-Find-1.37-481.1.el9_6.noarch 107/146 Verifying : perl-Git-2.47.3-1.el9_6.noarch 108/146 Verifying : perl-lib-0.65-481.1.el9_6.aarch64 109/146 Verifying : gcc-11.5.0-11.el9.aarch64 110/146 Verifying : libubsan-11.5.0-11.el9.aarch64 111/146 Verifying : mesa-dri-drivers-25.0.7-3.el9_7.aarch64 112/146 Verifying : valgrind-devel-1:3.25.1-3.el9.aarch64 113/146 Verifying : vulkan-headers-1.4.313.0-1.el9.noarch 114/146 Verifying : annobin-12.98-1.el9.aarch64 115/146 Verifying : cpp-11.5.0-11.el9.aarch64 116/146 Verifying : emacs-filesystem-1:27.2-18.el9.noarch 117/146 Verifying : gcc-c++-11.5.0-11.el9.aarch64 118/146 Verifying : gcc-plugin-annobin-11.5.0-11.el9.aarch64 119/146 Verifying : libasan-11.5.0-11.el9.aarch64 120/146 Verifying : libstdc++-devel-11.5.0-11.el9.aarch64 121/146 Verifying : llvm-filesystem-20.1.8-3.el9.aarch64 122/146 Verifying : llvm-libs-20.1.8-3.el9.aarch64 123/146 Verifying : mesa-filesystem-25.0.7-3.el9_7.aarch64 124/146 Verifying : mesa-libEGL-25.0.7-3.el9_7.aarch64 125/146 Verifying : mesa-libEGL-devel-25.0.7-3.el9_7.aarch64 126/146 Verifying : mesa-libGL-25.0.7-3.el9_7.aarch64 127/146 Verifying : mesa-libGL-devel-25.0.7-3.el9_7.aarch64 128/146 Verifying : mesa-libgbm-25.0.7-3.el9_7.aarch64 129/146 Verifying : spirv-tools-libs-2025.2-1.el9.aarch64 130/146 Verifying : vulkan-loader-1.4.313.0-1.el9.aarch64 131/146 Verifying : vulkan-loader-devel-1.4.313.0-1.el9.aarch64 132/146 Verifying : glibc-devel-2.34-231.el9_7.2.aarch64 133/146 Verifying : libtiff-4.4.0-15.el9_7.2.aarch64 134/146 Verifying : libtiff-devel-4.4.0-15.el9_7.2.aarch64 135/146 Verifying : libwacom-1.12.1-6.el9_7.aarch64 136/146 Verifying : libwacom-data-1.12.1-6.el9_7.noarch 137/146 Verifying : libpng-devel-2:1.6.37-12.el9_7.1.aarch64 138/146 Verifying : cmake-3.26.5-3.el9_7.aarch64 139/146 Verifying : cmake-data-3.26.5-3.el9_7.noarch 140/146 Verifying : cmake-filesystem-3.26.5-3.el9_7.aarch64 141/146 Verifying : cmake-rpm-macros-3.26.5-3.el9_7.noarch 142/146 Verifying : python3-devel-3.9.25-3.el9_7.aarch64 143/146 Verifying : kernel-headers-5.14.0-611.27.1.el9_7.aarch64 144/146 Verifying : eigen3-devel-3.4.0-2.el9.noarch 145/146 Verifying : pyproject-rpm-macros-1.16.2-1.el9.noarch 146/146 Installed products updated. Installed: annobin-12.98-1.el9.aarch64 avahi-libs-0.8-23.el9.aarch64 cmake-3.26.5-3.el9_7.aarch64 cmake-data-3.26.5-3.el9_7.noarch cmake-filesystem-3.26.5-3.el9_7.aarch64 cmake-rpm-macros-3.26.5-3.el9_7.noarch cpp-11.5.0-11.el9.aarch64 cups-libs-1:2.3.3op2-34.el9_7.2.aarch64 dbus-libs-1:1.12.20-8.el9.aarch64 dejavu-sans-fonts-2.37-18.el9.noarch eigen3-devel-3.4.0-2.el9.noarch emacs-filesystem-1:27.2-18.el9.noarch expat-2.5.0-5.el9_7.1.aarch64 fftw-3.3.8-12.el9.aarch64 fftw-devel-3.3.8-12.el9.aarch64 fftw-libs-3.3.8-12.el9.aarch64 fftw-libs-double-3.3.8-12.el9.aarch64 fftw-libs-long-3.3.8-12.el9.aarch64 fftw-libs-single-3.3.8-12.el9.aarch64 fontconfig-2.14.0-2.el9_1.aarch64 fonts-filesystem-1:2.0.5-7.el9.1.noarch freetype-2.10.4-10.el9_5.aarch64 gcc-11.5.0-11.el9.aarch64 gcc-c++-11.5.0-11.el9.aarch64 gcc-plugin-annobin-11.5.0-11.el9.aarch64 git-2.47.3-1.el9_6.aarch64 git-core-2.47.3-1.el9_6.aarch64 git-core-doc-2.47.3-1.el9_6.noarch gl-manpages-1.1-24.20190306.el9.noarch glib2-2.68.4-18.el9_7.1.aarch64 glibc-devel-2.34-231.el9_7.2.aarch64 glx-utils-8.4.0-12.20210504git0f9e7d9.el9.aarch64 gnutls-3.8.3-9.el9.aarch64 graphite2-1.3.14-9.el9.aarch64 harfbuzz-2.7.4-10.el9.aarch64 jbigkit-libs-2.1-23.el9.aarch64 kernel-headers-5.14.0-611.27.1.el9_7.aarch64 langpacks-core-font-en-3.0-16.el9.noarch less-590-6.el9.aarch64 libICE-1.0.10-8.el9.aarch64 libSM-1.2.3-10.el9.aarch64 libX11-1.7.0-11.el9.aarch64 libX11-common-1.7.0-11.el9.noarch libX11-devel-1.7.0-11.el9.aarch64 libX11-xcb-1.7.0-11.el9.aarch64 libXau-1.0.9-8.el9.aarch64 libXau-devel-1.0.9-8.el9.aarch64 libXext-1.3.4-8.el9.aarch64 libXxf86vm-1.1.4-18.el9.aarch64 libasan-11.5.0-11.el9.aarch64 libatomic-11.5.0-11.el9.aarch64 libcbor-0.7.0-5.el9.aarch64 libdrm-2.4.123-2.el9.aarch64 libdrm-devel-2.4.123-2.el9.aarch64 libedit-3.1-38.20210216cvs.el9.aarch64 libevdev-1.11.0-3.el9.aarch64 libfido2-1.13.0-2.el9.aarch64 libglvnd-1:1.3.4-1.el9.aarch64 libglvnd-core-devel-1:1.3.4-1.el9.aarch64 libglvnd-devel-1:1.3.4-1.el9.aarch64 libglvnd-egl-1:1.3.4-1.el9.aarch64 libglvnd-gles-1:1.3.4-1.el9.aarch64 libglvnd-glx-1:1.3.4-1.el9.aarch64 libglvnd-opengl-1:1.3.4-1.el9.aarch64 libgudev-237-1.el9.aarch64 libicu-67.1-10.el9_6.aarch64 libinput-1.19.3-7.el9_6.aarch64 libjpeg-turbo-2.0.90-7.el9.aarch64 libmpc-1.2.1-4.el9.aarch64 libpng-2:1.6.37-12.el9_7.1.aarch64 libpng-devel-2:1.6.37-12.el9_7.1.aarch64 libproxy-0.4.15-35.el9.aarch64 libstdc++-devel-11.5.0-11.el9.aarch64 libtiff-4.4.0-15.el9_7.2.aarch64 libtiff-devel-4.4.0-15.el9_7.2.aarch64 libubsan-11.5.0-11.el9.aarch64 libuv-1:1.42.0-2.el9_4.aarch64 libwacom-1.12.1-6.el9_7.aarch64 libwacom-data-1.12.1-6.el9_7.noarch libwayland-client-1.21.0-1.el9.aarch64 libwayland-server-1.21.0-1.el9.aarch64 libwebp-1.2.0-8.el9_3.aarch64 libxcb-1.13.1-9.el9.aarch64 libxcb-devel-1.13.1-9.el9.aarch64 libxcrypt-devel-4.4.18-3.el9.aarch64 libxkbcommon-1.0.3-4.el9.aarch64 libxkbcommon-x11-1.0.3-4.el9.aarch64 libxshmfence-1.3-10.el9.aarch64 llvm-filesystem-20.1.8-3.el9.aarch64 llvm-libs-20.1.8-3.el9.aarch64 make-1:4.3-8.el9.aarch64 mesa-dri-drivers-25.0.7-3.el9_7.aarch64 mesa-filesystem-25.0.7-3.el9_7.aarch64 mesa-libEGL-25.0.7-3.el9_7.aarch64 mesa-libEGL-devel-25.0.7-3.el9_7.aarch64 mesa-libGL-25.0.7-3.el9_7.aarch64 mesa-libGL-devel-25.0.7-3.el9_7.aarch64 mesa-libGLU-9.0.1-6.el9.aarch64 mesa-libGLU-devel-9.0.1-6.el9.aarch64 mesa-libgbm-25.0.7-3.el9_7.aarch64 mtdev-1.1.5-22.el9.aarch64 nettle-3.10.1-1.el9.aarch64 openssh-8.7p1-47.el9_7.aarch64 openssh-clients-8.7p1-47.el9_7.aarch64 pcre2-utf16-10.40-6.el9.aarch64 perl-DynaLoader-1.47-481.1.el9_6.aarch64 perl-English-1.11-481.1.el9_6.noarch perl-Error-1:0.17029-7.el9.noarch perl-File-Find-1.37-481.1.el9_6.noarch perl-Git-2.47.3-1.el9_6.noarch perl-TermReadKey-2.38-11.el9.aarch64 perl-lib-0.65-481.1.el9_6.aarch64 pyproject-rpm-macros-1.16.2-1.el9.noarch python-rpm-macros-3.9-54.el9.noarch python3-3.9.25-3.el9_7.aarch64 python3-devel-3.9.25-3.el9_7.aarch64 python3-libs-3.9.25-3.el9_7.aarch64 python3-packaging-20.9-5.el9.noarch python3-pip-wheel-21.3.1-1.el9.noarch python3-pyparsing-2.4.7-9.el9.noarch python3-rpm-generators-12-9.el9.noarch python3-rpm-macros-3.9-54.el9.noarch python3-setuptools-53.0.0-15.el9.noarch python3-setuptools-wheel-53.0.0-15.el9.noarch qt5-qtbase-5.15.9-11.el9_6.aarch64 qt5-qtbase-common-5.15.9-11.el9_6.noarch qt5-qtbase-devel-5.15.9-11.el9_6.aarch64 qt5-qtbase-gui-5.15.9-11.el9_6.aarch64 qt5-qtsvg-5.15.9-2.el9.aarch64 qt5-qtsvg-devel-5.15.9-2.el9.aarch64 qt5-rpm-macros-5.15.9-1.el9.noarch spirv-tools-libs-2025.2-1.el9.aarch64 valgrind-devel-1:3.25.1-3.el9.aarch64 vim-filesystem-2:8.2.2637-23.el9_7.noarch vulkan-headers-1.4.313.0-1.el9.noarch vulkan-loader-1.4.313.0-1.el9.aarch64 vulkan-loader-devel-1.4.313.0-1.el9.aarch64 xcb-util-0.4.0-19.el9.aarch64 xcb-util-image-0.4.0-19.el9.aarch64 xcb-util-keysyms-0.4.0-17.el9.aarch64 xcb-util-renderutil-0.3.9-20.el9.aarch64 xcb-util-wm-0.4.1-22.el9.aarch64 xkeyboard-config-2.33-2.el9.noarch xml-common-0.6.3-58.el9.noarch xorg-x11-proto-devel-2024.1-1.el9.noarch zlib-devel-1.2.11-40.el9.aarch64 Complete! Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1767484800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-1.el9.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 84 kB/s | 1.5 kB 00:00 Red Hat Enterprise Linux - BaseOS 25 kB/s | 4.1 kB 00:00 Red Hat Enterprise Linux - AppStream 30 kB/s | 4.5 kB 00:00 Red Hat Enterprise Linux - CodeReady Linux Buil 29 kB/s | 4.5 kB 00:00 Extra Packages for Enterprise Linux 9 - aarch64 120 kB/s | 6.7 kB 00:00 Package eigen3-devel-3.4.0-2.el9.noarch is already installed. Package fftw-devel-3.3.8-12.el9.aarch64 is already installed. Package gcc-c++-11.5.0-11.el9.aarch64 is already installed. Package git-2.47.3-1.el9_6.aarch64 is already installed. Package libpng-devel-2:1.6.37-12.el9_7.1.aarch64 is already installed. Package libtiff-devel-4.4.0-15.el9_7.2.aarch64 is already installed. Package mesa-libGL-devel-25.0.7-3.el9_7.aarch64 is already installed. Package mesa-libGLU-devel-9.0.1-6.el9.aarch64 is already installed. Package python3-3.9.25-3.el9_7.aarch64 is already installed. Package python3-devel-3.9.25-3.el9_7.aarch64 is already installed. Package qt5-qtbase-devel-5.15.9-11.el9_6.aarch64 is already installed. Package qt5-qtsvg-devel-5.15.9-2.el9.aarch64 is already installed. Package zlib-devel-1.2.11-40.el9.aarch64 is already installed. Dependencies resolved. Nothing to do. Complete! Finish: build setup for mrtrix3-3.0.8-1.el9.src.rpm Start: rpmbuild mrtrix3-3.0.8-1.el9.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1767484800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.zd32qK + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf mrtrix3-3.0.8 + /usr/bin/gzip -dc /builddir/build/SOURCES/mrtrix3-3.0.8.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd mrtrix3-3.0.8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.O7JnL4 + umask 022 + cd /builddir/build/BUILD + cd mrtrix3-3.0.8 + sed -i 's|#!/usr/bin/env python|#!/usr/bin/python3|' configure build + export 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert' + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert' + export 'CXXFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + export 'EIGEN_CFLAGS=-I /usr/include/eigen3 -std=c++14' + EIGEN_CFLAGS='-I /usr/include/eigen3 -std=c++14' + export 'LINKFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + LINKFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + export QMAKE=/usr/bin/qmake-qt5 + QMAKE=/usr/bin/qmake-qt5 + export MOC=/usr/bin/moc-qt5 + MOC=/usr/bin/moc-qt5 + export RCC=/usr/bin/rcc-qt5 + RCC=/usr/bin/rcc-qt5 + ./configure -noshared -nogui -openmp MRtrix build type requested: release version with nogui, noshared, openmp Detecting OS: linux Looking for compiler [clang++]: not found Looking for compiler [g++]: g++ (GCC) 11.5.0 20240719 (Red Hat 11.5.0-11) Checking for C++11 compliance: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.2.11 Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.4.0 Checking for PNG library: Header: 1.6.37; library: 1.6.37 Checking for FFTW library: fftw-3.3.8 Checking for OpenMP support: ok writing configuration to file './config': ok + ./build ( 1/400) [CC] tmp/core/image_io/tiff.o ( 2/400) [CC] tmp/core/axes.o ( 3/400) [CC] tmp/core/formats/mrtrix.o ( 4/400) [CC] tmp/core/file/dicom/patient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/axes.cpp -o tmp/core/axes.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/axes.h:24, from core/axes.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/axes.h:24, from core/axes.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/axes.h:24, from core/axes.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/axes.h:24, from core/axes.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 5/400) [CC] tmp/core/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/tiff.cpp -o tmp/core/image_io/tiff.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 6/400) [CC] tmp/core/file/dicom/select_cmdline.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/patient.cpp -o tmp/core/file/dicom/patient.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from ./core/file/dicom/study.h:21, from ./core/file/dicom/patient.h:21, from core/file/dicom/patient.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from ./core/file/dicom/study.h:21, from ./core/file/dicom/patient.h:21, from core/file/dicom/patient.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from ./core/file/dicom/study.h:21, from ./core/file/dicom/patient.h:21, from core/file/dicom/patient.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from ./core/file/dicom/study.h:21, from ./core/file/dicom/patient.h:21, from core/file/dicom/patient.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 7/400) [CC] tmp/core/formats/nifti1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/mrtrix.cpp -o tmp/core/mrtrix.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/mrtrix.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/mrtrix.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/mrtrix.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/mrtrix.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 8/400) [CC] tmp/core/formats/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti1.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti1.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti1.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti1.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 9/400) [CC] tmp/core/image_io/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mrtrix.cpp -o tmp/core/formats/mrtrix.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mrtrix.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mrtrix.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mrtrix.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mrtrix.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 10/400) [CC] tmp/core/file/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/select_cmdline.cpp -o tmp/core/file/dicom/select_cmdline.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/datatype.h:20, from ./core/file/dicom/image.h:22, from core/file/dicom/select_cmdline.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/datatype.h:20, from ./core/file/dicom/image.h:22, from core/file/dicom/select_cmdline.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/datatype.h:20, from ./core/file/dicom/image.h:22, from core/file/dicom/select_cmdline.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/datatype.h:20, from ./core/file/dicom/image.h:22, from core/file/dicom/select_cmdline.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 11/400) [CC] tmp/core/image_io/ram.o ( 12/400) [CC] tmp/core/formats/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/dicom.cpp -o tmp/core/formats/dicom.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/formats/dicom.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/formats/dicom.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/formats/dicom.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/formats/dicom.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 13/400) [CC] tmp/core/metadata/slice_encoding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/png.cpp -o tmp/core/image_io/png.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/image_io/png.h:22, from core/image_io/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/image_io/png.h:22, from core/image_io/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/image_io/png.h:22, from core/image_io/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/image_io/png.h:22, from core/image_io/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 14/400) [CC] tmp/core/file/key_value.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/png.cpp -o tmp/core/file/png.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/file/png.h:24, from core/file/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/file/png.h:24, from core/file/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/file/png.h:24, from core/file/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/file/png.h:24, from core/file/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 15/400) [CC] tmp/core/app.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/key_value.cpp -o tmp/core/file/key_value.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/key_value.h:21, from core/file/key_value.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/key_value.h:21, from core/file/key_value.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/key_value.h:21, from core/file/key_value.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/key_value.h:21, from core/file/key_value.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 16/400) [CC] tmp/core/image_io/mosaic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/metadata/slice_encoding.cpp -o tmp/core/metadata/slice_encoding.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/metadata/slice_encoding.h:22, from core/metadata/slice_encoding.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/metadata/slice_encoding.h:22, from core/metadata/slice_encoding.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/metadata/slice_encoding.h:22, from core/metadata/slice_encoding.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/metadata/slice_encoding.h:22, from core/metadata/slice_encoding.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 17/400) [CC] tmp/core/formats/par.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/mosaic.cpp -o tmp/core/image_io/mosaic.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/mosaic.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/mosaic.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/mosaic.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/mosaic.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 18/400) [CC] tmp/core/misc/bitset.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mgh.cpp -o tmp/core/formats/mgh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mgh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mgh.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mgh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mgh.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 19/400) [CC] tmp/core/file/dicom/series.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/misc/bitset.cpp -o tmp/core/misc/bitset.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/misc/bitset.h:24, from core/misc/bitset.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/misc/bitset.h:24, from core/misc/bitset.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/misc/bitset.h:24, from core/misc/bitset.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/misc/bitset.h:24, from core/misc/bitset.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 20/400) [CC] tmp/core/file/config.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/series.cpp -o tmp/core/file/dicom/series.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from core/file/dicom/series.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from core/file/dicom/series.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from core/file/dicom/series.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from core/file/dicom/series.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 21/400) [CC] tmp/core/image_io/null.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/app.cpp -o tmp/core/app.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/app.cpp:24: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/app.cpp:24: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/app.cpp:24: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/app.cpp:24: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 22/400) [CC] tmp/src/exec_version.o ( 23/400) [CC] tmp/core/file/dicom/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/config.cpp -o tmp/core/file/config.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/file/config.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/file/config.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/file/config.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/file/config.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 24/400) [CC] tmp/core/formats/nifti2_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/null.cpp -o tmp/core/image_io/null.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from ./core/image_io/null.h:20, from core/image_io/null.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from ./core/image_io/null.h:20, from core/image_io/null.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from ./core/image_io/null.h:20, from core/image_io/null.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from ./core/image_io/null.h:20, from core/image_io/null.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 25/400) [CC] tmp/core/stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/nifti2_gz.cpp -o tmp/core/formats/nifti2_gz.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti2_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti2_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti2_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti2_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 26/400) [CC] tmp/core/dwi/gradient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/stats.cpp -o tmp/core/stats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/stats.h:21, from core/stats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/stats.h:21, from core/stats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/stats.h:21, from core/stats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/stats.h:21, from core/stats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 27/400) [CC] tmp/core/file/dicom/tree.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/par.cpp -o tmp/core/formats/par.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/par.cpp:24: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/par.cpp:24: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/par.cpp:24: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/par.cpp:24: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 28/400) [CC] tmp/core/file/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/tiff.cpp -o tmp/core/file/tiff.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/tiff.h:22, from core/file/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/tiff.h:22, from core/file/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/tiff.h:22, from core/file/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/tiff.h:22, from core/file/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 29/400) [CC] tmp/core/file/mmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/mapper.cpp -o tmp/core/file/dicom/mapper.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/dicom/mapper.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/dicom/mapper.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/dicom/mapper.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/dicom/mapper.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 30/400) [CC] tmp/core/math/stats/glm.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/tree.cpp -o tmp/core/file/dicom/tree.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/file/dicom/tree.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/file/dicom/tree.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/file/dicom/tree.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/file/dicom/tree.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 31/400) [CC] tmp/core/file/nifti_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/mmap.cpp -o tmp/core/file/mmap.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/file/mmap.cpp:34: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/file/mmap.cpp:34: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/file/mmap.cpp:34: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/file/mmap.cpp:34: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 32/400) [CC] tmp/core/math/bessel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/bessel.cpp -o tmp/core/math/bessel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/chebyshev.h:20, from ./core/math/bessel.h:22, from core/math/bessel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/chebyshev.h:20, from ./core/math/bessel.h:22, from core/math/bessel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/chebyshev.h:20, from ./core/math/bessel.h:22, from core/math/bessel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/chebyshev.h:20, from ./core/math/bessel.h:22, from core/math/bessel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 33/400) [CC] tmp/core/file/dicom/quick_scan.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/quick_scan.cpp -o tmp/core/file/dicom/quick_scan.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/dicom/quick_scan.h:21, from core/file/dicom/quick_scan.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/dicom/quick_scan.h:21, from core/file/dicom/quick_scan.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/dicom/quick_scan.h:21, from core/file/dicom/quick_scan.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/dicom/quick_scan.h:21, from core/file/dicom/quick_scan.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 34/400) [CC] tmp/core/datatype.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/dwi/gradient.cpp -o tmp/core/dwi/gradient.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/dwi/gradient.h:20, from core/dwi/gradient.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/dwi/gradient.h:20, from core/dwi/gradient.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/dwi/gradient.h:20, from core/dwi/gradient.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/dwi/gradient.h:20, from core/dwi/gradient.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 35/400) [CC] tmp/core/math/erfinv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/datatype.cpp -o tmp/core/datatype.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/datatype.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/datatype.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/datatype.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/datatype.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 36/400) [CC] tmp/core/math/zstatistic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/nifti_utils.cpp -o tmp/core/file/nifti_utils.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/nifti_utils.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/nifti_utils.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/nifti_utils.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/nifti_utils.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 37/400) [CC] tmp/core/formats/xds.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/erfinv.cpp -o tmp/core/math/erfinv.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/erfinv.h:18, from core/math/erfinv.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/erfinv.h:18, from core/math/erfinv.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/erfinv.h:18, from core/math/erfinv.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/erfinv.h:18, from core/math/erfinv.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 38/400) [CC] tmp/core/metadata/bids.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/xds.cpp -o tmp/core/formats/xds.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from core/formats/xds.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from core/formats/xds.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from core/formats/xds.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from core/formats/xds.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 39/400) [CC] tmp/core/file/dicom/image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/zstatistic.cpp -o tmp/core/math/zstatistic.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/math/stats/typedefs.h:20, from ./core/math/zstatistic.h:24, from core/math/zstatistic.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/math/stats/typedefs.h:20, from ./core/math/zstatistic.h:24, from core/math/zstatistic.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/math/stats/typedefs.h:20, from ./core/math/zstatistic.h:24, from core/math/zstatistic.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/math/stats/typedefs.h:20, from ./core/math/zstatistic.h:24, from core/math/zstatistic.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 40/400) [CC] tmp/core/version.o ( 41/400) [CC] tmp/core/formats/nifti2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/metadata/bids.cpp -o tmp/core/metadata/bids.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from ./core/metadata/bids.h:21, from core/metadata/bids.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from ./core/metadata/bids.h:21, from core/metadata/bids.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from ./core/metadata/bids.h:21, from core/metadata/bids.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from ./core/metadata/bids.h:21, from core/metadata/bids.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 42/400) [CC] tmp/core/image_io/scratch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/nifti2.cpp -o tmp/core/formats/nifti2.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti2.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti2.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti2.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti2.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 43/400) [CC] tmp/core/header.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from ./core/image_io/scratch.h:20, from core/image_io/scratch.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from ./core/image_io/scratch.h:20, from core/image_io/scratch.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from ./core/image_io/scratch.h:20, from core/image_io/scratch.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from ./core/image_io/scratch.h:20, from core/image_io/scratch.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 44/400) [CC] tmp/core/stride.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from core/file/dicom/image.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from core/file/dicom/image.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from core/file/dicom/image.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from core/file/dicom/image.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 45/400) [CC] tmp/core/math/stats/shuffle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/stride.cpp -o tmp/core/stride.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/stride.h:20, from core/stride.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/stride.h:20, from core/stride.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/stride.h:20, from core/stride.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/stride.h:20, from core/stride.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 46/400) [CC] tmp/core/image_io/default.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/default.cpp -o tmp/core/image_io/default.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/default.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/default.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/default.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/default.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 47/400) [CC] tmp/core/image_io/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/base.cpp -o tmp/core/image_io/base.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from core/image_io/base.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from core/image_io/base.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from core/image_io/base.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from core/image_io/base.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 48/400) [CC] tmp/core/formats/mrtrix_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/stats/shuffle.cpp -o tmp/core/math/stats/shuffle.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/shuffle.h:21, from core/math/stats/shuffle.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/shuffle.h:21, from core/math/stats/shuffle.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/shuffle.h:21, from core/math/stats/shuffle.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/shuffle.h:21, from core/math/stats/shuffle.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 49/400) [CC] tmp/core/signal_handler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/signal_handler.cpp -o tmp/core/signal_handler.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/signal_handler.cpp:25: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/signal_handler.cpp:25: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/signal_handler.cpp:25: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/signal_handler.cpp:25: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 50/400) [CC] tmp/core/image_io/variable_scaling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mrtrix_utils.cpp -o tmp/core/formats/mrtrix_utils.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/mrtrix_utils.h:20, from core/formats/mrtrix_utils.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/mrtrix_utils.h:20, from core/formats/mrtrix_utils.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/mrtrix_utils.h:20, from core/formats/mrtrix_utils.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/mrtrix_utils.h:20, from core/formats/mrtrix_utils.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 51/400) [CC] tmp/core/math/SH.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/header.cpp -o tmp/core/header.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/header.h:23, from core/header.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/header.h:23, from core/header.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/header.h:23, from core/header.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/header.h:23, from core/header.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 52/400) [CC] tmp/core/thread.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/SH.cpp -o tmp/core/math/SH.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from core/math/SH.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from core/math/SH.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from core/math/SH.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from core/math/SH.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 53/400) [CC] tmp/core/formats/nifti1_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/variable_scaling.cpp -o tmp/core/image_io/variable_scaling.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/variable_scaling.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/variable_scaling.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/variable_scaling.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/variable_scaling.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 54/400) [CC] tmp/core/adapter/reslice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/thread.cpp -o tmp/core/thread.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/thread.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/thread.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/thread.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/thread.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 55/400) [CC] tmp/core/formats/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti1_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti1_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti1_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti1_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 56/400) [CC] tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/adapter/reslice.cpp -o tmp/core/adapter/reslice.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/adapter/reslice.h:22, from core/adapter/reslice.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/adapter/reslice.h:22, from core/adapter/reslice.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/adapter/reslice.h:22, from core/adapter/reslice.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/adapter/reslice.h:22, from core/adapter/reslice.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 57/400) [CC] tmp/core/file/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/png.cpp -o tmp/core/formats/png.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/list.h:20, from core/formats/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/list.h:20, from core/formats/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/list.h:20, from core/formats/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/list.h:20, from core/formats/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 58/400) [CC] tmp/core/progressbar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/mgh.cpp -o tmp/core/file/mgh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/mgh.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/mgh.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/mgh.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/mgh.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 59/400) [CC] tmp/core/formats/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/progressbar.cpp -o tmp/core/progressbar.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/progressbar.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/progressbar.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/progressbar.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/progressbar.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 60/400) [CC] tmp/core/math/betainc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/betainc.cpp -o tmp/core/math/betainc.o: In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/SpecialFunctions:15, from ./core/math/betainc.h:21, from core/math/betainc.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172, from /usr/include/eigen3/unsupported/Eigen/SpecialFunctions:15, from ./core/math/betainc.h:21, from core/math/betainc.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/SpecialFunctions:15, from ./core/math/betainc.h:21, from core/math/betainc.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172, from /usr/include/eigen3/unsupported/Eigen/SpecialFunctions:15, from ./core/math/betainc.h:21, from core/math/betainc.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 61/400) [CC] tmp/core/file/name_parser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/tiff.cpp -o tmp/core/formats/tiff.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 62/400) [CC] tmp/core/file/dicom/study.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/study.cpp -o tmp/core/file/dicom/study.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from ./core/file/dicom/study.h:21, from ./core/file/dicom/patient.h:21, from core/file/dicom/study.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from ./core/file/dicom/study.h:21, from ./core/file/dicom/patient.h:21, from core/file/dicom/study.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from ./core/file/dicom/study.h:21, from ./core/file/dicom/patient.h:21, from core/file/dicom/study.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from ./core/file/dicom/study.h:21, from ./core/file/dicom/patient.h:21, from core/file/dicom/study.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 63/400) [CC] tmp/core/formats/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/name_parser.cpp -o tmp/core/file/name_parser.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/name_parser.h:22, from core/file/name_parser.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/name_parser.h:22, from core/file/name_parser.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/name_parser.h:22, from core/file/name_parser.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/name_parser.h:22, from core/file/name_parser.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 64/400) [CC] tmp/core/file/ofstream.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/list.cpp -o tmp/core/formats/list.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/list.h:20, from core/formats/list.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/list.h:20, from core/formats/list.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/list.h:20, from core/formats/list.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/list.h:20, from core/formats/list.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 65/400) [CC] tmp/core/formats/mgz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpinvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpinvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpinvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpinvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 66/400) [CC] tmp/core/filter/connected_components.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/ofstream.cpp -o tmp/core/file/ofstream.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from core/file/ofstream.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from core/file/ofstream.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from core/file/ofstream.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from core/file/ofstream.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 67/400) [CC] tmp/core/formats/ram.o ( 68/400) [CC] tmp/core/math/stats/fwe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/stats/fwe.cpp -o tmp/core/math/stats/fwe.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/math/stats/typedefs.h:20, from ./core/math/stats/fwe.h:21, from core/math/stats/fwe.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/math/stats/typedefs.h:20, from ./core/math/stats/fwe.h:21, from core/math/stats/fwe.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/math/stats/typedefs.h:20, from ./core/math/stats/fwe.h:21, from core/math/stats/fwe.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/math/stats/typedefs.h:20, from ./core/math/stats/fwe.h:21, from core/math/stats/fwe.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 69/400) [CC] tmp/core/exception.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/exception.cpp -o tmp/core/exception.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/exception.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/exception.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/exception.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/exception.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 70/400) [CC] tmp/core/formats/mrtrix_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/filter/connected_components.cpp -o tmp/core/filter/connected_components.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/filter/connected_components.h:21, from core/filter/connected_components.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/filter/connected_components.h:21, from core/filter/connected_components.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/filter/connected_components.h:21, from core/filter/connected_components.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/filter/connected_components.h:21, from core/filter/connected_components.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 71/400) [CC] tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mgz.cpp -o tmp/core/formats/mgz.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/mgz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/mgz.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/mgz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/mgz.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 72/400) [CC] tmp/core/math/stats/import.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/mrtrix_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/mrtrix_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/mrtrix_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/mrtrix_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 73/400) [CC] tmp/core/algo/histogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/stats/import.cpp -o tmp/core/math/stats/import.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/math/stats/import.h:24, from core/math/stats/import.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/math/stats/import.h:24, from core/math/stats/import.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/math/stats/import.h:24, from core/math/stats/import.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/math/stats/import.h:24, from core/math/stats/import.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 74/400) [CC] tmp/core/image_io/fetch_store.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/algo/histogram.cpp -o tmp/core/algo/histogram.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/datatype.h:20, from ./core/image_helpers.h:20, from ./core/algo/histogram.h:22, from core/algo/histogram.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/datatype.h:20, from ./core/image_helpers.h:20, from ./core/algo/histogram.h:22, from core/algo/histogram.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/datatype.h:20, from ./core/image_helpers.h:20, from ./core/algo/histogram.h:22, from core/algo/histogram.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/datatype.h:20, from ./core/image_helpers.h:20, from ./core/algo/histogram.h:22, from core/algo/histogram.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 75/400) [CC] tmp/core/formats/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from ./core/image_io/fetch_store.h:20, from core/image_io/fetch_store.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from ./core/image_io/fetch_store.h:20, from core/image_io/fetch_store.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from ./core/image_io/fetch_store.h:20, from core/image_io/fetch_store.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from ./core/image_io/fetch_store.h:20, from core/image_io/fetch_store.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 76/400) [CC] tmp/core/file/dicom/element.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/pipe.cpp -o tmp/core/formats/pipe.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/pipe.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/pipe.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/pipe.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/pipe.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 77/400) [CC] tmp/core/formats/mri.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/key_value.h:21, from ./core/file/json_utils.h:21, from core/file/json_utils.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/key_value.h:21, from ./core/file/json_utils.h:21, from core/file/json_utils.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/key_value.h:21, from ./core/file/json_utils.h:21, from core/file/json_utils.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/key_value.h:21, from ./core/file/json_utils.h:21, from core/file/json_utils.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 78/400) [CC] tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/element.cpp -o tmp/core/file/dicom/element.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/file/dicom/element.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/file/dicom/element.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/file/dicom/element.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/file/dicom/element.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 79/400) [CC] tmp/core/metadata/phase_encoding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mri.cpp -o tmp/core/formats/mri.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/mri.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/mri.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/mri.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/mri.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 80/400) [CC] tmp/core/image_io/gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from ./core/file/dicom/element.h:23, from core/file/dicom/dict.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from ./core/file/dicom/element.h:23, from core/file/dicom/dict.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from ./core/file/dicom/element.h:23, from core/file/dicom/dict.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from ./core/file/dicom/element.h:23, from core/file/dicom/dict.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 81/400) [CC] tmp/core/dwi/shells.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/gz.cpp -o tmp/core/image_io/gz.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/gz.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/gz.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/gz.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/gz.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 82/400) [CC] tmp/core/math/average_space.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/stats/glm.cpp -o tmp/core/math/stats/glm.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/glm.h:20, from core/math/stats/glm.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/glm.h:20, from core/math/stats/glm.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/glm.h:20, from core/math/stats/glm.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/glm.h:20, from core/math/stats/glm.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 83/400) [CC] tmp/core/image_io/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/pipe.cpp -o tmp/core/image_io/pipe.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/pipe.cpp:21: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/pipe.cpp:21: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/pipe.cpp:21: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/pipe.cpp:21: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 84/400) [CC] tmp/core/image_io/sparse.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/metadata/phase_encoding.cpp -o tmp/core/metadata/phase_encoding.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from ./core/metadata/phase_encoding.h:20, from core/metadata/phase_encoding.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from ./core/metadata/phase_encoding.h:20, from core/metadata/phase_encoding.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from ./core/metadata/phase_encoding.h:20, from core/metadata/phase_encoding.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from ./core/metadata/phase_encoding.h:20, from core/metadata/phase_encoding.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 85/400) [CC] tmp/core/formats/mrtrix_sparse_legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/sparse.cpp -o tmp/core/image_io/sparse.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/sparse.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/sparse.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/sparse.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/sparse.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 86/400) [CC] tmp/cmd/warpinit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/dwi/shells.cpp -o tmp/core/dwi/shells.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/dwi/shells.h:24, from core/dwi/shells.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/dwi/shells.h:24, from core/dwi/shells.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/dwi/shells.h:24, from core/dwi/shells.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/dwi/shells.h:24, from core/dwi/shells.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 87/400) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mrtrix_sparse_legacy.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mrtrix_sparse_legacy.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mrtrix_sparse_legacy.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mrtrix_sparse_legacy.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 88/400) [CC] tmp/cmd/warpconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/warpinit.cpp -o tmp/cmd/warpinit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpinit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpinit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpinit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpinit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 89/400) [CC] tmp/cmd/warp2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 90/400) [CC] tmp/src/connectome/lut.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/connectome/lut.cpp -o tmp/src/connectome/lut.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/connectome/lut.h:23, from src/connectome/lut.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/connectome/lut.h:23, from src/connectome/lut.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/connectome/lut.h:23, from src/connectome/lut.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/connectome/lut.h:23, from src/connectome/lut.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 91/400) [CC] tmp/src/surface/mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 92/400) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/mesh.cpp -o tmp/src/surface/mesh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/mesh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/mesh.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/mesh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/mesh.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 93/400) [CC] tmp/src/surface/scalar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/warp2metric.cpp -o tmp/cmd/warp2metric.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warp2metric.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warp2metric.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warp2metric.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warp2metric.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 94/400) [CC] tmp/cmd/voxel2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from src/surface/freesurfer.h:23, from src/surface/freesurfer.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from src/surface/freesurfer.h:23, from src/surface/freesurfer.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from src/surface/freesurfer.h:23, from src/surface/freesurfer.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from src/surface/freesurfer.h:23, from src/surface/freesurfer.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 95/400) [CC] tmp/src/surface/polygon.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/scalar.cpp -o tmp/src/surface/scalar.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/scalar.h:21, from src/surface/scalar.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/scalar.h:21, from src/surface/scalar.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/scalar.h:21, from src/surface/scalar.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/scalar.h:21, from src/surface/scalar.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 96/400) [CC] tmp/src/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/polygon.cpp -o tmp/src/surface/polygon.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from src/surface/polygon.h:25, from src/surface/polygon.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from src/surface/polygon.h:25, from src/surface/polygon.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from src/surface/polygon.h:25, from src/surface/polygon.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from src/surface/polygon.h:25, from src/surface/polygon.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 97/400) [CC] tmp/cmd/voxel2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from src/connectome/connectome.h:21, from src/connectome/connectome.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from src/connectome/connectome.h:21, from src/connectome/connectome.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from src/connectome/connectome.h:21, from src/connectome/connectome.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from src/connectome/connectome.h:21, from src/connectome/connectome.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 98/400) [CC] tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/voxel2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/voxel2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/voxel2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/voxel2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics ( 99/400) [CC] tmp/cmd/vectorstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/voxel2mesh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/voxel2mesh.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/voxel2mesh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/voxel2mesh.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (100/400) [CC] tmp/src/dwi/tractography/properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/stats/permtest.cpp -o tmp/src/stats/permtest.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/stats/permtest.h:23, from src/stats/permtest.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/stats/permtest.h:23, from src/stats/permtest.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/stats/permtest.h:23, from src/stats/permtest.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/stats/permtest.h:23, from src/stats/permtest.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (101/400) [CC] tmp/src/dwi/tractography/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/properties.cpp -o tmp/src/dwi/tractography/properties.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/properties.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/properties.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/properties.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/properties.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (102/400) [CC] tmp/src/dwi/tractography/seeding/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/seeding/list.cpp -o tmp/src/dwi/tractography/seeding/list.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/seeding/list.h:21, from src/dwi/tractography/seeding/list.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/seeding/list.h:21, from src/dwi/tractography/seeding/list.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/seeding/list.h:21, from src/dwi/tractography/seeding/list.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/seeding/list.h:21, from src/dwi/tractography/seeding/list.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (103/400) [CC] tmp/cmd/tsfvalidate.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/vectorstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/vectorstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/vectorstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/vectorstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (104/400) [CC] tmp/src/dwi/tractography/rng.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/math/rng.h:27, from src/dwi/tractography/rng.h:20, from src/dwi/tractography/rng.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/math/rng.h:27, from src/dwi/tractography/rng.h:20, from src/dwi/tractography/rng.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/math/rng.h:27, from src/dwi/tractography/rng.h:20, from src/dwi/tractography/rng.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/math/rng.h:27, from src/dwi/tractography/rng.h:20, from src/dwi/tractography/rng.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (105/400) [CC] tmp/src/dwi/tractography/file_base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/roi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/roi.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/roi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/roi.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (106/400) [CC] tmp/cmd/tsfthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/file_base.h:24, from src/dwi/tractography/file_base.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/file_base.h:24, from src/dwi/tractography/file_base.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/file_base.h:24, from src/dwi/tractography/file_base.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/file_base.h:24, from src/dwi/tractography/file_base.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (107/400) [CC] tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfvalidate.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfvalidate.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfvalidate.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfvalidate.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (108/400) [CC] tmp/cmd/tsfmult.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfthreshold.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfthreshold.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfthreshold.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfthreshold.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (109/400) [CC] tmp/cmd/tsfinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfsmooth.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfsmooth.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfsmooth.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfsmooth.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (110/400) [CC] tmp/cmd/tsfdivide.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfmult.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfmult.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfmult.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfmult.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (111/400) [CC] tmp/cmd/transformconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/average_space.cpp -o tmp/core/math/average_space.o: In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/MatrixFunctions:17, from ./core/math/average_space.h:20, from core/math/average_space.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172, from /usr/include/eigen3/unsupported/Eigen/MatrixFunctions:17, from ./core/math/average_space.h:20, from core/math/average_space.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/MatrixFunctions:17, from ./core/math/average_space.h:20, from core/math/average_space.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172, from /usr/include/eigen3/unsupported/Eigen/MatrixFunctions:17, from ./core/math/average_space.h:20, from core/math/average_space.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (112/400) [LB] bin/warpinvert g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfinfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfinfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfinfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfinfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (113/400) [LB] bin/warpinit (114/400) [LB] bin/warpcorrect (115/400) [LB] bin/warpconvert g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfdivide.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfdivide.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfdivide.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfdivide.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (116/400) [LB] bin/warp2metric (117/400) [LB] bin/voxel2mesh g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o: In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/MatrixFunctions:17, from cmd/transformconvert.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172, from /usr/include/eigen3/unsupported/Eigen/MatrixFunctions:17, from cmd/transformconvert.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/MatrixFunctions:17, from cmd/transformconvert.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172, from /usr/include/eigen3/unsupported/Eigen/MatrixFunctions:17, from cmd/transformconvert.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (118/400) [LB] bin/voxel2fixel (119/400) [LB] bin/vectorstats (120/400) [LB] bin/tsfvalidate (121/400) [LB] bin/tsfthreshold (122/400) [LB] bin/tsfsmooth (123/400) [LB] bin/tsfmult (124/400) [LB] bin/tsfinfo (125/400) [LB] bin/tsfdivide (126/400) [LB] bin/transformconvert (127/400) [CC] tmp/cmd/transformcompose.o (128/400) [CC] tmp/cmd/transformcalc.o (129/400) [CC] tmp/cmd/tensor2metric.o (130/400) [CC] tmp/cmd/tcktransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/transformcompose.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/transformcompose.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/transformcompose.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/transformcompose.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (131/400) [LB] bin/transformcompose (132/400) [CC] tmp/cmd/tckstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcktransform.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcktransform.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcktransform.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcktransform.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (133/400) [LB] bin/tcktransform g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tensor2metric.cpp -o tmp/cmd/tensor2metric.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tensor2metric.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tensor2metric.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tensor2metric.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tensor2metric.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (134/400) [LB] bin/tensor2metric (135/400) [CC] tmp/src/dwi/tractography/weights.o (136/400) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from src/dwi/tractography/weights.h:20, from src/dwi/tractography/weights.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from src/dwi/tractography/weights.h:20, from src/dwi/tractography/weights.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from src/dwi/tractography/weights.h:20, from src/dwi/tractography/weights.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from src/dwi/tractography/weights.h:20, from src/dwi/tractography/weights.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (137/400) [CC] tmp/src/dwi/tractography/resampling/arc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckstats.cpp -o tmp/cmd/tckstats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (138/400) [LB] bin/tckstats g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/SIFT2/line_search.h:21, from src/dwi/tractography/SIFT2/line_search.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/SIFT2/line_search.h:21, from src/dwi/tractography/SIFT2/line_search.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/SIFT2/line_search.h:21, from src/dwi/tractography/SIFT2/line_search.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/SIFT2/line_search.h:21, from src/dwi/tractography/SIFT2/line_search.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (139/400) [CC] tmp/src/dwi/tractography/mapping/mapping.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/arc.h:21, from src/dwi/tractography/resampling/arc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/arc.h:21, from src/dwi/tractography/resampling/arc.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/arc.h:21, from src/dwi/tractography/resampling/arc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/arc.h:21, from src/dwi/tractography/resampling/arc.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (140/400) [CC] tmp/src/dwi/fmls.o (141/400) [CC] tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/directions/set.h:23, from src/dwi/directions/set.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/directions/set.h:23, from src/dwi/directions/set.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/directions/set.h:23, from src/dwi/directions/set.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/directions/set.h:23, from src/dwi/directions/set.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (142/400) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/mapping.cpp -o tmp/src/dwi/tractography/mapping/mapping.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/mapping/mapping.h:20, from src/dwi/tractography/mapping/mapping.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/mapping/mapping.h:20, from src/dwi/tractography/mapping/mapping.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/mapping/mapping.h:20, from src/dwi/tractography/mapping/mapping.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/mapping/mapping.h:20, from src/dwi/tractography/mapping/mapping.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (143/400) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/track_index_range.cpp -o tmp/src/dwi/tractography/SIFT/track_index_range.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/SIFT/track_index_range.h:20, from src/dwi/tractography/SIFT/track_index_range.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/SIFT/track_index_range.h:20, from src/dwi/tractography/SIFT/track_index_range.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/SIFT/track_index_range.h:20, from src/dwi/tractography/SIFT/track_index_range.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/SIFT/track_index_range.h:20, from src/dwi/tractography/SIFT/track_index_range.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (144/400) [CC] tmp/src/dwi/tractography/resampling/upsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/math/golden_section_search.h:22, from src/dwi/tractography/SIFT2/coeff_optimiser.h:21, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/math/golden_section_search.h:22, from src/dwi/tractography/SIFT2/coeff_optimiser.h:21, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/math/golden_section_search.h:22, from src/dwi/tractography/SIFT2/coeff_optimiser.h:21, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/math/golden_section_search.h:22, from src/dwi/tractography/SIFT2/coeff_optimiser.h:21, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (145/400) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/upsampler.h:21, from src/dwi/tractography/resampling/upsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/upsampler.h:21, from src/dwi/tractography/resampling/upsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/upsampler.h:21, from src/dwi/tractography/resampling/upsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/upsampler.h:21, from src/dwi/tractography/resampling/upsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (146/400) [CC] tmp/src/dwi/tractography/mapping/voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/SIFT2/fixel_updater.h:21, from src/dwi/tractography/SIFT2/fixel_updater.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/SIFT2/fixel_updater.h:21, from src/dwi/tractography/SIFT2/fixel_updater.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/SIFT2/fixel_updater.h:21, from src/dwi/tractography/SIFT2/fixel_updater.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/SIFT2/fixel_updater.h:21, from src/dwi/tractography/SIFT2/fixel_updater.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (147/400) [CC] tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/voxel.h:24, from src/dwi/tractography/mapping/voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/voxel.h:24, from src/dwi/tractography/mapping/voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/voxel.h:24, from src/dwi/tractography/mapping/voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/voxel.h:24, from src/dwi/tractography/mapping/voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (148/400) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/SIFT/sift.h:20, from src/dwi/tractography/SIFT/sift.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/SIFT/sift.h:20, from src/dwi/tractography/SIFT/sift.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/SIFT/sift.h:20, from src/dwi/tractography/SIFT/sift.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/SIFT/sift.h:20, from src/dwi/tractography/SIFT/sift.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (149/400) [CC] tmp/src/dwi/directions/predefined.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/directions/predefined.h:21, from src/dwi/directions/predefined.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/directions/predefined.h:21, from src/dwi/directions/predefined.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/directions/predefined.h:21, from src/dwi/directions/predefined.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/directions/predefined.h:21, from src/dwi/directions/predefined.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (150/400) [CC] tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from src/dwi/fmls.h:23, from src/dwi/fmls.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from src/dwi/fmls.h:23, from src/dwi/fmls.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from src/dwi/fmls.h:23, from src/dwi/fmls.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from src/dwi/fmls.h:23, from src/dwi/fmls.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (151/400) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/streamline_stats.cpp -o tmp/src/dwi/tractography/SIFT2/streamline_stats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from src/dwi/tractography/SIFT2/streamline_stats.h:24, from src/dwi/tractography/SIFT2/streamline_stats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from src/dwi/tractography/SIFT2/streamline_stats.h:24, from src/dwi/tractography/SIFT2/streamline_stats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from src/dwi/tractography/SIFT2/streamline_stats.h:24, from src/dwi/tractography/SIFT2/streamline_stats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from src/dwi/tractography/SIFT2/streamline_stats.h:24, from src/dwi/tractography/SIFT2/streamline_stats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (152/400) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o (153/400) [CC] tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/SIFT/track_index_range.h:20, from src/dwi/tractography/SIFT2/reg_calculator.h:21, from src/dwi/tractography/SIFT2/reg_calculator.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/SIFT/track_index_range.h:20, from src/dwi/tractography/SIFT2/reg_calculator.h:21, from src/dwi/tractography/SIFT2/reg_calculator.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/SIFT/track_index_range.h:20, from src/dwi/tractography/SIFT2/reg_calculator.h:21, from src/dwi/tractography/SIFT2/reg_calculator.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/SIFT/track_index_range.h:20, from src/dwi/tractography/SIFT2/reg_calculator.h:21, from src/dwi/tractography/SIFT2/reg_calculator.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (154/400) [CC] tmp/src/dwi/tractography/resampling/downsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/endpoints.h:21, from src/dwi/tractography/resampling/endpoints.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/endpoints.h:21, from src/dwi/tractography/resampling/endpoints.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/endpoints.h:21, from src/dwi/tractography/resampling/endpoints.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/endpoints.h:21, from src/dwi/tractography/resampling/endpoints.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (155/400) [CC] tmp/src/dwi/tractography/resampling/resampling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/tracking/types.h:21, from src/dwi/tractography/tracking/generated_track.h:21, from src/dwi/tractography/resampling/downsampler.h:21, from src/dwi/tractography/resampling/downsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/tracking/types.h:21, from src/dwi/tractography/tracking/generated_track.h:21, from src/dwi/tractography/resampling/downsampler.h:21, from src/dwi/tractography/resampling/downsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/tracking/types.h:21, from src/dwi/tractography/tracking/generated_track.h:21, from src/dwi/tractography/resampling/downsampler.h:21, from src/dwi/tractography/resampling/downsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/tracking/types.h:21, from src/dwi/tractography/tracking/generated_track.h:21, from src/dwi/tractography/resampling/downsampler.h:21, from src/dwi/tractography/resampling/downsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (156/400) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/fixed_step_size.h:21, from src/dwi/tractography/resampling/fixed_step_size.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/fixed_step_size.h:21, from src/dwi/tractography/resampling/fixed_step_size.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/fixed_step_size.h:21, from src/dwi/tractography/resampling/fixed_step_size.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/fixed_step_size.h:21, from src/dwi/tractography/resampling/fixed_step_size.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (157/400) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/resampling.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/resampling.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/resampling.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/resampling.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (158/400) [CC] tmp/src/dwi/directions/mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/misc/bitset.h:24, from src/dwi/directions/mask.h:23, from src/dwi/directions/mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/misc/bitset.h:24, from src/dwi/directions/mask.h:23, from src/dwi/directions/mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/misc/bitset.h:24, from src/dwi/directions/mask.h:23, from src/dwi/directions/mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/misc/bitset.h:24, from src/dwi/directions/mask.h:23, from src/dwi/directions/mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (159/400) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/fixel_map.h:21, from src/dwi/tractography/mapping/fixel_td_map.h:21, from src/dwi/tractography/mapping/fixel_td_map.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/fixel_map.h:21, from src/dwi/tractography/mapping/fixel_td_map.h:21, from src/dwi/tractography/mapping/fixel_td_map.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/fixel_map.h:21, from src/dwi/tractography/mapping/fixel_td_map.h:21, from src/dwi/tractography/mapping/fixel_td_map.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/fixel_map.h:21, from src/dwi/tractography/mapping/fixel_td_map.h:21, from src/dwi/tractography/mapping/fixel_td_map.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (160/400) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from cmd/transformcalc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from cmd/transformcalc.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from cmd/transformcalc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from cmd/transformcalc.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (161/400) [LB] bin/transformcalc g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/mapper.h:21, from src/dwi/tractography/mapping/mapper.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/mapper.h:21, from src/dwi/tractography/mapping/mapper.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/mapper.h:21, from src/dwi/tractography/mapping/mapper.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/mapper.h:21, from src/dwi/tractography/mapping/mapper.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (162/400) [CC] tmp/cmd/tcksift2.o (163/400) [CC] tmp/src/dwi/tractography/ACT/act.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/ACT/act.h:20, from src/dwi/tractography/ACT/act.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/ACT/act.h:20, from src/dwi/tractography/ACT/act.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/ACT/act.h:20, from src/dwi/tractography/ACT/act.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/ACT/act.h:20, from src/dwi/tractography/ACT/act.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (164/400) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from src/dwi/tractography/SIFT/proc_mask.h:20, from src/dwi/tractography/SIFT/proc_mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from src/dwi/tractography/SIFT/proc_mask.h:20, from src/dwi/tractography/SIFT/proc_mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from src/dwi/tractography/SIFT/proc_mask.h:20, from src/dwi/tractography/SIFT/proc_mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from src/dwi/tractography/SIFT/proc_mask.h:20, from src/dwi/tractography/SIFT/proc_mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (165/400) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/fixed_num_points.h:21, from src/dwi/tractography/resampling/fixed_num_points.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/fixed_num_points.h:21, from src/dwi/tractography/resampling/fixed_num_points.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/fixed_num_points.h:21, from src/dwi/tractography/resampling/fixed_num_points.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/fixed_num_points.h:21, from src/dwi/tractography/resampling/fixed_num_points.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (166/400) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/track_contribution.cpp -o tmp/src/dwi/tractography/SIFT/track_contribution.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT/track_contribution.h:23, from src/dwi/tractography/SIFT/track_contribution.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT/track_contribution.h:23, from src/dwi/tractography/SIFT/track_contribution.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT/track_contribution.h:23, from src/dwi/tractography/SIFT/track_contribution.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT/track_contribution.h:23, from src/dwi/tractography/SIFT/track_contribution.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (167/400) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (168/400) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/mapper_plugins.h:21, from src/dwi/tractography/mapping/mapper_plugins.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/mapper_plugins.h:21, from src/dwi/tractography/mapping/mapper_plugins.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/mapper_plugins.h:21, from src/dwi/tractography/mapping/mapper_plugins.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/mapper_plugins.h:21, from src/dwi/tractography/mapping/mapper_plugins.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (169/400) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/thread_queue.h:23, from src/dwi/tractography/SIFT/types.h:21, from src/dwi/tractography/SIFT/gradient_sort.h:23, from src/dwi/tractography/SIFT/gradient_sort.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/thread_queue.h:23, from src/dwi/tractography/SIFT/types.h:21, from src/dwi/tractography/SIFT/gradient_sort.h:23, from src/dwi/tractography/SIFT/gradient_sort.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/thread_queue.h:23, from src/dwi/tractography/SIFT/types.h:21, from src/dwi/tractography/SIFT/gradient_sort.h:23, from src/dwi/tractography/SIFT/gradient_sort.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/thread_queue.h:23, from src/dwi/tractography/SIFT/types.h:21, from src/dwi/tractography/SIFT/gradient_sort.h:23, from src/dwi/tractography/SIFT/gradient_sort.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (170/400) [CC] tmp/cmd/tcksample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (171/400) [LB] bin/tcksift2 (172/400) [CC] tmp/cmd/tckresample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/SIFT/sifter.h:22, from src/dwi/tractography/SIFT/sifter.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/SIFT/sifter.h:22, from src/dwi/tractography/SIFT/sifter.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/SIFT/sifter.h:22, from src/dwi/tractography/SIFT/sifter.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/SIFT/sifter.h:22, from src/dwi/tractography/SIFT/sifter.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (173/400) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/gaussian/mapper.h:21, from src/dwi/tractography/mapping/gaussian/mapper.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/gaussian/mapper.h:21, from src/dwi/tractography/mapping/gaussian/mapper.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/gaussian/mapper.h:21, from src/dwi/tractography/mapping/gaussian/mapper.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/gaussian/mapper.h:21, from src/dwi/tractography/mapping/gaussian/mapper.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (174/400) [CC] tmp/src/dwi/tractography/mapping/writer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/writer.cpp -o tmp/src/dwi/tractography/mapping/writer.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from src/dwi/tractography/mapping/writer.h:21, from src/dwi/tractography/mapping/writer.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from src/dwi/tractography/mapping/writer.h:21, from src/dwi/tractography/mapping/writer.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from src/dwi/tractography/mapping/writer.h:21, from src/dwi/tractography/mapping/writer.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from src/dwi/tractography/mapping/writer.h:21, from src/dwi/tractography/mapping/writer.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (175/400) [CC] tmp/cmd/tckmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckresample.cpp -o tmp/cmd/tckresample.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckresample.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckresample.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckresample.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckresample.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (176/400) [LB] bin/tckresample (177/400) [CC] tmp/cmd/tckinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tcksample.cpp -o tmp/cmd/tcksample.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksample.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksample.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksample.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksample.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (178/400) [LB] bin/tcksample g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckinfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckinfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckinfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckinfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (179/400) [LB] bin/tckinfo (180/400) [CC] tmp/src/dwi/tractography/GT/mhsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (181/400) [LB] bin/tcksift (182/400) [CC] tmp/src/dwi/tractography/GT/particle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/GT/particle.h:20, from src/dwi/tractography/GT/particle.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/GT/particle.h:20, from src/dwi/tractography/GT/particle.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/GT/particle.h:20, from src/dwi/tractography/GT/particle.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/GT/particle.h:20, from src/dwi/tractography/GT/particle.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (183/400) [CC] tmp/cmd/tckglobal.o (184/400) [CC] tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/GT/mhsampler.h:20, from src/dwi/tractography/GT/mhsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/GT/mhsampler.h:20, from src/dwi/tractography/GT/mhsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/GT/mhsampler.h:20, from src/dwi/tractography/GT/mhsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/GT/mhsampler.h:20, from src/dwi/tractography/GT/mhsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (185/400) [CC] tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from src/dwi/tractography/GT/gt.h:27, from src/dwi/tractography/GT/gt.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from src/dwi/tractography/GT/gt.h:27, from src/dwi/tractography/GT/gt.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from src/dwi/tractography/GT/gt.h:27, from src/dwi/tractography/GT/gt.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from src/dwi/tractography/GT/gt.h:27, from src/dwi/tractography/GT/gt.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (186/400) [CC] tmp/src/dwi/tractography/GT/particlegrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/GT/particlegrid.h:23, from src/dwi/tractography/GT/particlegrid.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/GT/particlegrid.h:23, from src/dwi/tractography/GT/particlegrid.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/GT/particlegrid.h:23, from src/dwi/tractography/GT/particlegrid.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/GT/particlegrid.h:23, from src/dwi/tractography/GT/particlegrid.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (187/400) [CC] tmp/src/dwi/tractography/GT/internalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/GT/internalenergy.h:20, from src/dwi/tractography/GT/internalenergy.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/GT/internalenergy.h:20, from src/dwi/tractography/GT/internalenergy.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/GT/internalenergy.h:20, from src/dwi/tractography/GT/internalenergy.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/GT/internalenergy.h:20, from src/dwi/tractography/GT/internalenergy.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (188/400) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckglobal.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckglobal.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckglobal.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckglobal.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (189/400) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from src/dwi/tractography/tracking/write_kernel.h:24, from src/dwi/tractography/tracking/write_kernel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from src/dwi/tractography/tracking/write_kernel.h:24, from src/dwi/tractography/tracking/write_kernel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from src/dwi/tractography/tracking/write_kernel.h:24, from src/dwi/tractography/tracking/write_kernel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from src/dwi/tractography/tracking/write_kernel.h:24, from src/dwi/tractography/tracking/write_kernel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (190/400) [CC] tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/GT/externalenergy.h:20, from src/dwi/tractography/GT/externalenergy.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/GT/externalenergy.h:20, from src/dwi/tractography/GT/externalenergy.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/GT/externalenergy.h:20, from src/dwi/tractography/GT/externalenergy.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/GT/externalenergy.h:20, from src/dwi/tractography/GT/externalenergy.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (191/400) [LB] bin/tckglobal g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/tracking/tractography.h:20, from src/dwi/tractography/tracking/tractography.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/tracking/tractography.h:20, from src/dwi/tractography/tracking/tractography.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/tracking/tractography.h:20, from src/dwi/tractography/tracking/tractography.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/tracking/tractography.h:20, from src/dwi/tractography/tracking/tractography.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (192/400) [CC] tmp/src/dwi/tractography/tracking/early_exit.o (193/400) [CC] tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/transform.h:20, from src/dwi/tractography/seeding/dynamic.h:24, from src/dwi/tractography/seeding/dynamic.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/transform.h:20, from src/dwi/tractography/seeding/dynamic.h:24, from src/dwi/tractography/seeding/dynamic.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/transform.h:20, from src/dwi/tractography/seeding/dynamic.h:24, from src/dwi/tractography/seeding/dynamic.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/transform.h:20, from src/dwi/tractography/seeding/dynamic.h:24, from src/dwi/tractography/seeding/dynamic.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (194/400) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from src/dwi/tractography/tracking/early_exit.h:20, from src/dwi/tractography/tracking/early_exit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from src/dwi/tractography/tracking/early_exit.h:20, from src/dwi/tractography/tracking/early_exit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from src/dwi/tractography/tracking/early_exit.h:20, from src/dwi/tractography/tracking/early_exit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from src/dwi/tractography/tracking/early_exit.h:20, from src/dwi/tractography/tracking/early_exit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (195/400) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/tracking/types.h:21, from src/dwi/tractography/tracking/method.h:21, from src/dwi/tractography/tracking/method.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/tracking/types.h:21, from src/dwi/tractography/tracking/method.h:21, from src/dwi/tractography/tracking/method.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/tracking/types.h:21, from src/dwi/tractography/tracking/method.h:21, from src/dwi/tractography/tracking/method.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/tracking/types.h:21, from src/dwi/tractography/tracking/method.h:21, from src/dwi/tractography/tracking/method.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (196/400) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/seeding/gmwmi.cpp -o tmp/src/dwi/tractography/seeding/gmwmi.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/seeding/gmwmi.h:21, from src/dwi/tractography/seeding/gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/seeding/gmwmi.h:21, from src/dwi/tractography/seeding/gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/seeding/gmwmi.h:21, from src/dwi/tractography/seeding/gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/seeding/gmwmi.h:21, from src/dwi/tractography/seeding/gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (197/400) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/ACT/gmwmi.h:21, from src/dwi/tractography/ACT/gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/ACT/gmwmi.h:21, from src/dwi/tractography/ACT/gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/ACT/gmwmi.h:21, from src/dwi/tractography/ACT/gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/ACT/gmwmi.h:21, from src/dwi/tractography/ACT/gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (198/400) [CC] tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/algorithms/iFOD1.cpp -o tmp/src/dwi/tractography/algorithms/iFOD1.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from src/dwi/tractography/algorithms/iFOD1.h:20, from src/dwi/tractography/algorithms/iFOD1.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from src/dwi/tractography/algorithms/iFOD1.h:20, from src/dwi/tractography/algorithms/iFOD1.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from src/dwi/tractography/algorithms/iFOD1.h:20, from src/dwi/tractography/algorithms/iFOD1.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from src/dwi/tractography/algorithms/iFOD1.h:20, from src/dwi/tractography/algorithms/iFOD1.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (199/400) [CC] tmp/src/dwi/tractography/tracking/shared.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/roi.h:20, from src/dwi/tractography/seeding/basic.h:20, from src/dwi/tractography/seeding/basic.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/roi.h:20, from src/dwi/tractography/seeding/basic.h:20, from src/dwi/tractography/seeding/basic.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/roi.h:20, from src/dwi/tractography/seeding/basic.h:20, from src/dwi/tractography/seeding/basic.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/roi.h:20, from src/dwi/tractography/seeding/basic.h:20, from src/dwi/tractography/seeding/basic.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (200/400) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/tracking/shared.cpp -o tmp/src/dwi/tractography/tracking/shared.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/tracking/shared.h:22, from src/dwi/tractography/tracking/shared.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/tracking/shared.h:22, from src/dwi/tractography/tracking/shared.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/tracking/shared.h:22, from src/dwi/tractography/tracking/shared.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/tracking/shared.h:22, from src/dwi/tractography/tracking/shared.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (201/400) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckmap.cpp -o tmp/cmd/tckmap.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckmap.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckmap.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckmap.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckmap.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (202/400) [LB] bin/tckmap g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/algorithms/iFOD2.h:22, from src/dwi/tractography/algorithms/iFOD2.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/algorithms/iFOD2.h:22, from src/dwi/tractography/algorithms/iFOD2.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/algorithms/iFOD2.h:22, from src/dwi/tractography/algorithms/iFOD2.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/algorithms/iFOD2.h:22, from src/dwi/tractography/algorithms/iFOD2.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (203/400) [CC] tmp/cmd/tckedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/seeding/seeding.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/seeding/seeding.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/seeding/seeding.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/seeding/seeding.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (204/400) [CC] tmp/src/dwi/tractography/editing/receiver.o (205/400) [CC] tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/editing/receiver.h:24, from src/dwi/tractography/editing/receiver.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/editing/receiver.h:24, from src/dwi/tractography/editing/receiver.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/editing/receiver.h:24, from src/dwi/tractography/editing/receiver.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/editing/receiver.h:24, from src/dwi/tractography/editing/receiver.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (206/400) [CC] tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckedit.cpp -o tmp/cmd/tckedit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckedit.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckedit.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckedit.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckedit.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (207/400) [CC] tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/editing/worker.h:23, from src/dwi/tractography/editing/worker.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/editing/worker.h:23, from src/dwi/tractography/editing/worker.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/editing/worker.h:23, from src/dwi/tractography/editing/worker.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/editing/worker.h:23, from src/dwi/tractography/editing/worker.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (208/400) [CC] tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/editing/editing.h:20, from src/dwi/tractography/editing/editing.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/editing/editing.h:20, from src/dwi/tractography/editing/editing.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/editing/editing.h:20, from src/dwi/tractography/editing/editing.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/editing/editing.h:20, from src/dwi/tractography/editing/editing.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (209/400) [LB] bin/tckedit (210/400) [CC] tmp/cmd/tck2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (211/400) [LB] bin/tckconvert g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckdfc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckdfc.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckdfc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckdfc.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (212/400) [LB] bin/tckdfc g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tck2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tck2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tck2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tck2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (213/400) [LB] bin/tck2fixel (214/400) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o (215/400) [CC] tmp/src/dwi/tractography/connectome/matrix.o (216/400) [CC] tmp/cmd/tck2connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/connectome/matrix.h:22, from src/dwi/tractography/connectome/matrix.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/connectome/matrix.h:22, from src/dwi/tractography/connectome/matrix.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/connectome/matrix.h:22, from src/dwi/tractography/connectome/matrix.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/connectome/matrix.h:22, from src/dwi/tractography/connectome/matrix.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (217/400) [CC] tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/connectome/tck2nodes.h:21, from src/dwi/tractography/connectome/tck2nodes.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/connectome/tck2nodes.h:21, from src/dwi/tractography/connectome/tck2nodes.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/connectome/tck2nodes.h:21, from src/dwi/tractography/connectome/tck2nodes.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/connectome/tck2nodes.h:21, from src/dwi/tractography/connectome/tck2nodes.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (218/400) [CC] tmp/cmd/shconv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/connectome/connectome.h:22, from src/dwi/tractography/connectome/connectome.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/connectome/connectome.h:22, from src/dwi/tractography/connectome/connectome.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/connectome/connectome.h:22, from src/dwi/tractography/connectome/connectome.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/connectome/connectome.h:22, from src/dwi/tractography/connectome/connectome.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (219/400) [CC] tmp/cmd/shbasis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tck2connectome.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tck2connectome.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tck2connectome.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tck2connectome.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (220/400) [LB] bin/tck2connectome g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/shconv.cpp -o tmp/cmd/shconv.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/shconv.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/shconv.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/shconv.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/shconv.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (221/400) [LB] bin/shconv (222/400) [CC] tmp/cmd/sh2response.o (223/400) [CC] tmp/cmd/sh2power.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckgen.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckgen.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckgen.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckgen.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (224/400) [LB] bin/tckgen g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/sh2power.cpp -o tmp/cmd/sh2power.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2power.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2power.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2power.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2power.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (225/400) [LB] bin/sh2power (226/400) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/shbasis.cpp -o tmp/cmd/shbasis.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from cmd/shbasis.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from cmd/shbasis.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from cmd/shbasis.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from cmd/shbasis.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (227/400) [LB] bin/shbasis g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/sh2response.cpp -o tmp/cmd/sh2response.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2response.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2response.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2response.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2response.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (228/400) [LB] bin/sh2response (229/400) [CC] tmp/cmd/sh2amp.o (230/400) [CC] tmp/src/dwi/directions/file.o (231/400) [CC] tmp/cmd/peaks2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o: In file included from /usr/include/eigen3/Eigen/Core:214, from ./core/math/sphere.h:24, from src/dwi/directions/file.h:20, from src/dwi/directions/file.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from ./core/math/sphere.h:24, from src/dwi/directions/file.h:20, from src/dwi/directions/file.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from ./core/math/sphere.h:24, from src/dwi/directions/file.h:20, from src/dwi/directions/file.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from ./core/math/sphere.h:24, from src/dwi/directions/file.h:20, from src/dwi/directions/file.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (232/400) [CC] tmp/cmd/peaks2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2peaks.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2peaks.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2peaks.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2peaks.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (233/400) [LB] bin/sh2peaks g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/peaks2amp.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/peaks2amp.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/peaks2amp.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/peaks2amp.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (234/400) [LB] bin/peaks2amp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/peaks2fixel.cpp -o tmp/cmd/peaks2fixel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/peaks2fixel.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/peaks2fixel.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/peaks2fixel.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/peaks2fixel.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (235/400) [LB] bin/peaks2fixel (236/400) [CC] tmp/cmd/mtnormalise.o (237/400) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2amp.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2amp.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2amp.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2amp.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (238/400) [LB] bin/sh2amp (239/400) [CC] tmp/src/colourmap.o (240/400) [CC] tmp/src/registration/multi_contrast.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/colourmap.cpp -o tmp/src/colourmap.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/colourmap.h:21, from src/colourmap.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/colourmap.h:21, from src/colourmap.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/colourmap.h:21, from src/colourmap.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/colourmap.h:21, from src/colourmap.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (241/400) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from src/connectome/connectome.h:21, from src/surface/types.h:21, from src/surface/mesh_multi.h:21, from src/surface/mesh_multi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from src/connectome/connectome.h:21, from src/surface/types.h:21, from src/surface/mesh_multi.h:21, from src/surface/mesh_multi.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from src/connectome/connectome.h:21, from src/surface/types.h:21, from src/surface/mesh_multi.h:21, from src/surface/mesh_multi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from src/connectome/connectome.h:21, from src/surface/types.h:21, from src/surface/mesh_multi.h:21, from src/surface/mesh_multi.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (242/400) [CC] tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/multi_contrast.cpp -o tmp/src/registration/multi_contrast.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/multi_contrast.h:22, from src/registration/multi_contrast.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/multi_contrast.h:22, from src/registration/multi_contrast.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/multi_contrast.h:22, from src/registration/multi_contrast.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/multi_contrast.h:22, from src/registration/multi_contrast.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (243/400) [CC] tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrstats.cpp -o tmp/cmd/mrstats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrstats.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrstats.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrstats.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrstats.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (244/400) [LB] bin/mrstats g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mtnormalise.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mtnormalise.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mtnormalise.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mtnormalise.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (245/400) [LB] bin/mtnormalise g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrthreshold.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrthreshold.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrthreshold.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrthreshold.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (246/400) [LB] bin/mrthreshold (247/400) [CC] tmp/src/registration/transform/rigid.o (248/400) [CC] tmp/src/registration/transform/initialiser.o (249/400) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/transform/initialiser.h:20, from src/registration/transform/initialiser.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/transform/initialiser.h:20, from src/registration/transform/initialiser.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/transform/initialiser.h:20, from src/registration/transform/initialiser.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/transform/initialiser.h:20, from src/registration/transform/initialiser.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (250/400) [CC] tmp/src/registration/transform/convergence_check.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from src/registration/transform/convergence_check.h:21, from src/registration/transform/convergence_check.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from src/registration/transform/convergence_check.h:21, from src/registration/transform/convergence_check.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from src/registration/transform/convergence_check.h:21, from src/registration/transform/convergence_check.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from src/registration/transform/convergence_check.h:21, from src/registration/transform/convergence_check.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (251/400) [CC] tmp/src/registration/nonlinear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/nonlinear.h:20, from src/registration/nonlinear.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/nonlinear.h:20, from src/registration/nonlinear.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/nonlinear.h:20, from src/registration/nonlinear.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/nonlinear.h:20, from src/registration/nonlinear.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (252/400) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from src/registration/transform/initialiser_helpers.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from src/registration/transform/initialiser_helpers.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from src/registration/transform/initialiser_helpers.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from src/registration/transform/initialiser_helpers.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (253/400) [CC] tmp/src/registration/linear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/rigid.h:20, from src/registration/transform/rigid.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/rigid.h:20, from src/registration/transform/rigid.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/rigid.h:20, from src/registration/transform/rigid.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/rigid.h:20, from src/registration/transform/rigid.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (254/400) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/linear.cpp -o tmp/src/registration/linear.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/registration/linear.h:22, from src/registration/linear.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/registration/linear.h:22, from src/registration/linear.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/registration/linear.h:22, from src/registration/linear.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/registration/linear.h:22, from src/registration/linear.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (255/400) [CC] tmp/cmd/mrmetric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrmetric.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrmetric.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrmetric.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrmetric.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (256/400) [LB] bin/mrmetric (257/400) [CC] tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrmath.cpp -o tmp/cmd/mrmath.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrmath.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrmath.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrmath.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrmath.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (258/400) [LB] bin/mrmath (259/400) [CC] tmp/cmd/mrinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrinfo.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrinfo.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrinfo.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrinfo.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (260/400) [LB] bin/mrinfo (261/400) [CC] tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrhistogram.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrhistogram.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrhistogram.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrhistogram.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (262/400) [LB] bin/mrhistogram (263/400) [CC] tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrhistmatch.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrhistmatch.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrhistmatch.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrhistmatch.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (264/400) [LB] bin/mrhistmatch (265/400) [CC] tmp/cmd/mrgrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrgrid.cpp -o tmp/cmd/mrgrid.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrgrid.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrgrid.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrgrid.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrgrid.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (266/400) [LB] bin/mrgrid (267/400) [CC] tmp/cmd/mrfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrfilter.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrfilter.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrfilter.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrfilter.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (268/400) [LB] bin/mrfilter (269/400) [CC] tmp/cmd/mredit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mredit.cpp -o tmp/cmd/mredit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mredit.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mredit.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mredit.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mredit.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (270/400) [LB] bin/mredit (271/400) [CC] tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrdump.cpp -o tmp/cmd/mrdump.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrdump.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrdump.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrdump.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrdump.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (272/400) [LB] bin/mrdump (273/400) [CC] tmp/cmd/mrdegibbs.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o: In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/FFT:16, from cmd/mrdegibbs.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172, from /usr/include/eigen3/unsupported/Eigen/FFT:16, from cmd/mrdegibbs.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/FFT:16, from cmd/mrdegibbs.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172, from /usr/include/eigen3/unsupported/Eigen/FFT:16, from cmd/mrdegibbs.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (274/400) [LB] bin/mrdegibbs (275/400) [CC] tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/axes.h:24, from cmd/mrconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/axes.h:24, from cmd/mrconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/axes.h:24, from cmd/mrconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/axes.h:24, from cmd/mrconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (276/400) [LB] bin/mrconvert (277/400) [CC] tmp/cmd/mrcolour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrcolour.cpp -o tmp/cmd/mrcolour.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcolour.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcolour.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcolour.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcolour.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (278/400) [LB] bin/mrcolour (279/400) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/thread_queue.h:23, from src/stats/tfce.h:20, from src/stats/tfce.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/thread_queue.h:23, from src/stats/tfce.h:20, from src/stats/tfce.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/thread_queue.h:23, from src/stats/tfce.h:20, from src/stats/tfce.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/thread_queue.h:23, from src/stats/tfce.h:20, from src/stats/tfce.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (280/400) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/filter/connected_components.h:21, from src/stats/cluster.h:20, from src/stats/cluster.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/filter/connected_components.h:21, from src/stats/cluster.h:20, from src/stats/cluster.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/filter/connected_components.h:21, from src/stats/cluster.h:20, from src/stats/cluster.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/filter/connected_components.h:21, from src/stats/cluster.h:20, from src/stats/cluster.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (281/400) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/affine.h:20, from src/registration/transform/affine.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/affine.h:20, from src/registration/transform/affine.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/affine.h:20, from src/registration/transform/affine.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/affine.h:20, from src/registration/transform/affine.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (282/400) [CC] tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcheckerboardmask.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcheckerboardmask.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcheckerboardmask.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcheckerboardmask.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (283/400) [LB] bin/mrcheckerboardmask (284/400) [CC] tmp/cmd/mrcentroid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrclusterstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrclusterstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrclusterstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrclusterstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (285/400) [LB] bin/mrclusterstats (286/400) [CC] tmp/cmd/mrcat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrcentroid.cpp -o tmp/cmd/mrcentroid.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcentroid.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcentroid.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcentroid.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcentroid.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (287/400) [LB] bin/mrcentroid (288/400) [CC] tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrcat.cpp -o tmp/cmd/mrcat.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcat.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcat.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcat.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcat.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (289/400) [LB] bin/mrcat (290/400) [CC] tmp/cmd/mraverageheader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcalc.cpp:182: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcalc.cpp:182: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcalc.cpp:182: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcalc.cpp:182: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (291/400) [LB] bin/mrcalc (292/400) [CC] tmp/src/surface/filter/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/surface/filter/base.h:20, from src/surface/filter/base.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/surface/filter/base.h:20, from src/surface/filter/base.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/surface/filter/base.h:20, from src/surface/filter/base.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/surface/filter/base.h:20, from src/surface/filter/base.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (293/400) [CC] tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/filter/smooth.h:20, from src/surface/filter/smooth.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/filter/smooth.h:20, from src/surface/filter/smooth.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/filter/smooth.h:20, from src/surface/filter/smooth.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/filter/smooth.h:20, from src/surface/filter/smooth.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (294/400) [CC] tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/meshfilter.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/meshfilter.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/meshfilter.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/meshfilter.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (295/400) [LB] bin/meshfilter (296/400) [CC] tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mraverageheader.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mraverageheader.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mraverageheader.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mraverageheader.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (297/400) [LB] bin/mraverageheader g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/filter/vertex_transform.h:20, from src/surface/filter/vertex_transform.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/filter/vertex_transform.h:20, from src/surface/filter/vertex_transform.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/filter/vertex_transform.h:20, from src/surface/filter/vertex_transform.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/filter/vertex_transform.h:20, from src/surface/filter/vertex_transform.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (298/400) [CC] tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/meshconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/meshconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/meshconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/meshconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (299/400) [LB] bin/meshconvert (300/400) [CC] tmp/cmd/mesh2voxel.o (301/400) [CC] tmp/src/surface/algo/mesh2image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mesh2voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mesh2voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mesh2voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mesh2voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (302/400) [CC] tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/surface/algo/mesh2image.h:21, from src/surface/algo/mesh2image.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/surface/algo/mesh2image.h:21, from src/surface/algo/mesh2image.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/surface/algo/mesh2image.h:21, from src/surface/algo/mesh2image.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/surface/algo/mesh2image.h:21, from src/surface/algo/mesh2image.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (303/400) [LB] bin/mesh2voxel g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/maskfilter.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/maskfilter.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/maskfilter.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/maskfilter.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (304/400) [LB] bin/maskfilter (305/400) [CC] tmp/cmd/maskdump.o (306/400) [CC] tmp/cmd/labelstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/maskdump.cpp -o tmp/cmd/maskdump.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/maskdump.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/maskdump.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/maskdump.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/maskdump.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (307/400) [LB] bin/maskdump g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/labelstats.cpp -o tmp/cmd/labelstats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/labelstats.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/labelstats.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/labelstats.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/labelstats.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (308/400) [LB] bin/labelstats (309/400) [CC] tmp/cmd/labelconvert.o (310/400) [CC] tmp/cmd/label2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/labelconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/labelconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/labelconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/labelconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (311/400) [LB] bin/labelconvert (312/400) [CC] tmp/cmd/label2colour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/label2mesh.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/label2mesh.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/label2mesh.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/label2mesh.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (313/400) [LB] bin/label2mesh (314/400) [CC] tmp/cmd/fod2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/label2colour.cpp -o tmp/cmd/label2colour.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/label2colour.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/label2colour.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/label2colour.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/label2colour.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (315/400) [LB] bin/label2colour (316/400) [CC] tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fod2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fod2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fod2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fod2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (317/400) [LB] bin/fod2fixel (318/400) [CC] tmp/cmd/fixelreorient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fod2dec.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fod2dec.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fod2dec.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fod2dec.cpp:19: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (319/400) [LB] bin/fod2dec (320/400) [CC] tmp/src/fixel/filter/connect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelreorient.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelreorient.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelreorient.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelreorient.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (321/400) [LB] bin/fixelreorient (322/400) [CC] tmp/src/fixel/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/fixel/filter/connect.cpp -o tmp/src/fixel/filter/connect.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/filter/connect.h:21, from src/fixel/filter/connect.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/filter/connect.h:21, from src/fixel/filter/connect.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/filter/connect.h:21, from src/fixel/filter/connect.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/filter/connect.h:21, from src/fixel/filter/connect.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (323/400) [CC] tmp/src/fixel/index_remapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/fixel/index_remapper.cpp -o tmp/src/fixel/index_remapper.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/index_remapper.h:23, from src/fixel/index_remapper.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/index_remapper.h:23, from src/fixel/index_remapper.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/index_remapper.h:23, from src/fixel/index_remapper.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/index_remapper.h:23, from src/fixel/index_remapper.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (324/400) [CC] tmp/src/fixel/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/fixel/filter/smooth.cpp -o tmp/src/fixel/filter/smooth.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/matrix.h:21, from src/fixel/filter/smooth.h:21, from src/fixel/filter/smooth.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/matrix.h:21, from src/fixel/filter/smooth.h:21, from src/fixel/filter/smooth.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/matrix.h:21, from src/fixel/filter/smooth.h:21, from src/fixel/filter/smooth.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/matrix.h:21, from src/fixel/filter/smooth.h:21, from src/fixel/filter/smooth.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (325/400) [CC] tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/stats/cfe.cpp -o tmp/src/stats/cfe.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/stats/cfe.h:20, from src/stats/cfe.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/stats/cfe.h:20, from src/stats/cfe.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/stats/cfe.h:20, from src/stats/cfe.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/stats/cfe.h:20, from src/stats/cfe.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (326/400) [CC] tmp/cmd/fixelfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/fixel/matrix.cpp -o tmp/src/fixel/matrix.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/matrix.h:21, from src/fixel/matrix.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/matrix.h:21, from src/fixel/matrix.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/matrix.h:21, from src/fixel/matrix.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/matrix.h:21, from src/fixel/matrix.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (327/400) [CC] tmp/cmd/fixelcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelfilter.cpp -o tmp/cmd/fixelfilter.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelfilter.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelfilter.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelfilter.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelfilter.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (328/400) [LB] bin/fixelfilter g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcrop.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcrop.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcrop.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcrop.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (329/400) [LB] bin/fixelcrop (330/400) [CC] tmp/cmd/fixelcorrespondence.o (331/400) [CC] tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcorrespondence.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcorrespondence.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcorrespondence.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcorrespondence.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (332/400) [LB] bin/fixelcorrespondence g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (333/400) [LB] bin/fixelconvert (334/400) [CC] tmp/cmd/fixelconnectivity.o (335/400) [CC] tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelconnectivity.cpp -o tmp/cmd/fixelconnectivity.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelconnectivity.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelconnectivity.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelconnectivity.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelconnectivity.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (336/400) [LB] bin/fixelconnectivity (337/400) [CC] tmp/cmd/fixel2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcfestats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcfestats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcfestats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcfestats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (338/400) [LB] bin/fixelcfestats (339/400) [CC] tmp/cmd/fixel2tsf.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/apply.h:23, from cmd/fixel2voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/apply.h:23, from cmd/fixel2voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/apply.h:23, from cmd/fixel2voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/apply.h:23, from cmd/fixel2voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (340/400) [LB] bin/fixel2voxel g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2tsf.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2tsf.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2tsf.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2tsf.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (341/400) [LB] bin/fixel2tsf (342/400) [CC] tmp/cmd/fixel2sh.o (343/400) [CC] tmp/cmd/fixel2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixel2peaks.cpp -o tmp/cmd/fixel2peaks.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2peaks.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2peaks.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2peaks.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2peaks.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (344/400) [LB] bin/fixel2peaks g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2sh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2sh.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2sh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2sh.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (345/400) [LB] bin/fixel2sh (346/400) [CC] tmp/cmd/dwiextract.o (347/400) [CC] tmp/cmd/dwidenoise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwiextract.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwiextract.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwiextract.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwiextract.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (348/400) [LB] bin/dwiextract (349/400) [CC] tmp/cmd/dwi2tensor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2tensor.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2tensor.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2tensor.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2tensor.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (350/400) [LB] bin/dwi2tensor (351/400) [CC] tmp/cmd/dwi2mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (352/400) [LB] bin/dwi2mask (353/400) [CC] tmp/src/dwi/sdeconv/msmt_csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/sdeconv/msmt_csd.cpp -o tmp/src/dwi/sdeconv/msmt_csd.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/sdeconv/msmt_csd.h:20, from src/dwi/sdeconv/msmt_csd.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/sdeconv/msmt_csd.h:20, from src/dwi/sdeconv/msmt_csd.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/sdeconv/msmt_csd.h:20, from src/dwi/sdeconv/msmt_csd.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/sdeconv/msmt_csd.h:20, from src/dwi/sdeconv/msmt_csd.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (354/400) [CC] tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/sdeconv/csd.h:20, from src/dwi/sdeconv/csd.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/sdeconv/csd.h:20, from src/dwi/sdeconv/csd.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/sdeconv/csd.h:20, from src/dwi/sdeconv/csd.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/sdeconv/csd.h:20, from src/dwi/sdeconv/csd.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (355/400) [CC] tmp/cmd/dwi2fod.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2fod.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2fod.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2fod.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2fod.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (356/400) [LB] bin/dwi2fod (357/400) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (358/400) [LB] bin/dwi2adc (359/400) [CC] tmp/cmd/dirstat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirstat.cpp -o tmp/cmd/dirstat.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirstat.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirstat.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirstat.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirstat.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (360/400) [LB] bin/dirstat (361/400) [CC] tmp/cmd/dirsplit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirsplit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirsplit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirsplit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirsplit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (362/400) [LB] bin/dirsplit (363/400) [CC] tmp/cmd/dirorder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirorder.cpp -o tmp/cmd/dirorder.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirorder.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirorder.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirorder.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirorder.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (364/400) [LB] bin/dirorder (365/400) [CC] tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirmerge.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirmerge.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirmerge.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirmerge.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (366/400) [LB] bin/dirmerge (367/400) [CC] tmp/cmd/dirgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirgen.cpp -o tmp/cmd/dirgen.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirgen.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirgen.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirgen.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirgen.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (368/400) [LB] bin/dirgen (369/400) [CC] tmp/cmd/dirflip.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirflip.cpp -o tmp/cmd/dirflip.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirflip.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirflip.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirflip.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirflip.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (370/400) [LB] bin/dirflip (371/400) [CC] tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dcminfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dcminfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dcminfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dcminfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (372/400) [LB] bin/dcminfo (373/400) [CC] tmp/cmd/dcmedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dcmedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dcmedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dcmedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dcmedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (374/400) [LB] bin/dcmedit (375/400) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectomestats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectomestats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectomestats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectomestats.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (376/400) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/connectome/enhance.h:23, from src/connectome/enhance.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/connectome/enhance.h:23, from src/connectome/enhance.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/connectome/enhance.h:23, from src/connectome/enhance.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/connectome/enhance.h:23, from src/connectome/enhance.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (377/400) [LB] bin/connectomestats (378/400) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectomeedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectomeedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectomeedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectomeedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (379/400) [LB] bin/connectomeedit (380/400) [CC] tmp/cmd/connectome2tck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectome2tck.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectome2tck.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectome2tck.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectome2tck.cpp:20: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (381/400) [CC] tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/streamline.h:23, from src/dwi/tractography/connectome/exemplar.h:22, from src/dwi/tractography/connectome/exemplar.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/streamline.h:23, from src/dwi/tractography/connectome/exemplar.h:22, from src/dwi/tractography/connectome/exemplar.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/streamline.h:23, from src/dwi/tractography/connectome/exemplar.h:22, from src/dwi/tractography/connectome/exemplar.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/streamline.h:23, from src/dwi/tractography/connectome/exemplar.h:22, from src/dwi/tractography/connectome/exemplar.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (382/400) [CC] tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from src/dwi/tractography/connectome/extract.h:21, from src/dwi/tractography/connectome/extract.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from src/dwi/tractography/connectome/extract.h:21, from src/dwi/tractography/connectome/extract.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from src/dwi/tractography/connectome/extract.h:21, from src/dwi/tractography/connectome/extract.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from src/dwi/tractography/connectome/extract.h:21, from src/dwi/tractography/connectome/extract.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (383/400) [LB] bin/connectome2tck (384/400) [CC] tmp/cmd/amp2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/amp2sh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/amp2sh.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/amp2sh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/amp2sh.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (385/400) [LB] bin/amp2sh (386/400) [CC] tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/amp2response.cpp -o tmp/cmd/amp2response.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from cmd/amp2response.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from cmd/amp2response.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from cmd/amp2response.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Dense:1, from cmd/amp2response.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (387/400) [LB] bin/amp2response (388/400) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (389/400) [LB] bin/afdconnectivity (390/400) [CC] tmp/cmd/5ttedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5ttedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5ttedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5ttedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5ttedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (391/400) [LB] bin/5ttedit (392/400) [CC] tmp/cmd/5ttcheck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from cmd/5ttcheck.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from cmd/5ttcheck.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from cmd/5ttcheck.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from cmd/5ttcheck.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (393/400) [LB] bin/5ttcheck (394/400) [CC] tmp/cmd/5tt2vis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5tt2vis.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5tt2vis.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5tt2vis.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5tt2vis.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (395/400) [LB] bin/5tt2vis g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwidenoise.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwidenoise.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwidenoise.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwidenoise.cpp:18: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (396/400) [LB] bin/dwidenoise (397/400) [CC] tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5tt2gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5tt2gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5tt2gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5tt2gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (398/400) [LB] bin/5tt2gmwmi g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrtransform.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrtransform.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrtransform.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrtransform.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (399/400) [LB] bin/mrtransform g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DMRTRIX_TIFF_SUPPORT -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrregister.cpp -o tmp/cmd/mrregister.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrregister.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrregister.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrregister.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename Eigen::internal::unpacket_traits::type*) [with Packet = Eigen::internal::eigen_packet_wrapper; typename Eigen::internal::unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrregister.cpp:17: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-complain-wrong-lang’ may have been intended to silence earlier diagnostics (400/400) [LB] bin/mrregister + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.amJP88 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64 ++ dirname /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64 + cd mrtrix3-3.0.8 + mkdir -p /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3 + mkdir -p /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin + cp -a bin /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/ + cp -a lib /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/ + cp -a share /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/ + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5tt2gmwmi + binary_name=5tt2gmwmi + '[' 5tt2gmwmi '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2gmwmi /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/5tt2gmwmi + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5tt2vis + binary_name=5tt2vis + '[' 5tt2vis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2vis /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/5tt2vis + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5ttcheck + binary_name=5ttcheck + '[' 5ttcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttcheck /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/5ttcheck + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5ttedit + binary_name=5ttedit + '[' 5ttedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttedit /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/5ttedit + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5ttgen + binary_name=5ttgen + '[' 5ttgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttgen /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/5ttgen + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/afdconnectivity + binary_name=afdconnectivity + '[' afdconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/afdconnectivity /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/afdconnectivity + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/amp2response + binary_name=amp2response + '[' amp2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2response /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/amp2response + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/amp2sh + binary_name=amp2sh + '[' amp2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2sh /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/amp2sh + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/blend + binary_name=blend + '[' blend '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/blend /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/blend + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/connectome2tck + binary_name=connectome2tck + '[' connectome2tck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectome2tck /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/connectome2tck + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/connectomeedit + binary_name=connectomeedit + '[' connectomeedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomeedit /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/connectomeedit + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/connectomestats + binary_name=connectomestats + '[' connectomestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomestats /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/connectomestats + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/convert_bruker + binary_name=convert_bruker + '[' convert_bruker '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/convert_bruker /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/convert_bruker + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dcmedit + binary_name=dcmedit + '[' dcmedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcmedit /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dcmedit + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dcminfo + binary_name=dcminfo + '[' dcminfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcminfo /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dcminfo + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirflip + binary_name=dirflip + '[' dirflip '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirflip /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dirflip + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirgen + binary_name=dirgen + '[' dirgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirgen /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dirgen + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirmerge + binary_name=dirmerge + '[' dirmerge '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirmerge /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dirmerge + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirorder + binary_name=dirorder + '[' dirorder '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirorder /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dirorder + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirsplit + binary_name=dirsplit + '[' dirsplit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirsplit /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dirsplit + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirstat + binary_name=dirstat + '[' dirstat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirstat /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dirstat + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwi2adc + binary_name=dwi2adc + '[' dwi2adc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2adc /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwi2adc + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwi2fod + binary_name=dwi2fod + '[' dwi2fod '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2fod /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwi2fod + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwi2mask + binary_name=dwi2mask + '[' dwi2mask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2mask /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwi2mask + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwi2response + binary_name=dwi2response + '[' dwi2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2response /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwi2response + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwi2tensor + binary_name=dwi2tensor + '[' dwi2tensor '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2tensor /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwi2tensor + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwibiascorrect + binary_name=dwibiascorrect + '[' dwibiascorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwibiascorrect /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwibiascorrect + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwicat + binary_name=dwicat + '[' dwicat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwicat /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwicat + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwidenoise + binary_name=dwidenoise + '[' dwidenoise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwidenoise /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwidenoise + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwiextract + binary_name=dwiextract + '[' dwiextract '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwiextract /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwiextract + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwifslpreproc + binary_name=dwifslpreproc + '[' dwifslpreproc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwifslpreproc /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwifslpreproc + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwigradcheck + binary_name=dwigradcheck + '[' dwigradcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwigradcheck /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwigradcheck + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwinormalise + binary_name=dwinormalise + '[' dwinormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwinormalise /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwinormalise + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwishellmath + binary_name=dwishellmath + '[' dwishellmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwishellmath /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/dwishellmath + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixel2peaks + binary_name=fixel2peaks + '[' fixel2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2peaks /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fixel2peaks + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixel2sh + binary_name=fixel2sh + '[' fixel2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2sh /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fixel2sh + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixel2tsf + binary_name=fixel2tsf + '[' fixel2tsf '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2tsf /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fixel2tsf + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixel2voxel + binary_name=fixel2voxel + '[' fixel2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2voxel /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fixel2voxel + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelcfestats + binary_name=fixelcfestats + '[' fixelcfestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcfestats /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fixelcfestats + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelconnectivity + binary_name=fixelconnectivity + '[' fixelconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconnectivity /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fixelconnectivity + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelconvert + binary_name=fixelconvert + '[' fixelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fixelconvert + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelcorrespondence + binary_name=fixelcorrespondence + '[' fixelcorrespondence '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcorrespondence /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fixelcorrespondence + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelcrop + binary_name=fixelcrop + '[' fixelcrop '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcrop /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fixelcrop + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelfilter + binary_name=fixelfilter + '[' fixelfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelfilter /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fixelfilter + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelreorient + binary_name=fixelreorient + '[' fixelreorient '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelreorient /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fixelreorient + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fod2dec + binary_name=fod2dec + '[' fod2dec '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2dec /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fod2dec + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fod2fixel + binary_name=fod2fixel + '[' fod2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2fixel /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/fod2fixel + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/for_each + binary_name=for_each + '[' for_each '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/for_each /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/for_each + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/gen_scheme + binary_name=gen_scheme + '[' gen_scheme '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/gen_scheme /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/gen_scheme + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/label2colour + binary_name=label2colour + '[' label2colour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2colour /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/label2colour + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/label2mesh + binary_name=label2mesh + '[' label2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2mesh /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/label2mesh + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/labelconvert + binary_name=labelconvert + '[' labelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelconvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/labelconvert + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/labelsgmfix + binary_name=labelsgmfix + '[' labelsgmfix '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelsgmfix /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/labelsgmfix + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/labelstats + binary_name=labelstats + '[' labelstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelstats /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/labelstats + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/maskdump + binary_name=maskdump + '[' maskdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskdump /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/maskdump + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/maskfilter + binary_name=maskfilter + '[' maskfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskfilter /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/maskfilter + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mesh2voxel + binary_name=mesh2voxel + '[' mesh2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mesh2voxel /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mesh2voxel + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/meshconvert + binary_name=meshconvert + '[' meshconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshconvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/meshconvert + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/meshfilter + binary_name=meshfilter + '[' meshfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshfilter /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/meshfilter + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mraverageheader + binary_name=mraverageheader + '[' mraverageheader '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mraverageheader /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mraverageheader + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrcalc + binary_name=mrcalc + '[' mrcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcalc /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrcalc + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrcat + binary_name=mrcat + '[' mrcat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcat /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrcat + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrcentroid + binary_name=mrcentroid + '[' mrcentroid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcentroid /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrcentroid + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrcheckerboardmask + binary_name=mrcheckerboardmask + '[' mrcheckerboardmask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcheckerboardmask /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrcheckerboardmask + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrclusterstats + binary_name=mrclusterstats + '[' mrclusterstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrclusterstats /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrclusterstats + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrcolour + binary_name=mrcolour + '[' mrcolour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcolour /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrcolour + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrconvert + binary_name=mrconvert + '[' mrconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrconvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrconvert + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrdegibbs + binary_name=mrdegibbs + '[' mrdegibbs '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdegibbs /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrdegibbs + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrdump + binary_name=mrdump + '[' mrdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdump /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrdump + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mredit + binary_name=mredit + '[' mredit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mredit /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mredit + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrfilter + binary_name=mrfilter + '[' mrfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrfilter /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrfilter + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrgrid + binary_name=mrgrid + '[' mrgrid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrgrid /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrgrid + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrhistmatch + binary_name=mrhistmatch + '[' mrhistmatch '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistmatch /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrhistmatch + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrhistogram + binary_name=mrhistogram + '[' mrhistogram '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistogram /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrhistogram + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrinfo + binary_name=mrinfo + '[' mrinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrinfo /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrinfo + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrmath + binary_name=mrmath + '[' mrmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmath /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrmath + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrmetric + binary_name=mrmetric + '[' mrmetric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmetric /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrmetric + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrregister + binary_name=mrregister + '[' mrregister '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrregister /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrregister + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrstats + binary_name=mrstats + '[' mrstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrstats /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrstats + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrthreshold + binary_name=mrthreshold + '[' mrthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrthreshold /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrthreshold + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrtransform + binary_name=mrtransform + '[' mrtransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtransform /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrtransform + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrtrix3.py + binary_name=mrtrix3.py + '[' mrtrix3.py '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix3.py /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrtrix3.py + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrtrix_cleanup + binary_name=mrtrix_cleanup + '[' mrtrix_cleanup '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix_cleanup /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mrtrix_cleanup + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mtnormalise + binary_name=mtnormalise + '[' mtnormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mtnormalise /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/mtnormalise + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/notfound + binary_name=notfound + '[' notfound '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/notfound /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/notfound + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/peaks2amp + binary_name=peaks2amp + '[' peaks2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2amp /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/peaks2amp + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/peaks2fixel + binary_name=peaks2fixel + '[' peaks2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2fixel /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/peaks2fixel + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/population_template + binary_name=population_template + '[' population_template '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/population_template /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/population_template + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/responsemean + binary_name=responsemean + '[' responsemean '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/responsemean /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/responsemean + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/sh2amp + binary_name=sh2amp + '[' sh2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2amp /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/sh2amp + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/sh2peaks + binary_name=sh2peaks + '[' sh2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2peaks /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/sh2peaks + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/sh2power + binary_name=sh2power + '[' sh2power '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2power /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/sh2power + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/sh2response + binary_name=sh2response + '[' sh2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2response /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/sh2response + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/shbasis + binary_name=shbasis + '[' shbasis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shbasis /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/shbasis + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/shconv + binary_name=shconv + '[' shconv '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shconv /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/shconv + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tck2connectome + binary_name=tck2connectome + '[' tck2connectome '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2connectome /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tck2connectome + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tck2fixel + binary_name=tck2fixel + '[' tck2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2fixel /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tck2fixel + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckconvert + binary_name=tckconvert + '[' tckconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckconvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tckconvert + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckdfc + binary_name=tckdfc + '[' tckdfc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckdfc /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tckdfc + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckedit + binary_name=tckedit + '[' tckedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckedit /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tckedit + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckgen + binary_name=tckgen + '[' tckgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckgen /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tckgen + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckglobal + binary_name=tckglobal + '[' tckglobal '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckglobal /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tckglobal + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckinfo + binary_name=tckinfo + '[' tckinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckinfo /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tckinfo + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckmap + binary_name=tckmap + '[' tckmap '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckmap /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tckmap + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckresample + binary_name=tckresample + '[' tckresample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckresample /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tckresample + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tcksample + binary_name=tcksample + '[' tcksample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksample /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tcksample + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tcksift + binary_name=tcksift + '[' tcksift '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tcksift + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tcksift2 + binary_name=tcksift2 + '[' tcksift2 '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift2 /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tcksift2 + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckstats + binary_name=tckstats + '[' tckstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckstats /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tckstats + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tcktransform + binary_name=tcktransform + '[' tcktransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcktransform /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tcktransform + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tensor2metric + binary_name=tensor2metric + '[' tensor2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tensor2metric /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tensor2metric + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/transformcalc + binary_name=transformcalc + '[' transformcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcalc /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/transformcalc + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/transformcompose + binary_name=transformcompose + '[' transformcompose '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcompose /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/transformcompose + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/transformconvert + binary_name=transformconvert + '[' transformconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformconvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/transformconvert + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfdivide + binary_name=tsfdivide + '[' tsfdivide '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfdivide /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tsfdivide + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfinfo + binary_name=tsfinfo + '[' tsfinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfinfo /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tsfinfo + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfmult + binary_name=tsfmult + '[' tsfmult '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfmult /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tsfmult + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfsmooth + binary_name=tsfsmooth + '[' tsfsmooth '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfsmooth /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tsfsmooth + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfthreshold + binary_name=tsfthreshold + '[' tsfthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfthreshold /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tsfthreshold + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfvalidate + binary_name=tsfvalidate + '[' tsfvalidate '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfvalidate /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/tsfvalidate + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/vectorstats + binary_name=vectorstats + '[' vectorstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/vectorstats /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/vectorstats + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/voxel2fixel + binary_name=voxel2fixel + '[' voxel2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2fixel /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/voxel2fixel + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/voxel2mesh + binary_name=voxel2mesh + '[' voxel2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2mesh /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/voxel2mesh + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warp2metric + binary_name=warp2metric + '[' warp2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warp2metric /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/warp2metric + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warpconvert + binary_name=warpconvert + '[' warpconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpconvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/warpconvert + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warpcorrect + binary_name=warpcorrect + '[' warpcorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpcorrect /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/warpcorrect + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warpinit + binary_name=warpinit + '[' warpinit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinit /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/warpinit + for b in /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warpinvert + binary_name=warpinvert + '[' warpinvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/bin/warpinvert + '[' -z s ']' + shebang_flags=-kas + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kas /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5tt2gmwmi /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5tt2vis /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5ttcheck /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5ttedit /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5ttgen /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/afdconnectivity /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/amp2response /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/amp2sh /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/blend /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/connectome2tck /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/connectomeedit /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/connectomestats /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/convert_bruker /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dcmedit /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dcminfo /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirflip /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirgen /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirmerge /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirorder /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirsplit /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dirstat /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwi2adc /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwi2fod /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwi2mask /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwi2response /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwi2tensor /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwibiascorrect /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwicat /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwidenoise /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwiextract /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwifslpreproc /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwigradcheck /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwinormalise /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dwishellmath /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixel2peaks /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixel2sh /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixel2tsf /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixel2voxel /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelcfestats /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelconnectivity /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelconvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelcorrespondence /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelcrop /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelfilter /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelreorient /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fod2dec /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fod2fixel /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/for_each /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/gen_scheme /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/label2colour /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/label2mesh /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/labelconvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/labelsgmfix /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/labelstats /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/maskdump /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/maskfilter /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mesh2voxel /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/meshconvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/meshfilter /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mraverageheader /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrcalc /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrcat /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrcentroid /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrcheckerboardmask /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrclusterstats /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrcolour /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrconvert /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrdegibbs 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/builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warpcorrect: no change /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warpinit: no change /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warpinvert: no change + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 3.0.8-1.el9 --unique-debug-suffix -3.0.8-1.el9.aarch64 --unique-debug-src-base mrtrix3-3.0.8-1.el9.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/mrtrix3-3.0.8 extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5ttcheck extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5tt2gmwmi extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5tt2vis extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/5ttedit extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/afdconnectivity extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/amp2response extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/amp2sh extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/connectome2tck extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/connectomeedit extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/connectomestats extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/dcmedit extracting debug info from 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extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelconnectivity extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelconvert extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelcorrespondence extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelcrop extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelfilter extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fixelreorient extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fod2dec extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/fod2fixel extracting debug info from 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info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrmath extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrmetric extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrregister extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrstats extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrthreshold extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrtransform extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mtnormalise extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/peaks2amp extracting debug info from 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debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckconvert extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckdfc extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckedit extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckgen extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckglobal extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckinfo extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckmap extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckresample extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tcksample extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tcksift extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tcksift2 extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tckstats extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tcktransform extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tensor2metric extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/transformcalc extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/transformcompose extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/transformconvert extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfdivide extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfinfo extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfmult extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfsmooth extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfthreshold extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/tsfvalidate extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/vectorstats extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/voxel2fixel extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/voxel2mesh extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warp2metric extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warpconvert extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warpcorrect extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warpinit extracting debug info from /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/warpinvert dwz: Multifile temporary files too large original debug info size: 29813024kB, size after compression: 28492880kB /usr/bin/sepdebugcrcfix: Updated 110 CRC32s, 0 CRC32s did match. 10205 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib64/mrtrix3/bin/notfound from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mrtrix3/bin/gen_scheme from /bin/bash to #!/usr/bin/bash Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.HsnGFk + umask 022 + cd /builddir/build/BUILD + cd mrtrix3-3.0.8 + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/lib + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/lib + /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/lib64/mrtrix3/bin/mrinfo --version == mrinfo 3.0.8 == 64 bit release version with nogui, noshared, openmp, built Jan 4 2026, using Eigen 3.4.0 Author(s): J-Donald Tournier (jdtournier@gmail.com) and Robert E. Smith (robert.smith@florey.edu.au) Copyright (c) 2008-2025 the MRtrix3 contributors. This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/. Covered Software is provided under this License on an "as is" basis, without warranty of any kind, either expressed, implied, or statutory, including, without limitation, warranties that the Covered Software is free of defects, merchantable, fit for a particular purpose or non-infringing. See the Mozilla Public License v. 2.0 for more details. For more details, see http://www.mrtrix.org/. + RPM_EC=0 ++ jobs -p + exit 0 Processing files: mrtrix3-3.0.8-1.el9.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.fqFDl3 + umask 022 + cd /builddir/build/BUILD + cd mrtrix3-3.0.8 + DOCDIR=/builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/share/doc/mrtrix3 + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/share/doc/mrtrix3 + cp -pr README.md /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/share/doc/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ykSbsI + umask 022 + cd /builddir/build/BUILD + cd mrtrix3-3.0.8 + LICENSEDIR=/builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/share/licenses/mrtrix3 + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/share/licenses/mrtrix3 + cp -pr LICENCE.txt /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64/usr/share/licenses/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi warning: absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis warning: absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck warning: absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit warning: absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen warning: absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity warning: absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response warning: absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh warning: absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend warning: absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck warning: absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit warning: absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats warning: absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker warning: absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit warning: absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo warning: absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip warning: absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen warning: absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge warning: absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder warning: absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit warning: absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat warning: absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc warning: absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod warning: absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask warning: absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response warning: absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor warning: absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect warning: absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat warning: absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise warning: absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract warning: absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc warning: absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck warning: absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise warning: absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath warning: absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks warning: absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh warning: absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf warning: absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel warning: absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats warning: absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity warning: absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert warning: absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence warning: absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop warning: absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter warning: absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient warning: absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec warning: absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel warning: absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each warning: absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme warning: absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour warning: absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh warning: absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert warning: absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix warning: absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats warning: absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump warning: absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter warning: absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel warning: absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert warning: absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter warning: absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader warning: absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc warning: absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat warning: absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid warning: absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask warning: absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats warning: absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour warning: absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert warning: absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs warning: absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump warning: absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit warning: absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter warning: absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid warning: absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch warning: absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram warning: absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo warning: absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath warning: absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric warning: absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister warning: absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats warning: absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold warning: absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform warning: absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py warning: absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup warning: absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise warning: absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound warning: absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp warning: absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel warning: absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template warning: absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean warning: absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp warning: absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks warning: absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power warning: absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response warning: absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis warning: absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv warning: absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome warning: absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel warning: absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert warning: absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc warning: absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit warning: absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen warning: absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal warning: absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo warning: absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap warning: absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample warning: absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample warning: absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift warning: absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 warning: absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats warning: absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform warning: absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric warning: absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc warning: absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose warning: absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert warning: absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide warning: absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo warning: absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult warning: absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth warning: absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold warning: absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate warning: absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats warning: absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel warning: absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh warning: absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric warning: absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert warning: absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect warning: absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit warning: absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Provides: mrtrix3 = 3.0.8-1.el9 mrtrix3(aarch-64) = 3.0.8-1.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: mrtrix3-debugsource-3.0.8-1.el9.aarch64 Provides: mrtrix3-debugsource = 3.0.8-1.el9 mrtrix3-debugsource(aarch-64) = 3.0.8-1.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: mrtrix3-debuginfo-3.0.8-1.el9.aarch64 Provides: debuginfo(build-id) = 030477ec6b6413ef89d80e83af690794740a0ad0 debuginfo(build-id) = 05700629f12a9dc93336eb692fa2e31ab3a1ef42 debuginfo(build-id) = 0649e1ad01ad881a2604256efcd4acad363c6b9b debuginfo(build-id) = 09097d4870d94a63bbfc4824c566316c8a97846c debuginfo(build-id) = 0b4a8ebfdbaf51882b707b3372bf4bc63b35b2d2 debuginfo(build-id) = 0c1ffc259f447ab7a52c04b066a84974824b9012 debuginfo(build-id) = 0d6efac958c3b74b8cffad275f945adaadccce0d debuginfo(build-id) = 0f72b6cacda71dd65b47cc18467c124bb7498407 debuginfo(build-id) = 0fa4267e5b595bf013ba9a16f12eecf356055feb debuginfo(build-id) = 11fe0d58906780bb8255851ecf09e590f014012a debuginfo(build-id) = 12b263bf6fe48aceea34b2c9f985fe897ad6972c debuginfo(build-id) = 12f2eca588ea9d221d57db58225f39760303b905 debuginfo(build-id) = 134096708baf003da9fcfc2c3645efa48b295c2d debuginfo(build-id) = 139c7c2bdd4d5fd96407964971536205a5c9fcaf debuginfo(build-id) = 17a107dcdb9d5974596f6c06067bebb5a8802709 debuginfo(build-id) = 17e6d0847c6c3f5623bd0db43c70f6cc3a54446d debuginfo(build-id) = 1f8c0da47a87e7f73c923440a3f09c380a4f7163 debuginfo(build-id) = 2377d1fa4cab1154375a2f53fe4cf5b00025b7fa debuginfo(build-id) = 2524a2996da55fe0e2735d41053c5650813ff7f6 debuginfo(build-id) = 27bb36163c82771acd76eee0980a4778b565bdd8 debuginfo(build-id) = 2898dc5393e4ca342adbf2d245bc6b2c2b41d929 debuginfo(build-id) = 2a1fe03d83ee7239191ebdfb49cdc4bdc00c3ed8 debuginfo(build-id) = 2d54ef2aa660b581fc883fcdd7a419a469aa57ca debuginfo(build-id) = 2fefb147a2370fa6dd4fc949f08bb663af40d847 debuginfo(build-id) = 315249c75cd015f94e25d4eebb8133d5a54c689e debuginfo(build-id) = 31ca800bf20c6b51859ce93cf4be2737e2146421 debuginfo(build-id) = 3279187c6fd740b17d68ba50bdfcc65812d8c18e debuginfo(build-id) = 3978954250251e740167f5a1d07b0571112c1543 debuginfo(build-id) = 3a91a29c5a5063db30eaa95387e36dc405f8baa6 debuginfo(build-id) = 3b8a03bf6bf5f01294ce629b2a5c608adc2b3a73 debuginfo(build-id) = 3d82adc861af3738dfc8ec41395af8f067e205fc debuginfo(build-id) = 3e380d57ba518fb2d6829dd78910e9b665d385dd debuginfo(build-id) = 3f3689a589bd0e1bc9801bdf1413fa6978d03938 debuginfo(build-id) = 43aaec11e2a08b3ed70834370804eb77a627f7da debuginfo(build-id) = 4487b31fabc23e49c3b5e686d3862e0dac46dfc1 debuginfo(build-id) = 468c45c53cdca06a7ed749ad9fa4585e33a1d186 debuginfo(build-id) = 47078c8b6f8f4db91774611eebd7f408af99fc9a debuginfo(build-id) = 4a26d80966be36cfdbb34d7ea7fc934a05363940 debuginfo(build-id) = 4e5b732e124ecdafb0ebb7d0f6fd4a4d76129726 debuginfo(build-id) = 4ec43cb209c259c1237ba27878702b9a1706ad34 debuginfo(build-id) = 5387ade8e6139f70bae84b9e0a58e1898e6629b8 debuginfo(build-id) = 55e172ada37891285e20b8b442215c513ff7b6b9 debuginfo(build-id) = 56e077263508c087328504253121f4405dac1046 debuginfo(build-id) = 57be8b4b4554d3e615cc90beb984f4158e0f11e0 debuginfo(build-id) = 59c03443bf02d0d7e7b81f5b4378bd14e64f9e11 debuginfo(build-id) = 5cbca0f0cb0d3054fccceaa007ad2caafe43b10b debuginfo(build-id) = 60b929e23cd9ab9d94f2fccc57607b442c51c30e debuginfo(build-id) = 6652e11f939005bd7aa0ebc1d81339e96fea99c7 debuginfo(build-id) = 66d8efffc851623c67d77e68a08410a7b321600e debuginfo(build-id) = 681f4830a675b00307720168322c16aeeffbd189 debuginfo(build-id) = 6d3723beba86e7a85ce71615dd67cc73ea830cc0 debuginfo(build-id) = 6ed257a6d73c1ecbb063c0f079a480567fdb7b7d debuginfo(build-id) = 7008bbaad1a95b7519e6eca41f1355f56cabb4d1 debuginfo(build-id) = 7599bd0258c3d5e748787225b79db1a8541025aa debuginfo(build-id) = 76f8de251f80b01717f8dcd6d1d91ecbff6250b9 debuginfo(build-id) = 7b0c19df9ea01e0297581dcedfea47c0c4486223 debuginfo(build-id) = 7bc2cba92a58cbb4a95964f965eb147b5012bda4 debuginfo(build-id) = 805bbbc42c4952c43523f0f200f6a3627b505c30 debuginfo(build-id) = 8278ad3f5afca706aad32aafa0ba6987a1b5ba36 debuginfo(build-id) = 82b1c25c6d74df3d5996697e0e78b963520d410a debuginfo(build-id) = 853ef25434cee49b2c15395e891c90c41af51d84 debuginfo(build-id) = 8896bfdcc3d478ddad5e00aa7878d2b731131fe6 debuginfo(build-id) = 88b2d6b3ec6feb1353024fc89d97fbc4b820c6c3 debuginfo(build-id) = 89365bbc65bd25dbf0b79637419f1ac51667a4ab debuginfo(build-id) = 919858b564f387adf8a70864144a62ef88ed9a57 debuginfo(build-id) = 96db132b1e59d12eea5391dd78b61690339a3384 debuginfo(build-id) = 96f76000ba6916dbed1d4e63b2b63ce3238fb3da debuginfo(build-id) = 9b0942d7e34466aa5885240869a1a53c67d5730b debuginfo(build-id) = 9c0bfbebba6854df554abb1cdb2c70adabe3f02d debuginfo(build-id) = 9e030b28f9165292695583e60bf7e1ba16fdc1fe debuginfo(build-id) = 9eebb779c41e76e6c0d373262eff414d7e5c1791 debuginfo(build-id) = 9eecdfd1924431e4b64d40955c4cb7054372ea6d debuginfo(build-id) = a6bdc6155b229b74ad7cbf6cf581946560d989b5 debuginfo(build-id) = aafcfc16328114ba2decaeea48689ea98ed6634f debuginfo(build-id) = aee3ccfb97c92d3a4b50ec772fca9907b1af9222 debuginfo(build-id) = aef2cea34a1b94f96816650a237fa7c15d0ca270 debuginfo(build-id) = b342e1b4b53383d406cc054f05bf0085a43c9a20 debuginfo(build-id) = b42013cdb4216cc165144b226dcc5ef6d9e0f0ca debuginfo(build-id) = b9ef256812b2cd6dce35567a16939ea16273143e debuginfo(build-id) = bad4c87c6c805ba3244a725492e239e3b0f95a82 debuginfo(build-id) = bbe5c0f77e85c029f13b8637a8379ff0621826e5 debuginfo(build-id) = bf32fffca642f79db8e2dc0af7b97db640f5f5f7 debuginfo(build-id) = c445936f24e39880244f662bcd5973d73406cc18 debuginfo(build-id) = c53d060a6b42be6328e867e5becc4ae2c6bb0ffb debuginfo(build-id) = c8bcfd0cc120e7ca0b4874626aa9acbffb583943 debuginfo(build-id) = c95f565547e5024a59c7977e2a0bc5d58059da2f debuginfo(build-id) = cac151fe0c46e6205487c055e5e6bf803d10c0d5 debuginfo(build-id) = cd21b343d5581e1f38df242bc044c75ded5262cb debuginfo(build-id) = cfab75e60f13cd0d6769d812873d5569e0926286 debuginfo(build-id) = d32c0bd1c8dc547db98b431d7a139fcab3cf6ec7 debuginfo(build-id) = d7328342a94f620579efd2e15282bc78fa2470bd debuginfo(build-id) = dafb0b3ce90dff17f6a5652a2201e19b2a0be7eb debuginfo(build-id) = db07504236fe657dcd1e56113a08e6575d0585b2 debuginfo(build-id) = dcf3bef9d741511c4bf5fb55748c3487c74086d5 debuginfo(build-id) = df152cb678c36ac58930e3b1eb640500960d6c6e debuginfo(build-id) = e087226f300cca6bc56e4e3173155fb564f79aa8 debuginfo(build-id) = e13c582dbfbc5eabc455abb925f2d820dfdb6789 debuginfo(build-id) = e1e2b1b68705ea598113bf6f44c9fd203262ad8b debuginfo(build-id) = e539095669847f1fc33524ccf6441abedc992d1c debuginfo(build-id) = e78e42c1c9d416c0aaf0ab61dddb1a5bbb8724dd debuginfo(build-id) = ea028e3971732a9804d5b9bef19ac9ea92e75e69 debuginfo(build-id) = ea60d300ed2fe9b1e4b94a3f92e33f0d76b553dd debuginfo(build-id) = ebb3c767cde151e8c01fc582b59183c2eef51d0f debuginfo(build-id) = edee75b507a099bca1e42ede5104612fd3f401d3 debuginfo(build-id) = f1d197e983b3f941a457efba0083aaf9fafa7499 debuginfo(build-id) = f5dc4405d94d49fb524ec8af1c8b3d1d11ee8097 debuginfo(build-id) = f6e6e32fd348f82d921fd0d8f82f208202487762 debuginfo(build-id) = f761133e5e7e7c9b6cbbdb06f2ea4ce4658b1c12 debuginfo(build-id) = fa1773a4b5ee6b6d9a571911ea1dde3d2282974b debuginfo(build-id) = fb9399671eb70148d4db9d6c75e20fad6a3679b3 mrtrix3-debuginfo = 3.0.8-1.el9 mrtrix3-debuginfo(aarch-64) = 3.0.8-1.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: mrtrix3-debugsource(aarch-64) = 3.0.8-1.el9 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mrtrix3-3.0.8-1.el9.aarch64 Wrote: /builddir/build/RPMS/mrtrix3-debugsource-3.0.8-1.el9.aarch64.rpm Wrote: /builddir/build/RPMS/mrtrix3-3.0.8-1.el9.aarch64.rpm !! Copr timeout => sending INT Copr build error: Build failed