Warning: Permanently added '13.220.253.8' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10102933-fedora-43-aarch64 --chroot fedora-43-aarch64 Version: 1.6 PID: 10124 Logging PID: 10126 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 10102933, 'buildroot_pkgs': [], 'chroot': 'fedora-43-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '6c88ff8e135a27ad3b6fe6ef07b22f68830deba5', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'mrtrix3', 'package_version': '3.0.8-1', 'project_dirname': 'neurofedora', 'project_name': 'neurofedora', 'project_owner': 'mhough', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-43-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'mhough/neurofedora--mhough', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'mhough', 'tags': [], 'task_id': '10102933-fedora-43-aarch64', 'timeout': 36000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3 /var/lib/copr-rpmbuild/workspace/workdir-qd6__2eb/mrtrix3 --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', '/var/lib/copr-rpmbuild/workspace/workdir-qd6__2eb/mrtrix3', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-qd6__2eb/mrtrix3'... Running: git checkout 6c88ff8e135a27ad3b6fe6ef07b22f68830deba5 -- cmd: ['git', 'checkout', '6c88ff8e135a27ad3b6fe6ef07b22f68830deba5', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-qd6__2eb/mrtrix3 rc: 0 stdout: stderr: Note: switching to '6c88ff8e135a27ad3b6fe6ef07b22f68830deba5'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 6c88ff8 automatic import of mrtrix3 Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-qd6__2eb/mrtrix3 rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading mrtrix3-3.0.8.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o mrtrix3-3.0.8.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/mrtrix3-3.0.8.tar.gz/md5/0c77980d9c5d01ebbfea44f437bf942a/mrtrix3-3.0.8.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3962k 100 3962k 0 0 149M 0 --:--:-- --:--:-- --:--:-- 154M INFO: Reading stdout from command: md5sum mrtrix3-3.0.8.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=36000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-qd6__2eb/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-qd6__2eb/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1770510917.736673 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.6 starting (python version = 3.14.2, NVR = mock-6.6-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-qd6__2eb/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-qd6__2eb/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1770510917.736673 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-qd6__2eb/mrtrix3/mrtrix3.spec) Config(fedora-43-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.6 INFO: Mock Version: 6.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-bootstrap-1770510917.736673/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:43 INFO: Pulling image: registry.fedoraproject.org/fedora:43 INFO: Tagging container image as mock-bootstrap-36a00645-6d1a-43c0-8b74-b2ce0cc5eb3e INFO: Checking that d98f45860f171c2974dad066bba88bcfb4c10df81ff0fe5a06c7f7f8b6b7b381 image matches host's architecture INFO: Copy content of container d98f45860f171c2974dad066bba88bcfb4c10df81ff0fe5a06c7f7f8b6b7b381 to /var/lib/mock/fedora-43-aarch64-bootstrap-1770510917.736673/root INFO: mounting d98f45860f171c2974dad066bba88bcfb4c10df81ff0fe5a06c7f7f8b6b7b381 with podman image mount INFO: image d98f45860f171c2974dad066bba88bcfb4c10df81ff0fe5a06c7f7f8b6b7b381 as /var/lib/containers/storage/overlay/5d99d4c618e0dabab89984a11a26704b8ceb39ad8170c9ec4b06fd5ba29f3fd3/merged INFO: umounting image d98f45860f171c2974dad066bba88bcfb4c10df81ff0fe5a06c7f7f8b6b7b381 (/var/lib/containers/storage/overlay/5d99d4c618e0dabab89984a11a26704b8ceb39ad8170c9ec4b06fd5ba29f3fd3/merged) with podman image umount INFO: Removing image mock-bootstrap-36a00645-6d1a-43c0-8b74-b2ce0cc5eb3e INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-1770510917.736673/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc43.aarch64 rpm-sequoia-1.10.0-1.fc43.aarch64 dnf5-5.2.17.0-2.fc43.aarch64 dnf5-plugins-5.2.17.0-2.fc43.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 32.6 KiB/s | 7.1 KiB | 00m00s updates 100% | 35.3 MiB/s | 43.7 MiB | 00m01s fedora 100% | 12.8 MiB/s | 34.2 MiB | 00m03s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.3.0-2.fc43 fedora 8.4 MiB bzip2 aarch64 1.0.8-21.fc43 fedora 171.3 KiB coreutils aarch64 9.7-7.fc43 updates 8.2 MiB cpio aarch64 2.15-6.fc43 fedora 1.1 MiB diffutils aarch64 3.12-3.fc43 fedora 1.6 MiB fedora-release-common noarch 43-26 updates 20.5 KiB findutils aarch64 1:4.10.0-6.fc43 fedora 1.9 MiB gawk aarch64 5.3.2-2.fc43 fedora 2.6 MiB glibc-minimal-langpack aarch64 2.42-9.fc43 updates 0.0 B grep aarch64 3.12-2.fc43 fedora 1.0 MiB gzip aarch64 1.13-4.fc43 fedora 424.7 KiB info aarch64 7.2-6.fc43 fedora 421.6 KiB patch aarch64 2.8-2.fc43 fedora 262.5 KiB redhat-rpm-config noarch 343-11.fc43 fedora 182.9 KiB rpm-build aarch64 6.0.1-1.fc43 updates 599.0 KiB sed aarch64 4.9-5.fc43 fedora 873.2 KiB shadow-utils aarch64 2:4.18.0-3.fc43 fedora 4.4 MiB tar aarch64 2:1.35-6.fc43 fedora 3.0 MiB unzip aarch64 6.0-67.fc43 fedora 470.2 KiB util-linux aarch64 2.41.3-7.fc43 updates 6.8 MiB which aarch64 2.23-3.fc43 fedora 123.4 KiB xz aarch64 1:5.8.1-4.fc43 updates 1.4 MiB Installing dependencies: add-determinism aarch64 0.6.0-2.fc43 fedora 2.1 MiB alternatives aarch64 1.33-3.fc43 updates 90.2 KiB ansible-srpm-macros noarch 1-18.1.fc43 fedora 35.7 KiB audit-libs aarch64 4.1.3-1.fc43 updates 486.9 KiB binutils aarch64 2.45.1-4.fc43 updates 31.0 MiB build-reproducibility-srpm-macros noarch 0.6.0-2.fc43 fedora 735.0 B bzip2-libs aarch64 1.0.8-21.fc43 fedora 72.6 KiB ca-certificates noarch 2025.2.80_v9.0.304-1.1.fc43 fedora 2.7 MiB coreutils-common aarch64 9.7-7.fc43 updates 11.3 MiB crypto-policies noarch 20251125-1.git63291f8.fc43 updates 147.1 KiB curl aarch64 8.15.0-5.fc43 updates 457.6 KiB cyrus-sasl-lib aarch64 2.1.28-33.fc43 fedora 2.4 MiB debugedit aarch64 5.2-3.fc43 fedora 317.9 KiB dwz aarch64 0.16-2.fc43 fedora 322.6 KiB ed aarch64 1.22.2-1.fc43 fedora 156.0 KiB efi-srpm-macros noarch 6-4.fc43 fedora 40.1 KiB elfutils aarch64 0.194-1.fc43 updates 3.2 MiB elfutils-debuginfod-client aarch64 0.194-1.fc43 updates 144.0 KiB elfutils-default-yama-scope noarch 0.194-1.fc43 updates 1.8 KiB elfutils-libelf aarch64 0.194-1.fc43 updates 1.1 MiB elfutils-libs aarch64 0.194-1.fc43 updates 746.7 KiB fedora-gpg-keys noarch 43-1 fedora 131.2 KiB fedora-release noarch 43-26 updates 0.0 B fedora-release-identity-basic noarch 43-26 updates 631.0 B fedora-repos noarch 43-1 fedora 4.9 KiB file aarch64 5.46-8.fc43 fedora 140.2 KiB file-libs aarch64 5.46-8.fc43 fedora 11.9 MiB filesystem aarch64 3.18-50.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-50.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-23.fc43 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-3.fc43 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-15.fc43 fedora 144.0 B gap-srpm-macros noarch 2-1.fc43 fedora 2.1 KiB gdb-minimal aarch64 17.1-1.fc43 updates 13.4 MiB gdbm-libs aarch64 1:1.23-10.fc43 fedora 233.9 KiB ghc-srpm-macros noarch 1.9.2-3.fc43 fedora 779.0 B glibc aarch64 2.42-9.fc43 updates 6.3 MiB glibc-common aarch64 2.42-9.fc43 updates 1.3 MiB glibc-gconv-extra aarch64 2.42-9.fc43 updates 18.6 MiB gmp aarch64 1:6.3.0-4.fc43 fedora 657.9 KiB gnat-srpm-macros noarch 7-1.fc43 updates 1.0 KiB gnulib-l10n noarch 20241231-1.fc43 fedora 655.0 KiB gnupg2 aarch64 2.4.9-5.fc43 updates 6.5 MiB gnupg2-dirmngr aarch64 2.4.9-5.fc43 updates 646.4 KiB gnupg2-gpg-agent aarch64 2.4.9-5.fc43 updates 847.3 KiB gnupg2-gpgconf aarch64 2.4.9-5.fc43 updates 321.9 KiB gnupg2-keyboxd aarch64 2.4.9-5.fc43 updates 233.3 KiB gnupg2-verify aarch64 2.4.9-5.fc43 updates 364.4 KiB gnutls aarch64 3.8.11-5.fc43 updates 3.6 MiB go-srpm-macros noarch 3.8.0-1.fc43 fedora 61.9 KiB gpgverify noarch 2.2-3.fc43 fedora 8.7 KiB ima-evm-utils-libs aarch64 1.6.2-6.fc43 fedora 92.7 KiB jansson aarch64 2.14-3.fc43 fedora 93.1 KiB java-srpm-macros noarch 1-7.fc43 fedora 870.0 B json-c aarch64 0.18-7.fc43 fedora 138.7 KiB kernel-srpm-macros noarch 1.0-27.fc43 fedora 1.9 KiB keyutils-libs aarch64 1.6.3-6.fc43 fedora 98.3 KiB krb5-libs aarch64 1.21.3-7.fc43 fedora 2.5 MiB libacl aarch64 2.3.2-4.fc43 fedora 68.0 KiB libarchive aarch64 3.8.4-1.fc43 updates 975.3 KiB libassuan aarch64 2.5.7-4.fc43 fedora 215.8 KiB libattr aarch64 2.5.2-6.fc43 fedora 68.5 KiB libblkid aarch64 2.41.3-7.fc43 updates 290.5 KiB libbrotli aarch64 1.2.0-1.fc43 updates 909.5 KiB libcap aarch64 2.76-3.fc43 fedora 508.8 KiB libcap-ng aarch64 0.9-7.fc43 updates 160.9 KiB libcom_err aarch64 1.47.3-2.fc43 fedora 111.2 KiB libcurl aarch64 8.15.0-5.fc43 updates 915.1 KiB libeconf aarch64 0.7.9-2.fc43 fedora 81.0 KiB libevent aarch64 2.1.12-16.fc43 fedora 1.1 MiB libfdisk aarch64 2.41.3-7.fc43 updates 418.9 KiB libffi aarch64 3.5.2-1.fc43 updates 155.9 KiB libfsverity aarch64 1.6-3.fc43 fedora 68.5 KiB libgcc aarch64 15.2.1-7.fc43 updates 222.2 KiB libgcrypt aarch64 1.11.1-3.fc43 updates 1.2 MiB libgomp aarch64 15.2.1-7.fc43 updates 517.0 KiB libgpg-error aarch64 1.55-2.fc43 fedora 971.3 KiB libidn2 aarch64 2.3.8-2.fc43 fedora 560.6 KiB libksba aarch64 1.6.7-4.fc43 fedora 398.4 KiB liblastlog2 aarch64 2.41.3-7.fc43 updates 138.0 KiB libmount aarch64 2.41.3-7.fc43 updates 420.2 KiB libnghttp2 aarch64 1.66.0-2.fc43 fedora 197.9 KiB libpkgconf aarch64 2.3.0-3.fc43 fedora 134.0 KiB libpsl aarch64 0.21.5-6.fc43 fedora 132.5 KiB libselinux aarch64 3.9-5.fc43 fedora 201.1 KiB libsemanage aarch64 3.9-4.fc43 fedora 360.2 KiB libsepol aarch64 3.9-2.fc43 fedora 809.8 KiB libsmartcols aarch64 2.41.3-7.fc43 updates 224.6 KiB libssh aarch64 0.11.3-1.fc43 fedora 587.0 KiB libssh-config noarch 0.11.3-1.fc43 fedora 277.0 B libstdc++ aarch64 15.2.1-7.fc43 updates 2.8 MiB libtasn1 aarch64 4.20.0-2.fc43 fedora 220.4 KiB libtool-ltdl aarch64 2.5.4-8.fc43 updates 94.0 KiB libunistring aarch64 1.1-10.fc43 fedora 1.7 MiB libusb1 aarch64 1.0.29-4.fc43 fedora 178.9 KiB libuuid aarch64 2.41.3-7.fc43 updates 69.4 KiB libverto aarch64 0.3.2-11.fc43 fedora 69.4 KiB libxcrypt aarch64 4.5.2-1.fc43 updates 273.4 KiB libxml2 aarch64 2.12.10-5.fc43 fedora 1.9 MiB libzstd aarch64 1.5.7-2.fc43 fedora 667.7 KiB lua-libs aarch64 5.4.8-4.fc43 updates 329.9 KiB lua-srpm-macros noarch 1-16.fc43 fedora 1.3 KiB lz4-libs aarch64 1.10.0-3.fc43 fedora 197.4 KiB mpfr aarch64 4.2.2-2.fc43 fedora 755.5 KiB ncurses-base noarch 6.5-7.20250614.fc43 fedora 328.1 KiB ncurses-libs aarch64 6.5-7.20250614.fc43 fedora 1.2 MiB nettle aarch64 3.10.1-2.fc43 fedora 765.3 KiB npth aarch64 1.8-3.fc43 fedora 93.5 KiB ocaml-srpm-macros noarch 11-2.fc43 fedora 1.9 KiB openblas-srpm-macros noarch 2-20.fc43 fedora 112.0 B openldap aarch64 2.6.10-4.fc43 fedora 761.9 KiB openssl-libs aarch64 1:3.5.4-2.fc43 updates 7.4 MiB p11-kit aarch64 0.25.8-1.fc43 fedora 2.5 MiB p11-kit-trust aarch64 0.25.8-1.fc43 fedora 530.3 KiB package-notes-srpm-macros noarch 0.5-14.fc43 fedora 1.6 KiB pam-libs aarch64 1.7.1-4.fc43 updates 223.0 KiB pcre2 aarch64 10.47-1.fc43 updates 714.5 KiB pcre2-syntax noarch 10.47-1.fc43 updates 281.9 KiB perl-srpm-macros noarch 1-60.fc43 fedora 861.0 B pkgconf aarch64 2.3.0-3.fc43 fedora 112.4 KiB pkgconf-m4 noarch 2.3.0-3.fc43 fedora 14.4 KiB pkgconf-pkg-config aarch64 2.3.0-3.fc43 fedora 990.0 B popt aarch64 1.19-9.fc43 fedora 144.8 KiB publicsuffix-list-dafsa noarch 20260116-1.fc43 updates 70.4 KiB pyproject-srpm-macros noarch 1.18.6-1.fc43 updates 1.9 KiB python-srpm-macros noarch 3.14-5.fc43 fedora 51.5 KiB qt5-srpm-macros noarch 5.15.18-1.fc43 updates 500.0 B qt6-srpm-macros noarch 6.10.1-1.fc43 updates 464.0 B readline aarch64 8.3-2.fc43 fedora 563.8 KiB rpm aarch64 6.0.1-1.fc43 updates 3.4 MiB rpm-build-libs aarch64 6.0.1-1.fc43 updates 264.1 KiB rpm-libs aarch64 6.0.1-1.fc43 updates 995.5 KiB rpm-sequoia aarch64 1.10.0-1.fc43 updates 2.3 MiB rpm-sign-libs aarch64 6.0.1-1.fc43 updates 67.8 KiB rust-srpm-macros noarch 28.4-1.fc43 updates 5.5 KiB setup noarch 2.15.0-26.fc43 fedora 725.0 KiB sqlite-libs aarch64 3.50.2-2.fc43 fedora 1.5 MiB systemd-libs aarch64 258.3-3.fc43 updates 2.4 MiB systemd-standalone-sysusers aarch64 258.3-3.fc43 updates 329.6 KiB tpm2-tss aarch64 4.1.3-8.fc43 fedora 2.1 MiB tree-sitter-srpm-macros noarch 0.4.2-1.fc43 fedora 8.3 KiB util-linux-core aarch64 2.41.3-7.fc43 updates 2.4 MiB xxhash-libs aarch64 0.8.3-3.fc43 fedora 86.0 KiB xz-libs aarch64 1:5.8.1-4.fc43 updates 201.6 KiB zig-srpm-macros noarch 1-5.fc43 fedora 1.1 KiB zip aarch64 3.0-44.fc43 fedora 762.5 KiB zlib-ng-compat aarch64 2.3.2-2.fc43 updates 133.5 KiB zstd aarch64 1.5.7-2.fc43 fedora 1.5 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 170 packages Total size of inbound packages is 58 MiB. Need to download 58 MiB. After this operation, 226 MiB extra will be used (install 226 MiB, remove 0 B). [ 1/170] bzip2-0:1.0.8-21.fc43.aarch64 100% | 183.6 KiB/s | 51.6 KiB | 00m00s [ 2/170] cpio-0:2.15-6.fc43.aarch64 100% | 626.8 KiB/s | 289.6 KiB | 00m00s [ 3/170] diffutils-0:3.12-3.fc43.aarch 100% | 1.4 MiB/s | 389.7 KiB | 00m00s [ 4/170] findutils-1:4.10.0-6.fc43.aar 100% | 3.2 MiB/s | 552.7 KiB | 00m00s [ 5/170] grep-0:3.12-2.fc43.aarch64 100% | 2.5 MiB/s | 296.2 KiB | 00m00s [ 6/170] gzip-0:1.13-4.fc43.aarch64 100% | 1.4 MiB/s | 167.6 KiB | 00m00s [ 7/170] gawk-0:5.3.2-2.fc43.aarch64 100% | 2.9 MiB/s | 1.1 MiB | 00m00s [ 8/170] info-0:7.2-6.fc43.aarch64 100% | 2.1 MiB/s | 179.4 KiB | 00m00s [ 9/170] bash-0:5.3.0-2.fc43.aarch64 100% | 1.9 MiB/s | 1.8 MiB | 00m01s [ 10/170] patch-0:2.8-2.fc43.aarch64 100% | 1.7 MiB/s | 111.6 KiB | 00m00s [ 11/170] redhat-rpm-config-0:343-11.fc 100% | 1.2 MiB/s | 79.1 KiB | 00m00s [ 12/170] sed-0:4.9-5.fc43.aarch64 100% | 1.3 MiB/s | 314.4 KiB | 00m00s [ 13/170] tar-2:1.35-6.fc43.aarch64 100% | 2.6 MiB/s | 850.8 KiB | 00m00s [ 14/170] which-0:2.23-3.fc43.aarch64 100% | 517.0 KiB/s | 41.4 KiB | 00m00s [ 15/170] coreutils-0:9.7-7.fc43.aarch6 100% | 4.5 MiB/s | 1.1 MiB | 00m00s [ 16/170] fedora-release-common-0:43-26 100% | 572.3 KiB/s | 23.5 KiB | 00m00s [ 17/170] unzip-0:6.0-67.fc43.aarch64 100% | 381.5 KiB/s | 185.4 KiB | 00m00s [ 18/170] glibc-minimal-langpack-0:2.42 100% | 997.3 KiB/s | 40.9 KiB | 00m00s [ 19/170] shadow-utils-2:4.18.0-3.fc43. 100% | 1.7 MiB/s | 1.3 MiB | 00m01s [ 20/170] rpm-build-0:6.0.1-1.fc43.aarc 100% | 1.5 MiB/s | 132.4 KiB | 00m00s [ 21/170] xz-1:5.8.1-4.fc43.aarch64 100% | 2.8 MiB/s | 573.5 KiB | 00m00s [ 22/170] util-linux-0:2.41.3-7.fc43.aa 100% | 4.8 MiB/s | 1.2 MiB | 00m00s [ 23/170] filesystem-0:3.18-50.fc43.aar 100% | 6.8 MiB/s | 1.3 MiB | 00m00s [ 24/170] ncurses-libs-0:6.5-7.20250614 100% | 3.3 MiB/s | 324.6 KiB | 00m00s [ 25/170] bzip2-libs-0:1.0.8-21.fc43.aa 100% | 511.2 KiB/s | 40.9 KiB | 00m00s [ 26/170] libselinux-0:3.9-5.fc43.aarch 100% | 1.2 MiB/s | 96.6 KiB | 00m00s [ 27/170] readline-0:8.3-2.fc43.aarch64 100% | 2.0 MiB/s | 221.8 KiB | 00m00s [ 28/170] mpfr-0:4.2.2-2.fc43.aarch64 100% | 2.1 MiB/s | 322.0 KiB | 00m00s [ 29/170] ed-0:1.22.2-1.fc43.aarch64 100% | 966.4 KiB/s | 83.1 KiB | 00m00s [ 30/170] libattr-0:2.5.2-6.fc43.aarch6 100% | 233.2 KiB/s | 17.7 KiB | 00m00s [ 31/170] gmp-1:6.3.0-4.fc43.aarch64 100% | 938.7 KiB/s | 271.3 KiB | 00m00s [ 32/170] build-reproducibility-srpm-ma 100% | 179.1 KiB/s | 11.8 KiB | 00m00s [ 33/170] dwz-0:0.16-2.fc43.aarch64 100% | 2.0 MiB/s | 132.2 KiB | 00m00s [ 34/170] efi-srpm-macros-0:6-4.fc43.no 100% | 339.3 KiB/s | 22.4 KiB | 00m00s [ 35/170] ansible-srpm-macros-0:1-18.1. 100% | 113.8 KiB/s | 19.9 KiB | 00m00s [ 36/170] file-0:5.46-8.fc43.aarch64 100% | 756.4 KiB/s | 49.2 KiB | 00m00s [ 37/170] filesystem-srpm-macros-0:3.18 100% | 400.2 KiB/s | 26.4 KiB | 00m00s [ 38/170] forge-srpm-macros-0:0.4.0-3.f 100% | 309.1 KiB/s | 20.1 KiB | 00m00s [ 39/170] fpc-srpm-macros-0:1.3-15.fc43 100% | 119.6 KiB/s | 7.9 KiB | 00m00s [ 40/170] fonts-srpm-macros-1:2.0.5-23. 100% | 204.3 KiB/s | 27.2 KiB | 00m00s [ 41/170] gap-srpm-macros-0:2-1.fc43.no 100% | 138.0 KiB/s | 9.0 KiB | 00m00s [ 42/170] ghc-srpm-macros-0:1.9.2-3.fc4 100% | 132.5 KiB/s | 8.7 KiB | 00m00s [ 43/170] java-srpm-macros-0:1-7.fc43.n 100% | 122.2 KiB/s | 7.9 KiB | 00m00s [ 44/170] go-srpm-macros-0:3.8.0-1.fc43 100% | 269.6 KiB/s | 28.3 KiB | 00m00s [ 45/170] kernel-srpm-macros-0:1.0-27.f 100% | 135.2 KiB/s | 8.9 KiB | 00m00s [ 46/170] lua-srpm-macros-0:1-16.fc43.n 100% | 134.7 KiB/s | 8.8 KiB | 00m00s [ 47/170] openblas-srpm-macros-0:2-20.f 100% | 115.1 KiB/s | 7.6 KiB | 00m00s [ 48/170] ocaml-srpm-macros-0:11-2.fc43 100% | 95.5 KiB/s | 9.3 KiB | 00m00s [ 49/170] package-notes-srpm-macros-0:0 100% | 136.1 KiB/s | 9.0 KiB | 00m00s [ 50/170] perl-srpm-macros-0:1-60.fc43. 100% | 125.6 KiB/s | 8.3 KiB | 00m00s [ 51/170] python-srpm-macros-0:3.14-5.f 100% | 354.1 KiB/s | 23.4 KiB | 00m00s [ 52/170] tree-sitter-srpm-macros-0:0.4 100% | 205.4 KiB/s | 13.4 KiB | 00m00s [ 53/170] zig-srpm-macros-0:1-5.fc43.no 100% | 127.8 KiB/s | 8.4 KiB | 00m00s [ 54/170] libeconf-0:0.7.9-2.fc43.aarch 100% | 532.8 KiB/s | 35.2 KiB | 00m00s [ 55/170] libacl-0:2.3.2-4.fc43.aarch64 100% | 302.1 KiB/s | 24.2 KiB | 00m00s [ 56/170] setup-0:2.15.0-26.fc43.noarch 100% | 2.0 MiB/s | 157.3 KiB | 00m00s [ 57/170] coreutils-common-0:9.7-7.fc43 100% | 13.1 MiB/s | 2.1 MiB | 00m00s [ 58/170] libcap-0:2.76-3.fc43.aarch64 100% | 1.0 MiB/s | 87.9 KiB | 00m00s [ 59/170] fedora-repos-0:43-1.noarch 100% | 140.3 KiB/s | 9.1 KiB | 00m00s [ 60/170] zip-0:3.0-44.fc43.aarch64 100% | 489.9 KiB/s | 262.6 KiB | 00m01s [ 61/170] glibc-0:2.42-9.fc43.aarch64 100% | 40.5 MiB/s | 1.8 MiB | 00m00s [ 62/170] glibc-common-0:2.42-9.fc43.aa 100% | 7.5 MiB/s | 315.9 KiB | 00m00s [ 63/170] debugedit-0:5.2-3.fc43.aarch6 100% | 864.0 KiB/s | 84.7 KiB | 00m00s [ 64/170] rpm-0:6.0.1-1.fc43.aarch64 100% | 3.8 MiB/s | 576.3 KiB | 00m00s [ 65/170] pkgconf-pkg-config-0:2.3.0-3. 100% | 145.2 KiB/s | 9.6 KiB | 00m00s [ 66/170] popt-0:1.19-9.fc43.aarch64 100% | 438.3 KiB/s | 65.3 KiB | 00m00s [ 67/170] libblkid-0:2.41.3-7.fc43.aarc 100% | 2.6 MiB/s | 121.5 KiB | 00m00s [ 68/170] libfdisk-0:2.41.3-7.fc43.aarc 100% | 3.7 MiB/s | 154.2 KiB | 00m00s [ 69/170] liblastlog2-0:2.41.3-7.fc43.a 100% | 420.2 KiB/s | 23.5 KiB | 00m00s [ 70/170] zstd-0:1.5.7-2.fc43.aarch64 100% | 1.7 MiB/s | 446.9 KiB | 00m00s [ 71/170] libmount-0:2.41.3-7.fc43.aarc 100% | 2.7 MiB/s | 158.6 KiB | 00m00s [ 72/170] libsmartcols-0:2.41.3-7.fc43. 100% | 1.8 MiB/s | 82.5 KiB | 00m00s [ 73/170] libuuid-0:2.41.3-7.fc43.aarch 100% | 519.1 KiB/s | 26.0 KiB | 00m00s [ 74/170] util-linux-core-0:2.41.3-7.fc 100% | 7.8 MiB/s | 541.1 KiB | 00m00s [ 75/170] xz-libs-1:5.8.1-4.fc43.aarch6 100% | 2.2 MiB/s | 111.1 KiB | 00m00s [ 76/170] libsepol-0:3.9-2.fc43.aarch64 100% | 3.0 MiB/s | 323.6 KiB | 00m00s [ 77/170] ncurses-base-0:6.5-7.20250614 100% | 412.2 KiB/s | 88.2 KiB | 00m00s [ 78/170] add-determinism-0:0.6.0-2.fc4 100% | 6.3 MiB/s | 851.5 KiB | 00m00s [ 79/170] gnulib-l10n-0:20241231-1.fc43 100% | 2.2 MiB/s | 150.2 KiB | 00m00s [ 80/170] fedora-gpg-keys-0:43-1.noarch 100% | 2.1 MiB/s | 138.9 KiB | 00m00s [ 81/170] glibc-gconv-extra-0:2.42-9.fc 100% | 25.5 MiB/s | 1.7 MiB | 00m00s [ 82/170] pkgconf-0:2.3.0-3.fc43.aarch6 100% | 672.7 KiB/s | 44.4 KiB | 00m00s [ 83/170] pkgconf-m4-0:2.3.0-3.fc43.noa 100% | 214.0 KiB/s | 13.9 KiB | 00m00s [ 84/170] lz4-libs-0:1.10.0-3.fc43.aarc 100% | 1.1 MiB/s | 79.5 KiB | 00m00s [ 85/170] sqlite-libs-0:3.50.2-2.fc43.a 100% | 4.6 MiB/s | 742.8 KiB | 00m00s [ 86/170] file-libs-0:5.46-8.fc43.aarch 100% | 1.2 MiB/s | 848.0 KiB | 00m01s [ 87/170] libpkgconf-0:2.3.0-3.fc43.aar 100% | 582.9 KiB/s | 37.9 KiB | 00m00s [ 88/170] rpm-libs-0:6.0.1-1.fc43.aarch 100% | 7.7 MiB/s | 379.8 KiB | 00m00s [ 89/170] rpm-build-libs-0:6.0.1-1.fc43 100% | 2.3 MiB/s | 117.5 KiB | 00m00s [ 90/170] rpm-sign-libs-0:6.0.1-1.fc43. 100% | 620.4 KiB/s | 27.3 KiB | 00m00s [ 91/170] libzstd-0:1.5.7-2.fc43.aarch6 100% | 1.6 MiB/s | 283.6 KiB | 00m00s [ 92/170] ima-evm-utils-libs-0:1.6.2-6. 100% | 293.2 KiB/s | 29.3 KiB | 00m00s [ 93/170] libfsverity-0:1.6-3.fc43.aarc 100% | 218.5 KiB/s | 18.6 KiB | 00m00s [ 94/170] json-c-0:0.18-7.fc43.aarch64 100% | 550.3 KiB/s | 45.1 KiB | 00m00s [ 95/170] tpm2-tss-0:4.1.3-8.fc43.aarch 100% | 2.4 MiB/s | 400.5 KiB | 00m00s [ 96/170] libusb1-0:1.0.29-4.fc43.aarch 100% | 969.1 KiB/s | 77.5 KiB | 00m00s [ 97/170] libgcc-0:15.2.1-7.fc43.aarch6 100% | 2.9 MiB/s | 120.5 KiB | 00m00s [ 98/170] libstdc++-0:15.2.1-7.fc43.aar 100% | 13.5 MiB/s | 854.9 KiB | 00m00s [ 99/170] zlib-ng-compat-0:2.3.2-2.fc43 100% | 840.0 KiB/s | 72.2 KiB | 00m00s [100/170] openssl-libs-1:3.5.4-2.fc43.a 100% | 37.7 MiB/s | 2.4 MiB | 00m00s [101/170] ca-certificates-0:2025.2.80_v 100% | 14.0 MiB/s | 975.4 KiB | 00m00s [102/170] p11-kit-trust-0:0.25.8-1.fc43 100% | 1.8 MiB/s | 138.6 KiB | 00m00s [103/170] libtasn1-0:4.20.0-2.fc43.aarc 100% | 971.3 KiB/s | 73.8 KiB | 00m00s [104/170] audit-libs-0:4.1.3-1.fc43.aar 100% | 3.3 MiB/s | 139.8 KiB | 00m00s [105/170] libxcrypt-0:4.5.2-1.fc43.aarc 100% | 3.0 MiB/s | 125.2 KiB | 00m00s [106/170] pam-libs-0:1.7.1-4.fc43.aarch 100% | 1.1 MiB/s | 56.8 KiB | 00m00s [107/170] gnat-srpm-macros-0:7-1.fc43.n 100% | 188.2 KiB/s | 8.7 KiB | 00m00s [108/170] p11-kit-0:0.25.8-1.fc43.aarch 100% | 1.3 MiB/s | 492.3 KiB | 00m00s [109/170] pyproject-srpm-macros-0:1.18. 100% | 267.8 KiB/s | 13.4 KiB | 00m00s [110/170] qt5-srpm-macros-0:5.15.18-1.f 100% | 183.0 KiB/s | 8.6 KiB | 00m00s [111/170] qt6-srpm-macros-0:6.10.1-1.fc 100% | 199.1 KiB/s | 9.4 KiB | 00m00s [112/170] rust-srpm-macros-0:28.4-1.fc4 100% | 187.0 KiB/s | 10.8 KiB | 00m00s [113/170] alternatives-0:1.33-3.fc43.aa 100% | 650.2 KiB/s | 40.3 KiB | 00m00s [114/170] libffi-0:3.5.2-1.fc43.aarch64 100% | 570.6 KiB/s | 39.4 KiB | 00m00s [115/170] systemd-libs-0:258.3-3.fc43.a 100% | 17.9 MiB/s | 787.5 KiB | 00m00s [116/170] pcre2-syntax-0:10.47-1.fc43.n 100% | 1.9 MiB/s | 164.7 KiB | 00m00s [117/170] pcre2-0:10.47-1.fc43.aarch64 100% | 1.9 MiB/s | 246.2 KiB | 00m00s [118/170] elfutils-libs-0:0.194-1.fc43. 100% | 3.3 MiB/s | 266.0 KiB | 00m00s [119/170] elfutils-libelf-0:0.194-1.fc4 100% | 1.5 MiB/s | 202.3 KiB | 00m00s [120/170] elfutils-0:0.194-1.fc43.aarch 100% | 6.5 MiB/s | 535.6 KiB | 00m00s [121/170] elfutils-debuginfod-client-0: 100% | 890.4 KiB/s | 46.3 KiB | 00m00s [122/170] jansson-0:2.14-3.fc43.aarch64 100% | 707.4 KiB/s | 46.7 KiB | 00m00s [123/170] binutils-0:2.45.1-4.fc43.aarc 100% | 67.6 MiB/s | 6.3 MiB | 00m00s [124/170] libcap-ng-0:0.9-7.fc43.aarch6 100% | 727.0 KiB/s | 32.7 KiB | 00m00s [125/170] gnupg2-0:2.4.9-5.fc43.aarch64 100% | 24.9 MiB/s | 1.6 MiB | 00m00s [126/170] gpgverify-0:2.2-3.fc43.noarch 100% | 168.2 KiB/s | 11.1 KiB | 00m00s [127/170] gnupg2-dirmngr-0:2.4.9-5.fc43 100% | 6.3 MiB/s | 266.2 KiB | 00m00s [128/170] gnupg2-gpg-agent-0:2.4.9-5.fc 100% | 6.3 MiB/s | 266.4 KiB | 00m00s [129/170] gnupg2-gpgconf-0:2.4.9-5.fc43 100% | 2.7 MiB/s | 114.0 KiB | 00m00s [130/170] gnupg2-keyboxd-0:2.4.9-5.fc43 100% | 2.2 MiB/s | 91.4 KiB | 00m00s [131/170] gnupg2-verify-0:2.4.9-5.fc43. 100% | 3.9 MiB/s | 164.3 KiB | 00m00s [132/170] libgpg-error-0:1.55-2.fc43.aa 100% | 2.1 MiB/s | 243.5 KiB | 00m00s [133/170] libassuan-0:2.5.7-4.fc43.aarc 100% | 468.4 KiB/s | 66.5 KiB | 00m00s [134/170] npth-0:1.8-3.fc43.aarch64 100% | 271.8 KiB/s | 25.0 KiB | 00m00s [135/170] libksba-0:1.6.7-4.fc43.aarch6 100% | 1.3 MiB/s | 157.5 KiB | 00m00s [136/170] openldap-0:2.6.10-4.fc43.aarc 100% | 2.6 MiB/s | 251.1 KiB | 00m00s [137/170] libevent-0:2.1.12-16.fc43.aar 100% | 1.6 MiB/s | 253.4 KiB | 00m00s [138/170] gdbm-libs-1:1.23-10.fc43.aarc 100% | 643.9 KiB/s | 56.0 KiB | 00m00s [139/170] cyrus-sasl-lib-0:2.1.28-33.fc 100% | 2.3 MiB/s | 774.0 KiB | 00m00s [140/170] lua-libs-0:5.4.8-4.fc43.aarch 100% | 2.7 MiB/s | 129.1 KiB | 00m00s [141/170] libgomp-0:15.2.1-7.fc43.aarch 100% | 8.7 MiB/s | 365.4 KiB | 00m00s [142/170] rpm-sequoia-0:1.10.0-1.fc43.a 100% | 7.6 MiB/s | 891.7 KiB | 00m00s [143/170] libarchive-0:3.8.4-1.fc43.aar 100% | 3.3 MiB/s | 413.6 KiB | 00m00s [144/170] curl-0:8.15.0-5.fc43.aarch64 100% | 5.4 MiB/s | 224.9 KiB | 00m00s [145/170] crypto-policies-0:20251125-1. 100% | 1.9 MiB/s | 97.8 KiB | 00m00s [146/170] libxml2-0:2.12.10-5.fc43.aarc 100% | 2.3 MiB/s | 678.7 KiB | 00m00s [147/170] libgcrypt-0:1.11.1-3.fc43.aar 100% | 3.8 MiB/s | 518.4 KiB | 00m00s [148/170] libidn2-0:2.3.8-2.fc43.aarch6 100% | 1.2 MiB/s | 174.6 KiB | 00m00s [149/170] gnutls-0:3.8.11-5.fc43.aarch6 100% | 7.7 MiB/s | 1.3 MiB | 00m00s [150/170] libunistring-0:1.1-10.fc43.aa 100% | 5.0 MiB/s | 539.2 KiB | 00m00s [151/170] elfutils-default-yama-scope-0 100% | 301.9 KiB/s | 12.4 KiB | 00m00s [152/170] nettle-0:3.10.1-2.fc43.aarch6 100% | 1.9 MiB/s | 425.7 KiB | 00m00s [153/170] fedora-release-0:43-26.noarch 100% | 253.1 KiB/s | 12.4 KiB | 00m00s [154/170] libtool-ltdl-0:2.5.4-8.fc43.a 100% | 234.2 KiB/s | 35.6 KiB | 00m00s [155/170] xxhash-libs-0:0.8.3-3.fc43.aa 100% | 267.1 KiB/s | 34.5 KiB | 00m00s [156/170] systemd-standalone-sysusers-0 100% | 2.0 MiB/s | 141.5 KiB | 00m00s [157/170] fedora-release-identity-basic 100% | 268.7 KiB/s | 13.2 KiB | 00m00s [158/170] gdb-minimal-0:17.1-1.fc43.aar 100% | 15.4 MiB/s | 4.2 MiB | 00m00s [159/170] libcurl-0:8.15.0-5.fc43.aarch 100% | 9.1 MiB/s | 392.7 KiB | 00m00s [160/170] libnghttp2-0:1.66.0-2.fc43.aa 100% | 811.2 KiB/s | 72.2 KiB | 00m00s [161/170] libpsl-0:0.21.5-6.fc43.aarch6 100% | 794.2 KiB/s | 65.1 KiB | 00m00s [162/170] krb5-libs-0:1.21.3-7.fc43.aar 100% | 3.6 MiB/s | 751.0 KiB | 00m00s [163/170] keyutils-libs-0:1.6.3-6.fc43. 100% | 274.0 KiB/s | 31.5 KiB | 00m00s [164/170] libssh-0:0.11.3-1.fc43.aarch6 100% | 1.8 MiB/s | 230.6 KiB | 00m00s [165/170] libverto-0:0.3.2-11.fc43.aarc 100% | 272.4 KiB/s | 20.4 KiB | 00m00s [166/170] libcom_err-0:1.47.3-2.fc43.aa 100% | 264.4 KiB/s | 26.7 KiB | 00m00s [167/170] publicsuffix-list-dafsa-0:202 100% | 1.4 MiB/s | 60.3 KiB | 00m00s [168/170] libssh-config-0:0.11.3-1.fc43 100% | 140.2 KiB/s | 9.1 KiB | 00m00s [169/170] libbrotli-0:1.2.0-1.fc43.aarc 100% | 6.5 MiB/s | 350.4 KiB | 00m00s [170/170] libsemanage-0:3.9-4.fc43.aarc 100% | 20.3 KiB/s | 119.5 KiB | 00m06s -------------------------------------------------------------------------------- [170/170] Total 100% | 6.5 MiB/s | 57.8 MiB | 00m09s Running transaction Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/172] Verify package files 100% | 798.0 B/s | 170.0 B | 00m00s [ 2/172] Prepare transaction 100% | 2.6 KiB/s | 170.0 B | 00m00s [ 3/172] Installing libgcc-0:15.2.1-7. 100% | 109.3 MiB/s | 223.9 KiB | 00m00s [ 4/172] Installing publicsuffix-list- 100% | 69.4 MiB/s | 71.1 KiB | 00m00s [ 5/172] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/172] Installing fedora-release-ide 100% | 867.2 KiB/s | 888.0 B | 00m00s [ 7/172] Installing fedora-gpg-keys-0: 100% | 29.1 MiB/s | 179.0 KiB | 00m00s [ 8/172] Installing fedora-repos-0:43- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/172] Installing fedora-release-com 100% | 24.2 MiB/s | 24.8 KiB | 00m00s [ 10/172] Installing fedora-release-0:4 100% | 15.1 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 11/172] Installing setup-0:2.15.0-26. 100% | 37.6 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/172] Installing filesystem-0:3.18- 100% | 1.8 MiB/s | 212.8 KiB | 00m00s [ 13/172] Installing pcre2-syntax-0:10. 100% | 138.8 MiB/s | 284.3 KiB | 00m00s [ 14/172] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [ 15/172] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [ 16/172] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 17/172] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 18/172] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 19/172] Installing gnulib-l10n-0:2024 100% | 129.3 MiB/s | 661.9 KiB | 00m00s [ 20/172] Installing coreutils-common-0 100% | 289.5 MiB/s | 11.3 MiB | 00m00s [ 21/172] Installing ncurses-base-0:6.5 100% | 49.3 MiB/s | 353.5 KiB | 00m00s [ 22/172] Installing bash-0:5.3.0-2.fc4 100% | 200.7 MiB/s | 8.4 MiB | 00m00s [ 23/172] Installing glibc-common-0:2.4 100% | 57.6 MiB/s | 1.3 MiB | 00m00s [ 24/172] Installing glibc-gconv-extra- 100% | 365.9 MiB/s | 18.7 MiB | 00m00s [ 25/172] Installing glibc-0:2.42-9.fc4 100% | 146.1 MiB/s | 6.3 MiB | 00m00s [ 26/172] Installing ncurses-libs-0:6.5 100% | 249.5 MiB/s | 1.2 MiB | 00m00s [ 27/172] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 28/172] Installing zlib-ng-compat-0:2 100% | 131.1 MiB/s | 134.3 KiB | 00m00s [ 29/172] Installing bzip2-libs-0:1.0.8 100% | 72.0 MiB/s | 73.8 KiB | 00m00s [ 30/172] Installing libgpg-error-0:1.5 100% | 45.4 MiB/s | 977.1 KiB | 00m00s [ 31/172] Installing libstdc++-0:15.2.1 100% | 315.1 MiB/s | 2.8 MiB | 00m00s [ 32/172] Installing xz-libs-1:5.8.1-4. 100% | 197.9 MiB/s | 202.7 KiB | 00m00s [ 33/172] Installing libassuan-0:2.5.7- 100% | 212.6 MiB/s | 217.7 KiB | 00m00s [ 34/172] Installing libgcrypt-0:1.11.1 100% | 238.9 MiB/s | 1.2 MiB | 00m00s [ 35/172] Installing readline-0:8.3-2.f 100% | 184.2 MiB/s | 565.9 KiB | 00m00s [ 36/172] Installing gmp-1:6.3.0-4.fc43 100% | 214.9 MiB/s | 660.1 KiB | 00m00s [ 37/172] Installing libuuid-0:2.41.3-7 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [ 38/172] Installing popt-0:1.19-9.fc43 100% | 49.3 MiB/s | 151.4 KiB | 00m00s [ 39/172] Installing npth-0:1.8-3.fc43. 100% | 92.4 MiB/s | 94.6 KiB | 00m00s [ 40/172] Installing libblkid-0:2.41.3- 100% | 142.4 MiB/s | 291.6 KiB | 00m00s [ 41/172] Installing sqlite-libs-0:3.50 100% | 250.2 MiB/s | 1.5 MiB | 00m00s [ 42/172] Installing libzstd-0:1.5.7-2. 100% | 217.8 MiB/s | 669.0 KiB | 00m00s [ 43/172] Installing elfutils-libelf-0: 100% | 286.1 MiB/s | 1.1 MiB | 00m00s [ 44/172] Installing libxcrypt-0:4.5.2- 100% | 134.8 MiB/s | 276.1 KiB | 00m00s [ 45/172] Installing gnupg2-gpgconf-0:2 100% | 18.6 MiB/s | 324.0 KiB | 00m00s [ 46/172] Installing libattr-0:2.5.2-6. 100% | 67.8 MiB/s | 69.4 KiB | 00m00s [ 47/172] Installing libacl-0:2.3.2-4.f 100% | 67.2 MiB/s | 68.8 KiB | 00m00s [ 48/172] Installing libtasn1-0:4.20.0- 100% | 217.0 MiB/s | 222.2 KiB | 00m00s [ 49/172] Installing libunistring-0:1.1 100% | 291.0 MiB/s | 1.7 MiB | 00m00s [ 50/172] Installing libidn2-0:2.3.8-2. 100% | 50.3 MiB/s | 566.7 KiB | 00m00s [ 51/172] Installing crypto-policies-0: 100% | 18.7 MiB/s | 172.2 KiB | 00m00s [ 52/172] Installing dwz-0:0.16-2.fc43. 100% | 16.7 MiB/s | 324.0 KiB | 00m00s [ 53/172] Installing gnupg2-verify-0:2. 100% | 21.0 MiB/s | 365.8 KiB | 00m00s [ 54/172] Installing mpfr-0:4.2.2-2.fc4 100% | 184.9 MiB/s | 757.2 KiB | 00m00s [ 55/172] Installing gawk-0:5.3.2-2.fc4 100% | 99.3 MiB/s | 2.6 MiB | 00m00s [ 56/172] Installing libksba-0:1.6.7-4. 100% | 195.8 MiB/s | 401.0 KiB | 00m00s [ 57/172] Installing unzip-0:6.0-67.fc4 100% | 27.2 MiB/s | 473.7 KiB | 00m00s [ 58/172] Installing file-libs-0:5.46-8 100% | 540.0 MiB/s | 11.9 MiB | 00m00s [ 59/172] Installing file-0:5.46-8.fc43 100% | 8.1 MiB/s | 141.7 KiB | 00m00s [ 60/172] Installing libeconf-0:0.7.9-2 100% | 80.7 MiB/s | 82.6 KiB | 00m00s [ 61/172] Installing libsmartcols-0:2.4 100% | 220.4 MiB/s | 225.7 KiB | 00m00s [ 62/172] Installing libsepol-0:3.9-2.f 100% | 263.9 MiB/s | 810.8 KiB | 00m00s [ 63/172] Installing lz4-libs-0:1.10.0- 100% | 193.9 MiB/s | 198.5 KiB | 00m00s [ 64/172] Installing json-c-0:0.18-7.fc 100% | 136.7 MiB/s | 139.9 KiB | 00m00s [ 65/172] Installing alternatives-0:1.3 100% | 5.6 MiB/s | 91.8 KiB | 00m00s [ 66/172] Installing libffi-0:3.5.2-1.f 100% | 153.6 MiB/s | 157.3 KiB | 00m00s [ 67/172] Installing p11-kit-0:0.25.8-1 100% | 89.8 MiB/s | 2.5 MiB | 00m00s [ 68/172] Installing p11-kit-trust-0:0. 100% | 20.0 MiB/s | 532.0 KiB | 00m00s [ 69/172] Installing pcre2-0:10.47-1.fc 100% | 233.0 MiB/s | 715.9 KiB | 00m00s [ 70/172] Installing libselinux-0:3.9-5 100% | 98.8 MiB/s | 202.4 KiB | 00m00s [ 71/172] Installing grep-0:3.12-2.fc43 100% | 45.1 MiB/s | 1.0 MiB | 00m00s [ 72/172] Installing findutils-1:4.10.0 100% | 76.8 MiB/s | 1.9 MiB | 00m00s [ 73/172] Installing sed-0:4.9-5.fc43.a 100% | 39.1 MiB/s | 881.4 KiB | 00m00s [ 74/172] Installing xz-1:5.8.1-4.fc43. 100% | 56.5 MiB/s | 1.4 MiB | 00m00s [ 75/172] Installing libmount-0:2.41.3- 100% | 205.7 MiB/s | 421.2 KiB | 00m00s [ 76/172] Installing libcap-ng-0:0.9-7. 100% | 159.0 MiB/s | 162.8 KiB | 00m00s [ 77/172] Installing audit-libs-0:4.1.3 100% | 238.9 MiB/s | 489.3 KiB | 00m00s [ 78/172] Installing pam-libs-0:1.7.1-4 100% | 220.0 MiB/s | 225.3 KiB | 00m00s [ 79/172] Installing libcap-0:2.76-3.fc 100% | 26.4 MiB/s | 513.9 KiB | 00m00s [ 80/172] Installing systemd-libs-0:258 100% | 266.7 MiB/s | 2.4 MiB | 00m00s [ 81/172] Installing openssl-libs-1:3.5 100% | 296.9 MiB/s | 7.4 MiB | 00m00s [ 82/172] Installing coreutils-0:9.7-7. 100% | 171.4 MiB/s | 8.2 MiB | 00m00s [ 83/172] Installing ca-certificates-0: 100% | 1.4 MiB/s | 2.5 MiB | 00m02s [ 84/172] Installing lua-libs-0:5.4.8-4 100% | 161.8 MiB/s | 331.4 KiB | 00m00s [ 85/172] Installing gzip-0:1.13-4.fc43 100% | 22.1 MiB/s | 430.2 KiB | 00m00s [ 86/172] Installing libfsverity-0:1.6- 100% | 67.8 MiB/s | 69.4 KiB | 00m00s [ 87/172] Installing libevent-0:2.1.12- 100% | 271.3 MiB/s | 1.1 MiB | 00m00s [ 88/172] Installing rpm-sequoia-0:1.10 100% | 256.3 MiB/s | 2.3 MiB | 00m00s [ 89/172] Installing util-linux-core-0: 100% | 91.3 MiB/s | 2.5 MiB | 00m00s [ 90/172] Installing libusb1-0:1.0.29-4 100% | 17.6 MiB/s | 180.6 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.aarch64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.aarch64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [ 91/172] Installing tpm2-tss-0:4.1.3-8 100% | 239.9 MiB/s | 2.2 MiB | 00m00s [ 92/172] Installing ima-evm-utils-libs 100% | 91.8 MiB/s | 94.0 KiB | 00m00s [ 93/172] Installing gnupg2-gpg-agent-0 100% | 30.8 MiB/s | 851.3 KiB | 00m00s [ 94/172] Installing systemd-standalone 100% | 17.9 MiB/s | 330.1 KiB | 00m00s [ 95/172] Installing rpm-libs-0:6.0.1-1 100% | 243.4 MiB/s | 997.1 KiB | 00m00s [ 96/172] Installing libsemanage-0:3.9- 100% | 176.7 MiB/s | 361.9 KiB | 00m00s [ 97/172] Installing tar-2:1.35-6.fc43. 100% | 107.3 MiB/s | 3.0 MiB | 00m00s [ 98/172] Installing zstd-0:1.5.7-2.fc4 100% | 68.5 MiB/s | 1.5 MiB | 00m00s [ 99/172] Installing zip-0:3.0-44.fc43. 100% | 39.4 MiB/s | 766.4 KiB | 00m00s [100/172] Installing gnupg2-keyboxd-0:2 100% | 28.6 MiB/s | 234.6 KiB | 00m00s [101/172] Installing libpsl-0:0.21.5-6. 100% | 130.5 MiB/s | 133.6 KiB | 00m00s [102/172] Installing liblastlog2-0:2.41 100% | 17.1 MiB/s | 140.0 KiB | 00m00s [103/172] Installing libfdisk-0:2.41.3- 100% | 205.0 MiB/s | 419.9 KiB | 00m00s [104/172] Installing nettle-0:3.10.1-2. 100% | 187.6 MiB/s | 768.4 KiB | 00m00s [105/172] Installing gnutls-0:3.8.11-5. 100% | 259.6 MiB/s | 3.6 MiB | 00m00s [106/172] Installing libxml2-0:2.12.10- 100% | 75.7 MiB/s | 1.9 MiB | 00m00s [107/172] Installing libarchive-0:3.8.4 100% | 238.6 MiB/s | 977.2 KiB | 00m00s [108/172] Installing bzip2-0:1.0.8-21.f 100% | 10.1 MiB/s | 175.8 KiB | 00m00s [109/172] Installing add-determinism-0: 100% | 91.4 MiB/s | 2.1 MiB | 00m00s [110/172] Installing build-reproducibil 100% | 1.0 MiB/s | 1.0 KiB | 00m00s [111/172] Installing cpio-0:2.15-6.fc43 100% | 49.8 MiB/s | 1.1 MiB | 00m00s [112/172] Installing diffutils-0:3.12-3 100% | 67.6 MiB/s | 1.6 MiB | 00m00s [113/172] Installing ed-0:1.22.2-1.fc43 100% | 9.1 MiB/s | 158.3 KiB | 00m00s [114/172] Installing patch-0:2.8-2.fc43 100% | 15.2 MiB/s | 264.1 KiB | 00m00s [115/172] Installing libpkgconf-0:2.3.0 100% | 132.0 MiB/s | 135.1 KiB | 00m00s [116/172] Installing pkgconf-0:2.3.0-3. 100% | 6.6 MiB/s | 114.9 KiB | 00m00s [117/172] Installing pkgconf-pkg-config 100% | 110.8 KiB/s | 1.8 KiB | 00m00s [118/172] Installing jansson-0:2.14-3.f 100% | 92.3 MiB/s | 94.5 KiB | 00m00s [119/172] Installing gdbm-libs-1:1.23-1 100% | 115.1 MiB/s | 235.6 KiB | 00m00s [120/172] Installing cyrus-sasl-lib-0:2 100% | 100.7 MiB/s | 2.4 MiB | 00m00s [121/172] Installing libgomp-0:15.2.1-7 100% | 253.1 MiB/s | 518.4 KiB | 00m00s [122/172] Installing libtool-ltdl-0:2.5 100% | 92.9 MiB/s | 95.1 KiB | 00m00s [123/172] Installing openldap-0:2.6.10- 100% | 186.9 MiB/s | 765.6 KiB | 00m00s [124/172] Installing gnupg2-dirmngr-0:2 100% | 24.4 MiB/s | 649.1 KiB | 00m00s [125/172] Installing gnupg2-0:2.4.9-5.f 100% | 163.5 MiB/s | 6.5 MiB | 00m00s [126/172] Installing rpm-sign-libs-0:6. 100% | 67.0 MiB/s | 68.6 KiB | 00m00s [127/172] Installing gpgverify-0:2.2-3. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [128/172] Installing xxhash-libs-0:0.8. 100% | 85.3 MiB/s | 87.4 KiB | 00m00s [129/172] Installing libnghttp2-0:1.66. 100% | 194.4 MiB/s | 199.1 KiB | 00m00s [130/172] Installing keyutils-libs-0:1. 100% | 97.4 MiB/s | 99.8 KiB | 00m00s [131/172] Installing libcom_err-0:1.47. 100% | 109.5 MiB/s | 112.2 KiB | 00m00s [132/172] Installing libverto-0:0.3.2-1 100% | 69.5 MiB/s | 71.2 KiB | 00m00s [133/172] Installing krb5-libs-0:1.21.3 100% | 230.2 MiB/s | 2.5 MiB | 00m00s [134/172] Installing libssh-0:0.11.3-1. 100% | 191.7 MiB/s | 589.1 KiB | 00m00s [135/172] Installing libbrotli-0:1.2.0- 100% | 222.6 MiB/s | 911.8 KiB | 00m00s [136/172] Installing libcurl-0:8.15.0-5 100% | 223.7 MiB/s | 916.2 KiB | 00m00s [137/172] Installing curl-0:8.15.0-5.fc 100% | 16.0 MiB/s | 460.1 KiB | 00m00s [138/172] Installing rpm-0:6.0.1-1.fc43 100% | 58.7 MiB/s | 2.8 MiB | 00m00s [139/172] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.1 KiB | 00m00s [140/172] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [141/172] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [142/172] Installing tree-sitter-srpm-m 100% | 9.1 MiB/s | 9.3 KiB | 00m00s [143/172] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [144/172] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [145/172] Installing elfutils-default-y 100% | 340.5 KiB/s | 2.0 KiB | 00m00s [146/172] Installing elfutils-libs-0:0. 100% | 182.7 MiB/s | 748.5 KiB | 00m00s [147/172] Installing elfutils-debuginfo 100% | 7.5 MiB/s | 146.3 KiB | 00m00s [148/172] Installing elfutils-0:0.194-1 100% | 118.6 MiB/s | 3.2 MiB | 00m00s [149/172] Installing binutils-0:2.45.1- 100% | 274.5 MiB/s | 31.0 MiB | 00m00s [150/172] Installing gdb-minimal-0:17.1 100% | 230.2 MiB/s | 13.4 MiB | 00m00s [151/172] Installing debugedit-0:5.2-3. 100% | 17.4 MiB/s | 321.2 KiB | 00m00s [152/172] Installing rpm-build-libs-0:6 100% | 129.4 MiB/s | 265.0 KiB | 00m00s [153/172] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [154/172] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [155/172] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [156/172] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [157/172] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [158/172] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [159/172] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [160/172] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [161/172] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [162/172] Installing rpm-build-0:6.0.1- 100% | 29.7 MiB/s | 608.1 KiB | 00m00s [163/172] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [164/172] Installing redhat-rpm-config- 100% | 61.6 MiB/s | 189.1 KiB | 00m00s [165/172] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [166/172] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [167/172] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [168/172] Installing python-srpm-macros 100% | 25.8 MiB/s | 52.8 KiB | 00m00s [169/172] Installing util-linux-0:2.41. 100% | 127.1 MiB/s | 6.9 MiB | 00m00s [170/172] Installing shadow-utils-2:4.1 100% | 97.7 MiB/s | 4.5 MiB | 00m00s [171/172] Installing which-0:2.23-3.fc4 100% | 7.2 MiB/s | 125.6 KiB | 00m00s [172/172] Installing info-0:7.2-6.fc43. 100% | 185.1 KiB/s | 422.0 KiB | 00m02s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-2.fc43.aarch64 alternatives-1.33-3.fc43.aarch64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.3-1.fc43.aarch64 bash-5.3.0-2.fc43.aarch64 binutils-2.45.1-4.fc43.aarch64 build-reproducibility-srpm-macros-0.6.0-2.fc43.noarch bzip2-1.0.8-21.fc43.aarch64 bzip2-libs-1.0.8-21.fc43.aarch64 ca-certificates-2025.2.80_v9.0.304-1.1.fc43.noarch coreutils-9.7-7.fc43.aarch64 coreutils-common-9.7-7.fc43.aarch64 cpio-2.15-6.fc43.aarch64 crypto-policies-20251125-1.git63291f8.fc43.noarch curl-8.15.0-5.fc43.aarch64 cyrus-sasl-lib-2.1.28-33.fc43.aarch64 debugedit-5.2-3.fc43.aarch64 diffutils-3.12-3.fc43.aarch64 dwz-0.16-2.fc43.aarch64 ed-1.22.2-1.fc43.aarch64 efi-srpm-macros-6-4.fc43.noarch elfutils-0.194-1.fc43.aarch64 elfutils-debuginfod-client-0.194-1.fc43.aarch64 elfutils-default-yama-scope-0.194-1.fc43.noarch elfutils-libelf-0.194-1.fc43.aarch64 elfutils-libs-0.194-1.fc43.aarch64 fedora-gpg-keys-43-1.noarch fedora-release-43-26.noarch fedora-release-common-43-26.noarch fedora-release-identity-basic-43-26.noarch fedora-repos-43-1.noarch file-5.46-8.fc43.aarch64 file-libs-5.46-8.fc43.aarch64 filesystem-3.18-50.fc43.aarch64 filesystem-srpm-macros-3.18-50.fc43.noarch findutils-4.10.0-6.fc43.aarch64 fonts-srpm-macros-2.0.5-23.fc43.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-2-1.fc43.noarch gawk-5.3.2-2.fc43.aarch64 gdb-minimal-17.1-1.fc43.aarch64 gdbm-libs-1.23-10.fc43.aarch64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42-9.fc43.aarch64 glibc-common-2.42-9.fc43.aarch64 glibc-gconv-extra-2.42-9.fc43.aarch64 glibc-minimal-langpack-2.42-9.fc43.aarch64 gmp-6.3.0-4.fc43.aarch64 gnat-srpm-macros-7-1.fc43.noarch gnulib-l10n-20241231-1.fc43.noarch gnupg2-2.4.9-5.fc43.aarch64 gnupg2-dirmngr-2.4.9-5.fc43.aarch64 gnupg2-gpg-agent-2.4.9-5.fc43.aarch64 gnupg2-gpgconf-2.4.9-5.fc43.aarch64 gnupg2-keyboxd-2.4.9-5.fc43.aarch64 gnupg2-verify-2.4.9-5.fc43.aarch64 gnutls-3.8.11-5.fc43.aarch64 go-srpm-macros-3.8.0-1.fc43.noarch gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc43.aarch64 gzip-1.13-4.fc43.aarch64 ima-evm-utils-libs-1.6.2-6.fc43.aarch64 info-7.2-6.fc43.aarch64 jansson-2.14-3.fc43.aarch64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc43.aarch64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc43.aarch64 krb5-libs-1.21.3-7.fc43.aarch64 libacl-2.3.2-4.fc43.aarch64 libarchive-3.8.4-1.fc43.aarch64 libassuan-2.5.7-4.fc43.aarch64 libattr-2.5.2-6.fc43.aarch64 libblkid-2.41.3-7.fc43.aarch64 libbrotli-1.2.0-1.fc43.aarch64 libcap-2.76-3.fc43.aarch64 libcap-ng-0.9-7.fc43.aarch64 libcom_err-1.47.3-2.fc43.aarch64 libcurl-8.15.0-5.fc43.aarch64 libeconf-0.7.9-2.fc43.aarch64 libevent-2.1.12-16.fc43.aarch64 libfdisk-2.41.3-7.fc43.aarch64 libffi-3.5.2-1.fc43.aarch64 libfsverity-1.6-3.fc43.aarch64 libgcc-15.2.1-7.fc43.aarch64 libgcrypt-1.11.1-3.fc43.aarch64 libgomp-15.2.1-7.fc43.aarch64 libgpg-error-1.55-2.fc43.aarch64 libidn2-2.3.8-2.fc43.aarch64 libksba-1.6.7-4.fc43.aarch64 liblastlog2-2.41.3-7.fc43.aarch64 libmount-2.41.3-7.fc43.aarch64 libnghttp2-1.66.0-2.fc43.aarch64 libpkgconf-2.3.0-3.fc43.aarch64 libpsl-0.21.5-6.fc43.aarch64 libselinux-3.9-5.fc43.aarch64 libsemanage-3.9-4.fc43.aarch64 libsepol-3.9-2.fc43.aarch64 libsmartcols-2.41.3-7.fc43.aarch64 libssh-0.11.3-1.fc43.aarch64 libssh-config-0.11.3-1.fc43.noarch libstdc++-15.2.1-7.fc43.aarch64 libtasn1-4.20.0-2.fc43.aarch64 libtool-ltdl-2.5.4-8.fc43.aarch64 libunistring-1.1-10.fc43.aarch64 libusb1-1.0.29-4.fc43.aarch64 libuuid-2.41.3-7.fc43.aarch64 libverto-0.3.2-11.fc43.aarch64 libxcrypt-4.5.2-1.fc43.aarch64 libxml2-2.12.10-5.fc43.aarch64 libzstd-1.5.7-2.fc43.aarch64 lua-libs-5.4.8-4.fc43.aarch64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc43.aarch64 mpfr-4.2.2-2.fc43.aarch64 ncurses-base-6.5-7.20250614.fc43.noarch ncurses-libs-6.5-7.20250614.fc43.aarch64 nettle-3.10.1-2.fc43.aarch64 npth-1.8-3.fc43.aarch64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.10-4.fc43.aarch64 openssl-libs-3.5.4-2.fc43.aarch64 p11-kit-0.25.8-1.fc43.aarch64 p11-kit-trust-0.25.8-1.fc43.aarch64 package-notes-srpm-macros-0.5-14.fc43.noarch pam-libs-1.7.1-4.fc43.aarch64 patch-2.8-2.fc43.aarch64 pcre2-10.47-1.fc43.aarch64 pcre2-syntax-10.47-1.fc43.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc43.aarch64 pkgconf-m4-2.3.0-3.fc43.noarch pkgconf-pkg-config-2.3.0-3.fc43.aarch64 popt-1.19-9.fc43.aarch64 publicsuffix-list-dafsa-20260116-1.fc43.noarch pyproject-srpm-macros-1.18.6-1.fc43.noarch python-srpm-macros-3.14-5.fc43.noarch qt5-srpm-macros-5.15.18-1.fc43.noarch qt6-srpm-macros-6.10.1-1.fc43.noarch readline-8.3-2.fc43.aarch64 redhat-rpm-config-343-11.fc43.noarch rpm-6.0.1-1.fc43.aarch64 rpm-build-6.0.1-1.fc43.aarch64 rpm-build-libs-6.0.1-1.fc43.aarch64 rpm-libs-6.0.1-1.fc43.aarch64 rpm-sequoia-1.10.0-1.fc43.aarch64 rpm-sign-libs-6.0.1-1.fc43.aarch64 rust-srpm-macros-28.4-1.fc43.noarch sed-4.9-5.fc43.aarch64 setup-2.15.0-26.fc43.noarch shadow-utils-4.18.0-3.fc43.aarch64 sqlite-libs-3.50.2-2.fc43.aarch64 systemd-libs-258.3-3.fc43.aarch64 systemd-standalone-sysusers-258.3-3.fc43.aarch64 tar-1.35-6.fc43.aarch64 tpm2-tss-4.1.3-8.fc43.aarch64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-67.fc43.aarch64 util-linux-2.41.3-7.fc43.aarch64 util-linux-core-2.41.3-7.fc43.aarch64 which-2.23-3.fc43.aarch64 xxhash-libs-0.8.3-3.fc43.aarch64 xz-5.8.1-4.fc43.aarch64 xz-libs-5.8.1-4.fc43.aarch64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.aarch64 zlib-ng-compat-2.3.2-2.fc43.aarch64 zstd-1.5.7-2.fc43.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1767484800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-1.fc43.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-43-aarch64-1770510917.736673/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-qd6__2eb/mrtrix3/mrtrix3.spec) Config(child) 0 minutes 30 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-1.fc43.src.rpm) Config(fedora-43-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-bootstrap-1770510917.736673/root. INFO: reusing tmpfs at /var/lib/mock/fedora-43-aarch64-bootstrap-1770510917.736673/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-1770510917.736673/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc43.aarch64 rpm-sequoia-1.10.0-1.fc43.aarch64 dnf5-5.2.17.0-2.fc43.aarch64 dnf5-plugins-5.2.17.0-2.fc43.aarch64 Finish: chroot init Start: build phase for mrtrix3-3.0.8-1.fc43.src.rpm Start: build setup for mrtrix3-3.0.8-1.fc43.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1767484800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-1.fc43.src.rpm Updating and loading repositories: Copr repository 100% | 1.3 KiB/s | 1.5 KiB | 00m01s fedora 100% | 10.7 KiB/s | 14.3 KiB | 00m01s updates 100% | 3.5 KiB/s | 4.5 KiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing: eigen3-devel noarch 3.4.0-18.fc43 fedora 8.4 MiB fftw-devel aarch64 3.3.10-16.fc43 fedora 283.0 KiB gcc-c++ aarch64 15.2.1-7.fc43 updates 38.9 MiB git aarch64 2.53.0-1.fc43 updates 56.4 KiB libpng-devel aarch64 2:1.6.53-1.fc43 updates 958.6 KiB libtiff-devel aarch64 4.7.1-1.fc43 updates 805.0 KiB mesa-libGL-devel aarch64 25.3.4-7.fc43 updates 80.8 KiB mesa-libGLU-devel aarch64 9.0.3-7.fc43 fedora 17.0 KiB python3 aarch64 3.14.2-1.fc43 updates 84.8 KiB python3-devel aarch64 3.14.2-1.fc43 updates 1.9 MiB qt5-qtbase-devel aarch64 5.15.18-1.fc43 updates 19.2 MiB qt5-qtsvg-devel aarch64 5.15.18-1.fc43 updates 83.5 KiB zlib-ng-compat-devel aarch64 2.3.2-2.fc43 updates 107.0 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-15.fc43 fedora 192.7 KiB annobin-docs noarch 12.99-1.fc43 fedora 98.9 KiB annobin-plugin-gcc aarch64 12.99-1.fc43 fedora 1.0 MiB avahi-libs aarch64 0.9~rc2-6.fc43 fedora 230.4 KiB cmake aarch64 3.31.10-3.fc43 updates 29.7 MiB cmake-data noarch 3.31.10-3.fc43 updates 8.5 MiB cmake-filesystem aarch64 3.31.10-3.fc43 updates 0.0 B cmake-rpm-macros noarch 3.31.10-3.fc43 updates 8.2 KiB cpp aarch64 15.2.1-7.fc43 updates 35.5 MiB cups-filesystem noarch 1:2.4.16-4.fc43 updates 0.0 B cups-libs aarch64 1:2.4.16-4.fc43 updates 666.9 KiB dbus-libs aarch64 1:1.16.0-4.fc43 fedora 397.8 KiB default-fonts-core-sans noarch 4.2-5.fc43 fedora 11.9 KiB double-conversion aarch64 3.4.0-1.fc43 updates 141.2 KiB duktape aarch64 2.7.0-10.fc43 fedora 671.9 KiB emacs-filesystem noarch 1:30.0-5.fc43 fedora 0.0 B expat aarch64 2.7.3-1.fc43 updates 361.0 KiB fftw aarch64 3.3.10-16.fc43 fedora 221.3 KiB fftw-libs aarch64 3.3.10-16.fc43 fedora 0.0 B fftw-libs-double aarch64 3.3.10-16.fc43 fedora 1.8 MiB fftw-libs-long aarch64 3.3.10-16.fc43 fedora 2.2 MiB fftw-libs-single aarch64 3.3.10-16.fc43 fedora 1.9 MiB fontconfig aarch64 2.17.0-3.fc43 fedora 1.2 MiB fonts-filesystem noarch 1:2.0.5-23.fc43 fedora 0.0 B freetype aarch64 2.13.3-3.fc43 fedora 814.5 KiB gcc aarch64 15.2.1-7.fc43 updates 99.6 MiB gcc-plugin-annobin aarch64 15.2.1-7.fc43 updates 69.2 KiB git-core aarch64 2.53.0-1.fc43 updates 23.8 MiB git-core-doc noarch 2.53.0-1.fc43 updates 18.6 MiB glib2 aarch64 2.86.3-1.fc43 updates 15.5 MiB glibc-devel aarch64 2.42-9.fc43 updates 2.2 MiB glx-utils aarch64 9.0.0-10.fc43 fedora 590.6 KiB google-noto-fonts-common noarch 20251101-2.fc43 updates 17.7 KiB google-noto-sans-vf-fonts noarch 20251101-2.fc43 updates 1.4 MiB graphite2 aarch64 1.3.14-19.fc43 fedora 239.6 KiB groff-base aarch64 1.23.0-11.fc43 updates 4.2 MiB harfbuzz aarch64 11.5.1-2.fc43 updates 2.7 MiB hwdata noarch 0.403-1.fc43 updates 9.8 MiB jbigkit-libs aarch64 2.1-32.fc43 fedora 181.5 KiB jsoncpp aarch64 1.9.6-2.fc43 fedora 271.8 KiB kernel-headers aarch64 6.18.3-200.fc43 updates 6.7 MiB less aarch64 679-2.fc43 fedora 554.0 KiB libICE aarch64 1.1.2-3.fc43 fedora 222.4 KiB libSM aarch64 1.2.5-3.fc43 fedora 129.1 KiB libX11 aarch64 1.8.12-1.fc43 fedora 1.3 MiB libX11-common noarch 1.8.12-1.fc43 fedora 1.2 MiB libX11-devel aarch64 1.8.12-1.fc43 fedora 1.0 MiB libX11-xcb aarch64 1.8.12-1.fc43 fedora 67.0 KiB libXau aarch64 1.0.12-3.fc43 fedora 121.0 KiB libXau-devel aarch64 1.0.12-3.fc43 fedora 7.5 KiB libXext aarch64 1.3.6-4.fc43 fedora 145.9 KiB libXxf86vm aarch64 1.1.6-3.fc43 fedora 69.3 KiB libasan aarch64 15.2.1-7.fc43 updates 1.5 MiB libatomic aarch64 15.2.1-7.fc43 updates 68.8 KiB libcbor aarch64 0.12.0-6.fc43 fedora 137.9 KiB libdrm aarch64 2.4.131-1.fc43 updates 764.2 KiB libdrm-devel aarch64 2.4.131-1.fc43 updates 789.0 KiB libedit aarch64 3.1-57.20251016cvs.fc43 updates 280.2 KiB libevdev aarch64 1.13.6-1.fc43 updates 134.1 KiB libfido2 aarch64 1.16.0-3.fc43 fedora 278.7 KiB libglvnd aarch64 1:1.7.0-8.fc43 fedora 1.3 MiB libglvnd-core-devel aarch64 1:1.7.0-8.fc43 fedora 40.3 KiB libglvnd-devel aarch64 1:1.7.0-8.fc43 fedora 2.1 MiB libglvnd-egl aarch64 1:1.7.0-8.fc43 fedora 68.8 KiB libglvnd-gles aarch64 1:1.7.0-8.fc43 fedora 394.2 KiB libglvnd-glx aarch64 1:1.7.0-8.fc43 fedora 1.0 MiB libglvnd-opengl aarch64 1:1.7.0-8.fc43 fedora 329.2 KiB libgudev aarch64 238-8.fc43 fedora 103.8 KiB libicu aarch64 77.1-1.fc43 fedora 36.5 MiB libinput aarch64 1.30.1-1.fc43 updates 945.4 KiB libjpeg-turbo aarch64 3.1.2-1.fc43 fedora 740.4 KiB libjpeg-turbo-devel aarch64 3.1.2-1.fc43 fedora 353.9 KiB liblerc aarch64 4.0.0-9.fc43 fedora 546.5 KiB liblerc-devel aarch64 4.0.0-9.fc43 fedora 4.3 MiB libmpc aarch64 1.3.1-8.fc43 fedora 152.7 KiB libpciaccess aarch64 0.16-16.fc43 fedora 72.5 KiB libpciaccess-devel aarch64 0.16-16.fc43 fedora 15.3 KiB libpng aarch64 2:1.6.53-1.fc43 updates 269.9 KiB libproxy aarch64 0.5.12-1.fc43 updates 166.3 KiB libstdc++-devel aarch64 15.2.1-7.fc43 updates 36.4 MiB libtiff aarch64 4.7.1-1.fc43 updates 659.3 KiB libubsan aarch64 15.2.1-7.fc43 updates 475.6 KiB libuv aarch64 1:1.51.0-2.fc43 fedora 605.4 KiB libwacom aarch64 2.18.0-1.fc43 updates 149.9 KiB libwacom-data noarch 2.18.0-1.fc43 updates 1.4 MiB libwayland-client aarch64 1.24.0-1.fc43 fedora 70.1 KiB libwebp aarch64 1.6.0-2.fc43 fedora 817.5 KiB libwebp-devel aarch64 1.6.0-2.fc43 fedora 121.7 KiB libxcb aarch64 1.17.0-6.fc43 fedora 2.2 MiB libxcb-devel aarch64 1.17.0-6.fc43 fedora 2.7 MiB libxcrypt-devel aarch64 4.5.2-1.fc43 updates 31.1 KiB libxkbcommon aarch64 1.11.0-1.fc43 fedora 471.5 KiB libxkbcommon-x11 aarch64 1.11.0-1.fc43 fedora 67.6 KiB libxshmfence aarch64 1.3.2-7.fc43 fedora 68.5 KiB libzstd-devel aarch64 1.5.7-2.fc43 fedora 208.0 KiB llvm-filesystem aarch64 21.1.8-4.fc43 updates 0.0 B llvm-libs aarch64 21.1.8-4.fc43 updates 132.8 MiB lm_sensors-libs aarch64 3.6.0-23.fc43 fedora 93.8 KiB make aarch64 1:4.4.1-11.fc43 fedora 1.8 MiB mesa-dri-drivers aarch64 25.3.4-7.fc43 updates 36.6 MiB mesa-filesystem aarch64 25.3.4-7.fc43 updates 3.6 KiB mesa-libEGL aarch64 25.3.4-7.fc43 updates 330.3 KiB mesa-libGL aarch64 25.3.4-7.fc43 updates 334.0 KiB mesa-libGLU aarch64 9.0.3-7.fc43 fedora 329.5 KiB mesa-libgbm aarch64 25.3.4-7.fc43 updates 67.8 KiB mpdecimal aarch64 4.0.1-2.fc43 fedora 281.2 KiB mtdev aarch64 1.1.6-11.fc43 fedora 69.2 KiB ncurses aarch64 6.5-7.20250614.fc43 fedora 893.6 KiB openssh aarch64 10.0p1-6.fc43 updates 1.4 MiB openssh-clients aarch64 10.0p1-6.fc43 updates 2.7 MiB pcre2-utf16 aarch64 10.47-1.fc43 updates 583.0 KiB perl-AutoLoader noarch 5.74-520.fc43 fedora 20.6 KiB perl-B aarch64 1.89-520.fc43 fedora 545.4 KiB perl-Carp noarch 1.54-520.fc43 fedora 46.6 KiB perl-Class-Struct noarch 0.68-520.fc43 fedora 25.4 KiB perl-Data-Dumper aarch64 2.191-521.fc43 fedora 135.7 KiB perl-Digest noarch 1.20-520.fc43 fedora 35.3 KiB perl-Digest-MD5 aarch64 2.59-520.fc43 fedora 103.7 KiB perl-DynaLoader aarch64 1.57-520.fc43 fedora 32.1 KiB perl-Encode aarch64 4:3.21-520.fc43 fedora 4.8 MiB perl-English noarch 1.11-520.fc43 fedora 6.2 KiB perl-Errno aarch64 1.38-520.fc43 fedora 8.4 KiB perl-Error noarch 1:0.17030-2.fc43 fedora 76.7 KiB perl-Exporter noarch 5.79-520.fc43 fedora 54.3 KiB perl-Fcntl aarch64 1.20-520.fc43 fedora 92.8 KiB perl-File-Basename noarch 2.86-520.fc43 fedora 14.0 KiB perl-File-Find noarch 1.44-520.fc43 fedora 42.0 KiB perl-File-Path noarch 2.18-520.fc43 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.100-520.fc43 fedora 162.3 KiB perl-File-stat noarch 1.14-520.fc43 fedora 12.5 KiB perl-FileHandle noarch 2.05-520.fc43 fedora 9.4 KiB perl-Getopt-Long noarch 1:2.58-520.fc43 fedora 144.5 KiB perl-Getopt-Std noarch 1.14-520.fc43 fedora 11.2 KiB perl-Git noarch 2.53.0-1.fc43 updates 64.4 KiB perl-HTTP-Tiny noarch 0.090-521.fc43 fedora 154.4 KiB perl-IO aarch64 1.55-520.fc43 fedora 191.4 KiB perl-IO-Socket-IP noarch 0.43-521.fc43 fedora 100.3 KiB perl-IO-Socket-SSL noarch 2.095-2.fc43 fedora 714.5 KiB perl-IPC-Open3 noarch 1.24-520.fc43 fedora 27.7 KiB perl-MIME-Base32 noarch 1.303-24.fc43 fedora 30.7 KiB perl-MIME-Base64 aarch64 3.16-520.fc43 fedora 94.1 KiB perl-Net-SSLeay aarch64 1.94-11.fc43 fedora 1.4 MiB perl-POSIX aarch64 2.23-520.fc43 fedora 263.5 KiB perl-PathTools aarch64 3.94-520.fc43 fedora 224.0 KiB perl-Pod-Escapes noarch 1:1.07-520.fc43 fedora 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-521.fc43 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.47-3.fc43 fedora 565.3 KiB perl-Pod-Usage noarch 4:2.05-520.fc43 fedora 86.3 KiB perl-Scalar-List-Utils aarch64 5:1.70-1.fc43 fedora 152.9 KiB perl-SelectSaver noarch 1.02-520.fc43 fedora 2.2 KiB perl-Socket aarch64 4:2.040-2.fc43 fedora 144.3 KiB perl-Storable aarch64 1:3.37-521.fc43 fedora 243.2 KiB perl-Symbol noarch 1.09-520.fc43 fedora 6.8 KiB perl-Term-ANSIColor noarch 5.01-521.fc43 fedora 97.5 KiB perl-Term-Cap noarch 1.18-520.fc43 fedora 29.3 KiB perl-TermReadKey aarch64 2.38-26.fc43 fedora 108.0 KiB perl-Text-ParseWords noarch 3.31-520.fc43 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-520.fc43 fedora 22.6 KiB perl-Time-Local noarch 2:1.350-520.fc43 fedora 69.0 KiB perl-URI noarch 5.34-2.fc43 updates 268.0 KiB perl-base noarch 2.27-520.fc43 fedora 12.6 KiB perl-constant noarch 1.33-521.fc43 fedora 26.2 KiB perl-if noarch 0.61.000-520.fc43 fedora 5.8 KiB perl-interpreter aarch64 4:5.42.0-520.fc43 fedora 174.6 KiB perl-lib aarch64 0.65-520.fc43 fedora 8.5 KiB perl-libnet noarch 3.15-521.fc43 fedora 289.4 KiB perl-libs aarch64 4:5.42.0-520.fc43 fedora 11.6 MiB perl-locale noarch 1.13-520.fc43 fedora 6.1 KiB perl-mro aarch64 1.29-520.fc43 fedora 81.6 KiB perl-overload noarch 1.40-520.fc43 fedora 71.6 KiB perl-overloading noarch 0.02-520.fc43 fedora 4.9 KiB perl-parent noarch 1:0.244-520.fc43 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-520.fc43 fedora 317.5 KiB perl-vars noarch 1.05-520.fc43 fedora 3.9 KiB pyproject-rpm-macros noarch 1.18.6-1.fc43 updates 115.6 KiB python-pip-wheel noarch 25.1.1-18.fc43 fedora 1.2 MiB python-rpm-macros noarch 3.14-5.fc43 fedora 23.2 KiB python3-libs aarch64 3.14.2-1.fc43 updates 45.1 MiB python3-packaging noarch 25.0-7.fc43 fedora 607.4 KiB python3-rpm-generators noarch 14-13.fc43 fedora 81.7 KiB python3-rpm-macros noarch 3.14-5.fc43 fedora 6.5 KiB qt-settings noarch 43.1-2.fc43 updates 1.1 KiB qt5-filesystem aarch64 5.15.18-1.fc43 updates 0.0 B qt5-qtbase aarch64 5.15.18-1.fc43 updates 10.4 MiB qt5-qtbase-common noarch 5.15.18-1.fc43 updates 78.0 B qt5-qtbase-gui aarch64 5.15.18-1.fc43 updates 21.1 MiB qt5-qtsvg aarch64 5.15.18-1.fc43 updates 719.2 KiB qt5-rpm-macros noarch 5.15.18-1.fc43 updates 1.6 KiB rhash aarch64 1.4.5-3.fc43 fedora 394.8 KiB spirv-tools-libs aarch64 2025.4-1.fc43 updates 5.4 MiB tzdata noarch 2025c-1.fc43 updates 1.6 MiB vim-filesystem noarch 2:9.1.2128-2.fc43 updates 40.0 B vulkan-headers noarch 1.4.328.1-1.fc43 updates 31.8 MiB vulkan-loader aarch64 1.4.328.1-1.fc43 updates 612.4 KiB vulkan-loader-devel aarch64 1.4.328.1-1.fc43 updates 8.0 KiB xcb-util aarch64 0.4.1-8.fc43 fedora 70.3 KiB xcb-util-image aarch64 0.4.1-8.fc43 fedora 70.2 KiB xcb-util-keysyms aarch64 0.4.1-8.fc43 fedora 68.6 KiB xcb-util-renderutil aarch64 0.3.10-8.fc43 fedora 72.4 KiB xcb-util-wm aarch64 0.4.2-8.fc43 fedora 137.3 KiB xkeyboard-config noarch 2.46-1.fc43 updates 10.2 MiB xml-common noarch 0.6.3-67.fc43 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-5.fc43 fedora 1.7 MiB Transaction Summary: Installing: 216 packages Total size of inbound packages is 209 MiB. Need to download 209 MiB. After this operation, 781 MiB extra will be used (install 781 MiB, remove 0 B). [ 1/216] mesa-libGLU-devel-0:9.0.3-7.f 100% | 35.9 KiB/s | 11.8 KiB | 00m00s [ 2/216] fftw-devel-0:3.3.10-16.fc43.a 100% | 250.7 KiB/s | 132.6 KiB | 00m01s [ 3/216] git-0:2.53.0-1.fc43.aarch64 100% | 288.3 KiB/s | 40.7 KiB | 00m00s [ 4/216] eigen3-devel-0:3.4.0-18.fc43. 100% | 1.5 MiB/s | 1.2 MiB | 00m01s [ 5/216] gcc-c++-0:15.2.1-7.fc43.aarch 100% | 12.5 MiB/s | 14.0 MiB | 00m01s [ 6/216] mesa-libGL-devel-0:25.3.4-7.f 100% | 84.0 KiB/s | 27.0 KiB | 00m00s [ 7/216] libpng-devel-2:1.6.53-1.fc43. 100% | 261.9 KiB/s | 293.6 KiB | 00m01s [ 8/216] libtiff-devel-0:4.7.1-1.fc43. 100% | 281.2 KiB/s | 276.4 KiB | 00m01s [ 9/216] python3-0:3.14.2-1.fc43.aarch 100% | 903.4 KiB/s | 28.0 KiB | 00m00s [ 10/216] qt5-qtsvg-devel-0:5.15.18-1.f 100% | 84.0 KiB/s | 31.0 KiB | 00m00s [ 11/216] python3-devel-0:3.14.2-1.fc43 100% | 1.1 MiB/s | 436.0 KiB | 00m00s [ 12/216] fftw-0:3.3.10-16.fc43.aarch64 100% | 280.8 KiB/s | 40.4 KiB | 00m00s [ 13/216] fftw-libs-0:3.3.10-16.fc43.aa 100% | 106.6 KiB/s | 7.8 KiB | 00m00s [ 14/216] libglvnd-devel-1:1.7.0-8.fc43 100% | 1.1 MiB/s | 162.1 KiB | 00m00s [ 15/216] mesa-libGLU-0:9.0.3-7.fc43.aa 100% | 1.9 MiB/s | 152.1 KiB | 00m00s [ 16/216] qt5-qtbase-devel-0:5.15.18-1. 100% | 4.1 MiB/s | 3.4 MiB | 00m01s [ 17/216] libmpc-0:1.3.1-8.fc43.aarch64 100% | 1.1 MiB/s | 71.1 KiB | 00m00s [ 18/216] zlib-ng-compat-devel-0:2.3.2- 100% | 63.4 KiB/s | 38.0 KiB | 00m01s [ 19/216] perl-File-Basename-0:2.86-520 100% | 260.1 KiB/s | 17.2 KiB | 00m00s [ 20/216] perl-Getopt-Long-1:2.58-520.f 100% | 964.2 KiB/s | 63.6 KiB | 00m00s [ 21/216] perl-IPC-Open3-0:1.24-520.fc4 100% | 362.6 KiB/s | 23.9 KiB | 00m00s [ 22/216] perl-PathTools-0:3.94-520.fc4 100% | 1.3 MiB/s | 87.3 KiB | 00m00s [ 23/216] perl-TermReadKey-0:2.38-26.fc 100% | 536.9 KiB/s | 35.4 KiB | 00m00s [ 24/216] perl-interpreter-4:5.42.0-520 100% | 1.1 MiB/s | 72.4 KiB | 00m00s [ 25/216] perl-lib-0:0.65-520.fc43.aarc 100% | 226.0 KiB/s | 14.9 KiB | 00m00s [ 26/216] perl-libs-4:5.42.0-520.fc43.a 100% | 9.4 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100% | 383.9 KiB/s | 25.3 KiB | 00m00s [ 40/216] perl-File-Path-0:2.18-520.fc4 100% | 539.3 KiB/s | 35.1 KiB | 00m00s [ 41/216] perl-IO-0:1.55-520.fc43.aarch 100% | 1.2 MiB/s | 82.2 KiB | 00m00s [ 42/216] liblerc-devel-0:4.0.0-9.fc43. 100% | 4.8 MiB/s | 3.2 MiB | 00m01s [ 43/216] qt5-qtbase-0:5.15.18-1.fc43.a 100% | 7.6 MiB/s | 3.3 MiB | 00m00s [ 44/216] qt5-qtsvg-0:5.15.18-1.fc43.aa 100% | 397.9 KiB/s | 182.6 KiB | 00m00s [ 45/216] fftw-libs-long-0:3.3.10-16.fc 100% | 8.4 MiB/s | 722.7 KiB | 00m00s [ 46/216] fftw-libs-double-0:3.3.10-16. 100% | 2.5 MiB/s | 670.2 KiB | 00m00s [ 47/216] libX11-devel-0:1.8.12-1.fc43. 100% | 11.8 MiB/s | 1.0 MiB | 00m00s [ 48/216] libglvnd-1:1.7.0-8.fc43.aarch 100% | 1.6 MiB/s | 108.5 KiB | 00m00s [ 49/216] libglvnd-core-devel-1:1.7.0-8 100% | 273.4 KiB/s | 17.2 KiB | 00m00s [ 50/216] libglvnd-egl-1:1.7.0-8.fc43.a 100% | 548.7 KiB/s | 36.2 KiB | 00m00s [ 51/216] libglvnd-gles-1:1.7.0-8.fc43. 100% | 471.8 KiB/s | 30.2 KiB | 00m00s [ 52/216] libglvnd-glx-1:1.7.0-8.fc43.a 100% | 1.9 MiB/s | 129.3 KiB | 00m00s [ 53/216] libglvnd-opengl-1:1.7.0-8.fc4 100% | 625.7 KiB/s | 39.4 KiB | 00m00s [ 54/216] make-1:4.4.1-11.fc43.aarch64 100% | 8.5 MiB/s | 582.0 KiB | 00m00s [ 55/216] perl-Carp-0:1.54-520.fc43.noa 100% | 435.0 KiB/s | 28.7 KiB | 00m00s [ 56/216] fftw-libs-single-0:3.3.10-16. 100% | 1.5 MiB/s | 698.4 KiB | 00m00s [ 57/216] perl-Exporter-0:5.79-520.fc43 100% | 467.4 KiB/s | 30.9 KiB | 00m00s [ 58/216] perl-Pod-Usage-4:2.05-520.fc4 100% | 643.4 KiB/s | 40.5 KiB | 00m00s [ 59/216] perl-Text-ParseWords-0:3.31-5 100% | 247.7 KiB/s | 16.3 KiB | 00m00s [ 60/216] perl-base-0:2.27-520.fc43.noa 100% | 253.5 KiB/s | 16.2 KiB | 00m00s [ 61/216] perl-constant-0:1.33-521.fc43 100% | 345.0 KiB/s | 22.8 KiB | 00m00s [ 62/216] perl-overload-0:1.40-520.fc43 100% | 723.2 KiB/s | 45.6 KiB | 00m00s [ 63/216] perl-Fcntl-0:1.20-520.fc43.aa 100% | 449.6 KiB/s | 29.7 KiB | 00m00s [ 64/216] perl-POSIX-0:2.23-520.fc43.aa 100% | 1.5 MiB/s | 97.4 KiB | 00m00s [ 65/216] perl-Symbol-0:1.09-520.fc43.n 100% | 215.2 KiB/s | 14.2 KiB | 00m00s [ 66/216] cpp-0:15.2.1-7.fc43.aarch64 100% | 25.1 MiB/s | 11.8 MiB | 00m00s [ 67/216] perl-Errno-0:1.38-520.fc43.aa 100% | 236.6 KiB/s | 14.9 KiB | 00m00s [ 68/216] perl-Scalar-List-Utils-5:1.70 100% | 1.1 MiB/s | 73.0 KiB | 00m00s [ 69/216] perl-DynaLoader-0:1.57-520.fc 100% | 399.6 KiB/s | 26.0 KiB | 00m00s [ 70/216] perl-vars-0:1.05-520.fc43.noa 100% | 206.2 KiB/s | 13.0 KiB | 00m00s [ 71/216] perl-Encode-4:3.21-520.fc43.a 100% | 15.3 MiB/s | 1.0 MiB | 00m00s [ 72/216] less-0:679-2.fc43.aarch64 100% | 2.9 MiB/s | 194.9 KiB | 00m00s [ 73/216] perl-Error-1:0.17030-2.fc43.n 100% | 637.9 KiB/s | 40.2 KiB | 00m00s [ 74/216] libjpeg-turbo-0:3.1.2-1.fc43. 100% | 3.7 MiB/s | 251.9 KiB | 00m00s [ 75/216] liblerc-0:4.0.0-9.fc43.aarch6 100% | 2.9 MiB/s | 194.5 KiB | 00m00s [ 76/216] libwebp-0:1.6.0-2.fc43.aarch6 100% | 4.0 MiB/s | 260.4 KiB | 00m00s [ 77/216] jbigkit-libs-0:2.1-32.fc43.aa 100% | 692.7 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Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1767484800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-1.fc43.src.rpm Updating and loading repositories: Copr repository 100% | 3.6 KiB/s | 1.5 KiB | 00m00s fedora 100% | 23.4 KiB/s | 14.3 KiB | 00m01s updates 100% | 8.1 KiB/s | 4.5 KiB | 00m01s Repositories loaded. Package "eigen3-devel-3.4.0-18.fc43.noarch" is already installed. Package "fftw-devel-3.3.10-16.fc43.aarch64" is already installed. Package "gcc-c++-15.2.1-7.fc43.aarch64" is already installed. Package "git-2.53.0-1.fc43.aarch64" is already installed. Package "libpng-devel-2:1.6.53-1.fc43.aarch64" is already installed. Package "libtiff-devel-4.7.1-1.fc43.aarch64" is already installed. Package "mesa-libGL-devel-25.3.4-7.fc43.aarch64" is already installed. Package "mesa-libGLU-devel-9.0.3-7.fc43.aarch64" is already installed. Package "python3-3.14.2-1.fc43.aarch64" is already installed. Package "python3-devel-3.14.2-1.fc43.aarch64" is already installed. Package "qt5-qtbase-devel-5.15.18-1.fc43.aarch64" is already installed. Package "qt5-qtsvg-devel-5.15.18-1.fc43.aarch64" is already installed. Package "zlib-ng-compat-devel-2.3.2-2.fc43.aarch64" is already installed. Nothing to do. Finish: build setup for mrtrix3-3.0.8-1.fc43.src.rpm Start: rpmbuild mrtrix3-3.0.8-1.fc43.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1767484800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.FB3JOX Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.WKZrc4 + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + rm -rf mrtrix3-3.0.8 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/mrtrix3-3.0.8.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd mrtrix3-3.0.8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Dn5wA9 + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + sed -i 's|#!/usr/bin/env python|#!/usr/bin/python3|' configure build + export 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert' + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert' + export 'CXXFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export 'EIGEN_CFLAGS=-I /usr/include/eigen3 -std=c++14' + EIGEN_CFLAGS='-I /usr/include/eigen3 -std=c++14' + export 'LINKFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LINKFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export QMAKE=/usr/bin/qmake-qt5 + QMAKE=/usr/bin/qmake-qt5 + export MOC=/usr/bin/moc-qt5 + MOC=/usr/bin/moc-qt5 + export RCC=/usr/bin/rcc-qt5 + RCC=/usr/bin/rcc-qt5 + ./configure -noshared -nogui -openmp MRtrix build type requested: release version with nogui, noshared, openmp Detecting OS: linux Looking for compiler [g++]: g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7) Checking for C++11 compliance: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3.1.zlib-ng Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.7.1 Checking for PNG library: Header: 1.6.53; library: 1.6.53 Checking for FFTW library: fftw-3.3.10-neon Checking for OpenMP support: ok writing configuration to file './config': ok + ./build /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:540: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (config_file, mode='r', encoding='utf-8') as f: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:1023: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (current_file, mode='r', encoding='utf-8') as fd: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:857: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (modify_path (self.name, strip=cpp_suffix, add=h_suffix), mode='r', encoding='utf-8') as fd: ( 1/400) [CC] tmp/core/file/config.o ( 3/400) [CC] tmp/core/file/dicom/quick_scan.o ( 2/400) [CC] tmp/core/exception.o ( 4/400) [CC] tmp/core/math/zstatistic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/exception.cpp -o tmp/core/exception.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/exception.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 5/400) [CC] tmp/core/image_io/variable_scaling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/config.cpp -o tmp/core/file/config.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/file/config.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 6/400) [CC] tmp/core/image_io/ram.o ( 7/400) [CC] tmp/core/metadata/bids.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/zstatistic.cpp -o tmp/core/math/zstatistic.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/math/stats/typedefs.h:20, from ./core/math/zstatistic.h:24, from core/math/zstatistic.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 8/400) [CC] tmp/core/image_io/null.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/quick_scan.cpp -o tmp/core/file/dicom/quick_scan.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/dicom/quick_scan.h:21, from core/file/dicom/quick_scan.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 9/400) [CC] tmp/core/file/mmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/variable_scaling.cpp -o tmp/core/image_io/variable_scaling.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/variable_scaling.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 10/400) [CC] tmp/core/dwi/shells.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/metadata/bids.cpp -o tmp/core/metadata/bids.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from ./core/metadata/bids.h:21, from core/metadata/bids.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 11/400) [CC] tmp/core/algo/histogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/null.cpp -o tmp/core/image_io/null.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from ./core/image_io/null.h:20, from core/image_io/null.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 12/400) [CC] tmp/core/math/SH.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/mmap.cpp -o tmp/core/file/mmap.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/file/mmap.cpp:34: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 13/400) [CC] tmp/core/axes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/SH.cpp -o tmp/core/math/SH.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from core/math/SH.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 14/400) [CC] tmp/core/image_io/scratch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/axes.cpp -o tmp/core/axes.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/axes.h:24, from core/axes.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 15/400) [CC] tmp/core/file/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from ./core/image_io/scratch.h:20, from core/image_io/scratch.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 16/400) [CC] tmp/core/math/stats/fwe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/tiff.cpp -o tmp/core/file/tiff.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/tiff.h:22, from core/file/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 17/400) [CC] tmp/core/formats/mrtrix_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/algo/histogram.cpp -o tmp/core/algo/histogram.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/datatype.h:20, from ./core/image_helpers.h:20, from ./core/algo/histogram.h:22, from core/algo/histogram.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 18/400) [CC] tmp/core/image_io/mosaic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/stats/fwe.cpp -o tmp/core/math/stats/fwe.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/math/stats/typedefs.h:20, from ./core/math/stats/fwe.h:21, from core/math/stats/fwe.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 19/400) [CC] tmp/core/file/dicom/tree.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/mosaic.cpp -o tmp/core/image_io/mosaic.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/mosaic.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 20/400) [CC] tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/dwi/shells.cpp -o tmp/core/dwi/shells.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/dwi/shells.h:24, from core/dwi/shells.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 21/400) [CC] tmp/core/stride.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/mrtrix_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 22/400) [CC] tmp/core/header.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/tree.cpp -o tmp/core/file/dicom/tree.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/file/dicom/tree.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 23/400) [CC] tmp/core/dwi/gradient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/stride.cpp -o tmp/core/stride.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/stride.h:20, from core/stride.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 24/400) [CC] tmp/core/file/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/mgh.cpp -o tmp/core/file/mgh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/mgh.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 25/400) [CC] tmp/core/image_io/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/base.cpp -o tmp/core/image_io/base.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/image_io/base.h:25, from core/image_io/base.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 26/400) [CC] tmp/core/formats/nifti2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/nifti2.cpp -o tmp/core/formats/nifti2.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti2.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 27/400) [CC] tmp/core/file/ofstream.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/key_value.h:21, from ./core/file/json_utils.h:21, from core/file/json_utils.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 28/400) [CC] tmp/core/formats/mri.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/ofstream.cpp -o tmp/core/file/ofstream.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from core/file/ofstream.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 29/400) [CC] tmp/core/math/stats/shuffle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/dwi/gradient.cpp -o tmp/core/dwi/gradient.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/dwi/gradient.h:20, from core/dwi/gradient.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 30/400) [CC] tmp/core/image_io/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/header.cpp -o tmp/core/header.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/header.h:23, from core/header.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 31/400) [CC] tmp/core/file/name_parser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mri.cpp -o tmp/core/formats/mri.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/mri.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 32/400) [CC] tmp/core/file/dicom/image.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/pipe.cpp -o tmp/core/image_io/pipe.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/pipe.cpp:21: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 33/400) [CC] tmp/core/file/dicom/element.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/name_parser.cpp -o tmp/core/file/name_parser.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/name_parser.h:22, from core/file/name_parser.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 34/400) [CC] tmp/core/formats/mgz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/stats/shuffle.cpp -o tmp/core/math/stats/shuffle.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/shuffle.h:21, from core/math/stats/shuffle.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 35/400) [CC] tmp/core/image_io/default.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/element.cpp -o tmp/core/file/dicom/element.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/file/dicom/element.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 36/400) [CC] tmp/core/formats/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from core/file/dicom/image.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 37/400) [CC] tmp/core/file/nifti_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/default.cpp -o tmp/core/image_io/default.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/default.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 38/400) [CC] tmp/core/formats/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/tiff.cpp -o tmp/core/formats/tiff.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 39/400) [CC] tmp/core/formats/dicom.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/png.cpp -o tmp/core/formats/png.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/list.h:20, from core/formats/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 40/400) [CC] tmp/core/misc/bitset.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/misc/bitset.cpp -o tmp/core/misc/bitset.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/misc/bitset.h:24, from core/misc/bitset.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 41/400) [CC] tmp/core/signal_handler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mgz.cpp -o tmp/core/formats/mgz.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/mgz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 42/400) [CC] tmp/core/formats/nifti1_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/signal_handler.cpp -o tmp/core/signal_handler.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/signal_handler.cpp:25: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 43/400) [CC] tmp/core/version.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/dicom.cpp -o tmp/core/formats/dicom.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from core/formats/dicom.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 44/400) [CC] tmp/core/math/betainc.o ( 45/400) [CC] tmp/core/file/dicom/select_cmdline.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/betainc.cpp -o tmp/core/math/betainc.o: In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/SpecialFunctions:15, from ./core/math/betainc.h:21, from core/math/betainc.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 46/400) [CC] tmp/core/datatype.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti1_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 47/400) [CC] tmp/core/formats/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/nifti_utils.cpp -o tmp/core/file/nifti_utils.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/nifti_utils.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 48/400) [CC] tmp/core/formats/ram.o ( 49/400) [CC] tmp/core/math/erfinv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/datatype.cpp -o tmp/core/datatype.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/datatype.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 50/400) [CC] tmp/core/file/key_value.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/select_cmdline.cpp -o tmp/core/file/dicom/select_cmdline.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/datatype.h:20, from ./core/file/dicom/image.h:22, from core/file/dicom/select_cmdline.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 51/400) [CC] tmp/core/formats/mrtrix_sparse_legacy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/list.cpp -o tmp/core/formats/list.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/list.h:20, from core/formats/list.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 52/400) [CC] tmp/core/math/stats/import.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/erfinv.cpp -o tmp/core/math/erfinv.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/erfinv.h:18, from core/math/erfinv.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 53/400) [CC] tmp/core/formats/mrtrix_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/key_value.cpp -o tmp/core/file/key_value.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/file/key_value.h:21, from core/file/key_value.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 54/400) [CC] tmp/core/formats/xds.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/stats/import.cpp -o tmp/core/math/stats/import.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/math/stats/import.h:24, from core/math/stats/import.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 55/400) [CC] tmp/core/adapter/reslice.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/adapter/reslice.cpp -o tmp/core/adapter/reslice.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/adapter/reslice.h:22, from core/adapter/reslice.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 56/400) [CC] tmp/core/app.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/xds.cpp -o tmp/core/formats/xds.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from core/formats/xds.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 57/400) [CC] tmp/core/metadata/slice_encoding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mrtrix_utils.cpp -o tmp/core/formats/mrtrix_utils.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/formats/mrtrix_utils.h:20, from core/formats/mrtrix_utils.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 58/400) [CC] tmp/src/exec_version.o ( 59/400) [CC] tmp/core/progressbar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mrtrix_sparse_legacy.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 60/400) [CC] tmp/core/math/bessel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/progressbar.cpp -o tmp/core/progressbar.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/progressbar.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 61/400) [CC] tmp/core/file/dicom/dict.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/bessel.cpp -o tmp/core/math/bessel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/chebyshev.h:20, from ./core/math/bessel.h:22, from core/math/bessel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 62/400) [CC] tmp/core/image_io/fetch_store.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/metadata/slice_encoding.cpp -o tmp/core/metadata/slice_encoding.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/metadata/slice_encoding.h:22, from core/metadata/slice_encoding.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 63/400) [CC] tmp/core/image_io/gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from ./core/file/dicom/element.h:23, from core/file/dicom/dict.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 64/400) [CC] tmp/core/math/stats/glm.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/gz.cpp -o tmp/core/image_io/gz.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from core/image_io/gz.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 65/400) [CC] tmp/core/formats/mgh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from ./core/image_io/fetch_store.h:20, from core/image_io/fetch_store.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 66/400) [CC] tmp/core/filter/connected_components.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/app.cpp -o tmp/core/app.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/app.cpp:24: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 67/400) [CC] tmp/core/image_io/tiff.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/tiff.cpp -o tmp/core/image_io/tiff.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/tiff.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 68/400) [CC] tmp/core/stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/filter/connected_components.cpp -o tmp/core/filter/connected_components.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/filter/connected_components.h:21, from core/filter/connected_components.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 69/400) [CC] tmp/core/file/dicom/study.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/stats.cpp -o tmp/core/stats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/stats.h:21, from core/stats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 70/400) [CC] tmp/core/formats/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mgh.cpp -o tmp/core/formats/mgh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mgh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 71/400) [CC] tmp/core/formats/nifti1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/study.cpp -o tmp/core/file/dicom/study.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from ./core/file/dicom/study.h:21, from ./core/file/dicom/patient.h:21, from core/file/dicom/study.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 72/400) [CC] tmp/core/formats/nifti2_gz.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti1.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 73/400) [CC] tmp/core/thread.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/nifti2_gz.cpp -o tmp/core/formats/nifti2_gz.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/nifti_utils.h:20, from core/formats/nifti2_gz.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 74/400) [CC] tmp/core/image_io/sparse.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/thread.cpp -o tmp/core/thread.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/cmdline_option.h:28, from core/app.h:29, from core/thread.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 75/400) [CC] tmp/core/file/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/mrtrix.cpp -o tmp/core/formats/mrtrix.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/formats/mrtrix.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 76/400) [CC] tmp/core/file/dicom/series.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/series.cpp -o tmp/core/file/dicom/series.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from core/file/dicom/series.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 77/400) [CC] tmp/cmd/warpinvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/sparse.cpp -o tmp/core/image_io/sparse.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/image_io/sparse.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 78/400) [CC] tmp/core/file/dicom/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/png.cpp -o tmp/core/file/png.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/file/png.h:24, from core/file/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 79/400) [CC] tmp/core/formats/pipe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/pipe.cpp -o tmp/core/formats/pipe.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/file/utils.h:26, from core/formats/pipe.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 80/400) [CC] tmp/core/metadata/phase_encoding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/mapper.cpp -o tmp/core/file/dicom/mapper.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from core/file/dicom/mapper.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 81/400) [CC] tmp/core/math/average_space.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/warpinvert.cpp -o tmp/cmd/warpinvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpinvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 82/400) [CC] tmp/core/formats/par.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/metadata/phase_encoding.cpp -o tmp/core/metadata/phase_encoding.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from ./core/metadata/phase_encoding.h:20, from core/metadata/phase_encoding.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 83/400) [CC] tmp/core/mrtrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/mrtrix.cpp -o tmp/core/mrtrix.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from core/types.h:78, from core/mrtrix.h:37, from core/mrtrix.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 84/400) [CC] tmp/core/file/dicom/patient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/file/dicom/patient.cpp -o tmp/core/file/dicom/patient.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/file/dicom/series.h:21, from ./core/file/dicom/study.h:21, from ./core/file/dicom/patient.h:21, from core/file/dicom/patient.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 85/400) [CC] tmp/core/image_io/png.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/formats/par.cpp -o tmp/core/formats/par.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/config.h:21, from core/formats/par.cpp:24: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 86/400) [CC] tmp/cmd/warpinit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/image_io/png.cpp -o tmp/core/image_io/png.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/image_io/png.h:22, from core/image_io/png.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 87/400) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/warpinit.cpp -o tmp/cmd/warpinit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpinit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 88/400) [CC] tmp/cmd/warpconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 89/400) [CC] tmp/cmd/warp2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/warpconvert.cpp -o tmp/cmd/warpconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 90/400) [CC] tmp/src/surface/polygon.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/polygon.cpp -o tmp/src/surface/polygon.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from src/surface/polygon.h:25, from src/surface/polygon.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 91/400) [CC] tmp/src/surface/mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/warp2metric.cpp -o tmp/cmd/warp2metric.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warp2metric.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 92/400) [CC] tmp/src/connectome/lut.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/connectome/lut.cpp -o tmp/src/connectome/lut.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/connectome/lut.h:23, from src/connectome/lut.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 93/400) [CC] tmp/src/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/mesh.cpp -o tmp/src/surface/mesh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/mesh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 94/400) [CC] tmp/src/surface/freesurfer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/raw.h:25, from src/surface/freesurfer.h:23, from src/surface/freesurfer.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 95/400) [CC] tmp/src/surface/scalar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from src/connectome/connectome.h:21, from src/connectome/connectome.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 96/400) [CC] tmp/cmd/voxel2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/average_space.cpp -o tmp/core/math/average_space.o: In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/MatrixFunctions:17, from ./core/math/average_space.h:20, from core/math/average_space.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 97/400) [CC] tmp/cmd/voxel2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/scalar.cpp -o tmp/src/surface/scalar.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/scalar.h:21, from src/surface/scalar.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 98/400) [CC] tmp/cmd/vectorstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/vectorstats.cpp -o tmp/cmd/vectorstats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/vectorstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ ( 99/400) [CC] tmp/src/stats/permtest.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/voxel2fixel.cpp -o tmp/cmd/voxel2fixel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/voxel2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (100/400) [CC] tmp/src/dwi/tractography/seeding/list.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/voxel2mesh.cpp -o tmp/cmd/voxel2mesh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/voxel2mesh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (101/400) [CC] tmp/src/dwi/tractography/file_base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/seeding/list.cpp -o tmp/src/dwi/tractography/seeding/list.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/seeding/list.h:21, from src/dwi/tractography/seeding/list.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (102/400) [CC] tmp/src/dwi/tractography/rng.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/math/rng.h:27, from src/dwi/tractography/rng.h:20, from src/dwi/tractography/rng.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (103/400) [CC] tmp/src/dwi/tractography/properties.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/file_base.h:24, from src/dwi/tractography/file_base.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (104/400) [CC] tmp/cmd/tsfvalidate.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/stats/permtest.cpp -o tmp/src/stats/permtest.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/stats/permtest.h:23, from src/stats/permtest.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (105/400) [CC] tmp/src/dwi/tractography/roi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/properties.cpp -o tmp/src/dwi/tractography/properties.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/properties.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (106/400) [CC] tmp/cmd/tsfthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfvalidate.cpp -o tmp/cmd/tsfvalidate.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfvalidate.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (107/400) [CC] tmp/cmd/tsfsmooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfthreshold.cpp -o tmp/cmd/tsfthreshold.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfthreshold.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (108/400) [CC] tmp/cmd/tsfmult.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/roi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (109/400) [CC] tmp/cmd/tsfinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfsmooth.cpp -o tmp/cmd/tsfsmooth.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfsmooth.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (110/400) [CC] tmp/cmd/tsfdivide.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfmult.cpp -o tmp/cmd/tsfmult.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfmult.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (111/400) [CC] tmp/cmd/transformconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfinfo.cpp -o tmp/cmd/tsfinfo.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfinfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (112/400) [CC] tmp/cmd/transformcompose.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tsfdivide.cpp -o tmp/cmd/tsfdivide.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tsfdivide.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (113/400) [CC] tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/transformconvert.cpp -o tmp/cmd/transformconvert.o: In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/MatrixFunctions:17, from cmd/transformconvert.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (114/400) [CC] tmp/cmd/tensor2metric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/transformcompose.cpp -o tmp/cmd/transformcompose.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/transformcompose.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (115/400) [CC] tmp/cmd/tcktransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tensor2metric.cpp -o tmp/cmd/tensor2metric.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tensor2metric.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (116/400) [CC] tmp/cmd/tckstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 core/math/stats/glm.cpp -o tmp/core/math/stats/glm.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/stats/glm.h:20, from core/math/stats/glm.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (117/400) [LB] bin/warpinvert g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tcktransform.cpp -o tmp/cmd/tcktransform.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcktransform.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (118/400) [LB] bin/warpinit g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckstats.cpp -o tmp/cmd/tckstats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (119/400) [LB] bin/warpcorrect (120/400) [LB] bin/warpconvert (121/400) [LB] bin/warp2metric (122/400) [LB] bin/voxel2mesh (123/400) [LB] bin/voxel2fixel (124/400) [LB] bin/vectorstats (125/400) [LB] bin/tsfvalidate (126/400) [LB] bin/tsfthreshold (127/400) [LB] bin/tsfsmooth (128/400) [LB] bin/tsfmult (129/400) [LB] bin/tsfinfo (130/400) [LB] bin/tsfdivide (131/400) [LB] bin/transformconvert (132/400) [LB] bin/transformcompose (133/400) [LB] bin/tensor2metric (134/400) [LB] bin/tcktransform (135/400) [CC] tmp/src/dwi/tractography/weights.o (136/400) [CC] tmp/src/dwi/tractography/resampling/arc.o (137/400) [CC] tmp/src/dwi/directions/set.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from src/dwi/tractography/weights.h:20, from src/dwi/tractography/weights.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (138/400) [LB] bin/tckstats g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/arc.h:21, from src/dwi/tractography/resampling/arc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (139/400) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/directions/set.h:23, from src/dwi/directions/set.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (140/400) [CC] tmp/src/dwi/fmls.o (141/400) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from cmd/transformcalc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (142/400) [LB] bin/transformcalc g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/track_contribution.cpp -o tmp/src/dwi/tractography/SIFT/track_contribution.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT/track_contribution.h:23, from src/dwi/tractography/SIFT/track_contribution.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (143/400) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o (144/400) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/SIFT/track_index_range.h:20, from src/dwi/tractography/SIFT2/reg_calculator.h:21, from src/dwi/tractography/SIFT2/reg_calculator.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (145/400) [CC] tmp/src/dwi/tractography/SIFT/sift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/fixed_num_points.h:21, from src/dwi/tractography/resampling/fixed_num_points.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (146/400) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/fixed_step_size.h:21, from src/dwi/tractography/resampling/fixed_step_size.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (147/400) [CC] tmp/src/dwi/tractography/resampling/resampling.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/sift.cpp -o tmp/src/dwi/tractography/SIFT/sift.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/SIFT/sift.h:20, from src/dwi/tractography/SIFT/sift.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (148/400) [CC] tmp/src/dwi/tractography/resampling/endpoints.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/track_index_range.cpp -o tmp/src/dwi/tractography/SIFT/track_index_range.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/SIFT/track_index_range.h:20, from src/dwi/tractography/SIFT/track_index_range.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (149/400) [CC] tmp/src/dwi/directions/predefined.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/directions/predefined.h:21, from src/dwi/directions/predefined.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (150/400) [CC] tmp/src/dwi/tractography/ACT/act.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/endpoints.h:21, from src/dwi/tractography/resampling/endpoints.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (151/400) [CC] tmp/src/dwi/tractography/mapping/voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/resampling.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (152/400) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/voxel.h:24, from src/dwi/tractography/mapping/voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (153/400) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/ACT/act.h:20, from src/dwi/tractography/ACT/act.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (154/400) [CC] tmp/src/dwi/tractography/mapping/mapping.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/SIFT2/fixel_updater.h:21, from src/dwi/tractography/SIFT2/fixel_updater.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (155/400) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from src/dwi/fmls.h:23, from src/dwi/fmls.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (156/400) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/mapping.cpp -o tmp/src/dwi/tractography/mapping/mapping.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/mapping/mapping.h:20, from src/dwi/tractography/mapping/mapping.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (157/400) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from ./core/math/golden_section_search.h:22, from src/dwi/tractography/SIFT2/coeff_optimiser.h:21, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (158/400) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/mapper_plugins.h:21, from src/dwi/tractography/mapping/mapper_plugins.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (159/400) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o (160/400) [CC] tmp/src/dwi/tractography/resampling/upsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/resampling/resampling.h:21, from src/dwi/tractography/resampling/upsampler.h:21, from src/dwi/tractography/resampling/upsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (161/400) [CC] tmp/src/dwi/tractography/mapping/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from src/dwi/tractography/SIFT/proc_mask.h:20, from src/dwi/tractography/SIFT/proc_mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (162/400) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (163/400) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/fixel_map.h:21, from src/dwi/tractography/mapping/fixel_td_map.h:21, from src/dwi/tractography/mapping/fixel_td_map.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (164/400) [CC] tmp/src/dwi/tractography/resampling/downsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/tracking/types.h:21, from src/dwi/tractography/tracking/generated_track.h:21, from src/dwi/tractography/resampling/downsampler.h:21, from src/dwi/tractography/resampling/downsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (165/400) [CC] tmp/src/dwi/directions/mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/SIFT2/line_search.h:21, from src/dwi/tractography/SIFT2/line_search.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (166/400) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/misc/bitset.h:24, from src/dwi/directions/mask.h:23, from src/dwi/directions/mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (167/400) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT2/streamline_stats.cpp -o tmp/src/dwi/tractography/SIFT2/streamline_stats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from src/dwi/tractography/SIFT2/streamline_stats.h:24, from src/dwi/tractography/SIFT2/streamline_stats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (168/400) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/mapper.h:21, from src/dwi/tractography/mapping/mapper.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (169/400) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (170/400) [LB] bin/tcksift2 g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/gradient_sort.cpp -o tmp/src/dwi/tractography/SIFT/gradient_sort.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/thread_queue.h:23, from src/dwi/tractography/SIFT/types.h:21, from src/dwi/tractography/SIFT/gradient_sort.h:23, from src/dwi/tractography/SIFT/gradient_sort.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (171/400) [CC] tmp/cmd/tcksample.o (172/400) [CC] tmp/cmd/tckresample.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/SIFT/sifter.h:22, from src/dwi/tractography/SIFT/sifter.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/sifter.h:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (173/400) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckresample.cpp -o tmp/cmd/tckresample.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckresample.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (174/400) [LB] bin/tckresample (175/400) [CC] tmp/src/dwi/tractography/mapping/writer.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/gaussian/mapper.cpp -o tmp/src/dwi/tractography/mapping/gaussian/mapper.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/mapping/gaussian/mapper.h:21, from src/dwi/tractography/mapping/gaussian/mapper.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (176/400) [CC] tmp/cmd/tckmap.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/mapping/writer.cpp -o tmp/src/dwi/tractography/mapping/writer.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/file/path.h:30, from src/dwi/tractography/mapping/writer.h:21, from src/dwi/tractography/mapping/writer.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (177/400) [CC] tmp/cmd/tckinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (178/400) [LB] bin/tcksift (179/400) [CC] tmp/src/dwi/tractography/GT/mhsampler.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tcksample.cpp -o tmp/cmd/tcksample.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksample.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (180/400) [LB] bin/tcksample g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckinfo.cpp -o tmp/cmd/tckinfo.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckinfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (181/400) [LB] bin/tckinfo (182/400) [CC] tmp/src/dwi/tractography/GT/particlegrid.o (183/400) [CC] tmp/cmd/tckglobal.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/mhsampler.cpp -o tmp/src/dwi/tractography/GT/mhsampler.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/GT/mhsampler.h:20, from src/dwi/tractography/GT/mhsampler.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (184/400) [CC] tmp/src/dwi/tractography/GT/externalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/particlegrid.cpp -o tmp/src/dwi/tractography/GT/particlegrid.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/GT/particlegrid.h:23, from src/dwi/tractography/GT/particlegrid.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (185/400) [CC] tmp/src/dwi/tractography/GT/gt.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/gt.cpp -o tmp/src/dwi/tractography/GT/gt.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from src/dwi/tractography/GT/gt.h:27, from src/dwi/tractography/GT/gt.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (186/400) [CC] tmp/src/dwi/tractography/GT/particle.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/particle.cpp -o tmp/src/dwi/tractography/GT/particle.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/GT/particle.h:20, from src/dwi/tractography/GT/particle.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (187/400) [CC] tmp/src/dwi/tractography/GT/internalenergy.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/internalenergy.cpp -o tmp/src/dwi/tractography/GT/internalenergy.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/GT/internalenergy.h:20, from src/dwi/tractography/GT/internalenergy.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (188/400) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckglobal.cpp -o tmp/cmd/tckglobal.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckglobal.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (189/400) [CC] tmp/src/dwi/tractography/tracking/shared.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/GT/externalenergy.cpp -o tmp/src/dwi/tractography/GT/externalenergy.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/GT/externalenergy.h:20, from src/dwi/tractography/GT/externalenergy.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (190/400) [LB] bin/tckglobal (191/400) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/tracking/shared.cpp -o tmp/src/dwi/tractography/tracking/shared.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/tracking/shared.h:22, from src/dwi/tractography/tracking/shared.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (192/400) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/transform.h:20, from src/dwi/tractography/seeding/dynamic.h:24, from src/dwi/tractography/seeding/dynamic.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (193/400) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/algorithms/iFOD1.cpp -o tmp/src/dwi/tractography/algorithms/iFOD1.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from ./core/math/legendre.h:20, from ./core/math/SH.h:20, from src/dwi/tractography/algorithms/iFOD1.h:20, from src/dwi/tractography/algorithms/iFOD1.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (194/400) [CC] tmp/src/dwi/tractography/seeding/basic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/tracking/write_kernel.cpp -o tmp/src/dwi/tractography/tracking/write_kernel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from src/dwi/tractography/tracking/write_kernel.h:24, from src/dwi/tractography/tracking/write_kernel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (195/400) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/seeding/basic.cpp -o tmp/src/dwi/tractography/seeding/basic.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/roi.h:20, from src/dwi/tractography/seeding/basic.h:20, from src/dwi/tractography/seeding/basic.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (196/400) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/ACT/gmwmi.cpp -o tmp/src/dwi/tractography/ACT/gmwmi.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/ACT/gmwmi.h:21, from src/dwi/tractography/ACT/gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (197/400) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/algorithms/iFOD2.cpp -o tmp/src/dwi/tractography/algorithms/iFOD2.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/algorithms/iFOD2.h:22, from src/dwi/tractography/algorithms/iFOD2.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (198/400) [CC] tmp/src/dwi/tractography/tracking/early_exit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/seeding/gmwmi.cpp -o tmp/src/dwi/tractography/seeding/gmwmi.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/seeding/gmwmi.h:21, from src/dwi/tractography/seeding/gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (199/400) [CC] tmp/src/dwi/tractography/tracking/method.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/tracking/early_exit.cpp -o tmp/src/dwi/tractography/tracking/early_exit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from src/dwi/tractography/tracking/early_exit.h:20, from src/dwi/tractography/tracking/early_exit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (200/400) [CC] tmp/src/dwi/tractography/tracking/tractography.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/tracking/method.cpp -o tmp/src/dwi/tractography/tracking/method.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/tracking/types.h:21, from src/dwi/tractography/tracking/method.h:21, from src/dwi/tractography/tracking/method.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (201/400) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/tracking/tractography.cpp -o tmp/src/dwi/tractography/tracking/tractography.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/tracking/tractography.h:20, from src/dwi/tractography/tracking/tractography.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (202/400) [CC] tmp/src/dwi/tractography/editing/worker.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/editing/worker.cpp -o tmp/src/dwi/tractography/editing/worker.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/editing/worker.h:23, from src/dwi/tractography/editing/worker.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (203/400) [CC] tmp/src/dwi/tractography/editing/receiver.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/properties.h:21, from src/dwi/tractography/seeding/seeding.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (204/400) [CC] tmp/cmd/tckedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/editing/receiver.cpp -o tmp/src/dwi/tractography/editing/receiver.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/dwi/tractography/editing/receiver.h:24, from src/dwi/tractography/editing/receiver.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (205/400) [CC] tmp/src/dwi/tractography/editing/editing.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/editing/editing.cpp -o tmp/src/dwi/tractography/editing/editing.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/editing/editing.h:20, from src/dwi/tractography/editing/editing.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (206/400) [CC] tmp/cmd/tckdfc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckedit.cpp -o tmp/cmd/tckedit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckedit.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (207/400) [LB] bin/tckedit g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckgen.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (208/400) [LB] bin/tckgen g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckmap.cpp -o tmp/cmd/tckmap.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckmap.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (209/400) [LB] bin/tckmap (210/400) [CC] tmp/cmd/tckconvert.o (211/400) [CC] tmp/cmd/tck2fixel.o (212/400) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckdfc.cpp -o tmp/cmd/tckdfc.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckdfc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (213/400) [LB] bin/tckdfc g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/dwi/tractography/connectome/tck2nodes.h:21, from src/dwi/tractography/connectome/tck2nodes.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (214/400) [CC] tmp/cmd/tck2connectome.o (215/400) [CC] tmp/src/dwi/tractography/connectome/connectome.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/tractography/connectome/connectome.h:22, from src/dwi/tractography/connectome/connectome.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (216/400) [CC] tmp/src/dwi/tractography/connectome/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (217/400) [LB] bin/tckconvert g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tck2connectome.cpp -o tmp/cmd/tck2connectome.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tck2connectome.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (218/400) [CC] tmp/cmd/shconv.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/connectome/matrix.cpp -o tmp/src/dwi/tractography/connectome/matrix.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/connectome/matrix.h:22, from src/dwi/tractography/connectome/matrix.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (219/400) [LB] bin/tck2connectome (220/400) [CC] tmp/cmd/shbasis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/tck2fixel.cpp -o tmp/cmd/tck2fixel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tck2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (221/400) [LB] bin/tck2fixel (222/400) [CC] tmp/cmd/sh2response.o (223/400) [CC] tmp/cmd/sh2power.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/shconv.cpp -o tmp/cmd/shconv.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/shconv.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (224/400) [LB] bin/shconv (225/400) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/sh2power.cpp -o tmp/cmd/sh2power.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2power.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (226/400) [LB] bin/sh2power (227/400) [CC] tmp/cmd/sh2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/sh2response.cpp -o tmp/cmd/sh2response.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2response.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (228/400) [LB] bin/sh2response g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/shbasis.cpp -o tmp/cmd/shbasis.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from cmd/shbasis.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (229/400) [LB] bin/shbasis (230/400) [CC] tmp/src/dwi/directions/file.o (231/400) [CC] tmp/cmd/peaks2fixel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o: In file included from /usr/include/eigen3/Eigen/Core:214, from ./core/math/sphere.h:24, from src/dwi/directions/file.h:20, from src/dwi/directions/file.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (232/400) [CC] tmp/cmd/peaks2amp.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2peaks.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (233/400) [LB] bin/sh2peaks (234/400) [CC] tmp/cmd/mtnormalise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/sh2amp.cpp -o tmp/cmd/sh2amp.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/sh2amp.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (235/400) [LB] bin/sh2amp g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/peaks2amp.cpp -o tmp/cmd/peaks2amp.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/peaks2amp.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (236/400) [LB] bin/peaks2amp (237/400) [CC] tmp/src/surface/mesh_multi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/peaks2fixel.cpp -o tmp/cmd/peaks2fixel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/peaks2fixel.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (238/400) [LB] bin/peaks2fixel (239/400) [CC] tmp/src/colourmap.o (240/400) [CC] tmp/src/registration/multi_contrast.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/colourmap.cpp -o tmp/src/colourmap.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/colourmap.h:21, from src/colourmap.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (241/400) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from src/connectome/connectome.h:21, from src/surface/types.h:21, from src/surface/mesh_multi.h:21, from src/surface/mesh_multi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (242/400) [CC] tmp/cmd/mrthreshold.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/multi_contrast.cpp -o tmp/src/registration/multi_contrast.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/multi_contrast.h:22, from src/registration/multi_contrast.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (243/400) [CC] tmp/cmd/mrstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrstats.cpp -o tmp/cmd/mrstats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrstats.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (244/400) [LB] bin/mrstats g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mtnormalise.cpp -o tmp/cmd/mtnormalise.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mtnormalise.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (245/400) [LB] bin/mtnormalise g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrthreshold.cpp -o tmp/cmd/mrthreshold.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrthreshold.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (246/400) [LB] bin/mrthreshold (247/400) [CC] tmp/src/registration/transform/convergence_check.o (248/400) [CC] tmp/src/registration/transform/initialiser.o (249/400) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/math/math.h:23, from src/registration/transform/convergence_check.h:21, from src/registration/transform/convergence_check.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (250/400) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/transform/initialiser.h:20, from src/registration/transform/initialiser.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (251/400) [CC] tmp/src/registration/nonlinear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/nonlinear.h:20, from src/registration/nonlinear.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (252/400) [CC] tmp/src/registration/linear.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/linear.cpp -o tmp/src/registration/linear.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/registration/linear.h:22, from src/registration/linear.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (253/400) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from src/registration/transform/initialiser_helpers.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (254/400) [CC] tmp/src/registration/transform/rigid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/rigid.h:20, from src/registration/transform/rigid.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (255/400) [CC] tmp/cmd/mrmetric.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrmetric.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (256/400) [LB] bin/mrmetric (257/400) [CC] tmp/cmd/mrmath.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrmath.cpp -o tmp/cmd/mrmath.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrmath.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (258/400) [LB] bin/mrmath (259/400) [CC] tmp/cmd/mrinfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrinfo.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (260/400) [LB] bin/mrinfo (261/400) [CC] tmp/cmd/mrhistogram.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrhistogram.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (262/400) [LB] bin/mrhistogram (263/400) [CC] tmp/cmd/mrhistmatch.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrhistmatch.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (264/400) [LB] bin/mrhistmatch (265/400) [CC] tmp/cmd/mrgrid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrgrid.cpp -o tmp/cmd/mrgrid.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrgrid.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (266/400) [LB] bin/mrgrid g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/affine.h:20, from src/registration/transform/affine.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (267/400) [CC] tmp/cmd/mrfilter.o (268/400) [CC] tmp/cmd/mredit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mredit.cpp -o tmp/cmd/mredit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mredit.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (269/400) [LB] bin/mredit (270/400) [CC] tmp/cmd/mrdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrfilter.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (271/400) [LB] bin/mrfilter g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrdump.cpp -o tmp/cmd/mrdump.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrdump.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (272/400) [LB] bin/mrdump (273/400) [CC] tmp/cmd/mrdegibbs.o (274/400) [CC] tmp/cmd/mrconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o: In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:214, from /usr/include/eigen3/unsupported/Eigen/FFT:16, from cmd/mrdegibbs.cpp:17: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/unsupported/Eigen/../../Eigen/Core:172: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/unsupported/Eigen/../../Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (275/400) [LB] bin/mrdegibbs (276/400) [CC] tmp/cmd/mrcolour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrcolour.cpp -o tmp/cmd/mrcolour.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcolour.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (277/400) [LB] bin/mrcolour (278/400) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/axes.h:24, from cmd/mrconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (279/400) [LB] bin/mrconvert g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrclusterstats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h: At global scope: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (280/400) [CC] tmp/src/stats/tfce.o (281/400) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/exception.h:24, from ./core/thread_queue.h:23, from src/stats/tfce.h:20, from src/stats/tfce.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/stats/tfce.h:24: src/stats/enhance.h: At global scope: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (282/400) [CC] tmp/cmd/mrcheckerboardmask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from ./core/filter/connected_components.h:21, from src/stats/cluster.h:20, from src/stats/cluster.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23: src/stats/enhance.h: At global scope: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (283/400) [LB] bin/mrclusterstats (284/400) [CC] tmp/cmd/mrcentroid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcheckerboardmask.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (285/400) [LB] bin/mrcheckerboardmask (286/400) [CC] tmp/cmd/mrcat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrcentroid.cpp -o tmp/cmd/mrcentroid.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcentroid.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (287/400) [LB] bin/mrcentroid (288/400) [CC] tmp/cmd/mrcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrcat.cpp -o tmp/cmd/mrcat.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcat.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (289/400) [LB] bin/mrcat (290/400) [CC] tmp/cmd/mraverageheader.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrcalc.cpp:182: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (291/400) [LB] bin/mrcalc (292/400) [CC] tmp/cmd/meshfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/meshfilter.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (293/400) [CC] tmp/src/surface/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/mesh.h:24, from src/surface/filter/smooth.h:20, from src/surface/filter/smooth.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (294/400) [CC] tmp/src/surface/filter/base.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/progressbar.h:27, from src/surface/filter/base.h:20, from src/surface/filter/base.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (295/400) [LB] bin/meshfilter (296/400) [CC] tmp/cmd/meshconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mraverageheader.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (297/400) [LB] bin/mraverageheader g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/meshconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (298/400) [CC] tmp/src/surface/filter/vertex_transform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/surface/filter/vertex_transform.h:20, from src/surface/filter/vertex_transform.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (299/400) [LB] bin/meshconvert (300/400) [CC] tmp/src/surface/algo/mesh2image.o (301/400) [CC] tmp/cmd/mesh2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mesh2voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (302/400) [CC] tmp/cmd/maskfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/surface/algo/mesh2image.h:21, from src/surface/algo/mesh2image.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (303/400) [LB] bin/mesh2voxel (304/400) [CC] tmp/cmd/maskdump.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/maskdump.cpp -o tmp/cmd/maskdump.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/maskdump.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (305/400) [LB] bin/maskdump (306/400) [CC] tmp/cmd/labelstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/maskfilter.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (307/400) [LB] bin/maskfilter (308/400) [CC] tmp/cmd/labelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/labelstats.cpp -o tmp/cmd/labelstats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/labelstats.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (309/400) [LB] bin/labelstats (310/400) [CC] tmp/cmd/label2mesh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/labelconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (311/400) [LB] bin/labelconvert (312/400) [CC] tmp/cmd/label2colour.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/label2mesh.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (313/400) [LB] bin/label2mesh g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/label2colour.cpp -o tmp/cmd/label2colour.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/label2colour.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (314/400) [LB] bin/label2colour (315/400) [CC] tmp/cmd/fod2fixel.o (316/400) [CC] tmp/cmd/fod2dec.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fod2fixel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (317/400) [LB] bin/fod2fixel (318/400) [CC] tmp/cmd/fixelreorient.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fod2dec.cpp:19: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (319/400) [LB] bin/fod2dec (320/400) [CC] tmp/src/fixel/filter/connect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/fixel/filter/connect.cpp -o tmp/src/fixel/filter/connect.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/filter/connect.h:21, from src/fixel/filter/connect.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (321/400) [CC] tmp/src/fixel/matrix.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelreorient.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (322/400) [LB] bin/fixelreorient (323/400) [CC] tmp/cmd/fixelfilter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelfilter.cpp -o tmp/cmd/fixelfilter.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelfilter.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (324/400) [CC] tmp/src/fixel/filter/smooth.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/fixel/matrix.cpp -o tmp/src/fixel/matrix.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/matrix.h:21, from src/fixel/matrix.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (325/400) [CC] tmp/src/fixel/index_remapper.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/fixel/index_remapper.cpp -o tmp/src/fixel/index_remapper.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/index_remapper.h:23, from src/fixel/index_remapper.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (326/400) [CC] tmp/src/stats/cfe.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/stats/cfe.cpp -o tmp/src/stats/cfe.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/stats/cfe.h:20, from src/stats/cfe.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (327/400) [CC] tmp/cmd/fixelcrop.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/fixel/filter/smooth.cpp -o tmp/src/fixel/filter/smooth.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/fixel/matrix.h:21, from src/fixel/filter/smooth.h:21, from src/fixel/filter/smooth.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (328/400) [LB] bin/fixelfilter (329/400) [CC] tmp/cmd/fixelcorrespondence.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcrop.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (330/400) [LB] bin/fixelcrop (331/400) [CC] tmp/cmd/fixelconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcorrespondence.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (332/400) [LB] bin/fixelcorrespondence (333/400) [CC] tmp/cmd/fixelconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelconvert.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (334/400) [LB] bin/fixelconvert (335/400) [CC] tmp/cmd/fixelcfestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelconnectivity.cpp -o tmp/cmd/fixelconnectivity.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelconnectivity.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (336/400) [LB] bin/fixelconnectivity (337/400) [CC] tmp/cmd/fixel2voxel.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixelcfestats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (338/400) [LB] bin/fixelcfestats g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/apply.h:23, from cmd/fixel2voxel.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (339/400) [LB] bin/fixel2voxel (340/400) [CC] tmp/cmd/fixel2tsf.o (341/400) [CC] tmp/cmd/fixel2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2sh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (342/400) [LB] bin/fixel2sh (343/400) [CC] tmp/cmd/fixel2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2tsf.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (344/400) [LB] bin/fixel2tsf g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/fixel2peaks.cpp -o tmp/cmd/fixel2peaks.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/fixel2peaks.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (345/400) [LB] bin/fixel2peaks (346/400) [CC] tmp/cmd/dwiextract.o (347/400) [CC] tmp/cmd/dwidenoise.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwiextract.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (348/400) [LB] bin/dwiextract (349/400) [CC] tmp/cmd/dwi2tensor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2tensor.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (350/400) [LB] bin/dwi2tensor (351/400) [CC] tmp/cmd/dwi2mask.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2mask.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (352/400) [LB] bin/dwi2mask (353/400) [CC] tmp/src/dwi/sdeconv/csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from src/dwi/sdeconv/csd.h:20, from src/dwi/sdeconv/csd.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (354/400) [CC] tmp/cmd/dwi2fod.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2fod.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (355/400) [CC] tmp/src/dwi/sdeconv/msmt_csd.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/sdeconv/msmt_csd.cpp -o tmp/src/dwi/sdeconv/msmt_csd.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/sdeconv/msmt_csd.h:20, from src/dwi/sdeconv/msmt_csd.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (356/400) [LB] bin/dwi2fod (357/400) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (358/400) [LB] bin/dwi2adc (359/400) [CC] tmp/cmd/dirstat.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirstat.cpp -o tmp/cmd/dirstat.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirstat.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (360/400) [LB] bin/dirstat (361/400) [CC] tmp/cmd/dirsplit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirsplit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (362/400) [LB] bin/dirsplit (363/400) [CC] tmp/cmd/dirorder.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirorder.cpp -o tmp/cmd/dirorder.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirorder.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (364/400) [LB] bin/dirorder (365/400) [CC] tmp/cmd/dirmerge.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirmerge.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (366/400) [LB] bin/dirmerge (367/400) [CC] tmp/cmd/dirgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirgen.cpp -o tmp/cmd/dirgen.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirgen.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (368/400) [LB] bin/dirgen (369/400) [CC] tmp/cmd/dirflip.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dirflip.cpp -o tmp/cmd/dirflip.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dirflip.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (370/400) [LB] bin/dirflip (371/400) [CC] tmp/cmd/dcminfo.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dwidenoise.cpp:18: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (372/400) [LB] bin/dwidenoise g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dcminfo.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (373/400) [LB] bin/dcminfo (374/400) [CC] tmp/cmd/dcmedit.o (375/400) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/dcmedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (376/400) [LB] bin/dcmedit (377/400) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/connectome/enhance.h:23, from src/connectome/enhance.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/connectome/enhance.h:26: src/stats/enhance.h: At global scope: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (378/400) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectomestats.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h: At global scope: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (379/400) [LB] bin/connectomestats g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectomeedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h: At global scope: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (380/400) [LB] bin/connectomeedit (381/400) [CC] tmp/cmd/connectome2tck.o (382/400) [CC] tmp/src/dwi/tractography/connectome/exemplar.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from src/dwi/tractography/streamline.h:23, from src/dwi/tractography/connectome/exemplar.h:22, from src/dwi/tractography/connectome/exemplar.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (383/400) [CC] tmp/src/dwi/tractography/connectome/extract.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/file/ofstream.h:24, from src/dwi/tractography/connectome/extract.h:21, from src/dwi/tractography/connectome/extract.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (384/400) [CC] tmp/cmd/amp2sh.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/connectome2tck.cpp:20: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (385/400) [LB] bin/connectome2tck (386/400) [CC] tmp/cmd/amp2response.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/amp2sh.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (387/400) [LB] bin/amp2sh g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/amp2response.cpp -o tmp/cmd/amp2response.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Dense:1, from cmd/amp2response.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (388/400) [LB] bin/amp2response (389/400) [CC] tmp/cmd/afdconnectivity.o (390/400) [CC] tmp/cmd/5ttedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5ttedit.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (391/400) [LB] bin/5ttedit (392/400) [CC] tmp/cmd/5ttcheck.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from cmd/5ttcheck.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (393/400) [LB] bin/5ttcheck g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ cmd/afdconnectivity.cpp:123:57: required from here 123 | class AFDConnectivity : public DWI::Tractography::SIFT::ModelBase | ^~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (394/400) [LB] bin/afdconnectivity (395/400) [CC] tmp/cmd/5tt2vis.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5tt2vis.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (396/400) [LB] bin/5tt2vis (397/400) [CC] tmp/cmd/5tt2gmwmi.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/5tt2gmwmi.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (398/400) [LB] bin/5tt2gmwmi g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrtransform.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (399/400) [LB] bin/mrtransform g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version with nogui, noshared, openmp" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-complain-wrong-lang -I /usr/include/eigen3 -fopenmp -std=c++14 -Wno-maybe-uninitialized -Wno-deprecated-declarations -Wno-error -include cassert -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -fopenmp -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -I /usr/include/eigen3 -std=c++14 cmd/mrregister.cpp -o tmp/cmd/mrregister.o: In file included from /usr/include/eigen3/Eigen/Core:214, from /usr/include/eigen3/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrregister.cpp:17: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1671 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:172: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = eigen_packet_wrapper; typename unpacket_traits::type = signed char]’: /usr/include/eigen3/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess] 1716 | memcpy(&res, from, sizeof(Packet4c)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper’} declared here 159 | struct eigen_packet_wrapper | ^~~~~~~~~~~~~~~~~~~~ (400/400) [LB] bin/mrregister + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.8PrHJp + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + '[' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT ++ dirname /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build + mkdir /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin + cp -a bin /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a lib /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a share /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + binary_name=5tt2gmwmi + '[' 5tt2gmwmi '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2gmwmi /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2gmwmi + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + binary_name=5tt2vis + '[' 5tt2vis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2vis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2vis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + binary_name=5ttcheck + '[' 5ttcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + binary_name=5ttedit + '[' 5ttedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + binary_name=5ttgen + '[' 5ttgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + binary_name=afdconnectivity + '[' afdconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/afdconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/afdconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + binary_name=amp2response + '[' amp2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + binary_name=amp2sh + '[' amp2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + binary_name=blend + '[' blend '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/blend /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/blend + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + binary_name=connectome2tck + '[' connectome2tck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectome2tck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectome2tck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + binary_name=connectomeedit + '[' connectomeedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomeedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomeedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + binary_name=connectomestats + '[' connectomestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + binary_name=convert_bruker + '[' convert_bruker '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/convert_bruker /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/convert_bruker + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + binary_name=dcmedit + '[' dcmedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcmedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcmedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + binary_name=dcminfo + '[' dcminfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcminfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcminfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + binary_name=dirflip + '[' dirflip '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirflip /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirflip + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + binary_name=dirgen + '[' dirgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + binary_name=dirmerge + '[' dirmerge '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirmerge /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirmerge + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + binary_name=dirorder + '[' dirorder '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirorder /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirorder + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + binary_name=dirsplit + '[' dirsplit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirsplit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirsplit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + binary_name=dirstat + '[' dirstat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirstat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirstat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + binary_name=dwi2adc + '[' dwi2adc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2adc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2adc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + binary_name=dwi2fod + '[' dwi2fod '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2fod /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2fod + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + binary_name=dwi2mask + '[' dwi2mask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2mask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2mask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + binary_name=dwi2response + '[' dwi2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + binary_name=dwi2tensor + '[' dwi2tensor '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2tensor /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2tensor + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + binary_name=dwibiascorrect + '[' dwibiascorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwibiascorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwibiascorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + binary_name=dwicat + '[' dwicat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwicat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwicat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + binary_name=dwidenoise + '[' dwidenoise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwidenoise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwidenoise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + binary_name=dwiextract + '[' dwiextract '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwiextract /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwiextract + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + binary_name=dwifslpreproc + '[' dwifslpreproc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwifslpreproc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwifslpreproc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + binary_name=dwigradcheck + '[' dwigradcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwigradcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwigradcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + binary_name=dwinormalise + '[' dwinormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwinormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwinormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + binary_name=dwishellmath + '[' dwishellmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwishellmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwishellmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + binary_name=fixel2peaks + '[' fixel2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + binary_name=fixel2sh + '[' fixel2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + binary_name=fixel2tsf + '[' fixel2tsf '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2tsf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2tsf + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + binary_name=fixel2voxel + '[' fixel2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + binary_name=fixelcfestats + '[' fixelcfestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcfestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcfestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + binary_name=fixelconnectivity + '[' fixelconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + binary_name=fixelconvert + '[' fixelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + binary_name=fixelcorrespondence + '[' fixelcorrespondence '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcorrespondence /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcorrespondence + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + binary_name=fixelcrop + '[' fixelcrop '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcrop /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcrop + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + binary_name=fixelfilter + '[' fixelfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + binary_name=fixelreorient + '[' fixelreorient '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelreorient /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelreorient + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + binary_name=fod2dec + '[' fod2dec '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2dec /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2dec + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + binary_name=fod2fixel + '[' fod2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + binary_name=for_each + '[' for_each '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/for_each /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/for_each + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + binary_name=gen_scheme + '[' gen_scheme '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/gen_scheme /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/gen_scheme + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + binary_name=label2colour + '[' label2colour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2colour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2colour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + binary_name=label2mesh + '[' label2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + binary_name=labelconvert + '[' labelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + binary_name=labelsgmfix + '[' labelsgmfix '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelsgmfix /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelsgmfix + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + binary_name=labelstats + '[' labelstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + binary_name=maskdump + '[' maskdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + binary_name=maskfilter + '[' maskfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + binary_name=mesh2voxel + '[' mesh2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mesh2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mesh2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + binary_name=meshconvert + '[' meshconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + binary_name=meshfilter + '[' meshfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + binary_name=mraverageheader + '[' mraverageheader '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mraverageheader /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mraverageheader + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + binary_name=mrcalc + '[' mrcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + binary_name=mrcat + '[' mrcat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + binary_name=mrcentroid + '[' mrcentroid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcentroid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcentroid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + binary_name=mrcheckerboardmask + '[' mrcheckerboardmask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcheckerboardmask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcheckerboardmask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + binary_name=mrclusterstats + '[' mrclusterstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrclusterstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrclusterstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + binary_name=mrcolour + '[' mrcolour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcolour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcolour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + binary_name=mrconvert + '[' mrconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + binary_name=mrdegibbs + '[' mrdegibbs '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdegibbs /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdegibbs + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + binary_name=mrdump + '[' mrdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + binary_name=mredit + '[' mredit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mredit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mredit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + binary_name=mrfilter + '[' mrfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + binary_name=mrgrid + '[' mrgrid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrgrid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrgrid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + binary_name=mrhistmatch + '[' mrhistmatch '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistmatch /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistmatch + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + binary_name=mrhistogram + '[' mrhistogram '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistogram /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistogram + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + binary_name=mrinfo + '[' mrinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + binary_name=mrmath + '[' mrmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + binary_name=mrmetric + '[' mrmetric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmetric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmetric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + binary_name=mrregister + '[' mrregister '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrregister /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrregister + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + binary_name=mrstats + '[' mrstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + binary_name=mrthreshold + '[' mrthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + binary_name=mrtransform + '[' mrtransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + binary_name=mrtrix3.py + '[' mrtrix3.py '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix3.py /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix3.py + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + binary_name=mrtrix_cleanup + '[' mrtrix_cleanup '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix_cleanup /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix_cleanup + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + binary_name=mtnormalise + '[' mtnormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mtnormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mtnormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + binary_name=notfound + '[' notfound '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/notfound /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/notfound + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + binary_name=peaks2amp + '[' peaks2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + binary_name=peaks2fixel + '[' peaks2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + binary_name=population_template + '[' population_template '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/population_template /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/population_template + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + binary_name=responsemean + '[' responsemean '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/responsemean /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/responsemean + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + binary_name=sh2amp + '[' sh2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + binary_name=sh2peaks + '[' sh2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + binary_name=sh2power + '[' sh2power '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2power /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2power + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + binary_name=sh2response + '[' sh2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + binary_name=shbasis + '[' shbasis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shbasis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shbasis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + binary_name=shconv + '[' shconv '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shconv /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shconv + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + binary_name=tck2connectome + '[' tck2connectome '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2connectome /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2connectome + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + binary_name=tck2fixel + '[' tck2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + binary_name=tckconvert + '[' tckconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + binary_name=tckdfc + '[' tckdfc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckdfc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckdfc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + binary_name=tckedit + '[' tckedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + binary_name=tckgen + '[' tckgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + binary_name=tckglobal + '[' tckglobal '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckglobal /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckglobal + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + binary_name=tckinfo + '[' tckinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + binary_name=tckmap + '[' tckmap '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckmap /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckmap + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + binary_name=tckresample + '[' tckresample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckresample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckresample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + binary_name=tcksample + '[' tcksample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + binary_name=tcksift + '[' tcksift '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + binary_name=tcksift2 + '[' tcksift2 '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift2 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift2 + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + binary_name=tckstats + '[' tckstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + binary_name=tcktransform + '[' tcktransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcktransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcktransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + binary_name=tensor2metric + '[' tensor2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tensor2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tensor2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + binary_name=transformcalc + '[' transformcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + binary_name=transformcompose + '[' transformcompose '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcompose /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcompose + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + binary_name=transformconvert + '[' transformconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + binary_name=tsfdivide + '[' tsfdivide '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfdivide /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfdivide + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + binary_name=tsfinfo + '[' tsfinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + binary_name=tsfmult + '[' tsfmult '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfmult /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfmult + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + binary_name=tsfsmooth + '[' tsfsmooth '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfsmooth /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfsmooth + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + binary_name=tsfthreshold + '[' tsfthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + binary_name=tsfvalidate + '[' tsfvalidate '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfvalidate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfvalidate + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + binary_name=vectorstats + '[' vectorstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/vectorstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/vectorstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + binary_name=voxel2fixel + '[' voxel2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + binary_name=voxel2mesh + '[' voxel2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + binary_name=warp2metric + '[' warp2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warp2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warp2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + binary_name=warpconvert + '[' warpconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + binary_name=warpcorrect + '[' warpcorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpcorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpcorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + binary_name=warpinit + '[' warpinit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + binary_name=warpinvert + '[' warpinvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinvert + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker 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/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean: updating /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert: no change 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/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit: no change /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert: no change + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 3.0.8-1.fc43 --unique-debug-suffix -3.0.8-1.fc43.aarch64 --unique-debug-src-base mrtrix3-3.0.8-1.fc43.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8 find-debuginfo: starting Extracting debug info from 110 files DWARF-compressing 110 files dwz: Multifile temporary files too large sepdebugcrcfix: Updated 110 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/mrtrix3-3.0.8-1.fc43.aarch64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib64/mrtrix3/bin/notfound from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mrtrix3/bin/gen_scheme from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Scanned 73 directories and 1020 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/mrtrix3-3.0.8-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.H44PYM + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + export LD_LIBRARY_PATH=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/lib + LD_LIBRARY_PATH=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/lib + /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo --version == mrinfo 3.0.8 == 64 bit release version with nogui, noshared, openmp, built Jan 4 2026, using Eigen 3.4.0 Author(s): J-Donald Tournier (jdtournier@gmail.com) and Robert E. Smith (robert.smith@florey.edu.au) Copyright (c) 2008-2025 the MRtrix3 contributors. This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/. Covered Software is provided under this License on an "as is" basis, without warranty of any kind, either expressed, implied, or statutory, including, without limitation, warranties that the Covered Software is free of defects, merchantable, fit for a particular purpose or non-infringing. See the Mozilla Public License v. 2.0 for more details. For more details, see http://www.mrtrix.org/. + RPM_EC=0 ++ jobs -p + exit 0 Processing files: mrtrix3-3.0.8-1.fc43.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.wPHq0O + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + DOCDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/README.md /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.v5BM5h + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + LICENSEDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/LICENCE.txt /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi warning: absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis warning: absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck warning: absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit warning: absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen warning: absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity warning: absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response warning: absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh warning: absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend warning: absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck warning: absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit warning: absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats warning: absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker warning: absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit warning: absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo warning: absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip warning: absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen warning: absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge warning: absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder warning: absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit warning: absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat warning: absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc warning: absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod warning: absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask warning: absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response warning: absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor warning: absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect warning: absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat warning: absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise warning: absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract warning: absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc warning: absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck warning: absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise warning: absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath warning: absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks warning: absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh warning: absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf warning: absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel warning: absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats warning: absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity warning: absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert warning: absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence warning: absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop warning: absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter warning: absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient warning: absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec warning: absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel warning: absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each warning: absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme warning: absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour warning: absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh warning: absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert warning: absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix warning: absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats warning: absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump warning: absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter warning: absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel warning: absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert warning: absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter warning: absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader warning: absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc warning: absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat warning: absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid warning: absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask warning: absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats warning: absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour warning: absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert warning: absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs warning: absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump warning: absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit warning: absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter warning: absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid warning: absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch warning: absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram warning: absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo warning: absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath warning: absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric warning: absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister warning: absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats warning: absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold warning: absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform warning: absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py warning: absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup warning: absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise warning: absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound warning: absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp warning: absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel warning: absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template warning: absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean warning: absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp warning: absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks warning: absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power warning: absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response warning: absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis warning: absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv warning: absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome warning: absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel warning: absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert warning: absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc warning: absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit warning: absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen warning: absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal warning: absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo warning: absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap warning: absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample warning: absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample warning: absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift warning: absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 warning: absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats warning: absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform warning: absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric warning: absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc warning: absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose warning: absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert warning: absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide warning: absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo warning: absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult warning: absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth warning: absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold warning: absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate warning: absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats warning: absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel warning: absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh warning: absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric warning: absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert warning: absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect warning: absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit warning: absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Provides: mrtrix3 = 3.0.8-1.fc43 mrtrix3(aarch-64) = 3.0.8-1.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: mrtrix3-debugsource-3.0.8-1.fc43.aarch64 Provides: mrtrix3-debugsource = 3.0.8-1.fc43 mrtrix3-debugsource(aarch-64) = 3.0.8-1.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: mrtrix3-debuginfo-3.0.8-1.fc43.aarch64 Provides: debuginfo(build-id) = 012a674acbdf11cc98a8ec1328eaa9d9b322a995 debuginfo(build-id) = 0188353e631e8ef868a720c1770f7595580dcde5 debuginfo(build-id) = 07d9fa7689d7681644258fa0521dff9a745ee16e debuginfo(build-id) = 0813a94c6cd218f7891adb2097609781dbed84ea debuginfo(build-id) = 08294c18b561c97b3e7dad40c031492c4705e2c1 debuginfo(build-id) = 098b13af36e62928384c47357a9ccb03892998d4 debuginfo(build-id) = 0c94a9787304563ffcbcd8081410b254e4981e04 debuginfo(build-id) = 0d7308d96ff51a3f9934bdf40208d5fc804bc475 debuginfo(build-id) = 1005ab22b70545ae36dccb824ead49b8f8f2017f debuginfo(build-id) = 10787b1838aa36709d4cc07c36ae746469c04bbd debuginfo(build-id) = 12a11ee41720d3731dcc0ca65c5e62ea3b099765 debuginfo(build-id) = 149865841a774a9c7daa07aaa8f4fd810d4e9e13 debuginfo(build-id) = 18d636dca1bac75787c7b54c8cb53e22fc05f00b debuginfo(build-id) = 1f3e7ef9c512ebd5c62ad7368bf409ee39f4351d debuginfo(build-id) = 2008e3d8008bc5a81a91063abfa05c3b651db287 debuginfo(build-id) = 21541bb41d0afe39d64b921274975cf9daa55a5b debuginfo(build-id) = 23c7c6f914ae654d87f46c63cea816cd0bfba4ac debuginfo(build-id) = 25603ec47bed388fe009400de5af020ee40199aa debuginfo(build-id) = 26aff4b214d49d2c3a03c2217c73c831e1899245 debuginfo(build-id) = 27674c161f6e0fdf422213f1dfc44b1fb19527b0 debuginfo(build-id) = 2bf324ae5a4e5749279a8165b752d18483854761 debuginfo(build-id) = 359cf43b1687a20106d633200fbe3a87b46af616 debuginfo(build-id) = 37af96b0ccc5736c01ab5fc8144a130727b78022 debuginfo(build-id) = 37d055f467269c428dcef14855386fbdadd2ac36 debuginfo(build-id) = 3e19782d91761e4b01ebeb058c3717ac92142306 debuginfo(build-id) = 3e21d448d5074157a18b50f90b562eb8f5ea5294 debuginfo(build-id) = 3e75d04fcaa8315474fc9ff3af11cef79b4ca5c3 debuginfo(build-id) = 404cd995363184e48f3eb696d2223574ec4bbd29 debuginfo(build-id) = 40646dbf966d9cb2a72fb88345f961dd8e110586 debuginfo(build-id) = 428d1d3da5475fb35de57fce925c1df769ea7f6b debuginfo(build-id) = 452b2327a392f4a39ceaf66bacc50c58975e5eaf debuginfo(build-id) = 494e746b64d1a9da57e50f6a75fa363c9a4998b6 debuginfo(build-id) = 4960c65d759741a8a79d9a72bdeff28f8fe43557 debuginfo(build-id) = 4b98a8aa3eaf22b0c04858094d4134c65b774fbb debuginfo(build-id) = 4cfe61823edf5406cfbd61b11527d7495f88e777 debuginfo(build-id) = 4e6245a3e97a0038492bcd4615a0e2fffe9e11e2 debuginfo(build-id) = 50af0bcb859f80df25b8c8fe15f036d20f1f3ab1 debuginfo(build-id) = 5863c71e0a7ab119f467faf9575ba3123fa5e240 debuginfo(build-id) = 595cbbf64575c656d63a54ffc76e2ae6db0796ed debuginfo(build-id) = 62e28f38f06fc6247d0a59311a6bd33b4964ea08 debuginfo(build-id) = 668d3400ee6bbc8e1007aa83c51efa0c7353dd3a debuginfo(build-id) = 668d95e265d4c76e84e5e5a020cd31b372b05ff2 debuginfo(build-id) = 68c0ce7d6bae9cd507bf6046fc39ea6f6333174a debuginfo(build-id) = 6a63abb8c052a32133f7e91070210e11c2ed221c debuginfo(build-id) = 70cb7584a76e4e1c5dec9434cd9acd4333bbb2c0 debuginfo(build-id) = 76b93ed7ea4736bb92245ca8055e2d945878e988 debuginfo(build-id) = 78c451896ccdbfb5eb5fc6ea42d444fc1b531860 debuginfo(build-id) = 7d7306812931561d629e9bba31de02422a09ea8a debuginfo(build-id) = 7f066a6d13b041a2c1583bbdf2666d00a8730017 debuginfo(build-id) = 8132dcb75cfea0952e37bafd971271fdea229470 debuginfo(build-id) = 81f4c4fe6e0cccac7ae439629730e24396f328ac debuginfo(build-id) = 88e29f5059472c965e1b389b564aea5af429c522 debuginfo(build-id) = 8c8fc9c00449721f73c670408753b7fea952a7db debuginfo(build-id) = 8cd1bc3cd48e5572ccf3f497e377bb6cc3d8b173 debuginfo(build-id) = 8d8299ce0c39ba699a818a831f5d36c19d359f67 debuginfo(build-id) = 908d7a0e4453402a3309601cdd5562b711fe1aed debuginfo(build-id) = 911815926852c5c36ad551fcfafc0b4bc8bd5030 debuginfo(build-id) = 93e1d2c109654eb05031e2fe2648083e2ff46e67 debuginfo(build-id) = 9501cf806541d9df2a98685548d9211a3adb0dc7 debuginfo(build-id) = 95470d5d5a09cbd869362d56d8bef03120abc7cc debuginfo(build-id) = 9861f687199e30d7c341520763f31cedff80fb23 debuginfo(build-id) = a0067a53412345f67102822a64c6065c121d6b75 debuginfo(build-id) = a649fc5ddd6f628ebfcfd05b4141700e68b857c4 debuginfo(build-id) = a6e517e892cbc3808f5598b8c726914a04a97530 debuginfo(build-id) = a8f8a0b8e68f6b4b173f1ce658a1ca90030935a5 debuginfo(build-id) = a9cbc97e002bad19aa51a201105e3b05f7c55b87 debuginfo(build-id) = b0d58c4e3780582c813a82aef82e0c3b5defb151 debuginfo(build-id) = b49361a53401af7909bc19f82450aa357c171a30 debuginfo(build-id) = b497e411b5d8447705c006e4c13f95c6af507ffb debuginfo(build-id) = b6db938fbddf801bab5eb35bf345ed8ac158fc83 debuginfo(build-id) = b9885809a6cd0eae7ac1497d24df1a722aed3d55 debuginfo(build-id) = bc00d0c9cdef7194c5b9ff62517e2e0327775f3b debuginfo(build-id) = bd46e9196238bc0dbb6d13c1a3c98d4b44efda67 debuginfo(build-id) = be17af34bdebed48e44ebf236054f19658dac05e debuginfo(build-id) = bffe040b27a2e8910e65a28a76aee981c067d6fa debuginfo(build-id) = c100ba3415a88526152e084709c0045d78745023 debuginfo(build-id) = c2e970f20519a05bc837ff1592112726ec31ae47 debuginfo(build-id) = c3846dc436d257abc1d010df82977241eaccc250 debuginfo(build-id) = c3b706b55d5d065ceca4e54254c2218593c66966 debuginfo(build-id) = c40ee1c5064f9b551f70cd69d118e6e17f049441 debuginfo(build-id) = c5360e7c5b478e70914559ba8fde243a716b5740 debuginfo(build-id) = c61fbb6a5b617b0ecbdafa9071e742c3c301b48d debuginfo(build-id) = c9b64ec0b3b5a50f81510751ec9e0257c06fef03 debuginfo(build-id) = ca12895c17f25d6bc2b3f83a42c196ca151671e1 debuginfo(build-id) = cb3e9fbdc96cc5cf69ef55077beadfe801e4b5af debuginfo(build-id) = cb69f9635e25f83f5c2368ea4071ee990fa171ea debuginfo(build-id) = cec469df5dde113749525db24bb93c16b278734a debuginfo(build-id) = d0c34f51bbe57a6d00dd6623a48795022726cf24 debuginfo(build-id) = d1a71c346099b4b4d117348abfba94e4517b5728 debuginfo(build-id) = d32a77e11b10c1c25f9b014cc2c2ba6120598af9 debuginfo(build-id) = d713ace3dfda6b77f06c8105e2125e84e2f8809c debuginfo(build-id) = d754dda1d49549021652a50cfa5e44bf78e0df2b debuginfo(build-id) = db77f5c857871e1ff14af58b2456f574d401e95b debuginfo(build-id) = df4c01d7016f80be1c3d1ed5b17e08ed104fa40b debuginfo(build-id) = e101d89ac4ffd7901bf88b9fdb10dc286c8c7f81 debuginfo(build-id) = e492cc5b327dd2c2c5a233b9f4f3a79ad5b5eef2 debuginfo(build-id) = e6892bbc7dfc75a94ff69012725171d34fe3d2df debuginfo(build-id) = e693a16e9e4b10947cbe1e6b55b6aade50279b58 debuginfo(build-id) = e96ac9efcd238cd89b5f67e441323bbb720c375d debuginfo(build-id) = eb9e83a0a425c41718d680a5b6ff051f558c93e2 debuginfo(build-id) = ec50ccaf2e9f8f92fb47520471faa63d4c50e91c debuginfo(build-id) = ece1dbafa99ab72083ef5fcec115d5fd1c3a6bcf debuginfo(build-id) = edcf4ddeca3e8f9ca5a3133658ecf88e36ab381c debuginfo(build-id) = ef9559ee89470e0780bbac9a40556adabbf0e7fe debuginfo(build-id) = f1a0af85eafa4f46de518006b4ea2112dd613739 debuginfo(build-id) = f8891d73f7a4d6e0b350efaa37940ce54320b359 debuginfo(build-id) = f96197f9113972b094ad2e728fba101d9521fd0c debuginfo(build-id) = fa6b1dafca732372193b03b268b235663577a564 debuginfo(build-id) = fd243ed5526f03c992ff793be17343067b894f0a debuginfo(build-id) = fe8c07cb88e7b79fb1444bb3e402ff0d9ae75ce3 mrtrix3-debuginfo = 3.0.8-1.fc43 mrtrix3-debuginfo(aarch-64) = 3.0.8-1.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: mrtrix3-debugsource(aarch-64) = 3.0.8-1.fc43 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Wrote: /builddir/build/RPMS/mrtrix3-debugsource-3.0.8-1.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/mrtrix3-3.0.8-1.fc43.aarch64.rpm Wrote: /builddir/build/RPMS/mrtrix3-debuginfo-3.0.8-1.fc43.aarch64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.0mAoT6 + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + test -d /builddir/build/BUILD/mrtrix3-3.0.8-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mrtrix3-3.0.8-build + rm -rf /builddir/build/BUILD/mrtrix3-3.0.8-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Finish: rpmbuild mrtrix3-3.0.8-1.fc43.src.rpm Finish: build phase for mrtrix3-3.0.8-1.fc43.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-43-aarch64-1770510917.736673/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-1.fc43.src.rpm) Config(child) 515 minutes 44 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "1.fc43", "arch": "aarch64" }, { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "1.fc43", "arch": "src" }, { "name": "mrtrix3-debuginfo", "epoch": null, "version": "3.0.8", "release": "1.fc43", "arch": "aarch64" }, { "name": "mrtrix3-debugsource", "epoch": null, "version": "3.0.8", "release": "1.fc43", "arch": "aarch64" } ] } RPMResults finished