Warning: Permanently added '2620:52:6:1161:dead:beef:cafe:c156' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10066101-epel-9-ppc64le --chroot epel-9-ppc64le


Version: 1.6
PID: 2551
Logging PID: 2553
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'build_id': 10066101,
 'buildroot_pkgs': [],
 'chroot': 'epel-9-ppc64le',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '9259b83ba3c13f287b9f14ef174a4b8fa42e34f8',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ron/bioinformatics/samtools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'samtools',
 'package_version': '1.23-1',
 'project_dirname': 'bioinformatics',
 'project_name': 'bioinformatics',
 'project_owner': 'ron',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ron/bioinformatics/epel-9-ppc64le/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'ron/bioinformatics--ron',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'ron',
 'tags': ['arch_power9'],
 'task_id': '10066101-epel-9-ppc64le',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ron/bioinformatics/samtools /var/lib/copr-rpmbuild/workspace/workdir-vxctcizq/samtools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ron/bioinformatics/samtools', '/var/lib/copr-rpmbuild/workspace/workdir-vxctcizq/samtools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-vxctcizq/samtools'...

Running: git checkout 9259b83ba3c13f287b9f14ef174a4b8fa42e34f8 --

cmd: ['git', 'checkout', '9259b83ba3c13f287b9f14ef174a4b8fa42e34f8', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-vxctcizq/samtools
rc: 0
stdout: 
stderr: Note: switching to '9259b83ba3c13f287b9f14ef174a4b8fa42e34f8'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 9259b83 automatic import of samtools

Running: dist-git-client sources
tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-vxctcizq/samtools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading samtools-1.23.tar.bz2
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o samtools-1.23.tar.bz2 --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ron/bioinformatics/samtools/samtools-1.23.tar.bz2/md5/7ce93103e5a3796c0009f879853837bb/samtools-1.23.tar.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 9138k  100 9138k    0     0  37.0M      0 --:--:-- --:--:-- --:--:-- 37.1M
INFO: Reading stdout from command: md5sum samtools-1.23.tar.bz2

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vxctcizq/samtools/samtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vxctcizq/samtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1769501919.064289 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.6 starting (python version = 3.14.2, NVR = mock-6.6-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vxctcizq/samtools/samtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vxctcizq/samtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1769501919.064289 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-vxctcizq/samtools/samtools.spec)  Config(rhel+epel-9-ppc64le)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.6
INFO: Mock Version: 6.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-ppc64le-bootstrap-1769501919.064289/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.access.redhat.com/ubi9/ubi
INFO: Pulling image: registry.access.redhat.com/ubi9/ubi
INFO: Tagging container image as mock-bootstrap-7fb1b068-2c35-42ad-a538-758112221f6a
INFO: Checking that bcd7d46e5c0dd1b6fd6f9b44ecfafe2c5f49c1cd180c5fb4b4332203269b1697 image matches host's architecture
INFO: Copy content of container bcd7d46e5c0dd1b6fd6f9b44ecfafe2c5f49c1cd180c5fb4b4332203269b1697 to /var/lib/mock/rhel+epel-9-ppc64le-bootstrap-1769501919.064289/root
INFO: mounting bcd7d46e5c0dd1b6fd6f9b44ecfafe2c5f49c1cd180c5fb4b4332203269b1697 with podman image mount
INFO: image bcd7d46e5c0dd1b6fd6f9b44ecfafe2c5f49c1cd180c5fb4b4332203269b1697 as /var/lib/containers/storage/overlay/69fd9b0c33d7673e83121827a635d8fc1b00df4355c4052ef06db4d71387d1f4/merged
INFO: umounting image bcd7d46e5c0dd1b6fd6f9b44ecfafe2c5f49c1cd180c5fb4b4332203269b1697 (/var/lib/containers/storage/overlay/69fd9b0c33d7673e83121827a635d8fc1b00df4355c4052ef06db4d71387d1f4/merged) with podman image umount
INFO: Removing image mock-bootstrap-7fb1b068-2c35-42ad-a538-758112221f6a
INFO: Package manager dnf4 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-ppc64le-1769501919.064289/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf4 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.16.1.3-39.el9.ppc64le
  python3-dnf-4.14.0-31.el9.noarch
  python3-dnf-plugins-core-4.3.0-24.el9_7.noarch
  yum-4.14.0-31.el9.noarch
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                 7.3 kB/s | 4.8 kB     00:00    
Red Hat Enterprise Linux - BaseOS                40 MB/s |  59 MB     00:01    
Red Hat Enterprise Linux - AppStream             70 MB/s |  71 MB     00:01    
Red Hat Enterprise Linux - CodeReady Linux Buil  27 MB/s |  13 MB     00:00    
Extra Packages for Enterprise Linux 9 - ppc64le 332 kB/s |  20 MB     01:00    
Dependencies resolved.
================================================================================
 Package                    Arch    Version                     Repo       Size
================================================================================
Installing:
 bash                       ppc64le 5.1.8-9.el9                 baseos    1.7 M
 bzip2                      ppc64le 1.0.8-10.el9_5              baseos     60 k
 coreutils                  ppc64le 8.32-39.el9                 baseos    1.2 M
 cpio                       ppc64le 2.13-16.el9                 baseos    286 k
 diffutils                  ppc64le 3.7-12.el9                  baseos    417 k
 epel-rpm-macros            noarch  9-17.el9                    epel       15 k
 findutils                  ppc64le 1:4.8.0-7.el9               baseos    589 k
 gawk                       ppc64le 5.1.0-6.el9                 baseos    1.0 M
 glibc-minimal-langpack     ppc64le 2.34-231.el9_7.2            baseos     22 k
 grep                       ppc64le 3.6-5.el9                   baseos    281 k
 gzip                       ppc64le 1.12-1.el9                  baseos    172 k
 info                       ppc64le 6.7-15.el9                  baseos    256 k
 patch                      ppc64le 2.7.6-16.el9                appstream 140 k
 redhat-release             ppc64le 9.7-0.7.el9                 baseos     53 k
 redhat-rpm-config          noarch  210-1.el9                   appstream  70 k
 rpm-build                  ppc64le 4.16.1.3-39.el9             appstream  67 k
 sed                        ppc64le 4.8-9.el9                   baseos    315 k
 tar                        ppc64le 2:1.34-9.el9_7              baseos    916 k
 unzip                      ppc64le 6.0-59.el9                  baseos    186 k
 util-linux                 ppc64le 2.37.4-21.el9               baseos    2.3 M
 which                      ppc64le 2.21-30.el9_6               baseos     42 k
 xz                         ppc64le 5.2.5-8.el9_0               baseos    238 k
Installing dependencies:
 alternatives               ppc64le 1.24-2.el9                  baseos     43 k
 ansible-srpm-macros        noarch  1-16.el9                    epel       21 k
 audit-libs                 ppc64le 3.1.5-7.el9                 baseos    137 k
 basesystem                 noarch  11-13.el9                   baseos    8.0 k
 binutils                   ppc64le 2.35.2-67.el9_7.1           baseos    5.0 M
 binutils-gold              ppc64le 2.35.2-67.el9_7.1           baseos    1.0 M
 bzip2-libs                 ppc64le 1.0.8-10.el9_5              baseos     46 k
 ca-certificates            noarch  2025.2.80_v9.0.305-91.el9   baseos    1.0 M
 coreutils-common           ppc64le 8.32-39.el9                 baseos    2.0 M
 cracklib                   ppc64le 2.9.6-27.el9                baseos    100 k
 cracklib-dicts             ppc64le 2.9.6-27.el9                baseos    3.6 M
 crypto-policies            noarch  20250905-1.git377cc42.el9_7 baseos     90 k
 curl                       ppc64le 7.76.1-34.el9               baseos    295 k
 cyrus-sasl-lib             ppc64le 2.1.27-22.el9               baseos    856 k
 debugedit                  ppc64le 5.0-11.el9                  appstream  81 k
 dwz                        ppc64le 0.16-1.el9                  appstream 140 k
 ed                         ppc64le 1.14.2-12.el9               baseos     81 k
 efi-srpm-macros            noarch  6-4.el9                     appstream  21 k
 elfutils                   ppc64le 0.193-1.el9                 baseos    601 k
 elfutils-debuginfod-client ppc64le 0.193-1.el9                 baseos     46 k
 elfutils-default-yama-scope
                            noarch  0.193-1.el9                 baseos    9.7 k
 elfutils-libelf            ppc64le 0.193-1.el9                 baseos    211 k
 elfutils-libs              ppc64le 0.193-1.el9                 baseos    305 k
 file                       ppc64le 5.39-16.el9                 baseos     52 k
 file-libs                  ppc64le 5.39-16.el9                 baseos    604 k
 filesystem                 ppc64le 3.16-5.el9                  baseos    4.8 M
 fonts-srpm-macros          noarch  1:2.0.5-7.el9.1             appstream  29 k
 forge-srpm-macros          noarch  0.4.0-1.el9                 epel       19 k
 fpc-srpm-macros            noarch  1.3-7.el9                   epel      7.5 k
 gdb-minimal                ppc64le 16.3-2.el9                  appstream 4.6 M
 gdbm-libs                  ppc64le 1:1.23-1.el9                baseos     64 k
 ghc-srpm-macros            noarch  1.5.0-6.el9                 appstream 9.0 k
 ghc-srpm-macros-epel       noarch  1.9.1-1.el9                 epel      7.5 k
 glibc                      ppc64le 2.34-231.el9_7.2            baseos    2.7 M
 glibc-common               ppc64le 2.34-231.el9_7.2            baseos    323 k
 glibc-gconv-extra          ppc64le 2.34-231.el9_7.2            baseos    1.7 M
 gmp                        ppc64le 1:6.2.0-13.el9              baseos    305 k
 go-srpm-macros             noarch  3.6.0-12.el9_7              appstream  27 k
 go-srpm-macros-epel        noarch  3.8.0-1.el9                 epel       26 k
 groff-base                 ppc64le 1.22.4-10.el9               baseos    1.1 M
 json-c                     ppc64le 0.14-11.el9                 baseos     48 k
 kernel-srpm-macros         noarch  1.0-14.el9                  appstream  14 k
 keyutils-libs              ppc64le 1.6.3-1.el9                 baseos     35 k
 krb5-libs                  ppc64le 1.21.1-8.el9_6              baseos    846 k
 libacl                     ppc64le 2.3.1-4.el9                 baseos     26 k
 libarchive                 ppc64le 3.5.3-6.el9_6               baseos    454 k
 libattr                    ppc64le 2.5.1-3.el9                 baseos     21 k
 libblkid                   ppc64le 2.37.4-21.el9               baseos    125 k
 libbrotli                  ppc64le 1.0.9-7.el9_5               baseos    339 k
 libcap                     ppc64le 2.48-10.el9                 baseos     74 k
 libcap-ng                  ppc64le 0.8.2-7.el9                 baseos     37 k
 libcom_err                 ppc64le 1.46.5-8.el9                baseos     27 k
 libcurl                    ppc64le 7.76.1-34.el9               baseos    314 k
 libdb                      ppc64le 5.3.28-57.el9_6             baseos    817 k
 libeconf                   ppc64le 0.4.1-4.el9                 baseos     32 k
 libevent                   ppc64le 2.1.12-8.el9_4              baseos    281 k
 libfdisk                   ppc64le 2.37.4-21.el9               baseos    170 k
 libffi                     ppc64le 3.4.2-8.el9                 baseos     40 k
 libgcc                     ppc64le 11.5.0-11.el9               baseos     74 k
 libgcrypt                  ppc64le 1.10.0-11.el9               baseos    599 k
 libgomp                    ppc64le 11.5.0-11.el9               baseos    269 k
 libgpg-error               ppc64le 1.42-5.el9                  baseos    229 k
 libidn2                    ppc64le 2.3.0-7.el9                 baseos    108 k
 libmount                   ppc64le 2.37.4-21.el9               baseos    153 k
 libnghttp2                 ppc64le 1.43.0-6.el9                baseos     84 k
 libpkgconf                 ppc64le 1.7.3-10.el9                baseos     42 k
 libpsl                     ppc64le 0.21.1-5.el9                baseos     68 k
 libpwquality               ppc64le 1.4.4-8.el9                 baseos    125 k
 librtas                    ppc64le 2.0.6-1.el9                 baseos     84 k
 libselinux                 ppc64le 3.6-3.el9                   baseos    100 k
 libsemanage                ppc64le 3.6-5.el9_6                 baseos    133 k
 libsepol                   ppc64le 3.6-3.el9                   baseos    366 k
 libsigsegv                 ppc64le 2.13-4.el9                  baseos     31 k
 libsmartcols               ppc64le 2.37.4-21.el9               baseos     70 k
 libssh                     ppc64le 0.10.4-17.el9_7             baseos    238 k
 libssh-config              noarch  0.10.4-17.el9_7             baseos    8.1 k
 libstdc++                  ppc64le 11.5.0-11.el9               baseos    837 k
 libtasn1                   ppc64le 4.16.0-9.el9                baseos     82 k
 libtool-ltdl               ppc64le 2.4.6-46.el9                baseos     41 k
 libunistring               ppc64le 0.9.10-15.el9               baseos    507 k
 libutempter                ppc64le 1.2.1-6.el9                 baseos     30 k
 libuuid                    ppc64le 2.37.4-21.el9               baseos     32 k
 libverto                   ppc64le 0.3.2-3.el9                 baseos     25 k
 libxcrypt                  ppc64le 4.4.18-3.el9                baseos    133 k
 libxml2                    ppc64le 2.9.13-14.el9_7             baseos    823 k
 libzstd                    ppc64le 1.5.5-1.el9                 baseos    322 k
 lua-libs                   ppc64le 5.4.4-4.el9                 baseos    149 k
 lua-srpm-macros            noarch  1-6.el9                     appstream  10 k
 lz4-libs                   ppc64le 1.9.3-5.el9                 baseos     88 k
 mpfr                       ppc64le 4.1.0-7.el9                 baseos    324 k
 ncurses                    ppc64le 6.2-12.20210508.el9         baseos    413 k
 ncurses-base               noarch  6.2-12.20210508.el9         baseos     96 k
 ncurses-libs               ppc64le 6.2-12.20210508.el9         baseos    370 k
 ocaml-srpm-macros          noarch  6-6.el9                     appstream 9.1 k
 openblas-srpm-macros       noarch  2-11.el9                    appstream 8.6 k
 openldap                   ppc64le 2.6.8-4.el9                 baseos    322 k
 openssl                    ppc64le 1:3.5.1-5.el9_7             baseos    1.5 M
 openssl-fips-provider      ppc64le 3.0.7-8.el9                 baseos    9.2 k
 openssl-fips-provider-so   ppc64le 3.0.7-8.el9                 baseos    563 k
 openssl-libs               ppc64le 1:3.5.1-5.el9_7             baseos    2.4 M
 p11-kit                    ppc64le 0.25.3-3.el9_5              baseos    535 k
 p11-kit-trust              ppc64le 0.25.3-3.el9_5              baseos    157 k
 pam                        ppc64le 1.5.1-26.el9_6              baseos    662 k
 pcre                       ppc64le 8.44-4.el9                  baseos    203 k
 pcre2                      ppc64le 10.40-6.el9                 baseos    237 k
 pcre2-syntax               noarch  10.40-6.el9                 baseos    144 k
 perl-AutoLoader            noarch  5.74-481.1.el9_6            appstream  21 k
 perl-B                     ppc64le 1.80-481.1.el9_6            appstream 183 k
 perl-Carp                  noarch  1.50-460.el9                appstream  31 k
 perl-Class-Struct          noarch  0.66-481.1.el9_6            appstream  22 k
 perl-Data-Dumper           ppc64le 2.174-462.el9               appstream  59 k
 perl-Digest                noarch  1.19-4.el9                  appstream  29 k
 perl-Digest-MD5            ppc64le 2.58-4.el9                  appstream  40 k
 perl-Encode                ppc64le 4:3.08-462.el9              appstream 1.7 M
 perl-Errno                 ppc64le 1.30-481.1.el9_6            appstream  14 k
 perl-Exporter              noarch  5.74-461.el9                appstream  34 k
 perl-Fcntl                 ppc64le 1.13-481.1.el9_6            appstream  20 k
 perl-File-Basename         noarch  2.85-481.1.el9_6            appstream  17 k
 perl-File-Path             noarch  2.18-4.el9                  appstream  38 k
 perl-File-Temp             noarch  1:0.231.100-4.el9           appstream  63 k
 perl-File-stat             noarch  1.09-481.1.el9_6            appstream  17 k
 perl-FileHandle            noarch  2.03-481.1.el9_6            appstream  15 k
 perl-Getopt-Long           noarch  1:2.52-4.el9                appstream  64 k
 perl-Getopt-Std            noarch  1.12-481.1.el9_6            appstream  15 k
 perl-HTTP-Tiny             noarch  0.076-462.el9               appstream  57 k
 perl-IO                    ppc64le 1.43-481.1.el9_6            appstream  89 k
 perl-IO-Socket-IP          noarch  0.41-5.el9                  appstream  45 k
 perl-IO-Socket-SSL         noarch  2.073-2.el9                 appstream 221 k
 perl-IPC-Open3             noarch  1.21-481.1.el9_6            appstream  22 k
 perl-MIME-Base64           ppc64le 3.16-4.el9                  appstream  35 k
 perl-Mozilla-CA            noarch  20200520-6.el9              appstream  14 k
 perl-Net-SSLeay            ppc64le 1.94-3.el9                  appstream 423 k
 perl-POSIX                 ppc64le 1.94-481.1.el9_6            appstream  98 k
 perl-PathTools             ppc64le 3.78-461.el9                appstream  93 k
 perl-Pod-Escapes           noarch  1:1.07-460.el9              appstream  22 k
 perl-Pod-Perldoc           noarch  3.28.01-461.el9             appstream  92 k
 perl-Pod-Simple            noarch  1:3.42-4.el9                appstream 229 k
 perl-Pod-Usage             noarch  4:2.01-4.el9                appstream  43 k
 perl-Scalar-List-Utils     ppc64le 4:1.56-462.el9              appstream  78 k
 perl-SelectSaver           noarch  1.02-481.1.el9_6            appstream  11 k
 perl-Socket                ppc64le 4:2.031-4.el9               appstream  59 k
 perl-Storable              ppc64le 1:3.21-460.el9              appstream 101 k
 perl-Symbol                noarch  1.08-481.1.el9_6            appstream  14 k
 perl-Term-ANSIColor        noarch  5.01-461.el9                appstream  51 k
 perl-Term-Cap              noarch  1.17-460.el9                appstream  24 k
 perl-Text-ParseWords       noarch  3.30-460.el9                appstream  18 k
 perl-Text-Tabs+Wrap        noarch  2013.0523-460.el9           appstream  25 k
 perl-Time-Local            noarch  2:1.300-7.el9               appstream  37 k
 perl-URI                   noarch  5.09-3.el9                  appstream 125 k
 perl-base                  noarch  2.27-481.1.el9_6            appstream  16 k
 perl-constant              noarch  1.33-461.el9                appstream  25 k
 perl-if                    noarch  0.60.800-481.1.el9_6        appstream  14 k
 perl-interpreter           ppc64le 4:5.32.1-481.1.el9_6        appstream  70 k
 perl-libnet                noarch  3.13-4.el9                  appstream 134 k
 perl-libs                  ppc64le 4:5.32.1-481.1.el9_6        appstream 2.3 M
 perl-mro                   ppc64le 1.23-481.1.el9_6            appstream  28 k
 perl-overload              noarch  1.31-481.1.el9_6            appstream  45 k
 perl-overloading           noarch  0.02-481.1.el9_6            appstream  12 k
 perl-parent                noarch  1:0.238-460.el9             appstream  16 k
 perl-podlators             noarch  1:4.14-460.el9              appstream 118 k
 perl-srpm-macros           noarch  1-41.el9                    appstream 9.4 k
 perl-subs                  noarch  1.03-481.1.el9_6            appstream  11 k
 perl-vars                  noarch  1.05-481.1.el9_6            appstream  13 k
 pkgconf                    ppc64le 1.7.3-10.el9                baseos     45 k
 pkgconf-m4                 noarch  1.7.3-10.el9                baseos     16 k
 pkgconf-pkg-config         ppc64le 1.7.3-10.el9                baseos     12 k
 popt                       ppc64le 1.18-8.el9                  baseos     73 k
 publicsuffix-list-dafsa    noarch  20210518-3.el9              baseos     59 k
 pyproject-srpm-macros      noarch  1.16.2-1.el9                appstream  14 k
 python-srpm-macros         noarch  3.9-54.el9                  appstream  18 k
 qt5-srpm-macros            noarch  5.15.9-1.el9                appstream 9.1 k
 qt6-srpm-macros            noarch  6.6.2-1.el9                 epel      8.7 k
 readline                   ppc64le 8.1-4.el9                   baseos    231 k
 rpm                        ppc64le 4.16.1.3-39.el9             baseos    534 k
 rpm-build-libs             ppc64le 4.16.1.3-39.el9             baseos     96 k
 rpm-libs                   ppc64le 4.16.1.3-39.el9             baseos    351 k
 rpmautospec-rpm-macros     noarch  0.8.1-11.el9                epel       11 k
 rust-srpm-macros           noarch  17-4.el9                    appstream  11 k
 rust-srpm-macros-epel      noarch  26.3-1.el9                  epel       10 k
 setup                      noarch  2.13.7-10.el9               baseos    150 k
 shadow-utils               ppc64le 2:4.9-15.el9                baseos    1.2 M
 sqlite-libs                ppc64le 3.34.1-9.el9_7              baseos    731 k
 systemd-libs               ppc64le 252-55.el9_7.7              baseos    708 k
 tzdata                     noarch  2025c-1.el9                 baseos    904 k
 util-linux-core            ppc64le 2.37.4-21.el9               baseos    488 k
 xz-libs                    ppc64le 5.2.5-8.el9_0               baseos    117 k
 zip                        ppc64le 3.0-35.el9                  baseos    276 k
 zlib                       ppc64le 1.2.11-40.el9               baseos    104 k
 zstd                       ppc64le 1.5.5-1.el9                 baseos    407 k

Transaction Summary
================================================================================
Install  211 Packages

Total download size: 73 M
Installed size: 276 M
Downloading Packages:
(1/211): cpio-2.13-16.el9.ppc64le.rpm           887 kB/s | 286 kB     00:00    
(2/211): basesystem-11-13.el9.noarch.rpm         18 kB/s | 8.0 kB     00:00    
(3/211): cracklib-2.9.6-27.el9.ppc64le.rpm      210 kB/s | 100 kB     00:00    
(4/211): cracklib-dicts-2.9.6-27.el9.ppc64le.rp  18 MB/s | 3.6 MB     00:00    
(5/211): ed-1.14.2-12.el9.ppc64le.rpm           878 kB/s |  81 kB     00:00    
(6/211): diffutils-3.7-12.el9.ppc64le.rpm       3.0 MB/s | 417 kB     00:00    
(7/211): gawk-5.1.0-6.el9.ppc64le.rpm           8.1 MB/s | 1.0 MB     00:00    
(8/211): grep-3.6-5.el9.ppc64le.rpm             2.7 MB/s | 281 kB     00:00    
(9/211): groff-base-1.22.4-10.el9.ppc64le.rpm   9.6 MB/s | 1.1 MB     00:00    
(10/211): info-6.7-15.el9.ppc64le.rpm           2.8 MB/s | 256 kB     00:00    
(11/211): json-c-0.14-11.el9.ppc64le.rpm        577 kB/s |  48 kB     00:00    
(12/211): libattr-2.5.1-3.el9.ppc64le.rpm       178 kB/s |  21 kB     00:00    
(13/211): libcap-ng-0.8.2-7.el9.ppc64le.rpm     359 kB/s |  37 kB     00:00    
(14/211): libgpg-error-1.42-5.el9.ppc64le.rpm   2.5 MB/s | 229 kB     00:00    
(15/211): libidn2-2.3.0-7.el9.ppc64le.rpm       1.2 MB/s | 108 kB     00:00    
(16/211): libpsl-0.21.1-5.el9.ppc64le.rpm       733 kB/s |  68 kB     00:00    
(17/211): libpwquality-1.4.4-8.el9.ppc64le.rpm  1.4 MB/s | 125 kB     00:00    
(18/211): libsigsegv-2.13-4.el9.ppc64le.rpm     354 kB/s |  31 kB     00:00    
(19/211): libutempter-1.2.1-6.el9.ppc64le.rpm   343 kB/s |  30 kB     00:00    
(20/211): libunistring-0.9.10-15.el9.ppc64le.rp 5.0 MB/s | 507 kB     00:00    
(21/211): libverto-0.3.2-3.el9.ppc64le.rpm      286 kB/s |  25 kB     00:00    
(22/211): libxcrypt-4.4.18-3.el9.ppc64le.rpm    1.4 MB/s | 133 kB     00:00    
(23/211): lz4-libs-1.9.3-5.el9.ppc64le.rpm      1.0 MB/s |  88 kB     00:00    
(24/211): mpfr-4.1.0-7.el9.ppc64le.rpm          2.6 MB/s | 324 kB     00:00    
(25/211): popt-1.18-8.el9.ppc64le.rpm           833 kB/s |  73 kB     00:00    
(26/211): publicsuffix-list-dafsa-20210518-3.el 673 kB/s |  59 kB     00:00    
(27/211): sed-4.8-9.el9.ppc64le.rpm             3.4 MB/s | 315 kB     00:00    
(28/211): readline-8.1-4.el9.ppc64le.rpm        2.3 MB/s | 231 kB     00:00    
(29/211): xz-5.2.5-8.el9_0.ppc64le.rpm          2.5 MB/s | 238 kB     00:00    
(30/211): xz-libs-5.2.5-8.el9_0.ppc64le.rpm     1.3 MB/s | 117 kB     00:00    
(31/211): gzip-1.12-1.el9.ppc64le.rpm           1.9 MB/s | 172 kB     00:00    
(32/211): keyutils-libs-1.6.3-1.el9.ppc64le.rpm 396 kB/s |  35 kB     00:00    
(33/211): libpkgconf-1.7.3-10.el9.ppc64le.rpm   485 kB/s |  42 kB     00:00    
(34/211): pkgconf-m4-1.7.3-10.el9.noarch.rpm    187 kB/s |  16 kB     00:00    
(35/211): pkgconf-1.7.3-10.el9.ppc64le.rpm      500 kB/s |  45 kB     00:00    
(36/211): pkgconf-pkg-config-1.7.3-10.el9.ppc64 138 kB/s |  12 kB     00:00    
(37/211): zip-3.0-35.el9.ppc64le.rpm            3.0 MB/s | 276 kB     00:00    
(38/211): gmp-6.2.0-13.el9.ppc64le.rpm          3.3 MB/s | 305 kB     00:00    
(39/211): libffi-3.4.2-8.el9.ppc64le.rpm        466 kB/s |  40 kB     00:00    
(40/211): lua-libs-5.4.4-4.el9.ppc64le.rpm      1.7 MB/s | 149 kB     00:00    
(41/211): zlib-1.2.11-40.el9.ppc64le.rpm        1.1 MB/s | 104 kB     00:00    
(42/211): file-5.39-16.el9.ppc64le.rpm          621 kB/s |  52 kB     00:00    
(43/211): bash-5.1.8-9.el9.ppc64le.rpm           14 MB/s | 1.7 MB     00:00    
(44/211): file-libs-5.39-16.el9.ppc64le.rpm     5.2 MB/s | 604 kB     00:00    
(45/211): libacl-2.3.1-4.el9.ppc64le.rpm        310 kB/s |  26 kB     00:00    
(46/211): setup-2.13.7-10.el9.noarch.rpm        1.6 MB/s | 150 kB     00:00    
(47/211): libevent-2.1.12-8.el9_4.ppc64le.rpm   3.0 MB/s | 281 kB     00:00    
(48/211): bzip2-1.0.8-10.el9_5.ppc64le.rpm      701 kB/s |  60 kB     00:00    
(49/211): bzip2-libs-1.0.8-10.el9_5.ppc64le.rpm 433 kB/s |  46 kB     00:00    
(50/211): findutils-4.8.0-7.el9.ppc64le.rpm     5.3 MB/s | 589 kB     00:00    
(51/211): filesystem-3.16-5.el9.ppc64le.rpm      26 MB/s | 4.8 MB     00:00    
(52/211): gdbm-libs-1.23-1.el9.ppc64le.rpm      709 kB/s |  64 kB     00:00    
(53/211): libbrotli-1.0.9-7.el9_5.ppc64le.rpm   3.7 MB/s | 339 kB     00:00    
(54/211): libeconf-0.4.1-4.el9.ppc64le.rpm      363 kB/s |  32 kB     00:00    
(55/211): libgcrypt-1.10.0-11.el9.ppc64le.rpm   6.1 MB/s | 599 kB     00:00    
(56/211): libnghttp2-1.43.0-6.el9.ppc64le.rpm   928 kB/s |  84 kB     00:00    
(57/211): librtas-2.0.6-1.el9.ppc64le.rpm       957 kB/s |  84 kB     00:00    
(58/211): p11-kit-0.25.3-3.el9_5.ppc64le.rpm    5.4 MB/s | 535 kB     00:00    
(59/211): p11-kit-trust-0.25.3-3.el9_5.ppc64le. 1.8 MB/s | 157 kB     00:00    
(60/211): pcre-8.44-4.el9.ppc64le.rpm           2.2 MB/s | 203 kB     00:00    
(61/211): pcre2-10.40-6.el9.ppc64le.rpm         2.7 MB/s | 237 kB     00:00    
(62/211): pcre2-syntax-10.40-6.el9.noarch.rpm   1.6 MB/s | 144 kB     00:00    
(63/211): alternatives-1.24-2.el9.ppc64le.rpm   500 kB/s |  43 kB     00:00    
(64/211): coreutils-common-8.32-39.el9.ppc64le.  18 MB/s | 2.0 MB     00:00    
(65/211): libfdisk-2.37.4-21.el9.ppc64le.rpm    1.9 MB/s | 170 kB     00:00    
(66/211): libmount-2.37.4-21.el9.ppc64le.rpm    1.6 MB/s | 153 kB     00:00    
(67/211): libselinux-3.6-3.el9.ppc64le.rpm      1.1 MB/s | 100 kB     00:00    
(68/211): libsemanage-3.6-5.el9_6.ppc64le.rpm   1.5 MB/s | 133 kB     00:00    
(69/211): libsmartcols-2.37.4-21.el9.ppc64le.rp 799 kB/s |  70 kB     00:00    
(70/211): libtool-ltdl-2.4.6-46.el9.ppc64le.rpm 477 kB/s |  41 kB     00:00    
(71/211): libzstd-1.5.5-1.el9.ppc64le.rpm       3.4 MB/s | 322 kB     00:00    
(72/211): openldap-2.6.8-4.el9.ppc64le.rpm      3.3 MB/s | 322 kB     00:00    
(73/211): util-linux-core-2.37.4-21.el9.ppc64le 5.0 MB/s | 488 kB     00:00    
(74/211): util-linux-2.37.4-21.el9.ppc64le.rpm   19 MB/s | 2.3 MB     00:00    
(75/211): zstd-1.5.5-1.el9.ppc64le.rpm          4.2 MB/s | 407 kB     00:00    
(76/211): coreutils-8.32-39.el9.ppc64le.rpm      12 MB/s | 1.2 MB     00:00    
(77/211): krb5-libs-1.21.1-8.el9_6.ppc64le.rpm  8.6 MB/s | 846 kB     00:00    
(78/211): libblkid-2.37.4-21.el9.ppc64le.rpm    1.4 MB/s | 125 kB     00:00    
(79/211): libdb-5.3.28-57.el9_6.ppc64le.rpm     8.3 MB/s | 817 kB     00:00    
(80/211): libtasn1-4.16.0-9.el9.ppc64le.rpm     947 kB/s |  82 kB     00:00    
(81/211): libuuid-2.37.4-21.el9.ppc64le.rpm     369 kB/s |  32 kB     00:00    
(82/211): libarchive-3.5.3-6.el9_6.ppc64le.rpm  4.9 MB/s | 454 kB     00:00    
(83/211): pam-1.5.1-26.el9_6.ppc64le.rpm        6.9 MB/s | 662 kB     00:00    
(84/211): which-2.21-30.el9_6.ppc64le.rpm       469 kB/s |  42 kB     00:00    
(85/211): audit-libs-3.1.5-7.el9.ppc64le.rpm    1.6 MB/s | 137 kB     00:00    
(86/211): crypto-policies-20250905-1.git377cc42 1.0 MB/s |  90 kB     00:00    
(87/211): curl-7.76.1-34.el9.ppc64le.rpm        3.2 MB/s | 295 kB     00:00    
(88/211): cyrus-sasl-lib-2.1.27-22.el9.ppc64le. 8.4 MB/s | 856 kB     00:00    
(89/211): elfutils-0.193-1.el9.ppc64le.rpm      6.1 MB/s | 601 kB     00:00    
(90/211): elfutils-debuginfod-client-0.193-1.el 546 kB/s |  46 kB     00:00    
(91/211): elfutils-default-yama-scope-0.193-1.e 116 kB/s | 9.7 kB     00:00    
(92/211): elfutils-libelf-0.193-1.el9.ppc64le.r 2.3 MB/s | 211 kB     00:00    
(93/211): elfutils-libs-0.193-1.el9.ppc64le.rpm 3.2 MB/s | 305 kB     00:00    
(94/211): libcap-2.48-10.el9.ppc64le.rpm        829 kB/s |  74 kB     00:00    
(95/211): libcom_err-1.46.5-8.el9.ppc64le.rpm   310 kB/s |  27 kB     00:00    
(96/211): libcurl-7.76.1-34.el9.ppc64le.rpm     3.2 MB/s | 314 kB     00:00    
(97/211): libgcc-11.5.0-11.el9.ppc64le.rpm      854 kB/s |  74 kB     00:00    
(98/211): libgomp-11.5.0-11.el9.ppc64le.rpm     3.0 MB/s | 269 kB     00:00    
(99/211): libsepol-3.6-3.el9.ppc64le.rpm        3.8 MB/s | 366 kB     00:00    
(100/211): libstdc++-11.5.0-11.el9.ppc64le.rpm  8.4 MB/s | 837 kB     00:00    
(101/211): ncurses-6.2-12.20210508.el9.ppc64le. 4.3 MB/s | 413 kB     00:00    
(102/211): ncurses-base-6.2-12.20210508.el9.noa 1.1 MB/s |  96 kB     00:00    
(103/211): openssl-fips-provider-3.0.7-8.el9.pp 111 kB/s | 9.2 kB     00:00    
(104/211): ncurses-libs-6.2-12.20210508.el9.ppc 3.9 MB/s | 370 kB     00:00    
(105/211): openssl-fips-provider-so-3.0.7-8.el9 5.8 MB/s | 563 kB     00:00    
(106/211): rpm-build-libs-4.16.1.3-39.el9.ppc64 1.1 MB/s |  96 kB     00:00    
(107/211): rpm-4.16.1.3-39.el9.ppc64le.rpm      5.3 MB/s | 534 kB     00:00    
(108/211): rpm-libs-4.16.1.3-39.el9.ppc64le.rpm 3.7 MB/s | 351 kB     00:00    
(109/211): unzip-6.0-59.el9.ppc64le.rpm         2.1 MB/s | 186 kB     00:00    
(110/211): shadow-utils-4.9-15.el9.ppc64le.rpm   11 MB/s | 1.2 MB     00:00    
(111/211): glibc-2.34-231.el9_7.2.ppc64le.rpm    19 MB/s | 2.7 MB     00:00    
(112/211): glibc-common-2.34-231.el9_7.2.ppc64l 3.5 MB/s | 323 kB     00:00    
(113/211): glibc-gconv-extra-2.34-231.el9_7.2.p  15 MB/s | 1.7 MB     00:00    
(114/211): glibc-minimal-langpack-2.34-231.el9_ 250 kB/s |  22 kB     00:00    
(115/211): redhat-release-9.7-0.7.el9.ppc64le.r 627 kB/s |  53 kB     00:00    
(116/211): sqlite-libs-3.34.1-9.el9_7.ppc64le.r 6.9 MB/s | 731 kB     00:00    
(117/211): libxml2-2.9.13-14.el9_7.ppc64le.rpm  7.9 MB/s | 823 kB     00:00    
(118/211): ca-certificates-2025.2.80_v9.0.305-9 8.6 MB/s | 1.0 MB     00:00    
(119/211): systemd-libs-252-55.el9_7.7.ppc64le. 6.9 MB/s | 708 kB     00:00    
(120/211): tzdata-2025c-1.el9.noarch.rpm        8.9 MB/s | 904 kB     00:00    
(121/211): libssh-0.10.4-17.el9_7.ppc64le.rpm   2.5 MB/s | 238 kB     00:00    
(122/211): libssh-config-0.10.4-17.el9_7.noarch  93 kB/s | 8.1 kB     00:00    
(123/211): binutils-gold-2.35.2-67.el9_7.1.ppc6 9.1 MB/s | 1.0 MB     00:00    
(124/211): tar-1.34-9.el9_7.ppc64le.rpm         8.4 MB/s | 916 kB     00:00    
(125/211): binutils-2.35.2-67.el9_7.1.ppc64le.r  25 MB/s | 5.0 MB     00:00    
(126/211): openssl-3.5.1-5.el9_7.ppc64le.rpm     13 MB/s | 1.5 MB     00:00    
(127/211): openssl-libs-3.5.1-5.el9_7.ppc64le.r  20 MB/s | 2.4 MB     00:00    
(128/211): perl-Encode-3.08-462.el9.ppc64le.rpm  16 MB/s | 1.7 MB     00:00    
(129/211): perl-Exporter-5.74-461.el9.noarch.rp 360 kB/s |  34 kB     00:00    
(130/211): perl-File-Temp-0.231.100-4.el9.noarc 545 kB/s |  63 kB     00:00    
(131/211): perl-MIME-Base64-3.16-4.el9.ppc64le. 412 kB/s |  35 kB     00:00    
(132/211): perl-Mozilla-CA-20200520-6.el9.noarc 139 kB/s |  14 kB     00:00    
(133/211): perl-Socket-2.031-4.el9.ppc64le.rpm  676 kB/s |  59 kB     00:00    
(134/211): perl-Term-Cap-1.17-460.el9.noarch.rp 283 kB/s |  24 kB     00:00    
(135/211): perl-Time-Local-1.300-7.el9.noarch.r 423 kB/s |  37 kB     00:00    
(136/211): perl-srpm-macros-1-41.el9.noarch.rpm 112 kB/s | 9.4 kB     00:00    
(137/211): rust-srpm-macros-17-4.el9.noarch.rpm 127 kB/s |  11 kB     00:00    
(138/211): perl-parent-0.238-460.el9.noarch.rpm 114 kB/s |  16 kB     00:00    
(139/211): ghc-srpm-macros-1.5.0-6.el9.noarch.r  93 kB/s | 9.0 kB     00:00    
(140/211): lua-srpm-macros-1-6.el9.noarch.rpm   117 kB/s |  10 kB     00:00    
(141/211): patch-2.7.6-16.el9.ppc64le.rpm       1.6 MB/s | 140 kB     00:00    
(142/211): perl-Digest-MD5-2.58-4.el9.ppc64le.r 470 kB/s |  40 kB     00:00    
(143/211): perl-IO-Socket-IP-0.41-5.el9.noarch. 510 kB/s |  45 kB     00:00    
(144/211): perl-Pod-Escapes-1.07-460.el9.noarch 259 kB/s |  22 kB     00:00    
(145/211): perl-Pod-Simple-3.42-4.el9.noarch.rp 2.4 MB/s | 229 kB     00:00    
(146/211): perl-Text-ParseWords-3.30-460.el9.no 218 kB/s |  18 kB     00:00    
(147/211): perl-Term-ANSIColor-5.01-461.el9.noa 570 kB/s |  51 kB     00:00    
(148/211): perl-Text-Tabs+Wrap-2013.0523-460.el 271 kB/s |  25 kB     00:00    
(149/211): perl-URI-5.09-3.el9.noarch.rpm       1.4 MB/s | 125 kB     00:00    
(150/211): perl-constant-1.33-461.el9.noarch.rp 267 kB/s |  25 kB     00:00    
(151/211): openblas-srpm-macros-2-11.el9.noarch 102 kB/s | 8.6 kB     00:00    
(152/211): perl-Data-Dumper-2.174-462.el9.ppc64 670 kB/s |  59 kB     00:00    
(153/211): perl-File-Path-2.18-4.el9.noarch.rpm 432 kB/s |  38 kB     00:00    
(154/211): perl-Pod-Perldoc-3.28.01-461.el9.noa 1.0 MB/s |  92 kB     00:00    
(155/211): perl-Pod-Usage-2.01-4.el9.noarch.rpm 509 kB/s |  43 kB     00:00    
(156/211): perl-libnet-3.13-4.el9.noarch.rpm    1.5 MB/s | 134 kB     00:00    
(157/211): perl-podlators-4.14-460.el9.noarch.r 1.3 MB/s | 118 kB     00:00    
(158/211): fonts-srpm-macros-2.0.5-7.el9.1.noar 343 kB/s |  29 kB     00:00    
(159/211): ocaml-srpm-macros-6-6.el9.noarch.rpm 104 kB/s | 9.1 kB     00:00    
(160/211): perl-Carp-1.50-460.el9.noarch.rpm    369 kB/s |  31 kB     00:00    
(161/211): perl-Digest-1.19-4.el9.noarch.rpm    332 kB/s |  29 kB     00:00    
(162/211): perl-Getopt-Long-2.52-4.el9.noarch.r 693 kB/s |  64 kB     00:00    
(163/211): perl-Storable-3.21-460.el9.ppc64le.r 1.1 MB/s | 101 kB     00:00    
(164/211): perl-PathTools-3.78-461.el9.ppc64le. 1.0 MB/s |  93 kB     00:00    
(165/211): qt5-srpm-macros-5.15.9-1.el9.noarch. 104 kB/s | 9.1 kB     00:00    
(166/211): perl-HTTP-Tiny-0.076-462.el9.noarch. 674 kB/s |  57 kB     00:00    
(167/211): perl-Scalar-List-Utils-1.56-462.el9. 854 kB/s |  78 kB     00:00    
(168/211): perl-IO-Socket-SSL-2.073-2.el9.noarc 2.3 MB/s | 221 kB     00:00    
(169/211): python-srpm-macros-3.9-54.el9.noarch 214 kB/s |  18 kB     00:00    
(170/211): pyproject-srpm-macros-1.16.2-1.el9.n 167 kB/s |  14 kB     00:00    
(171/211): perl-AutoLoader-5.74-481.1.el9_6.noa 240 kB/s |  21 kB     00:00    
(172/211): perl-B-1.80-481.1.el9_6.ppc64le.rpm  2.1 MB/s | 183 kB     00:00    
(173/211): perl-Class-Struct-0.66-481.1.el9_6.n 261 kB/s |  22 kB     00:00    
(174/211): perl-Errno-1.30-481.1.el9_6.ppc64le. 166 kB/s |  14 kB     00:00    
(175/211): perl-Fcntl-1.13-481.1.el9_6.ppc64le. 234 kB/s |  20 kB     00:00    
(176/211): perl-File-Basename-2.85-481.1.el9_6. 193 kB/s |  17 kB     00:00    
(177/211): perl-File-stat-1.09-481.1.el9_6.noar 191 kB/s |  17 kB     00:00    
(178/211): perl-FileHandle-2.03-481.1.el9_6.noa 175 kB/s |  15 kB     00:00    
(179/211): perl-Getopt-Std-1.12-481.1.el9_6.noa 174 kB/s |  15 kB     00:00    
(180/211): perl-IO-1.43-481.1.el9_6.ppc64le.rpm 969 kB/s |  89 kB     00:00    
(181/211): perl-IPC-Open3-1.21-481.1.el9_6.noar 263 kB/s |  22 kB     00:00    
(182/211): perl-POSIX-1.94-481.1.el9_6.ppc64le. 1.0 MB/s |  98 kB     00:00    
(183/211): perl-SelectSaver-1.02-481.1.el9_6.no 127 kB/s |  11 kB     00:00    
(184/211): perl-Symbol-1.08-481.1.el9_6.noarch. 157 kB/s |  14 kB     00:00    
(185/211): perl-base-2.27-481.1.el9_6.noarch.rp 166 kB/s |  16 kB     00:00    
(186/211): perl-if-0.60.800-481.1.el9_6.noarch. 153 kB/s |  14 kB     00:00    
(187/211): perl-interpreter-5.32.1-481.1.el9_6. 745 kB/s |  70 kB     00:00    
(188/211): perl-mro-1.23-481.1.el9_6.ppc64le.rp 300 kB/s |  28 kB     00:00    
(189/211): perl-libs-5.32.1-481.1.el9_6.ppc64le  16 MB/s | 2.3 MB     00:00    
(190/211): perl-overload-1.31-481.1.el9_6.noarc 469 kB/s |  45 kB     00:00    
(191/211): perl-overloading-0.02-481.1.el9_6.no 141 kB/s |  12 kB     00:00    
(192/211): perl-subs-1.03-481.1.el9_6.noarch.rp 130 kB/s |  11 kB     00:00    
(193/211): perl-vars-1.05-481.1.el9_6.noarch.rp 145 kB/s |  13 kB     00:00    
(194/211): redhat-rpm-config-210-1.el9.noarch.r 811 kB/s |  70 kB     00:00    
(195/211): efi-srpm-macros-6-4.el9.noarch.rpm   137 kB/s |  21 kB     00:00    
(196/211): gdb-minimal-16.3-2.el9.ppc64le.rpm    30 MB/s | 4.6 MB     00:00    
(197/211): rpm-build-4.16.1.3-39.el9.ppc64le.rp 765 kB/s |  67 kB     00:00    
(198/211): debugedit-5.0-11.el9.ppc64le.rpm     909 kB/s |  81 kB     00:00    
(199/211): dwz-0.16-1.el9.ppc64le.rpm           1.5 MB/s | 140 kB     00:00    
(200/211): kernel-srpm-macros-1.0-14.el9.noarch 158 kB/s |  14 kB     00:00    
(201/211): perl-Net-SSLeay-1.94-3.el9.ppc64le.r 4.5 MB/s | 423 kB     00:00    
(202/211): go-srpm-macros-3.6.0-12.el9_7.noarch 306 kB/s |  27 kB     00:00    
[MIRROR] ansible-srpm-macros-1-16.el9.noarch.rpm: Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/epel/9/Everything/ppc64le/Packages/a/ansible-srpm-macros-1-16.el9.noarch.rpm [Failed to connect to dl.fedoraproject.org port 443: Connection timed out]
[MIRROR] epel-rpm-macros-9-17.el9.noarch.rpm: Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/epel/9/Everything/ppc64le/Packages/e/epel-rpm-macros-9-17.el9.noarch.rpm [Failed to connect to dl.fedoraproject.org port 443: Connection timed out]
[MIRROR] forge-srpm-macros-0.4.0-1.el9.noarch.rpm: Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/epel/9/Everything/ppc64le/Packages/f/forge-srpm-macros-0.4.0-1.el9.noarch.rpm [Failed to connect to dl.fedoraproject.org port 443: Connection timed out]
(203/211): ansible-srpm-macros-1-16.el9.noarch. 717  B/s |  21 kB     00:29    
(204/211): epel-rpm-macros-9-17.el9.noarch.rpm  521  B/s |  15 kB     00:29    
(205/211): forge-srpm-macros-0.4.0-1.el9.noarch 676  B/s |  19 kB     00:29    
(206/211): fpc-srpm-macros-1.3-7.el9.noarch.rpm  98 kB/s | 7.5 kB     00:00    
(207/211): ghc-srpm-macros-epel-1.9.1-1.el9.noa  97 kB/s | 7.5 kB     00:00    
(208/211): go-srpm-macros-epel-3.8.0-1.el9.noar 347 kB/s |  26 kB     00:00    
(209/211): qt6-srpm-macros-6.6.2-1.el9.noarch.r 112 kB/s | 8.7 kB     00:00    
(210/211): rpmautospec-rpm-macros-0.8.1-11.el9. 143 kB/s |  11 kB     00:00    
(211/211): rust-srpm-macros-epel-26.3-1.el9.noa 133 kB/s |  10 kB     00:00    
--------------------------------------------------------------------------------
Total                                           2.0 MB/s |  73 MB     00:36     
Red Hat Enterprise Linux - BaseOS               3.5 MB/s | 3.6 kB     00:00    
Key imported successfullyImporting GPG key 0xFD431D51:
 Userid     : "Red Hat, Inc. (release key 2) <security@redhat.com>"
 Fingerprint: 567E 347A D004 4ADE 55BA 8A5F 199E 2F91 FD43 1D51
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release

Importing GPG key 0x5A6340B3:
 Userid     : "Red Hat, Inc. (auxiliary key 3) <security@redhat.com>"
 Fingerprint: 7E46 2425 8C40 6535 D56D 6F13 5054 E4A4 5A63 40B3
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release
Key imported successfully
Extra Packages for Enterprise Linux 9 - ppc64le 1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x3228467C:
 Userid     : "Fedora (epel9) <epel@fedoraproject.org>"
 Fingerprint: FF8A D134 4597 106E CE81 3B91 8A38 72BF 3228 467C
 From       : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-9
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.16-5.el9.ppc64le                          1/1 
  Preparing        :                                                        1/1 
  Installing       : rust-srpm-macros-17-4.el9.noarch                     1/211 
  Installing       : redhat-release-9.7-0.7.el9.ppc64le                   2/211 
  Installing       : setup-2.13.7-10.el9.noarch                           3/211 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.13.7-10.el9.noarch                           3/211 
  Installing       : filesystem-3.16-5.el9.ppc64le                        4/211 
  Installing       : basesystem-11-13.el9.noarch                          5/211 
  Installing       : rust-srpm-macros-epel-26.3-1.el9.noarch              6/211 
  Installing       : qt6-srpm-macros-6.6.2-1.el9.noarch                   7/211 
  Installing       : ghc-srpm-macros-epel-1.9.1-1.el9.noarch              8/211 
  Installing       : fpc-srpm-macros-1.3-7.el9.noarch                     9/211 
  Installing       : ansible-srpm-macros-1-16.el9.noarch                 10/211 
  Installing       : qt5-srpm-macros-5.15.9-1.el9.noarch                 11/211 
  Installing       : ocaml-srpm-macros-6-6.el9.noarch                    12/211 
  Installing       : openblas-srpm-macros-2-11.el9.noarch                13/211 
  Installing       : ghc-srpm-macros-1.5.0-6.el9.noarch                  14/211 
  Installing       : perl-srpm-macros-1-41.el9.noarch                    15/211 
  Installing       : libssh-config-0.10.4-17.el9_7.noarch                16/211 
  Installing       : tzdata-2025c-1.el9.noarch                           17/211 
  Installing       : ncurses-base-6.2-12.20210508.el9.noarch             18/211 
  Installing       : ncurses-libs-6.2-12.20210508.el9.ppc64le            19/211 
  Installing       : bash-5.1.8-9.el9.ppc64le                            20/211 
  Running scriptlet: bash-5.1.8-9.el9.ppc64le                            20/211 
  Installing       : libgcc-11.5.0-11.el9.ppc64le                        21/211 
  Running scriptlet: libgcc-11.5.0-11.el9.ppc64le                        21/211 
  Installing       : glibc-common-2.34-231.el9_7.2.ppc64le               22/211 
  Installing       : glibc-gconv-extra-2.34-231.el9_7.2.ppc64le          23/211 
  Running scriptlet: glibc-gconv-extra-2.34-231.el9_7.2.ppc64le          23/211 
  Installing       : glibc-minimal-langpack-2.34-231.el9_7.2.ppc64le     24/211 
  Running scriptlet: glibc-2.34-231.el9_7.2.ppc64le                      25/211 
  Installing       : glibc-2.34-231.el9_7.2.ppc64le                      25/211 
  Running scriptlet: glibc-2.34-231.el9_7.2.ppc64le                      25/211 
  Installing       : zlib-1.2.11-40.el9.ppc64le                          26/211 
  Installing       : xz-libs-5.2.5-8.el9_0.ppc64le                       27/211 
  Installing       : bzip2-libs-1.0.8-10.el9_5.ppc64le                   28/211 
  Installing       : libzstd-1.5.5-1.el9.ppc64le                         29/211 
  Installing       : elfutils-libelf-0.193-1.el9.ppc64le                 30/211 
  Installing       : libxcrypt-4.4.18-3.el9.ppc64le                      31/211 
  Installing       : libuuid-2.37.4-21.el9.ppc64le                       32/211 
  Installing       : libstdc++-11.5.0-11.el9.ppc64le                     33/211 
  Installing       : libattr-2.5.1-3.el9.ppc64le                         34/211 
  Installing       : libacl-2.3.1-4.el9.ppc64le                          35/211 
  Installing       : popt-1.18-8.el9.ppc64le                             36/211 
  Installing       : gmp-1:6.2.0-13.el9.ppc64le                          37/211 
  Installing       : libcap-2.48-10.el9.ppc64le                          38/211 
  Installing       : lz4-libs-1.9.3-5.el9.ppc64le                        39/211 
  Installing       : readline-8.1-4.el9.ppc64le                          40/211 
  Installing       : libcom_err-1.46.5-8.el9.ppc64le                     41/211 
  Installing       : crypto-policies-20250905-1.git377cc42.el9_7.noar    42/211 
  Running scriptlet: crypto-policies-20250905-1.git377cc42.el9_7.noar    42/211 
  Installing       : mpfr-4.1.0-7.el9.ppc64le                            43/211 
  Installing       : dwz-0.16-1.el9.ppc64le                              44/211 
  Installing       : unzip-6.0-59.el9.ppc64le                            45/211 
  Installing       : file-libs-5.39-16.el9.ppc64le                       46/211 
  Installing       : file-5.39-16.el9.ppc64le                            47/211 
  Installing       : sqlite-libs-3.34.1-9.el9_7.ppc64le                  48/211 
  Installing       : libcap-ng-0.8.2-7.el9.ppc64le                       49/211 
  Installing       : audit-libs-3.1.5-7.el9.ppc64le                      50/211 
  Installing       : libsigsegv-2.13-4.el9.ppc64le                       51/211 
  Installing       : gawk-5.1.0-6.el9.ppc64le                            52/211 
  Installing       : libunistring-0.9.10-15.el9.ppc64le                  53/211 
  Installing       : libidn2-2.3.0-7.el9.ppc64le                         54/211 
  Installing       : libffi-3.4.2-8.el9.ppc64le                          55/211 
  Installing       : lua-libs-5.4.4-4.el9.ppc64le                        56/211 
  Installing       : alternatives-1.24-2.el9.ppc64le                     57/211 
  Installing       : libsmartcols-2.37.4-21.el9.ppc64le                  58/211 
  Installing       : libtasn1-4.16.0-9.el9.ppc64le                       59/211 
  Installing       : p11-kit-0.25.3-3.el9_5.ppc64le                      60/211 
  Installing       : libsepol-3.6-3.el9.ppc64le                          61/211 
  Installing       : p11-kit-trust-0.25.3-3.el9_5.ppc64le                62/211 
  Running scriptlet: p11-kit-trust-0.25.3-3.el9_5.ppc64le                62/211 
  Installing       : zip-3.0-35.el9.ppc64le                              63/211 
  Installing       : zstd-1.5.5-1.el9.ppc64le                            64/211 
  Running scriptlet: groff-base-1.22.4-10.el9.ppc64le                    65/211 
  Installing       : groff-base-1.22.4-10.el9.ppc64le                    65/211 
  Running scriptlet: groff-base-1.22.4-10.el9.ppc64le                    65/211 
  Installing       : bzip2-1.0.8-10.el9_5.ppc64le                        66/211 
  Installing       : libxml2-2.9.13-14.el9_7.ppc64le                     67/211 
  Installing       : info-6.7-15.el9.ppc64le                             68/211 
  Installing       : ed-1.14.2-12.el9.ppc64le                            69/211 
  Installing       : cpio-2.13-16.el9.ppc64le                            70/211 
  Installing       : diffutils-3.7-12.el9.ppc64le                        71/211 
  Installing       : json-c-0.14-11.el9.ppc64le                          72/211 
  Installing       : libgpg-error-1.42-5.el9.ppc64le                     73/211 
  Installing       : libgcrypt-1.10.0-11.el9.ppc64le                     74/211 
  Installing       : libverto-0.3.2-3.el9.ppc64le                        75/211 
  Installing       : keyutils-libs-1.6.3-1.el9.ppc64le                   76/211 
  Installing       : libpkgconf-1.7.3-10.el9.ppc64le                     77/211 
  Installing       : pkgconf-1.7.3-10.el9.ppc64le                        78/211 
  Installing       : gdbm-libs-1:1.23-1.el9.ppc64le                      79/211 
  Installing       : libbrotli-1.0.9-7.el9_5.ppc64le                     80/211 
  Installing       : libeconf-0.4.1-4.el9.ppc64le                        81/211 
  Installing       : libnghttp2-1.43.0-6.el9.ppc64le                     82/211 
  Installing       : librtas-2.0.6-1.el9.ppc64le                         83/211 
  Running scriptlet: librtas-2.0.6-1.el9.ppc64le                         83/211 
  Installing       : pcre-8.44-4.el9.ppc64le                             84/211 
  Installing       : grep-3.6-5.el9.ppc64le                              85/211 
  Installing       : xz-5.2.5-8.el9_0.ppc64le                            86/211 
  Installing       : libtool-ltdl-2.4.6-46.el9.ppc64le                   87/211 
  Installing       : libdb-5.3.28-57.el9_6.ppc64le                       88/211 
  Installing       : libgomp-11.5.0-11.el9.ppc64le                       89/211 
  Installing       : ncurses-6.2-12.20210508.el9.ppc64le                 90/211 
  Installing       : elfutils-default-yama-scope-0.193-1.el9.noarch      91/211 
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  Installing       : elfutils-libs-0.193-1.el9.ppc64le                   92/211 
  Installing       : coreutils-common-8.32-39.el9.ppc64le                93/211 
  Installing       : pcre2-syntax-10.40-6.el9.noarch                     94/211 
  Installing       : pcre2-10.40-6.el9.ppc64le                           95/211 
  Installing       : libselinux-3.6-3.el9.ppc64le                        96/211 
  Installing       : sed-4.8-9.el9.ppc64le                               97/211 
  Installing       : findutils-1:4.8.0-7.el9.ppc64le                     98/211 
  Installing       : openssl-fips-provider-so-3.0.7-8.el9.ppc64le        99/211 
  Installing       : openssl-fips-provider-3.0.7-8.el9.ppc64le          100/211 
  Installing       : openssl-libs-1:3.5.1-5.el9_7.ppc64le               101/211 
  Installing       : coreutils-8.32-39.el9.ppc64le                      102/211 
  Running scriptlet: ca-certificates-2025.2.80_v9.0.305-91.el9.noarch   103/211 
  Installing       : ca-certificates-2025.2.80_v9.0.305-91.el9.noarch   103/211 
  Running scriptlet: ca-certificates-2025.2.80_v9.0.305-91.el9.noarch   103/211 
  Installing       : libblkid-2.37.4-21.el9.ppc64le                     104/211 
  Running scriptlet: libblkid-2.37.4-21.el9.ppc64le                     104/211 
  Installing       : krb5-libs-1.21.1-8.el9_6.ppc64le                   105/211 
  Installing       : libmount-2.37.4-21.el9.ppc64le                     106/211 
  Installing       : gzip-1.12-1.el9.ppc64le                            107/211 
  Installing       : cracklib-2.9.6-27.el9.ppc64le                      108/211 
  Installing       : systemd-libs-252-55.el9_7.7.ppc64le                109/211 
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  Installing       : libarchive-3.5.3-6.el9_6.ppc64le                   110/211 
  Installing       : util-linux-core-2.37.4-21.el9.ppc64le              111/211 
  Running scriptlet: util-linux-core-2.37.4-21.el9.ppc64le              111/211 
  Installing       : cracklib-dicts-2.9.6-27.el9.ppc64le                112/211 
  Installing       : cyrus-sasl-lib-2.1.27-22.el9.ppc64le               113/211 
  Installing       : libssh-0.10.4-17.el9_7.ppc64le                     114/211 
  Installing       : libfdisk-2.37.4-21.el9.ppc64le                     115/211 
  Installing       : perl-Digest-1.19-4.el9.noarch                      116/211 
  Installing       : perl-Digest-MD5-2.58-4.el9.ppc64le                 117/211 
  Installing       : perl-B-1.80-481.1.el9_6.ppc64le                    118/211 
  Installing       : perl-FileHandle-2.03-481.1.el9_6.noarch            119/211 
  Installing       : perl-Data-Dumper-2.174-462.el9.ppc64le             120/211 
  Installing       : perl-libnet-3.13-4.el9.noarch                      121/211 
  Installing       : perl-AutoLoader-5.74-481.1.el9_6.noarch            122/211 
  Installing       : perl-base-2.27-481.1.el9_6.noarch                  123/211 
  Installing       : perl-URI-5.09-3.el9.noarch                         124/211 
  Installing       : perl-Time-Local-2:1.300-7.el9.noarch               125/211 
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  Installing       : perl-if-0.60.800-481.1.el9_6.noarch                127/211 
  Installing       : perl-IO-Socket-IP-0.41-5.el9.noarch                128/211 
  Installing       : perl-Pod-Escapes-1:1.07-460.el9.noarch             129/211 
  Installing       : perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch       130/211 
  Installing       : perl-File-Path-2.18-4.el9.noarch                   131/211 
  Installing       : perl-IO-Socket-SSL-2.073-2.el9.noarch              132/211 
  Installing       : perl-Net-SSLeay-1.94-3.el9.ppc64le                 133/211 
  Installing       : perl-Term-ANSIColor-5.01-461.el9.noarch            134/211 
  Installing       : perl-Class-Struct-0.66-481.1.el9_6.noarch          135/211 
  Installing       : perl-POSIX-1.94-481.1.el9_6.ppc64le                136/211 
  Installing       : perl-IPC-Open3-1.21-481.1.el9_6.noarch             137/211 
  Installing       : perl-subs-1.03-481.1.el9_6.noarch                  138/211 
  Installing       : perl-Term-Cap-1.17-460.el9.noarch                  139/211 
  Installing       : perl-File-Temp-1:0.231.100-4.el9.noarch            140/211 
  Installing       : perl-Pod-Simple-1:3.42-4.el9.noarch                141/211 
  Installing       : perl-HTTP-Tiny-0.076-462.el9.noarch                142/211 
  Installing       : perl-Socket-4:2.031-4.el9.ppc64le                  143/211 
  Installing       : perl-SelectSaver-1.02-481.1.el9_6.noarch           144/211 
  Installing       : perl-Symbol-1.08-481.1.el9_6.noarch                145/211 
  Installing       : perl-File-stat-1.09-481.1.el9_6.noarch             146/211 
  Installing       : perl-podlators-1:4.14-460.el9.noarch               147/211 
  Installing       : perl-Pod-Perldoc-3.28.01-461.el9.noarch            148/211 
  Installing       : perl-Text-ParseWords-3.30-460.el9.noarch           149/211 
  Installing       : perl-Fcntl-1.13-481.1.el9_6.ppc64le                150/211 
  Installing       : perl-mro-1.23-481.1.el9_6.ppc64le                  151/211 
  Installing       : perl-IO-1.43-481.1.el9_6.ppc64le                   152/211 
  Installing       : perl-overloading-0.02-481.1.el9_6.noarch           153/211 
  Installing       : perl-Pod-Usage-4:2.01-4.el9.noarch                 154/211 
  Installing       : perl-parent-1:0.238-460.el9.noarch                 155/211 
  Installing       : perl-MIME-Base64-3.16-4.el9.ppc64le                156/211 
  Installing       : perl-constant-1.33-461.el9.noarch                  157/211 
  Installing       : perl-Scalar-List-Utils-4:1.56-462.el9.ppc64le      158/211 
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  Verifying        : epel-rpm-macros-9-17.el9.noarch                    204/211 
  Verifying        : forge-srpm-macros-0.4.0-1.el9.noarch               205/211 
  Verifying        : fpc-srpm-macros-1.3-7.el9.noarch                   206/211 
  Verifying        : ghc-srpm-macros-epel-1.9.1-1.el9.noarch            207/211 
  Verifying        : go-srpm-macros-epel-3.8.0-1.el9.noarch             208/211 
  Verifying        : qt6-srpm-macros-6.6.2-1.el9.noarch                 209/211 
  Verifying        : rpmautospec-rpm-macros-0.8.1-11.el9.noarch         210/211 
  Verifying        : rust-srpm-macros-epel-26.3-1.el9.noarch            211/211 
Installed products updated.

Installed:
  alternatives-1.24-2.el9.ppc64le                                               
  ansible-srpm-macros-1-16.el9.noarch                                           
  audit-libs-3.1.5-7.el9.ppc64le                                                
  basesystem-11-13.el9.noarch                                                   
  bash-5.1.8-9.el9.ppc64le                                                      
  binutils-2.35.2-67.el9_7.1.ppc64le                                            
  binutils-gold-2.35.2-67.el9_7.1.ppc64le                                       
  bzip2-1.0.8-10.el9_5.ppc64le                                                  
  bzip2-libs-1.0.8-10.el9_5.ppc64le                                             
  ca-certificates-2025.2.80_v9.0.305-91.el9.noarch                              
  coreutils-8.32-39.el9.ppc64le                                                 
  coreutils-common-8.32-39.el9.ppc64le                                          
  cpio-2.13-16.el9.ppc64le                                                      
  cracklib-2.9.6-27.el9.ppc64le                                                 
  cracklib-dicts-2.9.6-27.el9.ppc64le                                           
  crypto-policies-20250905-1.git377cc42.el9_7.noarch                            
  curl-7.76.1-34.el9.ppc64le                                                    
  cyrus-sasl-lib-2.1.27-22.el9.ppc64le                                          
  debugedit-5.0-11.el9.ppc64le                                                  
  diffutils-3.7-12.el9.ppc64le                                                  
  dwz-0.16-1.el9.ppc64le                                                        
  ed-1.14.2-12.el9.ppc64le                                                      
  efi-srpm-macros-6-4.el9.noarch                                                
  elfutils-0.193-1.el9.ppc64le                                                  
  elfutils-debuginfod-client-0.193-1.el9.ppc64le                                
  elfutils-default-yama-scope-0.193-1.el9.noarch                                
  elfutils-libelf-0.193-1.el9.ppc64le                                           
  elfutils-libs-0.193-1.el9.ppc64le                                             
  epel-rpm-macros-9-17.el9.noarch                                               
  file-5.39-16.el9.ppc64le                                                      
  file-libs-5.39-16.el9.ppc64le                                                 
  filesystem-3.16-5.el9.ppc64le                                                 
  findutils-1:4.8.0-7.el9.ppc64le                                               
  fonts-srpm-macros-1:2.0.5-7.el9.1.noarch                                      
  forge-srpm-macros-0.4.0-1.el9.noarch                                          
  fpc-srpm-macros-1.3-7.el9.noarch                                              
  gawk-5.1.0-6.el9.ppc64le                                                      
  gdb-minimal-16.3-2.el9.ppc64le                                                
  gdbm-libs-1:1.23-1.el9.ppc64le                                                
  ghc-srpm-macros-1.5.0-6.el9.noarch                                            
  ghc-srpm-macros-epel-1.9.1-1.el9.noarch                                       
  glibc-2.34-231.el9_7.2.ppc64le                                                
  glibc-common-2.34-231.el9_7.2.ppc64le                                         
  glibc-gconv-extra-2.34-231.el9_7.2.ppc64le                                    
  glibc-minimal-langpack-2.34-231.el9_7.2.ppc64le                               
  gmp-1:6.2.0-13.el9.ppc64le                                                    
  go-srpm-macros-3.6.0-12.el9_7.noarch                                          
  go-srpm-macros-epel-3.8.0-1.el9.noarch                                        
  grep-3.6-5.el9.ppc64le                                                        
  groff-base-1.22.4-10.el9.ppc64le                                              
  gzip-1.12-1.el9.ppc64le                                                       
  info-6.7-15.el9.ppc64le                                                       
  json-c-0.14-11.el9.ppc64le                                                    
  kernel-srpm-macros-1.0-14.el9.noarch                                          
  keyutils-libs-1.6.3-1.el9.ppc64le                                             
  krb5-libs-1.21.1-8.el9_6.ppc64le                                              
  libacl-2.3.1-4.el9.ppc64le                                                    
  libarchive-3.5.3-6.el9_6.ppc64le                                              
  libattr-2.5.1-3.el9.ppc64le                                                   
  libblkid-2.37.4-21.el9.ppc64le                                                
  libbrotli-1.0.9-7.el9_5.ppc64le                                               
  libcap-2.48-10.el9.ppc64le                                                    
  libcap-ng-0.8.2-7.el9.ppc64le                                                 
  libcom_err-1.46.5-8.el9.ppc64le                                               
  libcurl-7.76.1-34.el9.ppc64le                                                 
  libdb-5.3.28-57.el9_6.ppc64le                                                 
  libeconf-0.4.1-4.el9.ppc64le                                                  
  libevent-2.1.12-8.el9_4.ppc64le                                               
  libfdisk-2.37.4-21.el9.ppc64le                                                
  libffi-3.4.2-8.el9.ppc64le                                                    
  libgcc-11.5.0-11.el9.ppc64le                                                  
  libgcrypt-1.10.0-11.el9.ppc64le                                               
  libgomp-11.5.0-11.el9.ppc64le                                                 
  libgpg-error-1.42-5.el9.ppc64le                                               
  libidn2-2.3.0-7.el9.ppc64le                                                   
  libmount-2.37.4-21.el9.ppc64le                                                
  libnghttp2-1.43.0-6.el9.ppc64le                                               
  libpkgconf-1.7.3-10.el9.ppc64le                                               
  libpsl-0.21.1-5.el9.ppc64le                                                   
  libpwquality-1.4.4-8.el9.ppc64le                                              
  librtas-2.0.6-1.el9.ppc64le                                                   
  libselinux-3.6-3.el9.ppc64le                                                  
  libsemanage-3.6-5.el9_6.ppc64le                                               
  libsepol-3.6-3.el9.ppc64le                                                    
  libsigsegv-2.13-4.el9.ppc64le                                                 
  libsmartcols-2.37.4-21.el9.ppc64le                                            
  libssh-0.10.4-17.el9_7.ppc64le                                                
  libssh-config-0.10.4-17.el9_7.noarch                                          
  libstdc++-11.5.0-11.el9.ppc64le                                               
  libtasn1-4.16.0-9.el9.ppc64le                                                 
  libtool-ltdl-2.4.6-46.el9.ppc64le                                             
  libunistring-0.9.10-15.el9.ppc64le                                            
  libutempter-1.2.1-6.el9.ppc64le                                               
  libuuid-2.37.4-21.el9.ppc64le                                                 
  libverto-0.3.2-3.el9.ppc64le                                                  
  libxcrypt-4.4.18-3.el9.ppc64le                                                
  libxml2-2.9.13-14.el9_7.ppc64le                                               
  libzstd-1.5.5-1.el9.ppc64le                                                   
  lua-libs-5.4.4-4.el9.ppc64le                                                  
  lua-srpm-macros-1-6.el9.noarch                                                
  lz4-libs-1.9.3-5.el9.ppc64le                                                  
  mpfr-4.1.0-7.el9.ppc64le                                                      
  ncurses-6.2-12.20210508.el9.ppc64le                                           
  ncurses-base-6.2-12.20210508.el9.noarch                                       
  ncurses-libs-6.2-12.20210508.el9.ppc64le                                      
  ocaml-srpm-macros-6-6.el9.noarch                                              
  openblas-srpm-macros-2-11.el9.noarch                                          
  openldap-2.6.8-4.el9.ppc64le                                                  
  openssl-1:3.5.1-5.el9_7.ppc64le                                               
  openssl-fips-provider-3.0.7-8.el9.ppc64le                                     
  openssl-fips-provider-so-3.0.7-8.el9.ppc64le                                  
  openssl-libs-1:3.5.1-5.el9_7.ppc64le                                          
  p11-kit-0.25.3-3.el9_5.ppc64le                                                
  p11-kit-trust-0.25.3-3.el9_5.ppc64le                                          
  pam-1.5.1-26.el9_6.ppc64le                                                    
  patch-2.7.6-16.el9.ppc64le                                                    
  pcre-8.44-4.el9.ppc64le                                                       
  pcre2-10.40-6.el9.ppc64le                                                     
  pcre2-syntax-10.40-6.el9.noarch                                               
  perl-AutoLoader-5.74-481.1.el9_6.noarch                                       
  perl-B-1.80-481.1.el9_6.ppc64le                                               
  perl-Carp-1.50-460.el9.noarch                                                 
  perl-Class-Struct-0.66-481.1.el9_6.noarch                                     
  perl-Data-Dumper-2.174-462.el9.ppc64le                                        
  perl-Digest-1.19-4.el9.noarch                                                 
  perl-Digest-MD5-2.58-4.el9.ppc64le                                            
  perl-Encode-4:3.08-462.el9.ppc64le                                            
  perl-Errno-1.30-481.1.el9_6.ppc64le                                           
  perl-Exporter-5.74-461.el9.noarch                                             
  perl-Fcntl-1.13-481.1.el9_6.ppc64le                                           
  perl-File-Basename-2.85-481.1.el9_6.noarch                                    
  perl-File-Path-2.18-4.el9.noarch                                              
  perl-File-Temp-1:0.231.100-4.el9.noarch                                       
  perl-File-stat-1.09-481.1.el9_6.noarch                                        
  perl-FileHandle-2.03-481.1.el9_6.noarch                                       
  perl-Getopt-Long-1:2.52-4.el9.noarch                                          
  perl-Getopt-Std-1.12-481.1.el9_6.noarch                                       
  perl-HTTP-Tiny-0.076-462.el9.noarch                                           
  perl-IO-1.43-481.1.el9_6.ppc64le                                              
  perl-IO-Socket-IP-0.41-5.el9.noarch                                           
  perl-IO-Socket-SSL-2.073-2.el9.noarch                                         
  perl-IPC-Open3-1.21-481.1.el9_6.noarch                                        
  perl-MIME-Base64-3.16-4.el9.ppc64le                                           
  perl-Mozilla-CA-20200520-6.el9.noarch                                         
  perl-Net-SSLeay-1.94-3.el9.ppc64le                                            
  perl-POSIX-1.94-481.1.el9_6.ppc64le                                           
  perl-PathTools-3.78-461.el9.ppc64le                                           
  perl-Pod-Escapes-1:1.07-460.el9.noarch                                        
  perl-Pod-Perldoc-3.28.01-461.el9.noarch                                       
  perl-Pod-Simple-1:3.42-4.el9.noarch                                           
  perl-Pod-Usage-4:2.01-4.el9.noarch                                            
  perl-Scalar-List-Utils-4:1.56-462.el9.ppc64le                                 
  perl-SelectSaver-1.02-481.1.el9_6.noarch                                      
  perl-Socket-4:2.031-4.el9.ppc64le                                             
  perl-Storable-1:3.21-460.el9.ppc64le                                          
  perl-Symbol-1.08-481.1.el9_6.noarch                                           
  perl-Term-ANSIColor-5.01-461.el9.noarch                                       
  perl-Term-Cap-1.17-460.el9.noarch                                             
  perl-Text-ParseWords-3.30-460.el9.noarch                                      
  perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch                                  
  perl-Time-Local-2:1.300-7.el9.noarch                                          
  perl-URI-5.09-3.el9.noarch                                                    
  perl-base-2.27-481.1.el9_6.noarch                                             
  perl-constant-1.33-461.el9.noarch                                             
  perl-if-0.60.800-481.1.el9_6.noarch                                           
  perl-interpreter-4:5.32.1-481.1.el9_6.ppc64le                                 
  perl-libnet-3.13-4.el9.noarch                                                 
  perl-libs-4:5.32.1-481.1.el9_6.ppc64le                                        
  perl-mro-1.23-481.1.el9_6.ppc64le                                             
  perl-overload-1.31-481.1.el9_6.noarch                                         
  perl-overloading-0.02-481.1.el9_6.noarch                                      
  perl-parent-1:0.238-460.el9.noarch                                            
  perl-podlators-1:4.14-460.el9.noarch                                          
  perl-srpm-macros-1-41.el9.noarch                                              
  perl-subs-1.03-481.1.el9_6.noarch                                             
  perl-vars-1.05-481.1.el9_6.noarch                                             
  pkgconf-1.7.3-10.el9.ppc64le                                                  
  pkgconf-m4-1.7.3-10.el9.noarch                                                
  pkgconf-pkg-config-1.7.3-10.el9.ppc64le                                       
  popt-1.18-8.el9.ppc64le                                                       
  publicsuffix-list-dafsa-20210518-3.el9.noarch                                 
  pyproject-srpm-macros-1.16.2-1.el9.noarch                                     
  python-srpm-macros-3.9-54.el9.noarch                                          
  qt5-srpm-macros-5.15.9-1.el9.noarch                                           
  qt6-srpm-macros-6.6.2-1.el9.noarch                                            
  readline-8.1-4.el9.ppc64le                                                    
  redhat-release-9.7-0.7.el9.ppc64le                                            
  redhat-rpm-config-210-1.el9.noarch                                            
  rpm-4.16.1.3-39.el9.ppc64le                                                   
  rpm-build-4.16.1.3-39.el9.ppc64le                                             
  rpm-build-libs-4.16.1.3-39.el9.ppc64le                                        
  rpm-libs-4.16.1.3-39.el9.ppc64le                                              
  rpmautospec-rpm-macros-0.8.1-11.el9.noarch                                    
  rust-srpm-macros-17-4.el9.noarch                                              
  rust-srpm-macros-epel-26.3-1.el9.noarch                                       
  sed-4.8-9.el9.ppc64le                                                         
  setup-2.13.7-10.el9.noarch                                                    
  shadow-utils-2:4.9-15.el9.ppc64le                                             
  sqlite-libs-3.34.1-9.el9_7.ppc64le                                            
  systemd-libs-252-55.el9_7.7.ppc64le                                           
  tar-2:1.34-9.el9_7.ppc64le                                                    
  tzdata-2025c-1.el9.noarch                                                     
  unzip-6.0-59.el9.ppc64le                                                      
  util-linux-2.37.4-21.el9.ppc64le                                              
  util-linux-core-2.37.4-21.el9.ppc64le                                         
  which-2.21-30.el9_6.ppc64le                                                   
  xz-5.2.5-8.el9_0.ppc64le                                                      
  xz-libs-5.2.5-8.el9_0.ppc64le                                                 
  zip-3.0-35.el9.ppc64le                                                        
  zlib-1.2.11-40.el9.ppc64le                                                    
  zstd-1.5.5-1.el9.ppc64le                                                      

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.24-2.el9.ppc64le
ansible-srpm-macros-1-16.el9.noarch
audit-libs-3.1.5-7.el9.ppc64le
basesystem-11-13.el9.noarch
bash-5.1.8-9.el9.ppc64le
binutils-2.35.2-67.el9_7.1.ppc64le
binutils-gold-2.35.2-67.el9_7.1.ppc64le
bzip2-1.0.8-10.el9_5.ppc64le
bzip2-libs-1.0.8-10.el9_5.ppc64le
ca-certificates-2025.2.80_v9.0.305-91.el9.noarch
coreutils-8.32-39.el9.ppc64le
coreutils-common-8.32-39.el9.ppc64le
cpio-2.13-16.el9.ppc64le
cracklib-2.9.6-27.el9.ppc64le
cracklib-dicts-2.9.6-27.el9.ppc64le
crypto-policies-20250905-1.git377cc42.el9_7.noarch
curl-7.76.1-34.el9.ppc64le
cyrus-sasl-lib-2.1.27-22.el9.ppc64le
debugedit-5.0-11.el9.ppc64le
diffutils-3.7-12.el9.ppc64le
dwz-0.16-1.el9.ppc64le
ed-1.14.2-12.el9.ppc64le
efi-srpm-macros-6-4.el9.noarch
elfutils-0.193-1.el9.ppc64le
elfutils-debuginfod-client-0.193-1.el9.ppc64le
elfutils-default-yama-scope-0.193-1.el9.noarch
elfutils-libelf-0.193-1.el9.ppc64le
elfutils-libs-0.193-1.el9.ppc64le
epel-rpm-macros-9-17.el9.noarch
file-5.39-16.el9.ppc64le
file-libs-5.39-16.el9.ppc64le
filesystem-3.16-5.el9.ppc64le
findutils-4.8.0-7.el9.ppc64le
fonts-srpm-macros-2.0.5-7.el9.1.noarch
forge-srpm-macros-0.4.0-1.el9.noarch
fpc-srpm-macros-1.3-7.el9.noarch
gawk-5.1.0-6.el9.ppc64le
gdb-minimal-16.3-2.el9.ppc64le
gdbm-libs-1.23-1.el9.ppc64le
ghc-srpm-macros-1.5.0-6.el9.noarch
ghc-srpm-macros-epel-1.9.1-1.el9.noarch
glibc-2.34-231.el9_7.2.ppc64le
glibc-common-2.34-231.el9_7.2.ppc64le
glibc-gconv-extra-2.34-231.el9_7.2.ppc64le
glibc-minimal-langpack-2.34-231.el9_7.2.ppc64le
gmp-6.2.0-13.el9.ppc64le
go-srpm-macros-3.6.0-12.el9_7.noarch
go-srpm-macros-epel-3.8.0-1.el9.noarch
gpg-pubkey-3228467c-613798eb
gpg-pubkey-5a6340b3-6229229e
gpg-pubkey-fd431d51-4ae0493b
grep-3.6-5.el9.ppc64le
groff-base-1.22.4-10.el9.ppc64le
gzip-1.12-1.el9.ppc64le
info-6.7-15.el9.ppc64le
json-c-0.14-11.el9.ppc64le
kernel-srpm-macros-1.0-14.el9.noarch
keyutils-libs-1.6.3-1.el9.ppc64le
krb5-libs-1.21.1-8.el9_6.ppc64le
libacl-2.3.1-4.el9.ppc64le
libarchive-3.5.3-6.el9_6.ppc64le
libattr-2.5.1-3.el9.ppc64le
libblkid-2.37.4-21.el9.ppc64le
libbrotli-1.0.9-7.el9_5.ppc64le
libcap-2.48-10.el9.ppc64le
libcap-ng-0.8.2-7.el9.ppc64le
libcom_err-1.46.5-8.el9.ppc64le
libcurl-7.76.1-34.el9.ppc64le
libdb-5.3.28-57.el9_6.ppc64le
libeconf-0.4.1-4.el9.ppc64le
libevent-2.1.12-8.el9_4.ppc64le
libfdisk-2.37.4-21.el9.ppc64le
libffi-3.4.2-8.el9.ppc64le
libgcc-11.5.0-11.el9.ppc64le
libgcrypt-1.10.0-11.el9.ppc64le
libgomp-11.5.0-11.el9.ppc64le
libgpg-error-1.42-5.el9.ppc64le
libidn2-2.3.0-7.el9.ppc64le
libmount-2.37.4-21.el9.ppc64le
libnghttp2-1.43.0-6.el9.ppc64le
libpkgconf-1.7.3-10.el9.ppc64le
libpsl-0.21.1-5.el9.ppc64le
libpwquality-1.4.4-8.el9.ppc64le
librtas-2.0.6-1.el9.ppc64le
libselinux-3.6-3.el9.ppc64le
libsemanage-3.6-5.el9_6.ppc64le
libsepol-3.6-3.el9.ppc64le
libsigsegv-2.13-4.el9.ppc64le
libsmartcols-2.37.4-21.el9.ppc64le
libssh-0.10.4-17.el9_7.ppc64le
libssh-config-0.10.4-17.el9_7.noarch
libstdc++-11.5.0-11.el9.ppc64le
libtasn1-4.16.0-9.el9.ppc64le
libtool-ltdl-2.4.6-46.el9.ppc64le
libunistring-0.9.10-15.el9.ppc64le
libutempter-1.2.1-6.el9.ppc64le
libuuid-2.37.4-21.el9.ppc64le
libverto-0.3.2-3.el9.ppc64le
libxcrypt-4.4.18-3.el9.ppc64le
libxml2-2.9.13-14.el9_7.ppc64le
libzstd-1.5.5-1.el9.ppc64le
lua-libs-5.4.4-4.el9.ppc64le
lua-srpm-macros-1-6.el9.noarch
lz4-libs-1.9.3-5.el9.ppc64le
mpfr-4.1.0-7.el9.ppc64le
ncurses-6.2-12.20210508.el9.ppc64le
ncurses-base-6.2-12.20210508.el9.noarch
ncurses-libs-6.2-12.20210508.el9.ppc64le
ocaml-srpm-macros-6-6.el9.noarch
openblas-srpm-macros-2-11.el9.noarch
openldap-2.6.8-4.el9.ppc64le
openssl-3.5.1-5.el9_7.ppc64le
openssl-fips-provider-3.0.7-8.el9.ppc64le
openssl-fips-provider-so-3.0.7-8.el9.ppc64le
openssl-libs-3.5.1-5.el9_7.ppc64le
p11-kit-0.25.3-3.el9_5.ppc64le
p11-kit-trust-0.25.3-3.el9_5.ppc64le
pam-1.5.1-26.el9_6.ppc64le
patch-2.7.6-16.el9.ppc64le
pcre-8.44-4.el9.ppc64le
pcre2-10.40-6.el9.ppc64le
pcre2-syntax-10.40-6.el9.noarch
perl-AutoLoader-5.74-481.1.el9_6.noarch
perl-B-1.80-481.1.el9_6.ppc64le
perl-Carp-1.50-460.el9.noarch
perl-Class-Struct-0.66-481.1.el9_6.noarch
perl-Data-Dumper-2.174-462.el9.ppc64le
perl-Digest-1.19-4.el9.noarch
perl-Digest-MD5-2.58-4.el9.ppc64le
perl-Encode-3.08-462.el9.ppc64le
perl-Errno-1.30-481.1.el9_6.ppc64le
perl-Exporter-5.74-461.el9.noarch
perl-Fcntl-1.13-481.1.el9_6.ppc64le
perl-File-Basename-2.85-481.1.el9_6.noarch
perl-File-Path-2.18-4.el9.noarch
perl-File-Temp-0.231.100-4.el9.noarch
perl-File-stat-1.09-481.1.el9_6.noarch
perl-FileHandle-2.03-481.1.el9_6.noarch
perl-Getopt-Long-2.52-4.el9.noarch
perl-Getopt-Std-1.12-481.1.el9_6.noarch
perl-HTTP-Tiny-0.076-462.el9.noarch
perl-IO-1.43-481.1.el9_6.ppc64le
perl-IO-Socket-IP-0.41-5.el9.noarch
perl-IO-Socket-SSL-2.073-2.el9.noarch
perl-IPC-Open3-1.21-481.1.el9_6.noarch
perl-MIME-Base64-3.16-4.el9.ppc64le
perl-Mozilla-CA-20200520-6.el9.noarch
perl-Net-SSLeay-1.94-3.el9.ppc64le
perl-POSIX-1.94-481.1.el9_6.ppc64le
perl-PathTools-3.78-461.el9.ppc64le
perl-Pod-Escapes-1.07-460.el9.noarch
perl-Pod-Perldoc-3.28.01-461.el9.noarch
perl-Pod-Simple-3.42-4.el9.noarch
perl-Pod-Usage-2.01-4.el9.noarch
perl-Scalar-List-Utils-1.56-462.el9.ppc64le
perl-SelectSaver-1.02-481.1.el9_6.noarch
perl-Socket-2.031-4.el9.ppc64le
perl-Storable-3.21-460.el9.ppc64le
perl-Symbol-1.08-481.1.el9_6.noarch
perl-Term-ANSIColor-5.01-461.el9.noarch
perl-Term-Cap-1.17-460.el9.noarch
perl-Text-ParseWords-3.30-460.el9.noarch
perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch
perl-Time-Local-1.300-7.el9.noarch
perl-URI-5.09-3.el9.noarch
perl-base-2.27-481.1.el9_6.noarch
perl-constant-1.33-461.el9.noarch
perl-if-0.60.800-481.1.el9_6.noarch
perl-interpreter-5.32.1-481.1.el9_6.ppc64le
perl-libnet-3.13-4.el9.noarch
perl-libs-5.32.1-481.1.el9_6.ppc64le
perl-mro-1.23-481.1.el9_6.ppc64le
perl-overload-1.31-481.1.el9_6.noarch
perl-overloading-0.02-481.1.el9_6.noarch
perl-parent-0.238-460.el9.noarch
perl-podlators-4.14-460.el9.noarch
perl-srpm-macros-1-41.el9.noarch
perl-subs-1.03-481.1.el9_6.noarch
perl-vars-1.05-481.1.el9_6.noarch
pkgconf-1.7.3-10.el9.ppc64le
pkgconf-m4-1.7.3-10.el9.noarch
pkgconf-pkg-config-1.7.3-10.el9.ppc64le
popt-1.18-8.el9.ppc64le
publicsuffix-list-dafsa-20210518-3.el9.noarch
pyproject-srpm-macros-1.16.2-1.el9.noarch
python-srpm-macros-3.9-54.el9.noarch
qt5-srpm-macros-5.15.9-1.el9.noarch
qt6-srpm-macros-6.6.2-1.el9.noarch
readline-8.1-4.el9.ppc64le
redhat-release-9.7-0.7.el9.ppc64le
redhat-rpm-config-210-1.el9.noarch
rpm-4.16.1.3-39.el9.ppc64le
rpm-build-4.16.1.3-39.el9.ppc64le
rpm-build-libs-4.16.1.3-39.el9.ppc64le
rpm-libs-4.16.1.3-39.el9.ppc64le
rpmautospec-rpm-macros-0.8.1-11.el9.noarch
rust-srpm-macros-17-4.el9.noarch
rust-srpm-macros-epel-26.3-1.el9.noarch
sed-4.8-9.el9.ppc64le
setup-2.13.7-10.el9.noarch
shadow-utils-4.9-15.el9.ppc64le
sqlite-libs-3.34.1-9.el9_7.ppc64le
systemd-libs-252-55.el9_7.7.ppc64le
tar-1.34-9.el9_7.ppc64le
tzdata-2025c-1.el9.noarch
unzip-6.0-59.el9.ppc64le
util-linux-2.37.4-21.el9.ppc64le
util-linux-core-2.37.4-21.el9.ppc64le
which-2.21-30.el9_6.ppc64le
xz-5.2.5-8.el9_0.ppc64le
xz-libs-5.2.5-8.el9_0.ppc64le
zip-3.0-35.el9.ppc64le
zlib-1.2.11-40.el9.ppc64le
zstd-1.5.5-1.el9.ppc64le
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769040000
Wrote: /builddir/build/SRPMS/samtools-1.23-1.el9.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/rhel+epel-9-ppc64le-1769501919.064289/root/var/log/dnf.rpm.log
/var/lib/mock/rhel+epel-9-ppc64le-1769501919.064289/root/var/log/dnf.librepo.log
/var/lib/mock/rhel+epel-9-ppc64le-1769501919.064289/root/var/log/dnf.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-vxctcizq/samtools/samtools.spec) Config(child) 3 minutes 31 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/samtools-1.23-1.el9.src.rpm)  Config(rhel+epel-9-ppc64le)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-ppc64le-bootstrap-1769501919.064289/root.
INFO: reusing tmpfs at /var/lib/mock/rhel+epel-9-ppc64le-bootstrap-1769501919.064289/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-ppc64le-1769501919.064289/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.16.1.3-39.el9.ppc64le
  python3-dnf-4.14.0-31.el9.noarch
  python3-dnf-plugins-core-4.3.0-24.el9_7.noarch
  yum-4.14.0-31.el9.noarch
Finish: chroot init
Start: build phase for samtools-1.23-1.el9.src.rpm
Start: build setup for samtools-1.23-1.el9.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769040000
Wrote: /builddir/build/SRPMS/samtools-1.23-1.el9.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                 6.1 kB/s | 1.5 kB     00:00    
Red Hat Enterprise Linux - BaseOS                18 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             62 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil  61 kB/s | 4.5 kB     00:00    
Extra Packages for Enterprise Linux 9 - ppc64le 723 kB/s |  26 kB     00:00    
Extra Packages for Enterprise Linux 9 - ppc64le 341 kB/s |  20 MB     00:59    
Package perl-Getopt-Long-1:2.52-4.el9.noarch is already installed.
Package perl-interpreter-4:5.32.1-481.1.el9_6.ppc64le is already installed.
Dependencies resolved.
================================================================================
 Package               Arch       Version                    Repository    Size
================================================================================
Installing:
 gcc                   ppc64le    11.5.0-11.el9              appstream     28 M
 htslib-devel          ppc64le    1.23-1.el9                 copr_base    107 k
 htslib-tools          ppc64le    1.23-1.el9                 copr_base    800 k
 make                  ppc64le    1:4.3-8.el9                baseos       554 k
 ncurses-devel         ppc64le    6.2-12.20210508.el9        appstream    728 k
 perl-FindBin          noarch     1.51-481.1.el9_6           appstream     14 k
 perl-lib              ppc64le    0.65-481.1.el9_6           appstream     14 k
 zlib-devel            ppc64le    1.2.11-40.el9              appstream     47 k
Installing dependencies:
 annobin               ppc64le    12.98-1.el9                appstream    1.1 M
 cpp                   ppc64le    11.5.0-11.el9              appstream    9.2 M
 gcc-plugin-annobin    ppc64le    11.5.0-11.el9              appstream     39 k
 glibc-devel           ppc64le    2.34-231.el9_7.2           appstream    569 k
 htslib                ppc64le    1.23-1.el9                 copr_base    622 k
 kernel-headers        ppc64le    5.14.0-611.26.1.el9_7      appstream    2.9 M
 libasan               ppc64le    11.5.0-11.el9              appstream    430 k
 libatomic             ppc64le    11.5.0-11.el9              baseos        24 k
 libedit               ppc64le    3.1-38.20210216cvs.el9     baseos       119 k
 libmpc                ppc64le    1.2.1-4.el9                appstream     70 k
 libubsan              ppc64le    11.5.0-11.el9              appstream    197 k
 libxcrypt-devel       ppc64le    4.4.18-3.el9               appstream     32 k
 llvm-filesystem       ppc64le    20.1.8-3.el9               appstream    9.1 k
 llvm-libs             ppc64le    20.1.8-3.el9               appstream     30 M
 ncurses-c++-libs      ppc64le    6.2-12.20210508.el9        appstream     38 k

Transaction Summary
================================================================================
Install  23 Packages

Total download size: 75 M
Installed size: 259 M
Downloading Packages:
(1/23): htslib-devel-1.23-1.el9.ppc64le.rpm     280 kB/s | 107 kB     00:00    
(2/23): htslib-1.23-1.el9.ppc64le.rpm           1.5 MB/s | 622 kB     00:00    
(3/23): libedit-3.1-38.20210216cvs.el9.ppc64le. 1.0 MB/s | 119 kB     00:00    
(4/23): libatomic-11.5.0-11.el9.ppc64le.rpm     1.0 MB/s |  24 kB     00:00    
(5/23): libmpc-1.2.1-4.el9.ppc64le.rpm          1.7 MB/s |  70 kB     00:00    
(6/23): make-4.3-8.el9.ppc64le.rpm              3.3 MB/s | 554 kB     00:00    
(7/23): libxcrypt-devel-4.4.18-3.el9.ppc64le.rp 453 kB/s |  32 kB     00:00    
(8/23): perl-FindBin-1.51-481.1.el9_6.noarch.rp 482 kB/s |  14 kB     00:00    
(9/23): perl-lib-0.65-481.1.el9_6.ppc64le.rpm   352 kB/s |  14 kB     00:00    
(10/23): htslib-tools-1.23-1.el9.ppc64le.rpm    1.0 MB/s | 800 kB     00:00    
(11/23): zlib-devel-1.2.11-40.el9.ppc64le.rpm   226 kB/s |  47 kB     00:00    
(12/23): gcc-plugin-annobin-11.5.0-11.el9.ppc64 521 kB/s |  39 kB     00:00    
(13/23): cpp-11.5.0-11.el9.ppc64le.rpm           38 MB/s | 9.2 MB     00:00    
(14/23): annobin-12.98-1.el9.ppc64le.rpm        7.2 MB/s | 1.1 MB     00:00    
(15/23): libasan-11.5.0-11.el9.ppc64le.rpm      8.4 MB/s | 430 kB     00:00    
(16/23): libubsan-11.5.0-11.el9.ppc64le.rpm     5.1 MB/s | 197 kB     00:00    
(17/23): llvm-filesystem-20.1.8-3.el9.ppc64le.r 241 kB/s | 9.1 kB     00:00    
(18/23): ncurses-c++-libs-6.2-12.20210508.el9.p 1.2 MB/s |  38 kB     00:00    
(19/23): ncurses-devel-6.2-12.20210508.el9.ppc6  13 MB/s | 728 kB     00:00    
(20/23): glibc-devel-2.34-231.el9_7.2.ppc64le.r 7.0 MB/s | 569 kB     00:00    
(21/23): llvm-libs-20.1.8-3.el9.ppc64le.rpm      46 MB/s |  30 MB     00:00    
(22/23): kernel-headers-5.14.0-611.26.1.el9_7.p  15 MB/s | 2.9 MB     00:00    
(23/23): gcc-11.5.0-11.el9.ppc64le.rpm           41 MB/s |  28 MB     00:00    
--------------------------------------------------------------------------------
Total                                            46 MB/s |  75 MB     00:01     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : libmpc-1.2.1-4.el9.ppc64le                            1/23 
  Installing       : htslib-1.23-1.el9.ppc64le                             2/23 
  Installing       : cpp-11.5.0-11.el9.ppc64le                             3/23 
  Installing       : kernel-headers-5.14.0-611.26.1.el9_7.ppc64le          4/23 
  Installing       : glibc-devel-2.34-231.el9_7.2.ppc64le                  5/23 
  Installing       : libxcrypt-devel-4.4.18-3.el9.ppc64le                  6/23 
  Installing       : ncurses-c++-libs-6.2-12.20210508.el9.ppc64le          7/23 
  Installing       : llvm-filesystem-20.1.8-3.el9.ppc64le                  8/23 
  Installing       : libubsan-11.5.0-11.el9.ppc64le                        9/23 
  Installing       : libasan-11.5.0-11.el9.ppc64le                        10/23 
  Installing       : libatomic-11.5.0-11.el9.ppc64le                      11/23 
  Installing       : make-1:4.3-8.el9.ppc64le                             12/23 
  Installing       : gcc-11.5.0-11.el9.ppc64le                            13/23 
  Running scriptlet: gcc-11.5.0-11.el9.ppc64le                            13/23 
  Installing       : libedit-3.1-38.20210216cvs.el9.ppc64le               14/23 
  Installing       : llvm-libs-20.1.8-3.el9.ppc64le                       15/23 
  Installing       : annobin-12.98-1.el9.ppc64le                          16/23 
  Running scriptlet: annobin-12.98-1.el9.ppc64le                          16/23 
  Installing       : gcc-plugin-annobin-11.5.0-11.el9.ppc64le             17/23 
  Running scriptlet: gcc-plugin-annobin-11.5.0-11.el9.ppc64le             17/23 
  Installing       : ncurses-devel-6.2-12.20210508.el9.ppc64le            18/23 
  Installing       : htslib-devel-1.23-1.el9.ppc64le                      19/23 
  Installing       : htslib-tools-1.23-1.el9.ppc64le                      20/23 
  Installing       : perl-lib-0.65-481.1.el9_6.ppc64le                    21/23 
  Installing       : perl-FindBin-1.51-481.1.el9_6.noarch                 22/23 
  Installing       : zlib-devel-1.2.11-40.el9.ppc64le                     23/23 
  Running scriptlet: zlib-devel-1.2.11-40.el9.ppc64le                     23/23 
  Verifying        : htslib-1.23-1.el9.ppc64le                             1/23 
  Verifying        : htslib-devel-1.23-1.el9.ppc64le                       2/23 
  Verifying        : htslib-tools-1.23-1.el9.ppc64le                       3/23 
  Verifying        : libedit-3.1-38.20210216cvs.el9.ppc64le                4/23 
  Verifying        : make-1:4.3-8.el9.ppc64le                              5/23 
  Verifying        : libatomic-11.5.0-11.el9.ppc64le                       6/23 
  Verifying        : libmpc-1.2.1-4.el9.ppc64le                            7/23 
  Verifying        : libxcrypt-devel-4.4.18-3.el9.ppc64le                  8/23 
  Verifying        : zlib-devel-1.2.11-40.el9.ppc64le                      9/23 
  Verifying        : perl-FindBin-1.51-481.1.el9_6.noarch                 10/23 
  Verifying        : perl-lib-0.65-481.1.el9_6.ppc64le                    11/23 
  Verifying        : cpp-11.5.0-11.el9.ppc64le                            12/23 
  Verifying        : gcc-plugin-annobin-11.5.0-11.el9.ppc64le             13/23 
  Verifying        : llvm-libs-20.1.8-3.el9.ppc64le                       14/23 
  Verifying        : annobin-12.98-1.el9.ppc64le                          15/23 
  Verifying        : gcc-11.5.0-11.el9.ppc64le                            16/23 
  Verifying        : libasan-11.5.0-11.el9.ppc64le                        17/23 
  Verifying        : libubsan-11.5.0-11.el9.ppc64le                       18/23 
  Verifying        : llvm-filesystem-20.1.8-3.el9.ppc64le                 19/23 
  Verifying        : ncurses-c++-libs-6.2-12.20210508.el9.ppc64le         20/23 
  Verifying        : ncurses-devel-6.2-12.20210508.el9.ppc64le            21/23 
  Verifying        : glibc-devel-2.34-231.el9_7.2.ppc64le                 22/23 
  Verifying        : kernel-headers-5.14.0-611.26.1.el9_7.ppc64le         23/23 
Installed products updated.

Installed:
  annobin-12.98-1.el9.ppc64le                                                   
  cpp-11.5.0-11.el9.ppc64le                                                     
  gcc-11.5.0-11.el9.ppc64le                                                     
  gcc-plugin-annobin-11.5.0-11.el9.ppc64le                                      
  glibc-devel-2.34-231.el9_7.2.ppc64le                                          
  htslib-1.23-1.el9.ppc64le                                                     
  htslib-devel-1.23-1.el9.ppc64le                                               
  htslib-tools-1.23-1.el9.ppc64le                                               
  kernel-headers-5.14.0-611.26.1.el9_7.ppc64le                                  
  libasan-11.5.0-11.el9.ppc64le                                                 
  libatomic-11.5.0-11.el9.ppc64le                                               
  libedit-3.1-38.20210216cvs.el9.ppc64le                                        
  libmpc-1.2.1-4.el9.ppc64le                                                    
  libubsan-11.5.0-11.el9.ppc64le                                                
  libxcrypt-devel-4.4.18-3.el9.ppc64le                                          
  llvm-filesystem-20.1.8-3.el9.ppc64le                                          
  llvm-libs-20.1.8-3.el9.ppc64le                                                
  make-1:4.3-8.el9.ppc64le                                                      
  ncurses-c++-libs-6.2-12.20210508.el9.ppc64le                                  
  ncurses-devel-6.2-12.20210508.el9.ppc64le                                     
  perl-FindBin-1.51-481.1.el9_6.noarch                                          
  perl-lib-0.65-481.1.el9_6.ppc64le                                             
  zlib-devel-1.2.11-40.el9.ppc64le                                              

Complete!
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769040000
Wrote: /builddir/build/SRPMS/samtools-1.23-1.el9.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                 5.8 kB/s | 1.5 kB     00:00    
Red Hat Enterprise Linux - BaseOS                56 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             61 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil  61 kB/s | 4.5 kB     00:00    
Extra Packages for Enterprise Linux 9 - ppc64le 581 kB/s |  26 kB     00:00    
Package gcc-11.5.0-11.el9.ppc64le is already installed.
Package htslib-devel-1.23-1.el9.ppc64le is already installed.
Package htslib-tools-1.23-1.el9.ppc64le is already installed.
Package make-1:4.3-8.el9.ppc64le is already installed.
Package ncurses-devel-6.2-12.20210508.el9.ppc64le is already installed.
Package perl-FindBin-1.51-481.1.el9_6.noarch is already installed.
Package perl-Getopt-Long-1:2.52-4.el9.noarch is already installed.
Package perl-lib-0.65-481.1.el9_6.ppc64le is already installed.
Package perl-interpreter-4:5.32.1-481.1.el9_6.ppc64le is already installed.
Package zlib-devel-1.2.11-40.el9.ppc64le is already installed.
Dependencies resolved.
Nothing to do.
Complete!
Finish: build setup for samtools-1.23-1.el9.src.rpm
Start: rpmbuild samtools-1.23-1.el9.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769040000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.QZUVGp
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf samtools-1.23
+ /usr/bin/bzip2 -dc /builddir/build/SOURCES/samtools-1.23.tar.bz2
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd samtools-1.23
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm -f INSTALL
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.SXNXs2
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.23
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.23/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./htslib-1.23/config.guess
++ basename ./htslib-1.23/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./htslib-1.23/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './htslib-1.23/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.23/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./htslib-1.23/config.sub
++ basename ./htslib-1.23/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./htslib-1.23/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './htslib-1.23/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ ./configure --build=powerpc64le-redhat-linux-gnu --host=powerpc64le-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' --prefix=/usr --with-htslib=system
checking for gawk... gawk
checking for powerpc64le-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for gcc option to enable large file support... none needed
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking for NcursesW wide-character library... yes
checking for working ncursesw/curses.h... yes
checking for library containing cbreak... none required
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
+ /usr/bin/make -O -j5 V=1 VERBOSE=1
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_aux.o bam_aux.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_index.o bam_index.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_cat.o bam_cat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_md.o bam_md.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_plbuf.o bam_plbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_reheader.o bam_reheader.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_fastq.o bam_fastq.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_plcmd.o bam_plcmd.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sam_view.o sam_view.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_rmdupse.o bam_rmdupse.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_rmdup.o bam_rmdup.c
echo '#define SAMTOOLS_VERSION "1.23"' > version.h
echo '#define SAMTOOLS_CC "gcc"' >> version.h
echo '#define SAMTOOLS_CPPFLAGS ""' >> version.h
echo '#define SAMTOOLS_CFLAGS "-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection"' >> version.h
echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 "' >> version.h
echo '#define SAMTOOLS_HTSDIR ""' >> version.h
echo '#define SAMTOOLS_LIBS ""' >> version.h
echo '#define SAMTOOLS_CURSES_LIB "-lncursesw"' >> version.h
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_color.o bam_color.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam2bcf.o bam2bcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_stat.o bam_stat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o cut_target.o cut_target.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sample.o sample.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_mate.o bam_mate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o coverage.o coverage.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o padding.o padding.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bedcov.o bedcov.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam2depth.o bam2depth.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o phase.o phase.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o faidx.o faidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o dict.o dict.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_flags.o bam_flags.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o stats_isize.o stats_isize.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bamshuf.o bamshuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_tview_curses.o bam_tview_curses.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_tview.o bam_tview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_split.o bam_split.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_tview_html.o bam_tview_html.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_quickcheck.o bam_quickcheck.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_lpileup.o bam_lpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_addrprg.o bam_addrprg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o tmp_file.o tmp_file.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_sort.o bam_sort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_import.o bam_import.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o stats.o stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_ampliconclip.o bam_ampliconclip.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_samples.o bam_samples.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o consensus_pileup.o consensus_pileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o reference.o reference.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o reset.o reset.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_markdup.o bam_markdup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o amplicon_stats.o amplicon_stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o cram_size.o cram_size.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sam_opts.o sam_opts.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sam_utils.o sam_utils.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam.o bam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_consensus.o bam_consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -DMAQ_LONGREADS -I.  -I./lz4  -c -o misc/maq2sam-long.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_checksum.o bam_checksum.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/maq2sam-short.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bedidx.o bedidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/md5sum-lite.o misc/md5sum-lite.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/md5fa.o misc/md5fa.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/ace2sam.o misc/ace2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/test.o test/test.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/wgsim.o misc/wgsim.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_count_rg.o test/split/test_count_rg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o lz4/lz4.o lz4/lz4.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/vcf-miniview.o test/vcf-miniview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bamtk.o bamtk.c
ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o bam.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_parse_args.o test/split/test_parse_args.c
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/maq2sam-long misc/maq2sam-long.o -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/ace2sam misc/ace2sam.o -lhts -lz 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/maq2sam-short misc/maq2sam-short.o -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/md5fa misc/md5fa.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o misc/wgsim misc/wgsim.o -lm -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/vcf-miniview test/vcf-miniview.o -lhts -lz  -lpthread
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz  -lpthread
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o samtools bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o reference.o reset.o cram_size.o bam_checksum.o ./lz4/lz4.o libst.a -lhts -lncursesw -lm -lz  -lpthread
lto-wrapper: warning: using serial compilation of 10 LTRANS jobs
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.dYliJx
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le
++ dirname /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le
+ cd samtools-1.23
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/share/man/man1
/usr/bin/install -p samtools /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin
/usr/bin/install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin
/usr/bin/install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin
/usr/bin/install -p -m 644 doc/samtools*.1 misc/wgsim.1 /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/share/man/man1
++ grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/ace2sam /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/blast2sam.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/bowtie2sam.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/export2sam.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/fasta-sanitize.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/interpolate_sam.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/maq2sam-long /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/maq2sam-short /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/md5fa /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/md5sum-lite /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/novo2sam.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/plot-ampliconstats /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/plot-bamstats /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/psl2sam.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/sam2vcf.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/samtools /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/samtools.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/seq_cache_populate.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/soap2sam.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/wgsim /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/wgsim_eval.pl /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/zoom2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/blast2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/bowtie2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/export2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/fasta-sanitize.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/interpolate_sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/novo2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/plot-ampliconstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/plot-bamstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/psl2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/sam2vcf.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/samtools.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/seq_cache_populate.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/soap2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/wgsim_eval.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/zoom2sam.pl
+ /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 1.23-1.el9 --unique-debug-suffix -1.23-1.el9.ppc64le --unique-debug-src-base samtools-1.23-1.el9.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/samtools-1.23
extracting debug info from /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/ace2sam
extracting debug info from /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/maq2sam-short
extracting debug info from /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/maq2sam-long
extracting debug info from /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/md5sum-lite
extracting debug info from /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/md5fa
extracting debug info from /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/samtools
extracting debug info from /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/bin/wgsim
original debug info size: 2688kB, size after compression: 2496kB
/usr/bin/sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
3173 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.GJkOen
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.23
+ ldd samtools
+ grep -E -e '/lib(64)?/libhts\.so\.' -e '/lib64/lp64d/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x00007fffa83a0000)
+ make test
test/split/test_count_rg
test/split/test_expand_format_string
test/split/test_filter_header_rg
test/split/test_parse_args
REF_PATH=: test/test.pl --exec bgzip= ${TEST_OPTS:-}
test_reference:
	/builddir/build/BUILD/samtools-1.23/samtools reference test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23/samtools reference -e test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23/samtools reference -r 17:1000-1500 test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23/samtools reference -r 17:1000-1500 -e test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23/samtools reference -@ 2 test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23/samtools reference -@ 2 -e test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23/samtools reference -@ 2 -r 17:1000-1500 test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23/samtools reference -@ 2 -r 17:1000-1500 -e test/reference/mpileup.1.tmp.cram
.. ok

bgzip -c -b 65272 -s 5 /tmp/qToG2ciSPD/bgzip.dat.gz
.. ok

bgzip -c -b 979200 -s 6 /tmp/qToG2ciSPD/bgzip.dat.gz
.. ok

bgzip -c -b 652804 -s 6 /tmp/qToG2ciSPD/bgzip.dat.gz
.. ok

/builddir/build/BUILD/samtools-1.23/samtools faidx /tmp/qToG2ciSPD/faidx.fa 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23/samtools faidx /tmp/qToG2ciSPD/faidx.fa.gz 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23/samtools faidx /tmp/qToG2ciSPD/faidx.fa 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23/samtools faidx /tmp/qToG2ciSPD/faidx.fa.gz 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23/samtools faidx /tmp/qToG2ciSPD/faidx.fa 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23/samtools faidx /tmp/qToG2ciSPD/faidx.fa.gz 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23/samtools faidx /tmp/qToG2ciSPD/faidx.fa 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23/samtools faidx /tmp/qToG2ciSPD/faidx.fa.gz 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23/samtools fqidx /tmp/qToG2ciSPD/fqidx.fq 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23/samtools fqidx /tmp/qToG2ciSPD/fqidx.fq.gz 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23/samtools fqidx /tmp/qToG2ciSPD/fqidx.fq 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23/samtools fqidx /tmp/qToG2ciSPD/fqidx.fq.gz 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23/samtools fqidx /tmp/qToG2ciSPD/fqidx.fq 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23/samtools fqidx /tmp/qToG2ciSPD/fqidx.fq.gz 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23/samtools fqidx /tmp/qToG2ciSPD/fqidx.fq 1:99998-100007
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23/samtools fqidx /tmp/qToG2ciSPD/fqidx.fq.gz 1:99998-100007
.. ok

.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.23/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /builddir/build/BUILD/samtools-1.23/test/dat/dict.fa
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.23/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /tmp/qToG2ciSPD/dict.fa.gz
.. ok

test_dict:
	cat /builddir/build/BUILD/samtools-1.23/test/dat/dict.fa | /builddir/build/BUILD/samtools-1.23/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.23/samtools dict -AH < /builddir/build/BUILD/samtools-1.23/test/dat/dict.alias.fa
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.23/samtools dict -H -l /builddir/build/BUILD/samtools-1.23/test/dat/dict.alt < /builddir/build/BUILD/samtools-1.23/test/dat/dict.alias.fa
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view /tmp/qToG2ciSPD/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view /tmp/qToG2ciSPD/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view -X /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /tmp/qToG2ciSPD/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view -X /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /tmp/qToG2ciSPD/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools merge -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam.bai /tmp/qToG2ciSPD/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view -X /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /tmp/qToG2ciSPD/test_input_1_b_opt.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index -M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam && cat /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view -X /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index -c /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.bam /tmp/qToG2ciSPD/auto_indexed.csi && cat /tmp/qToG2ciSPD/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.cram /tmp/qToG2ciSPD/auto_indexed.crai && cat /tmp/qToG2ciSPD/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index -c /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.sam /tmp/qToG2ciSPD/auto_indexed.csi && cat /tmp/qToG2ciSPD/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view -@ 2 /tmp/qToG2ciSPD/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view -@ 2 /tmp/qToG2ciSPD/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index -@ 2 /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /tmp/qToG2ciSPD/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /tmp/qToG2ciSPD/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam.bai /tmp/qToG2ciSPD/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /tmp/qToG2ciSPD/test_input_1_b_opt.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index -@ 2 /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index -@ 2 -M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam && cat /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.bam /tmp/qToG2ciSPD/auto_indexed.csi && cat /tmp/qToG2ciSPD/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index -@ 2 /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.cram /tmp/qToG2ciSPD/auto_indexed.crai && cat /tmp/qToG2ciSPD/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.sam /tmp/qToG2ciSPD/auto_indexed.csi && cat /tmp/qToG2ciSPD/auto_indexed.csi
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23/samtools mpileup -b /tmp/qToG2ciSPD/mpileup.bam.list -f /tmp/qToG2ciSPD/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23/samtools mpileup -b /tmp/qToG2ciSPD/mpileup.cram.list -f /tmp/qToG2ciSPD/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23/samtools mpileup -b /tmp/qToG2ciSPD/mpileup.bam.urllist -f /tmp/qToG2ciSPD/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23/samtools mpileup -b /tmp/qToG2ciSPD/mpileup.cram.urllist -f /tmp/qToG2ciSPD/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23/samtools mpileup -B --ff 0x14 -f /tmp/qToG2ciSPD/mpileup.ref.fa.gz -r17:1050-1060 /tmp/qToG2ciSPD/mpileup.1.bam | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23/samtools mpileup -B --ff 0x14 -f /tmp/qToG2ciSPD/mpileup.ref.fa.gz -r17:1050-1060 /tmp/qToG2ciSPD/mpileup.1.cram | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23/samtools mpileup /builddir/build/BUILD/samtools-1.23/test/mpileup/overlap.bam | grep 128814202
.. ok

test_usage:
	samtools
test_view:
	Generating test data file test/test.pl: no IO::Pty module or can't open pty; skipping usage tests
.................. done
	1: SAM -> BAM -> SAM                                        .. ok

	2: SAM -> uncompressed BAM                                  .. ok

	3: uncompressed BAM -> SAM and compare                      .. ok

	4: SAM -> fast compressed BAM                               .. ok

	5: fast compressed BAM -> SAM and compare                   .. ok

	6: SAM -> CRAM -> SAM (UR header tags)                      .. ok

	7: SAM -> CRAM -> SAM (M5 header tags)                      .. ok

	8: BAM -> CRAM with UR -> SAM                               .. ok

	9: SAM -> BAM (M5 header tags)                              .. ok

	10: SAM -> BAM -> CRAM -> SAM (M5 header tags)              .. ok

	11: CRAM -> BAM with UR                                     .. ok

	12: CRAM -> BAM with M5                                     .. ok

	13: SAM -> SAM via stdout                                   .. ok

	14: SAM -> BAM via stdout                                   .. ok

	15: SAM -> CRAM via stdout                                  .. ok

	16: SAM from stdin -> SAM                                   .. ok

	17: BAM from stdin -> SAM                                   .. ok

	18: CRAM from stdin -> SAM                                  .. ok

	19: samtools view -H (SAM input)                            .. ok

	20: samtools view -H (BAM input)                            .. ok

	21: samtools view -H (CRAM input)                           .. ok

	22: No headers (SAM input)                                  .. ok

	23: No headers (BAM input)                                  .. ok

	24: No headers (CRAM input)                                 .. ok

	25: Filter -f 128 (SAM input)                               .. ok

	26: Count -f 128 (SAM input)                                .. ok

	27: Filter -f 128 (BAM input)                               .. ok

	28: Count -f 128 (BAM input)                                .. ok

	29: Filter -f 128 (CRAM input)                              .. ok

	30: Count -f 128 (CRAM input)                               .. ok

	31: Filter -F 128 (SAM input)                               .. ok

	32: Count -F 128 (SAM input)                                .. ok

	33: Filter -F 128 (BAM input)                               .. ok

	34: Count -F 128 (BAM input)                                .. ok

	35: Filter -F 128 (CRAM input)                              .. ok

	36: Count -F 128 (CRAM input)                               .. ok

	37: Filter -F 128 -f 2 (SAM input)                          .. ok

	38: Count -F 128 -f 2 (SAM input)                           .. ok

	39: Filter -F 128 -f 2 (BAM input)                          .. ok

	40: Count -F 128 -f 2 (BAM input)                           .. ok

	41: Filter -F 128 -f 2 (CRAM input)                         .. ok

	42: Count -F 128 -f 2 (CRAM input)                          .. ok

	43: Filter -r grp2 (SAM input)                              .. ok

	44: Count -r grp2 (SAM input)                               .. ok

	45: Filter -r grp2 (BAM input)                              .. ok

	46: Count -r grp2 (BAM input)                               .. ok

	47: Filter -r grp2 (CRAM input)                             .. ok

	48: Count -r grp2 (CRAM input)                              .. ok

	49: Filter -R /tmp/qToG2ciSPD/view.001.fogn (SAM input)     .. ok

	50: Count -R /tmp/qToG2ciSPD/view.001.fogn (SAM input)      .. ok

	51: Filter -R /tmp/qToG2ciSPD/view.001.fogn (BAM input)     .. ok

	52: Count -R /tmp/qToG2ciSPD/view.001.fogn (BAM input)      .. ok

	53: Filter -R /tmp/qToG2ciSPD/view.001.fogn (CRAM input)    .. ok

	54: Count -R /tmp/qToG2ciSPD/view.001.fogn (CRAM input)     .. ok

	55: Filter -R /tmp/qToG2ciSPD/view.001.fogn -r grp2 (SAM input).. ok

	56: Count -R /tmp/qToG2ciSPD/view.001.fogn -r grp2 (SAM input).. ok

	57: Filter -R /tmp/qToG2ciSPD/view.001.fogn -r grp2 (BAM input).. ok

	58: Count -R /tmp/qToG2ciSPD/view.001.fogn -r grp2 (BAM input).. ok

	59: Filter -R /tmp/qToG2ciSPD/view.001.fogn -r grp2 (CRAM input).. ok

	60: Count -R /tmp/qToG2ciSPD/view.001.fogn -r grp2 (CRAM input).. ok

	61: Filter -r grp2 -R /tmp/qToG2ciSPD/view.001.fogn (SAM input).. ok

	62: Count -r grp2 -R /tmp/qToG2ciSPD/view.001.fogn (SAM input).. ok

	63: Filter -r grp2 -R /tmp/qToG2ciSPD/view.001.fogn (BAM input).. ok

	64: Count -r grp2 -R /tmp/qToG2ciSPD/view.001.fogn (BAM input).. ok

	65: Filter -r grp2 -R /tmp/qToG2ciSPD/view.001.fogn (CRAM input).. ok

	66: Count -r grp2 -R /tmp/qToG2ciSPD/view.001.fogn (CRAM input).. ok

	67: Filter -N /tmp/qToG2ciSPD/view.001.forn (SAM input)     .. ok

	68: Count -N /tmp/qToG2ciSPD/view.001.forn (SAM input)      .. ok

	69: Filter -N /tmp/qToG2ciSPD/view.001.forn (BAM input)     .. ok

	70: Count -N /tmp/qToG2ciSPD/view.001.forn (BAM input)      .. ok

	71: Filter -N /tmp/qToG2ciSPD/view.001.forn (CRAM input)    .. ok

	72: Count -N /tmp/qToG2ciSPD/view.001.forn (CRAM input)     .. ok

	73: Filter -d BC (SAM input)                                .. ok

	74: Count -d BC (SAM input)                                 .. ok

	75: Filter -d BC (BAM input)                                .. ok

	76: Count -d BC (BAM input)                                 .. ok

	77: Filter -d BC (CRAM input)                               .. ok

	78: Count -d BC (CRAM input)                                .. ok

	79: Filter -d BC:TGCA (SAM input)                           .. ok

	80: Count -d BC:TGCA (SAM input)                            .. ok

	81: Filter -d BC:TGCA (BAM input)                           .. ok

	82: Count -d BC:TGCA (BAM input)                            .. ok

	83: Filter -d BC:TGCA (CRAM input)                          .. ok

	84: Count -d BC:TGCA (CRAM input)                           .. ok

	85: Filter -D BC:/tmp/qToG2ciSPD/view.001.fobc (SAM input)  .. ok

	86: Count -D BC:/tmp/qToG2ciSPD/view.001.fobc (SAM input)   .. ok

	87: Filter -D BC:/tmp/qToG2ciSPD/view.001.fobc (BAM input)  .. ok

	88: Count -D BC:/tmp/qToG2ciSPD/view.001.fobc (BAM input)   .. ok

	89: Filter -D BC:/tmp/qToG2ciSPD/view.001.fobc (CRAM input) .. ok

	90: Count -D BC:/tmp/qToG2ciSPD/view.001.fobc (CRAM input)  .. ok

	91: Filter -D BC:/tmp/qToG2ciSPD/view.001.fobc -d BC:TGCA (SAM input).. ok

	92: Count -D BC:/tmp/qToG2ciSPD/view.001.fobc -d BC:TGCA (SAM input).. ok

	93: Filter -D BC:/tmp/qToG2ciSPD/view.001.fobc -d BC:TGCA (BAM input).. ok

	94: Count -D BC:/tmp/qToG2ciSPD/view.001.fobc -d BC:TGCA (BAM input).. ok

	95: Filter -D BC:/tmp/qToG2ciSPD/view.001.fobc -d BC:TGCA (CRAM input).. ok

	96: Count -D BC:/tmp/qToG2ciSPD/view.001.fobc -d BC:TGCA (CRAM input).. ok

	97: Filter -d BC:TGCA -D BC:/tmp/qToG2ciSPD/view.001.fobc (SAM input).. ok

	98: Count -d BC:TGCA -D BC:/tmp/qToG2ciSPD/view.001.fobc (SAM input).. ok

	99: Filter -d BC:TGCA -D BC:/tmp/qToG2ciSPD/view.001.fobc (BAM input).. ok

	100: Count -d BC:TGCA -D BC:/tmp/qToG2ciSPD/view.001.fobc (BAM input).. ok

	101: Filter -d BC:TGCA -D BC:/tmp/qToG2ciSPD/view.001.fobc (CRAM input).. ok

	102: Count -d BC:TGCA -D BC:/tmp/qToG2ciSPD/view.001.fobc (CRAM input).. ok

	103: Filter -D RG:/tmp/qToG2ciSPD/view.001.fogn (SAM input) .. ok

	104: Count -D RG:/tmp/qToG2ciSPD/view.001.fogn (SAM input)  .. ok

	105: Filter -D RG:/tmp/qToG2ciSPD/view.001.fogn (BAM input) .. ok

	106: Count -D RG:/tmp/qToG2ciSPD/view.001.fogn (BAM input)  .. ok

	107: Filter -D RG:/tmp/qToG2ciSPD/view.001.fogn (CRAM input).. ok

	108: Count -D RG:/tmp/qToG2ciSPD/view.001.fogn (CRAM input) .. ok

	109: Filter -d NE:TGCA (SAM input)                          .. ok

	110: Count -d NE:TGCA (SAM input)                           .. ok

	111: Filter -d NE:TGCA (BAM input)                          .. ok

	112: Count -d NE:TGCA (BAM input)                           .. ok

	113: Filter -d NE:TGCA (CRAM input)                         .. ok

	114: Count -d NE:TGCA (CRAM input)                          .. ok

	115: Filter -d TGCA (SAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -o /tmp/qToG2ciSPD/view.test115.sam -h -d TGCA /tmp/qToG2ciSPD/view.001.sam --no-PG


.. expected failure

	116: Count -d TGCA (SAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -c -d TGCA /tmp/qToG2ciSPD/view.001.sam --no-PG


.. expected failure

	117: Filter -d TGCA (BAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -o /tmp/qToG2ciSPD/view.test117.sam -h -d TGCA /tmp/qToG2ciSPD/view.test001.bam --no-PG


.. expected failure

	118: Count -d TGCA (BAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -c -d TGCA /tmp/qToG2ciSPD/view.test001.bam --no-PG


.. expected failure

	119: Filter -d TGCA (CRAM input)                            samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -o /tmp/qToG2ciSPD/view.test119.sam -h -d TGCA /tmp/qToG2ciSPD/view.test006.cram --no-PG


.. expected failure

	120: Count -d TGCA (CRAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -c -d TGCA /tmp/qToG2ciSPD/view.test006.cram --no-PG


.. expected failure

	121: Filter -D BClong:/tmp/qToG2ciSPD/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/qToG2ciSPD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -o /tmp/qToG2ciSPD/view.test121.sam -h -D BClong:/tmp/qToG2ciSPD/view.001.fobc /tmp/qToG2ciSPD/view.001.sam --no-PG


.. expected failure

	122: Count -D BClong:/tmp/qToG2ciSPD/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/qToG2ciSPD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -c -D BClong:/tmp/qToG2ciSPD/view.001.fobc /tmp/qToG2ciSPD/view.001.sam --no-PG


.. expected failure

	123: Filter -D BClong:/tmp/qToG2ciSPD/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/qToG2ciSPD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -o /tmp/qToG2ciSPD/view.test123.sam -h -D BClong:/tmp/qToG2ciSPD/view.001.fobc /tmp/qToG2ciSPD/view.test001.bam --no-PG


.. expected failure

	124: Count -D BClong:/tmp/qToG2ciSPD/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/qToG2ciSPD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -c -D BClong:/tmp/qToG2ciSPD/view.001.fobc /tmp/qToG2ciSPD/view.test001.bam --no-PG


.. expected failure

	125: Filter -D BClong:/tmp/qToG2ciSPD/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/qToG2ciSPD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -o /tmp/qToG2ciSPD/view.test125.sam -h -D BClong:/tmp/qToG2ciSPD/view.001.fobc /tmp/qToG2ciSPD/view.test006.cram --no-PG


.. expected failure

	126: Count -D BClong:/tmp/qToG2ciSPD/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/qToG2ciSPD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -c -D BClong:/tmp/qToG2ciSPD/view.001.fobc /tmp/qToG2ciSPD/view.test006.cram --no-PG


.. expected failure

	127: Filter -d BC:ACGT -d RG:grp2 (SAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -o /tmp/qToG2ciSPD/view.test127.sam -h -d BC:ACGT -d RG:grp2 /tmp/qToG2ciSPD/view.001.sam --no-PG


.. expected failure

	128: Count -d BC:ACGT -d RG:grp2 (SAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/qToG2ciSPD/view.001.sam --no-PG


.. expected failure

	129: Filter -d BC:ACGT -d RG:grp2 (BAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -o /tmp/qToG2ciSPD/view.test129.sam -h -d BC:ACGT -d RG:grp2 /tmp/qToG2ciSPD/view.test001.bam --no-PG


.. expected failure

	130: Count -d BC:ACGT -d RG:grp2 (BAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/qToG2ciSPD/view.test001.bam --no-PG


.. expected failure

	131: Filter -d BC:ACGT -d RG:grp2 (CRAM input)              samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -o /tmp/qToG2ciSPD/view.test131.sam -h -d BC:ACGT -d RG:grp2 /tmp/qToG2ciSPD/view.test006.cram --no-PG


.. expected failure

	132: Count -d BC:ACGT -d RG:grp2 (CRAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/qToG2ciSPD/view.test006.cram --no-PG


.. expected failure

	133: Filter -d NM:13 (SAM input)                            .. ok

	134: Count -d NM:13 (SAM input)                             .. ok

	135: Filter -d NM:13 (BAM input)                            .. ok

	136: Count -d NM:13 (BAM input)                             .. ok

	137: Filter -d NM:13 (CRAM input)                           .. ok

	138: Count -d NM:13 (CRAM input)                            .. ok

	139: Filter -d ab:z (SAM input)                             .. ok

	140: Count -d ab:z (SAM input)                              .. ok

	141: Filter -d ab:z (BAM input)                             .. ok

	142: Count -d ab:z (BAM input)                              .. ok

	143: Filter -d ab:z (CRAM input)                            .. ok

	144: Count -d ab:z (CRAM input)                             .. ok

	145: Filter -l Library 2 (SAM input)                        .. ok

	146: Count -l Library 2 (SAM input)                         .. ok

	147: Filter -l Library 2 (BAM input)                        .. ok

	148: Count -l Library 2 (BAM input)                         .. ok

	149: Filter -l Library 2 (CRAM input)                       .. ok

	150: Count -l Library 2 (CRAM input)                        .. ok

	151: Filter -l Library 3 (SAM input)                        .. ok

	152: Count -l Library 3 (SAM input)                         .. ok

	153: Filter -l Library 3 (BAM input)                        .. ok

	154: Count -l Library 3 (BAM input)                         .. ok

	155: Filter -l Library 3 (CRAM input)                       .. ok

	156: Count -l Library 3 (CRAM input)                        .. ok

	157: Filter -q 50 (SAM input)                               .. ok

	158: Count -q 50 (SAM input)                                .. ok

	159: Filter -q 50 (BAM input)                               .. ok

	160: Count -q 50 (BAM input)                                .. ok

	161: Filter -q 50 (CRAM input)                              .. ok

	162: Count -q 50 (CRAM input)                               .. ok

	163: Filter -q 99 (SAM input)                               .. ok

	164: Count -q 99 (SAM input)                                .. ok

	165: Filter -q 99 (BAM input)                               .. ok

	166: Count -q 99 (BAM input)                                .. ok

	167: Filter -q 99 (CRAM input)                              .. ok

	168: Count -q 99 (CRAM input)                               .. ok

	169: Filter -q 100 (SAM input)                              .. ok

	170: Count -q 100 (SAM input)                               .. ok

	171: Filter -q 100 (BAM input)                              .. ok

	172: Count -q 100 (BAM input)                               .. ok

	173: Filter -q 100 (CRAM input)                             .. ok

	174: Count -q 100 (CRAM input)                              .. ok

	175: Filter -x fa (SAM input)                               .. ok

	176: Count -x fa (SAM input)                                .. ok

	177: Filter -x fa (BAM input)                               .. ok

	178: Count -x fa (BAM input)                                .. ok

	179: Filter -x fa (CRAM input)                              .. ok

	180: Count -x fa (CRAM input)                               .. ok

	181: Filter -x fa -x ha (SAM input)                         .. ok

	182: Count -x fa -x ha (SAM input)                          .. ok

	183: Filter -x fa -x ha (BAM input)                         .. ok

	184: Count -x fa -x ha (BAM input)                          .. ok

	185: Filter -x fa -x ha (CRAM input)                        .. ok

	186: Count -x fa -x ha (CRAM input)                         .. ok

	187: Filter -x fa,ha (SAM input)                            .. ok

	188: Count -x fa,ha (SAM input)                             .. ok

	189: Filter -x fa,ha (BAM input)                            .. ok

	190: Count -x fa,ha (BAM input)                             .. ok

	191: Filter -x fa,ha (CRAM input)                           .. ok

	192: Count -x fa,ha (CRAM input)                            .. ok

	193: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	194: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	195: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	196: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	197: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	198: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	199: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	200: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	201: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	202: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	203: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	204: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	205: Filter -x fa -r grp2 (SAM input)                       .. ok

	206: Count -x fa -r grp2 (SAM input)                        .. ok

	207: Filter -x fa -r grp2 (BAM input)                       .. ok

	208: Count -x fa -r grp2 (BAM input)                        .. ok

	209: Filter -x fa -r grp2 (CRAM input)                      .. ok

	210: Count -x fa -r grp2 (CRAM input)                       .. ok

	211: Filter -x RG -r grp2 (SAM input)                       .. ok

	212: Count -x RG -r grp2 (SAM input)                        .. ok

	213: Filter -x RG -r grp2 (BAM input)                       .. ok

	214: Count -x RG -r grp2 (BAM input)                        .. ok

	215: Filter -x RG -r grp2 (CRAM input)                      .. ok

	216: Count -x RG -r grp2 (CRAM input)                       .. ok

	217: Filter -m 10 (SAM input)                               .. ok

	218: Count -m 10 (SAM input)                                .. ok

	219: Filter -m 10 (BAM input)                               .. ok

	220: Count -m 10 (BAM input)                                .. ok

	221: Filter -m 10 (CRAM input)                              .. ok

	222: Count -m 10 (CRAM input)                               .. ok

	223: Filter -m 11 (SAM input)                               .. ok

	224: Count -m 11 (SAM input)                                .. ok

	225: Filter -m 11 (BAM input)                               .. ok

	226: Count -m 11 (BAM input)                                .. ok

	227: Filter -m 11 (CRAM input)                              .. ok

	228: Count -m 11 (CRAM input)                               .. ok

	229: Filter -m 15 (SAM input)                               .. ok

	230: Count -m 15 (SAM input)                                .. ok

	231: Filter -m 15 (BAM input)                               .. ok

	232: Count -m 15 (BAM input)                                .. ok

	233: Filter -m 15 (CRAM input)                              .. ok

	234: Count -m 15 (CRAM input)                               .. ok

	235: Filter -m 16 (SAM input)                               .. ok

	236: Count -m 16 (SAM input)                                .. ok

	237: Filter -m 16 (BAM input)                               .. ok

	238: Count -m 16 (BAM input)                                .. ok

	239: Filter -m 16 (CRAM input)                              .. ok

	240: Count -m 16 (CRAM input)                               .. ok

	241: Filter -e !(flag & 128) && (flag & 2) (SAM input)      .. ok

	242: Count -e !(flag & 128) && (flag & 2) (SAM input)       .. ok

	243: Filter -e !(flag & 128) && (flag & 2) (BAM input)      .. ok

	244: Count -e !(flag & 128) && (flag & 2) (BAM input)       .. ok

	245: Filter -e !(flag & 128) && (flag & 2) (CRAM input)     .. ok

	246: Count -e !(flag & 128) && (flag & 2) (CRAM input)      .. ok

	247: Filter -e [BC] (SAM input)                             .. ok

	248: Count -e [BC] (SAM input)                              .. ok

	249: Filter -e [BC] (BAM input)                             .. ok

	250: Count -e [BC] (BAM input)                              .. ok

	251: Filter -e [BC] (CRAM input)                            .. ok

	252: Count -e [BC] (CRAM input)                             .. ok

	253: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	254: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	255: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	256: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	257: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	258: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	259: Filter -e mapq >= 50 (SAM input)                       .. ok

	260: Count -e mapq >= 50 (SAM input)                        .. ok

	261: Filter -e mapq >= 50 (BAM input)                       .. ok

	262: Count -e mapq >= 50 (BAM input)                        .. ok

	263: Filter -e mapq >= 50 (CRAM input)                      .. ok

	264: Count -e mapq >= 50 (CRAM input)                       .. ok

	265: Filter -e mapq >= 99 (SAM input)                       .. ok

	266: Count -e mapq >= 99 (SAM input)                        .. ok

	267: Filter -e mapq >= 99 (BAM input)                       .. ok

	268: Count -e mapq >= 99 (BAM input)                        .. ok

	269: Filter -e mapq >= 99 (CRAM input)                      .. ok

	270: Count -e mapq >= 99 (CRAM input)                       .. ok

	271: Filter -e mapq >= 100 (SAM input)                      .. ok

	272: Count -e mapq >= 100 (SAM input)                       .. ok

	273: Filter -e mapq >= 100 (BAM input)                      .. ok

	274: Count -e mapq >= 100 (BAM input)                       .. ok

	275: Filter -e mapq >= 100 (CRAM input)                     .. ok

	276: Count -e mapq >= 100 (CRAM input)                      .. ok

	277: 1bp reads file SAM -> BAM -> SAM                       .. ok

	278: 1bp reads file SAM -> CRAM -> SAM                      .. ok

	278: Region  Z (BAM input)                                  .. ok

	279: Count  Z (BAM input)                                   .. ok

	280: Region  Z (CRAM input)                                 .. ok

	281: Count  Z (CRAM input)                                  .. ok

	282: Region  Z:30 (BAM input)                               .. ok

	283: Count  Z:30 (BAM input)                                .. ok

	284: Region  Z:30 (CRAM input)                              .. ok

	285: Count  Z:30 (CRAM input)                               .. ok

	286: Region  Z:20-40 (BAM input)                            .. ok

	287: Count  Z:20-40 (BAM input)                             .. ok

	288: Region  Z:20-40 (CRAM input)                           .. ok

	289: Count  Z:20-40 (CRAM input)                            .. ok

	290: Region  ref1 (BAM input)                               .. ok

	291: Count  ref1 (BAM input)                                .. ok

	292: Region  ref1 (CRAM input)                              .. ok

	293: Count  ref1 (CRAM input)                               .. ok

	294: Region  ref1:15 (BAM input)                            .. ok

	295: Count  ref1:15 (BAM input)                             .. ok

	296: Region  ref1:15 (CRAM input)                           .. ok

	297: Count  ref1:15 (CRAM input)                            .. ok

	298: Region  ref1:15-45 (BAM input)                         .. ok

	299: Count  ref1:15-45 (BAM input)                          .. ok

	300: Region  ref1:15-45 (CRAM input)                        .. ok

	301: Count  ref1:15-45 (CRAM input)                         .. ok

	302: Region  ref1:15-45 ref2 (BAM input)                    .. ok

	303: Count  ref1:15-45 ref2 (BAM input)                     .. ok

	304: Region  ref1:15-45 ref2 (CRAM input)                   .. ok

	305: Count  ref1:15-45 ref2 (CRAM input)                    .. ok

	306: Region  ref1:15-45 ref2:16 (BAM input)                 .. ok

	307: Count  ref1:15-45 ref2:16 (BAM input)                  .. ok

	308: Region  ref1:15-45 ref2:16 (CRAM input)                .. ok

	309: Count  ref1:15-45 ref2:16 (CRAM input)                 .. ok

	310: Region  ref1:15-45 ref2:16-31 (BAM input)              .. ok

	311: Count  ref1:15-45 ref2:16-31 (BAM input)               .. ok

	312: Region  ref1:15-45 ref2:16-31 (CRAM input)             .. ok

	313: Count  ref1:15-45 ref2:16-31 (CRAM input)              .. ok

	314: Region  ref1:15-15 ref1:45-45 (BAM input)              .. ok

	315: Count  ref1:15-15 ref1:45-45 (BAM input)               .. ok

	316: Region  ref1:15-15 ref1:45-45 (CRAM input)             .. ok

	317: Count  ref1:15-15 ref1:45-45 (CRAM input)              .. ok

	318: Region -f 128 ref1 (BAM input)                         .. ok

	319: Count -f 128 ref1 (BAM input)                          .. ok

	320: Region -f 128 ref1 (CRAM input)                        .. ok

	321: Count -f 128 ref1 (CRAM input)                         .. ok

	322: Region -q 50 ref1:15-45 (BAM input)                    .. ok

	323: Count -q 50 ref1:15-45 (BAM input)                     .. ok

	324: Region -q 50 ref1:15-45 (CRAM input)                   .. ok

	325: Count -q 50 ref1:15-45 (CRAM input)                    .. ok

	326: Region -r grp2 ref1:15-45 (BAM input)                  .. ok

	327: Count -r grp2 ref1:15-45 (BAM input)                   .. ok

	328: Region -r grp2 ref1:15-45 (CRAM input)                 .. ok

	329: Count -r grp2 ref1:15-45 (CRAM input)                  .. ok

	330: Region  * (BAM input)                                  .. ok

	331: Count  * (BAM input)                                   .. ok

	332: Region  * (CRAM input)                                 .. ok

	333: Count  * (CRAM input)                                  .. ok

	334: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed  (BAM input).. ok

	335: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed  (BAM input).. ok

	336: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed  (CRAM input).. ok

	337: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed  (CRAM input).. ok

	338: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.02.bed  (BAM input).. ok

	339: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.02.bed  (BAM input).. ok

	340: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.02.bed  (CRAM input).. ok

	341: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.02.bed  (CRAM input).. ok

	342: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed  (BAM input).. ok

	343: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed  (BAM input).. ok

	344: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed  (CRAM input).. ok

	345: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed  (CRAM input).. ok

	346: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.02.bed  (BAM input).. ok

	347: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.02.bed  (BAM input).. ok

	348: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.02.bed  (CRAM input).. ok

	349: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.02.bed  (CRAM input).. ok

	350: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.03.bed  (BAM input).. ok

	351: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.03.bed  (BAM input).. ok

	352: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.03.bed  (CRAM input).. ok

	353: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.03.bed  (CRAM input).. ok

	354: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z (BAM input).. ok

	355: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z (BAM input).. ok

	356: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z (CRAM input).. ok

	357: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z (CRAM input).. ok

	358: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	359: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	360: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	361: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	362: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	363: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	364: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	365: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	366: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	367: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	368: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	369: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	370: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	371: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	372: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	373: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	374: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref2 (BAM input).. ok

	375: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref2 (BAM input).. ok

	376: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	377: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	378: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	379: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	380: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	381: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	382: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	383: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	384: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	385: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	386: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	387: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	388: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	389: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	390: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	391: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	392: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	393: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	394: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	395: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	396: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	397: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	398: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	399: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	400: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	401: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	402: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	403: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	404: Region -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	405: Count -L /builddir/build/BUILD/samtools-1.23/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	406: -L with nested regions                                 .. ok

	407: Make BAM with no M5/UR tags                            .. ok

	408: Add @SQ with -t (SAM -> SAM)                           .. ok

	409: Add @SQ with -T (SAM -> SAM)                           .. ok

	410: Add @SQ with -t (BAM -> SAM)                           .. ok

	411: Add @SQ with -T (BAM -> SAM)                           .. ok

	412: Add @SQ with -t (SAM -> BAM)                           .. ok

	413: Add @SQ with -T (SAM -> BAM)                           .. ok

	414: Add @SQ with -t (BAM -> BAM)                           .. ok

	415: Add @SQ with -T (BAM -> BAM)                           .. ok

	416: Add @SQ with -t (SAM -> CRAM)                          .. ok

	417: Add @SQ with -T (SAM -> CRAM)                          .. ok

	418: Add @SQ with -t (BAM -> CRAM)                          .. ok

	419: Add @SQ with -T (BAM -> CRAM)                          .. ok

	420: Make CRAM with no UR field                             .. ok

	421: Decoding CRAM with no UR field via -T                  .. ok

	422: CIGAR B-operator removal                               .. ok

	423: Big SAM -> BAM                                         .. ok

	424: Big SAM -> BAM (2 threads)                             .. ok

	425: Big SAM -> BAM (4 threads)                             .. ok

	426: Big SAM -> CRAM                                        .. ok

	427: Big SAM -> CRAM (2 threads)                            .. ok

	428: Big SAM -> CRAM (4 threads)                            .. ok

	429: Subsample 0.2 (SAM input) ............ ok

	430: Subsample 0.5 (SAM input) ............ ok

	431: Subsample 0.8 (SAM input) ............ ok

	432: Subsample 0.2 (BAM input) ............ ok

	433: Subsample 0.5 (BAM input) ............ ok

	434: Subsample 0.8 (BAM input) ............ ok

	435: Subsample 0.2 (CRAM input) ............ ok

	436: Subsample 0.5 (CRAM input) ............ ok

	437: Subsample 0.8 (CRAM input) ............ ok

	438: SAM add PG                                             .. ok

	439: Unset dup flag, remove dt and do tags                  .. ok

	440: Unmap dup flagged reads.                               .. ok

	441: Unmap dup flagged reads.                               .. ok

	442: fetch pairs                                            .. ok

	443: fetch pairs                                            .. ok

	444: fetch pairs                                            .. ok

test_head:
	/builddir/build/BUILD/samtools-1.23/samtools head /builddir/build/BUILD/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23/samtools head -h 0 /builddir/build/BUILD/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23/samtools head -h 1 /builddir/build/BUILD/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23/samtools head -h 5 /builddir/build/BUILD/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23/samtools head -h 29 /builddir/build/BUILD/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23/samtools head -h 30 /builddir/build/BUILD/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23/samtools head -n 0 /builddir/build/BUILD/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23/samtools head -n 1 /builddir/build/BUILD/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23/samtools head -n 5 /builddir/build/BUILD/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23/samtools head -h 5 -n 5 < /builddir/build/BUILD/samtools-1.23/test/dat/view.001.sam
.. ok

test_cat:
	Generating test data file .................. done
	Generate BAM file #1                                        .. ok

	Generate BAM region file #1                                 .. ok

	Generate CRAM file #1                                       .. ok

	Generating test data file .................. done
	Generate BAM file #2                                        .. ok

	Generate BAM region file #2                                 .. ok

	Generate CRAM file #2                                       .. ok

	Generating test data file .................. done
	Generate BAM file #3                                        .. ok

	Generate BAM region file #3                                 .. ok

	Generate CRAM file #3                                       .. ok

	Generating test data file .................. done
	Generate BAM file #4                                        .. ok

	Generate BAM region file #4                                 .. ok

	Generate CRAM file #4                                       .. ok

	1: cat BAM files                                            .. ok

	2: cat recompressed BAM files                               .. ok

	3: cat CRAM files                                           .. ok

	4: cat CRAM subregion files                                 .. ok

	5: cat BAM files to stdout                                  .. ok

	6: cat recompressed BAM files to stdout                     .. ok

	7: cat CRAM files to stdout                                 .. ok

	8: cat CRAM subregion files to stdout                       .. ok

	9: cat CRAM part 1/2                                        .. ok

	9: cat CRAM part 2/2                                        .. ok

	9: cat CRAM parts 1/2 + 2/2                                 .. ok

	10: cat BAM files with new header                           .. ok

	11: cat recompressed BAM files with new header              .. ok

	12: cat CRAM files with new header                          .. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG -0 test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.23/samtools fastq -0 /builddir/build/BUILD/samtools-1.23/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG -s test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.23/samtools fastq -0 /builddir/build/BUILD/samtools-1.23/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG -s test/bam2fq/5.s.fq.expected  | /builddir/build/BUILD/samtools-1.23/samtools fastq -s /builddir/build/BUILD/samtools-1.23/test/s.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected | /builddir/build/BUILD/samtools-1.23/samtools fastq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG test/bam2fq/5.1.fq.expected test/bam2fq/5.2.fq.expected | /builddir/build/BUILD/samtools-1.23/samtools fastq -N -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.23/samtools fastq -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG --barcode-tag OX -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.23/samtools fastq --barcode-tag OX -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG -T "" -1 test/bam2fq/6.1.fq.expected -2 test/bam2fq/6.2.fq.expected | /builddir/build/BUILD/samtools-1.23/samtools fastq -N -T RG,BC,QT -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG -T "*" -1 test/bam2fq/7.1.fq.expected -2 test/bam2fq/7.2.fq.expected | /builddir/build/BUILD/samtools-1.23/samtools fastq -N -T RG,BC,QT,MD,ia -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -R rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r ID:rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r '@RG	ID:rgid'
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG test/import/2.interleaved.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG test/import/3.interleaved.fq -i
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG test/import/4.aux.fq -T "*"
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG test/import/4.aux.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG test/import/4.aux.fq -T XZ,XA,AA
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq --barcode-tag OX --quality-tag BZ
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG -U test/bam2fq/UMI.fq.expected
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23/samtools import --no-PG -U --UMI-tag OX test/bam2fq/UMI.fq.expected
.. ok

test_bam2fq:
	Generate BAM file                                           .. ok

	Generate CRAM file                                          .. ok

	1: fastq  (SAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input)                                      [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input)                                    [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.23/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -N -t -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23/test/i.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.23/test/i.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -N -1 /builddir/build/BUILD/samtools-1.23/test/o.fq -2 /builddir/build/BUILD/samtools-1.23/test/o.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fasta  -N -1 /builddir/build/BUILD/samtools-1.23/test/o.fa -2 /builddir/build/BUILD/samtools-1.23/test/o.fa /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -N -o /builddir/build/BUILD/samtools-1.23/test/o.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -N -s /tmp/qToG2ciSPD/bam2fq.discard.s.fq -0 /tmp/qToG2ciSPD/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.23/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.23/test/i2.fq -0 /builddir/build/BUILD/samtools-1.23/test/0.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.014.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -N -T '' /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -N -t -T '*' /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -N -T '*' -d MD:10 /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -N -T '*' -d NM:0 /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -N -T '*' -d ia /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -d NM:13 -d NM:14 /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -D NM:test/dat/bam2fq.NM-D /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -D MD:test/dat/bam2fq.MD-D /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -O --no-sc --no-sc-bkp -T 's0' /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -O --no-sc -T's0' /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -O --no-sc /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq  -O --no-sc --sc-aux s1 -T's0,s1' /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -U test/import/UMI.expected.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -U --UMI-tag RX,OX test/import/UMI-OX.expected.sam
.. ok

test_bam2fq:
	Generate BAM file (2 threads)                               .. ok

	Generate CRAM file (2 threads)                              .. ok

	1: fastq  (SAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input) (2 threads)                          [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input) (2 threads)                        [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.23/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -N -t -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23/test/i.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.23/test/i.fq -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -N -1 /builddir/build/BUILD/samtools-1.23/test/o.fq -2 /builddir/build/BUILD/samtools-1.23/test/o.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fasta -@ 2 -N -1 /builddir/build/BUILD/samtools-1.23/test/o.fa -2 /builddir/build/BUILD/samtools-1.23/test/o.fa /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -N -o /builddir/build/BUILD/samtools-1.23/test/o.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -N -s /tmp/qToG2ciSPD/bam2fq.discard.s.fq -0 /tmp/qToG2ciSPD/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.23/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.23/test/i2.fq -0 /builddir/build/BUILD/samtools-1.23/test/0.fq /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.014.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -N -T '' /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -N -t -T '*' /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -N -T '*' -d MD:10 /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -N -T '*' -d NM:0 /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -N -T '*' -d ia /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -d NM:13 -d NM:14 /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -D NM:test/dat/bam2fq.NM-D /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -D MD:test/dat/bam2fq.MD-D /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -O --no-sc --no-sc-bkp -T 's0' /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -O --no-sc -T's0' /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -O --no-sc /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -@ 2 -O --no-sc --sc-aux s1 -T's0,s1' /builddir/build/BUILD/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -U test/import/UMI.expected.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23/samtools fastq -U --UMI-tag RX,OX test/import/UMI-OX.expected.sam
.. ok

test_depad:
	Generate BAM file                                           .. ok

	depad  (SAM input)                                          .. ok

	depad -s (SAM input)                                        .. ok

	depad -u (SAM input)                                        .. ok

	depad -1 (SAM input)                                        .. ok

	depad  (BAM input)                                          .. ok

	depad -s (BAM input)                                        .. ok

	depad -u (BAM input)                                        .. ok

	depad -1 (BAM input)                                        .. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/1_map_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23/test/stat/2_equal_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/2_equal_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23/test/stat/3_map_cigar_equal_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/3_map_cigar_equal_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23/test/stat/4_X_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/4_X_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/5_insert_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23/test/stat/test.fa -i 0 /builddir/build/BUILD/samtools-1.23/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23/test/stat/7_supp.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/7_supp_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23/test/stat/8_secondary.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/8_secondary_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23/test/stat/10_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -t /builddir/build/BUILD/samtools-1.23/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.23/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -g 4 -t /builddir/build/BUILD/samtools-1.23/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.23/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -g 4 /builddir/build/BUILD/samtools-1.23/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.23/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.23/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.23/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.23/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/13_barcodes_ok.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/13_barcodes_ok_ox_bz.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/13_barcodes_fail_bc_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.23/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/13_barcodes_fail_hyphen.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.23/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23/test/stat/13_barcodes_fail_qt_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.23/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -I s1 /builddir/build/BUILD/samtools-1.23/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -I grp2 /builddir/build/BUILD/samtools-1.23/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -I grp3 /builddir/build/BUILD/samtools-1.23/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -I Sample /builddir/build/BUILD/samtools-1.23/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23/test/mpileup/ce.fa /builddir/build/BUILD/samtools-1.23/test/stat/15.big_del.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23/test/stat/11_target.sam | grep -e"^RFS"
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23/test/stat/11_target.sam -r /builddir/build/BUILD/samtools-1.23/test/stat/test.fa

	ERR: [E::faidx_adjust_position] The sequence "ref1" was not found
Failed to fetch the sequence "ref1"

.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23/test/stat/11_target.sam -r /builddir/build/BUILD/samtools-1.23/test/stat/test1.fa | grep -e"^RFS"
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats --ref-stats --ref-stats-chunk -1 /builddir/build/BUILD/samtools-1.23/test/stat/11_target.sam -r /builddir/build/BUILD/samtools-1.23/test/stat/test1.fa | grep -e"^RFS"
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23/test/stat/11_target.bam -r /builddir/build/BUILD/samtools-1.23/test/stat/test1.fa alpha:10-20 | grep -e"^RFS"
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23/test/stat/11_target.sam -r /builddir/build/BUILD/samtools-1.23/test/stat/test1.fa -t /builddir/build/BUILD/samtools-1.23/test/stat/11.stats.targets  | grep -e"^RFS"
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23/test/stat/11_target.bam -r /builddir/build/BUILD/samtools-1.23/test/stat/test1.fa -t /builddir/build/BUILD/samtools-1.23/test/stat/11.stats.targets ref1 | grep -e"^RFS"
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -s 1 -O sam -b /tmp/9TKGItRENf - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -s 1 -p -c -t PG -O SAM - /tmp/qToG2ciSPD/merge.tag.1.bam /tmp/qToG2ciSPD/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -s 1 -p -c -n -t PG -O SAM - /tmp/qToG2ciSPD/merge.tag.3.bam /tmp/qToG2ciSPD/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge --no-PG -O SAM - /builddir/build/BUILD/samtools-1.23/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.23/test/merge/merge.bed - /tmp/qToG2ciSPD/merge.bed.1.bam /tmp/qToG2ciSPD/merge.bed.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge --no-PG -r -O SAM - /builddir/build/BUILD/samtools-1.23/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge --no-PG -O SAM --template-coordinate - /builddir/build/BUILD/samtools-1.23/test/merge/test_template_coordinate.1.sam /builddir/build/BUILD/samtools-1.23/test/merge/test_template_coordinate.2.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 -s 1 -O sam -b /tmp/XeHYJr7Ywh - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 -s 1 -p -c -t PG -O SAM - /tmp/qToG2ciSPD/merge.tag.1.bam /tmp/qToG2ciSPD/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 -s 1 -p -c -n -t PG -O SAM - /tmp/qToG2ciSPD/merge.tag.3.bam /tmp/qToG2ciSPD/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 --no-PG -O SAM - /builddir/build/BUILD/samtools-1.23/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.23/test/merge/merge.bed - /tmp/qToG2ciSPD/merge.bed.1.bam /tmp/qToG2ciSPD/merge.bed.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 --no-PG -r -O SAM - /builddir/build/BUILD/samtools-1.23/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23/samtools merge -@ 2 --no-PG -O SAM --template-coordinate - /builddir/build/BUILD/samtools-1.23/test/merge/test_template_coordinate.1.sam /builddir/build/BUILD/samtools-1.23/test/merge/test_template_coordinate.2.sam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /tmp/qToG2ciSPD/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -f /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /tmp/qToG2ciSPD/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -o /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /tmp/qToG2ciSPD/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -n -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -N -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -n -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/sort_name_input_1.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -t RG -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -n -t RG -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -t AS -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -t FI -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort --template-coordinate -m 10M /builddir/build/BUILD/samtools-1.23/test/sort/template-coordinate.sort.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23/samtools sort -m 10M -M -K10 -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23/samtools sort -m 10M -M -K10 -I /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.ref.fa -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23/samtools sort -m 10M -MH -K10 -I /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.ref.fa -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /tmp/qToG2ciSPD/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -f /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /tmp/qToG2ciSPD/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -o /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam /tmp/qToG2ciSPD/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -n -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -N -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_b.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -n -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/sort_name_input_1.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -t RG -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -n -t RG -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -t AS -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -t FI -m 10M /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 --template-coordinate -m 10M /builddir/build/BUILD/samtools-1.23/test/sort/template-coordinate.sort.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -m 10M -M -K10 -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -m 10M -M -K10 -I /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.ref.fa -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23/samtools sort -@ 2 -m 10M -MH -K10 -I /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.ref.fa -O SAM -o -
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate --output-fmt=sam -O /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate -o /builddir/build/BUILD/samtools-1.23/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate -o /builddir/build/BUILD/samtools-1.23/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.23/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate --output-fmt=sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.23/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate --output-fmt=sam -f /builddir/build/BUILD/samtools-1.23/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.23/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.23/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.23/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate -@ 2 --output-fmt=sam -O /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.23/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.23/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.23/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate -@ 2 --output-fmt=sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.23/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate -@ 2 --output-fmt=sam -f /builddir/build/BUILD/samtools-1.23/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.23/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23/samtools collate -@ 2 --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.23/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.23/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.23/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.23/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/sanitize.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_ok+.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_ok-.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_draft.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_not_updated.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_not_updated_noML.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_not_updated_noMN.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_bad_MN.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_MN_only.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_ML_only.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_ML_wrong_len.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_noseq.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_bounds.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.23/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.23/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/sanitize.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_ok+.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_ok-.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_draft.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_not_updated.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_not_updated_noML.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_not_updated_noMN.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_bad_MN.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_MN_only.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_ML_only.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_ML_wrong_len.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_noseq.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23/test/fixmate/mod_bounds.sam -
.. ok

/builddir/build/BUILD/samtools-1.23/samtools calmd -uAr /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.ref.fa
.. ok

/builddir/build/BUILD/samtools-1.23/samtools calmd -@ 2 -uAr /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.ref.fa
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.23/samtools idxstats /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.23/samtools idxstats /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.cram
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.23/samtools idxstats /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.sam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23/test/quickcheck/1.quickcheck.badeof.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23/test/quickcheck/2.quickcheck.badheader.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23/test/quickcheck/3.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23/test/quickcheck/4.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23/test/quickcheck/5.quickcheck.scramble30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23/test/quickcheck/6.quickcheck.cram21.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23/test/quickcheck/7.quickcheck.cram30.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23/test/quickcheck/8.quickcheck.cram21.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23/test/quickcheck/9.quickcheck.cram30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23/test/quickcheck/10.quickcheck.notargets.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck -v  /builddir/build/BUILD/samtools-1.23/test/quickcheck/1.quickcheck.badeof.bam /builddir/build/BUILD/samtools-1.23/test/quickcheck/2.quickcheck.badheader.bam /builddir/build/BUILD/samtools-1.23/test/quickcheck/3.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.23/test/quickcheck/4.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.23/test/quickcheck/5.quickcheck.scramble30.truncated.cram /builddir/build/BUILD/samtools-1.23/test/quickcheck/6.quickcheck.cram21.ok.cram /builddir/build/BUILD/samtools-1.23/test/quickcheck/7.quickcheck.cram30.ok.cram /builddir/build/BUILD/samtools-1.23/test/quickcheck/8.quickcheck.cram21.truncated.cram /builddir/build/BUILD/samtools-1.23/test/quickcheck/9.quickcheck.cram30.truncated.cram /builddir/build/BUILD/samtools-1.23/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23/samtools quickcheck -uv /builddir/build/BUILD/samtools-1.23/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23/samtools reheader /builddir/build/BUILD/samtools-1.23/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.23/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.23/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23/samtools reheader /builddir/build/BUILD/samtools-1.23/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.23/test/dat/view.001.tmp.v21.cram | /builddir/build/BUILD/samtools-1.23/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23/samtools reheader /builddir/build/BUILD/samtools-1.23/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.23/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.23/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23/samtools reheader --in-place /builddir/build/BUILD/samtools-1.23/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.23/test/dat/view.001.tmp.v21.cram && /builddir/build/BUILD/samtools-1.23/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.23/test/dat/view.001.tmp.v21.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23/samtools reheader --in-place /builddir/build/BUILD/samtools-1.23/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.23/test/dat/view.001.tmp.v30.cram && /builddir/build/BUILD/samtools-1.23/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.23/test/dat/view.001.tmp.v30.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.23/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.23/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.23/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.23/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -O sam -m orphan_only /builddir/build/BUILD/samtools-1.23/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -O sam -R '1#9' /builddir/build/BUILD/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.23/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.23/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -@ 2 -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -@ 2 -O sam -m orphan_only /builddir/build/BUILD/samtools-1.23/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -@ 2 -O sam -R '1#9' /builddir/build/BUILD/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -@ 2 -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.23/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -@ 2 -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -@ 2 -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.23/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23/samtools addreplacerg -@ 2 -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/1_name_sort.sam -

	ERR: samtools markdup: error, queryname sorted, must be sorted by coordinate.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/2_bad_order.sam -

	ERR: samtools markdup: error, not in coordinate sorted order.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/3_missing_mc.sam -

	ERR: samtools markdup: error, no MC tag. Please run samtools fixmate on file first.

samtools markdup: error, unable to assign pair hash key.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/4_missing_ms.sam -

	ERR: samtools markdup: error, no ms score tag. Please run samtools fixmate on file first.

samtools markdup: error, no ms score tag. Please run samtools fixmate on file first.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -O sam -r --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.23/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.23/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/12_optical_chain_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -d 100 --mode s -t --barcode-tag BX -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/13_optical_barcode_tag.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -d 100 --mode s -t --barcode-name -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/14_optical_barcode_name.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]+):([0-9]+)' --coords-order xy -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/15_optical_barcode_rgx_name.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]{4})([0-9]{4})' --coords-order xy -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/16_optical_barcode_rgx_name_test_2.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -d 100 --mode s -t --use-read-groups -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/17_read_group.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup --mode t -t -O sam --no-PG --duplicate-count --barcode-tag BC -S /builddir/build/BUILD/samtools-1.23/test/markdup/18_primary_duplicate_count.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/1_name_sort.sam -

	ERR: samtools markdup: error, queryname sorted, must be sorted by coordinate.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/2_bad_order.sam -

	ERR: samtools markdup: error, not in coordinate sorted order.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/3_missing_mc.sam -

	ERR: samtools markdup: error, no MC tag. Please run samtools fixmate on file first.

samtools markdup: error, unable to assign pair hash key.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/4_missing_ms.sam -

	ERR: samtools markdup: error, no ms score tag. Please run samtools fixmate on file first.

samtools markdup: error, no ms score tag. Please run samtools fixmate on file first.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -O sam -r --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.23/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.23/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/12_optical_chain_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-tag BX -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/13_optical_barcode_tag.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-name -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/14_optical_barcode_name.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]+):([0-9]+)' --coords-order xy -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/15_optical_barcode_rgx_name.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]{4})([0-9]{4})' --coords-order xy -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/16_optical_barcode_rgx_name_test_2.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 -d 100 --mode s -t --use-read-groups -O sam --no-PG /builddir/build/BUILD/samtools-1.23/test/markdup/17_read_group.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23/samtools markdup -@ 2 --mode t -t -O sam --no-PG --duplicate-count --barcode-tag BC -S /builddir/build/BUILD/samtools-1.23/test/markdup/18_primary_duplicate_count.sam -
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.23/samtools bedcov /builddir/build/BUILD/samtools-1.23/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.23/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.23/samtools bedcov -j /builddir/build/BUILD/samtools-1.23/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.23/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.23/samtools bedcov -g512 -G2048 /builddir/build/BUILD/samtools-1.23/test/bedcov/bedcov_gG.bed /builddir/build/BUILD/samtools-1.23/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.23/samtools bedcov -c /builddir/build/BUILD/samtools-1.23/test/bedcov/bedcov_gG.bed /builddir/build/BUILD/samtools-1.23/test/bedcov/bedcov.bam
.. ok

.. ok

.. ok

.. ok

.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  --output-fmt sam -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%#.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  --output-fmt sam -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -p 5 -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%#.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  --output-fmt sam -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  --output-fmt sam -d RG -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  --output-fmt sam -d an -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  --output-fmt sam -d an -M 3 -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  --output-fmt sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -d nn -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.unk.sam  /builddir/build/BUILD/samtools-1.23/test/split/split_d_nn.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  --output-fmt sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -p 4 -d nn -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.0unk.sam  /builddir/build/BUILD/samtools-1.23/test/split/split_d_nn.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools sort  -t nn /builddir/build/BUILD/samtools-1.23/test/split/split_d_nn.sam |
                /builddir/build/BUILD/samtools-1.23/samtools split  --output-fmt sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -p 4 -d nn -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.0unk.sam - 
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%#.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -p 5 -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%#.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  -@ 2 --output-fmt sam -d RG -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  -@ 2 --output-fmt sam -d an -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  -@ 2 --output-fmt sam -d an -M 3 -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  -@ 2 --output-fmt sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -d nn -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.unk.sam  /builddir/build/BUILD/samtools-1.23/test/split/split_d_nn.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools split  -@ 2 --output-fmt sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -p 4 -d nn -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.0unk.sam  /builddir/build/BUILD/samtools-1.23/test/split/split_d_nn.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23/samtools sort  -@ 2 -t nn /builddir/build/BUILD/samtools-1.23/test/split/split_d_nn.sam |
                /builddir/build/BUILD/samtools-1.23/samtools split  -@ 2 --output-fmt sam -f /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -p 4 -d nn -u /builddir/build/BUILD/samtools-1.23/test/split/split.tmp.d_nn.0unk.sam - 
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23/samtools view -h --no-PG /tmp/qToG2ciSPD/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23/samtools view -h --no-PG /tmp/qToG2ciSPD/longref.sam.gz CHROMOSOME_I:10000000114-10000000168
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23/samtools view -h --no-PG -L /builddir/build/BUILD/samtools-1.23/test/large_pos/test.bed /tmp/qToG2ciSPD/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23/samtools sort -O sam --no-PG -m 10M /builddir/build/BUILD/samtools-1.23/test/large_pos/longref_name.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23/samtools merge -O sam --no-PG - /builddir/build/BUILD/samtools-1.23/test/large_pos/longref.sam /builddir/build/BUILD/samtools-1.23/test/large_pos/longref2.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23/samtools depth /builddir/build/BUILD/samtools-1.23/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23/samtools depth -b /builddir/build/BUILD/samtools-1.23/test/large_pos/test.bed /builddir/build/BUILD/samtools-1.23/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23/samtools tview -d T -p CHROMOSOME_I:10000000000 /tmp/qToG2ciSPD/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23/samtools sort    -O sam --no-PG -n -m 10M test/large_pos/longref3.sam |
                     /builddir/build/BUILD/samtools-1.23/samtools fixmate -O sam --no-PG - - |
                     /builddir/build/BUILD/samtools-1.23/samtools sort    -O sam --no-PG -m 10M
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --primer-counts /builddir/build/BUILD/samtools-1.23/test/ampliconclip/primer_counts.tsv --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --primer-counts /builddir/build/BUILD/samtools-1.23/test/ampliconclip/primer_counts.tsv -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip --no-PG --output-fmt=sam --keep-tag --primer-counts /builddir/build/BUILD/samtools-1.23/test/ampliconclip/primer_counts.tsv -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/3_multi_ref_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip --no-PG --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test2.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/4_total_hc_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --primer-counts /builddir/build/BUILD/samtools-1.23/test/ampliconclip/primer_counts.tsv --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --primer-counts /builddir/build/BUILD/samtools-1.23/test/ampliconclip/primer_counts.tsv -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam --keep-tag --primer-counts /builddir/build/BUILD/samtools-1.23/test/ampliconclip/primer_counts.tsv -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/3_multi_ref_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test2.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/4_total_hc_data.sam
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconstats -@ 2 -S -t 50 -d 1,20,100 /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_hard_clipped.expected.sam /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_soft_clipped.expected.sam /builddir/build/BUILD/samtools-1.23/test/ampliconclip/1_soft_clipped_strand.expected.sam /builddir/build/BUILD/samtools-1.23/test/ampliconclip/2_both_clipped.expected.sam | grep -E -v 'Samtools version|Command line'
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconstats -@ 2 -c 0 /builddir/build/BUILD/samtools-1.23/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.23/test/ampliconstats/mixed_clipped.sam | grep -E -v 'Samtools version|Command line'
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.23/samtools ampliconstats -@ 2 -c 0 /builddir/build/BUILD/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23/test/ampliconstats/mixed_clipped.sam | grep -E -v 'Samtools version|Command line'
.. ok

test_reset:
	cat /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam | /builddir/build/BUILD/samtools-1.23/samtools reset --dupflag | /builddir/build/BUILD/samtools-1.23/samtools view
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag < /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam | /builddir/build/BUILD/samtools-1.23/samtools view
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam | /builddir/build/BUILD/samtools-1.23/samtools view
.. ok

test_reset:
	cat /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam | /builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag -o /builddir/build/BUILD/samtools-1.23/test/reset/output.tmp.sam
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag -o /builddir/build/BUILD/samtools-1.23/test/reset/output.tmp.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.bam
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag -o /builddir/build/BUILD/samtools-1.23/test/reset/output.tmp.sam /builddir/build/BUILD/samtools-1.23/test/dat/test_input_1_a.cram
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam -o /builddir/build/BUILD/samtools-1.23/test/reset/output.tmp.sam; grep /builddir/build/BUILD/samtools-1.23/test/reset/output.tmp.sam -e"@PG	ID:samtools	PN:samtools" | wc -l | sed 's/ //g'
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag --reject-PG sam_to_fixed_bam /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam -o /builddir/build/BUILD/samtools-1.23/test/reset/output.tmp.sam; grep /builddir/build/BUILD/samtools-1.23/test/reset/output.tmp.sam -e"@PG	ID:" | wc -l | sed 's/ //g'
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index --no-PG /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam -o /builddir/build/BUILD/samtools-1.23/test/reset/output.tmp.sam; grep /builddir/build/BUILD/samtools-1.23/test/reset/output.tmp.sam -e"@PG"
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam --no-RG -o /builddir/build/BUILD/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam --no-RG --keep-tag RG -o /builddir/build/BUILD/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam --no-RG --keep-tag X0,MD -o /builddir/build/BUILD/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam --no-RG --remove-tag X0,X1,MD --keep-tag X0,MD -o /builddir/build/BUILD/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam --no-RG --remove-tag X0,X1,MD -o /builddir/build/BUILD/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam --no-RG -x X0,X1,MD -o /builddir/build/BUILD/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23/test/dat/mpileup.1.sam --no-RG --remove-tag ^X0,MD --keep-tag X1 -o /builddir/build/BUILD/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23/test/reset/seq.sam -o /builddir/build/BUILD/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23/samtools reset /builddir/build/BUILD/samtools-1.23/test/reset/seq.sam -o /builddir/build/BUILD/samtools-1.23/test/reset/output
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum /builddir/build/BUILD/samtools-1.23/test/checksum/chk1.bam | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum /builddir/build/BUILD/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -a /builddir/build/BUILD/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -qv /builddir/build/BUILD/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -qv -a /builddir/build/BUILD/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -m /builddir/build/BUILD/samtools-1.23/test/checksum/chk1-ERR*.tmp.chk | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -m /builddir/build/BUILD/samtools-1.23/test/checksum/chk2-*.tmp.chk | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -@ 2 /builddir/build/BUILD/samtools-1.23/test/checksum/chk1.bam | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -@ 2 /builddir/build/BUILD/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -@ 2 -a /builddir/build/BUILD/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -@ 2 -qv /builddir/build/BUILD/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -@ 2 -qv -a /builddir/build/BUILD/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -@ 2 -m /builddir/build/BUILD/samtools-1.23/test/checksum/chk1-ERR*.tmp.chk | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23/samtools checksum -@ 2 -m /builddir/build/BUILD/samtools-1.23/test/checksum/chk2-*.tmp.chk | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23/samtools coverage /builddir/build/BUILD/samtools-1.23/test/dat/sample.sam
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23/samtools coverage --min-depth 1 /builddir/build/BUILD/samtools-1.23/test/dat/sample.sam
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23/samtools coverage --min-depth 2 /builddir/build/BUILD/samtools-1.23/test/dat/sample.sam
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23/samtools coverage --min-depth 2 -Q 8 -q 45 /builddir/build/BUILD/samtools-1.23/test/dat/sample.sam
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23/samtools coverage --min-depth 1 /builddir/build/BUILD/samtools-1.23/test/dat/sample.sam /tmp/qToG2ciSPD/sample1.sam
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23/samtools coverage --min-depth 4 /builddir/build/BUILD/samtools-1.23/test/dat/sample.sam /tmp/qToG2ciSPD/sample1.sam
.. ok


Number of tests:
    total            .. 998
    passed           .. 966
    failed           .. 0
    expected failure .. 32
    unexpected pass  .. 0

test/merge/test_bam_translate test/merge/test_bam_translate.tmp
test/merge/test_rtrans_build
test/merge/test_trans_tbl_init
cd test/mpileup && AWK="gawk" ../regression.sh mpileup.reg

=== Testing mpileup.reg regressions ===
[W::cram_encode_aux] Missing @RG header for RG "ERR162872"
[W::cram_encode_aux] Missing @RG header for RG "ERR162872"
[W::cram_encode_aux] Missing @RG header for RG "ERR162872"
[W::cram_encode_aux] Missing @RG header for RG "ERR162872"

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools mpileup -ABQ0 -a -l xx.bed3 xx#depth3.bam

Expected   passes:   120
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/mpileup && AWK="gawk" ../regression.sh depth.reg

=== Testing depth.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools depth -a -b xx.bed3 xx#depth3.bam

Expected   passes:   55
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/mpileup && AWK="gawk" ../regression.sh cram-size.reg

=== Testing cram-size.reg regressions ===

Expected   passes:   5
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
cd test/consensus && AWK="gawk" ../regression.sh consensus.reg

=== Testing consensus.reg regressions ===

Expected   passes:   77
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
cd test/consensus && AWK="gawk" PARAM="-@4 -Z4" ../regression.sh consensus.reg

=== Testing consensus.reg regressions ===

Expected   passes:   77
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
cd test/cram_size && AWK="gawk" ../regression.sh cram_size.reg

=== Testing cram_size.reg regressions ===

Expected   passes:   3
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: samtools-1.23-1.el9.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.YyWZLb
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.23
+ DOCDIR=/builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/share/doc/samtools
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/share/doc/samtools
+ cp -pr AUTHORS /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/share/doc/samtools
+ cp -pr ChangeLog.old /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/share/doc/samtools
+ cp -pr NEWS.md /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/share/doc/samtools
+ cp -pr examples/ /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/share/doc/samtools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ck57WG
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.23
+ LICENSEDIR=/builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/share/licenses/samtools
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/share/licenses/samtools
+ cp -pr LICENSE /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le/usr/share/licenses/samtools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: samtools = 1.23-1.el9 samtools(ppc-64) = 1.23-1.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libhts.so.3()(64bit) libhts.so.3(HTSLIB_1.0)(64bit) libhts.so.3(HTSLIB_1.1)(64bit) libhts.so.3(HTSLIB_1.10)(64bit) libhts.so.3(HTSLIB_1.11)(64bit) libhts.so.3(HTSLIB_1.12)(64bit) libhts.so.3(HTSLIB_1.14)(64bit) libhts.so.3(HTSLIB_1.15)(64bit) libhts.so.3(HTSLIB_1.16)(64bit) libhts.so.3(HTSLIB_1.17)(64bit) libhts.so.3(HTSLIB_1.18)(64bit) libhts.so.3(HTSLIB_1.2.1)(64bit) libhts.so.3(HTSLIB_1.21)(64bit) libhts.so.3(HTSLIB_1.22)(64bit) libhts.so.3(HTSLIB_1.23)(64bit) libhts.so.3(HTSLIB_1.3)(64bit) libhts.so.3(HTSLIB_1.4)(64bit) libhts.so.3(HTSLIB_1.5)(64bit) libhts.so.3(HTSLIB_1.6)(64bit) libhts.so.3(HTSLIB_1.7)(64bit) libhts.so.3(HTSLIB_1.9)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libncursesw.so.6()(64bit) libtinfo.so.6()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: samtools-debugsource-1.23-1.el9.ppc64le
Provides: samtools-debugsource = 1.23-1.el9 samtools-debugsource(ppc-64) = 1.23-1.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: samtools-debuginfo-1.23-1.el9.ppc64le
Provides: debuginfo(build-id) = 1dd191392e4487f38916b1139a74af60d1815b6e debuginfo(build-id) = 3bf5d079529955c92fdd4b9ecbb69ae90081d8b4 debuginfo(build-id) = 3f4d5ff8942aa7a944d0f440370de9bc6a676809 debuginfo(build-id) = 75c0047c80c09ac76499e850c8c6f476b76615e5 debuginfo(build-id) = b76e725f6cecf883bc3dc5f731ff0ff277834d0e debuginfo(build-id) = d68bc16ed0d88f300a1c14d76265d8542212f116 debuginfo(build-id) = e344035db297705c01317089fe8a11f845b3f87a samtools-debuginfo = 1.23-1.el9 samtools-debuginfo(ppc-64) = 1.23-1.el9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: samtools-debugsource(ppc-64) = 1.23-1.el9
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le
Wrote: /builddir/build/RPMS/samtools-1.23-1.el9.ppc64le.rpm
Wrote: /builddir/build/RPMS/samtools-debugsource-1.23-1.el9.ppc64le.rpm
Wrote: /builddir/build/RPMS/samtools-debuginfo-1.23-1.el9.ppc64le.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.MBe91h
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.23
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/samtools-1.23-1.el9.ppc64le
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild samtools-1.23-1.el9.src.rpm
Finish: build phase for samtools-1.23-1.el9.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/rhel+epel-9-ppc64le-1769501919.064289/root/var/log/dnf.rpm.log
/var/lib/mock/rhel+epel-9-ppc64le-1769501919.064289/root/var/log/dnf.librepo.log
/var/lib/mock/rhel+epel-9-ppc64le-1769501919.064289/root/var/log/dnf.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/samtools-1.23-1.el9.src.rpm) Config(child) 3 minutes 24 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "samtools",
            "epoch": null,
            "version": "1.23",
            "release": "1.el9",
            "arch": "src"
        },
        {
            "name": "samtools",
            "epoch": null,
            "version": "1.23",
            "release": "1.el9",
            "arch": "ppc64le"
        },
        {
            "name": "samtools-debuginfo",
            "epoch": null,
            "version": "1.23",
            "release": "1.el9",
            "arch": "ppc64le"
        },
        {
            "name": "samtools-debugsource",
            "epoch": null,
            "version": "1.23",
            "release": "1.el9",
            "arch": "ppc64le"
        }
    ]
}
RPMResults finished