Warning: Permanently added '18.234.111.209' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10066103-fedora-43-aarch64 --chroot fedora-43-aarch64


Version: 1.6
PID: 23334
Logging PID: 23336
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'build_id': 10066103,
 'buildroot_pkgs': [],
 'chroot': 'fedora-43-aarch64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'ef1e765a1035b0f2dd26cbdff692764fa901e898',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ron/bioinformatics/bcftools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bcftools',
 'package_version': '1.23-1',
 'project_dirname': 'bioinformatics',
 'project_name': 'bioinformatics',
 'project_owner': 'ron',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ron/bioinformatics/fedora-43-aarch64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'ron/bioinformatics--ron',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'ron',
 'tags': [],
 'task_id': '10066103-fedora-43-aarch64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ron/bioinformatics/bcftools /var/lib/copr-rpmbuild/workspace/workdir-4bbhvm4t/bcftools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ron/bioinformatics/bcftools', '/var/lib/copr-rpmbuild/workspace/workdir-4bbhvm4t/bcftools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-4bbhvm4t/bcftools'...

Running: git checkout ef1e765a1035b0f2dd26cbdff692764fa901e898 --

cmd: ['git', 'checkout', 'ef1e765a1035b0f2dd26cbdff692764fa901e898', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-4bbhvm4t/bcftools
rc: 0
stdout: 
stderr: Note: switching to 'ef1e765a1035b0f2dd26cbdff692764fa901e898'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at ef1e765 automatic import of bcftools

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-4bbhvm4t/bcftools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading bcftools-1.23.tar.bz2
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o bcftools-1.23.tar.bz2 --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ron/bioinformatics/bcftools/bcftools-1.23.tar.bz2/md5/a33e895594ff53ed68eded2e0b742540/bcftools-1.23.tar.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 7942k  100 7942k    0     0   254M      0 --:--:-- --:--:-- --:--:--  258M
INFO: Reading stdout from command: md5sum bcftools-1.23.tar.bz2

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-4bbhvm4t/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-4bbhvm4t/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1769501916.045769 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.6 starting (python version = 3.14.2, NVR = mock-6.6-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-4bbhvm4t/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-4bbhvm4t/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1769501916.045769 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-4bbhvm4t/bcftools/bcftools.spec)  Config(fedora-43-aarch64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.6
INFO: Mock Version: 6.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-bootstrap-1769501916.045769/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:43
INFO: Pulling image: registry.fedoraproject.org/fedora:43
INFO: Tagging container image as mock-bootstrap-f6a8d98d-112f-4c4c-947d-efdf5eefb19f
INFO: Checking that 0408e3a235e023749ec630188259e505268f3bca79fd5092e87ca814167ade54 image matches host's architecture
INFO: Copy content of container 0408e3a235e023749ec630188259e505268f3bca79fd5092e87ca814167ade54 to /var/lib/mock/fedora-43-aarch64-bootstrap-1769501916.045769/root
INFO: mounting 0408e3a235e023749ec630188259e505268f3bca79fd5092e87ca814167ade54 with podman image mount
INFO: image 0408e3a235e023749ec630188259e505268f3bca79fd5092e87ca814167ade54 as /var/lib/containers/storage/overlay/317d1fcd34cd3938caa94d134963e97c9ec799d4cdf26c8ec19da18b75d4f032/merged
INFO: umounting image 0408e3a235e023749ec630188259e505268f3bca79fd5092e87ca814167ade54 (/var/lib/containers/storage/overlay/317d1fcd34cd3938caa94d134963e97c9ec799d4cdf26c8ec19da18b75d4f032/merged) with podman image umount
INFO: Removing image mock-bootstrap-f6a8d98d-112f-4c4c-947d-efdf5eefb19f
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-1769501916.045769/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc43.aarch64
  rpm-sequoia-1.10.0-1.fc43.aarch64
  dnf5-5.2.17.0-2.fc43.aarch64
  dnf5-plugins-5.2.17.0-2.fc43.aarch64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 Copr repository                        100% |  20.7 KiB/s |   5.1 KiB |  00m00s
 updates                                100% |  11.6 MiB/s |   9.5 MiB |  00m01s
 fedora                                 100% |  27.4 MiB/s |  34.3 MiB |  00m01s
Repositories loaded.
Package                            Arch    Version                     Repository      Size
Installing group/module packages:
 bash                              aarch64 5.3.0-2.fc43                fedora       8.4 MiB
 bzip2                             aarch64 1.0.8-21.fc43               fedora     171.3 KiB
 coreutils                         aarch64 9.7-7.fc43                  updates      8.2 MiB
 cpio                              aarch64 2.15-6.fc43                 fedora       1.1 MiB
 diffutils                         aarch64 3.12-3.fc43                 fedora       1.6 MiB
 fedora-release-common             noarch  43-25                       fedora      20.6 KiB
 findutils                         aarch64 1:4.10.0-6.fc43             fedora       1.9 MiB
 gawk                              aarch64 5.3.2-2.fc43                fedora       2.6 MiB
 glibc-minimal-langpack            aarch64 2.42-9.fc43                 updates      0.0   B
 grep                              aarch64 3.12-2.fc43                 fedora       1.0 MiB
 gzip                              aarch64 1.13-4.fc43                 fedora     424.7 KiB
 info                              aarch64 7.2-6.fc43                  fedora     421.6 KiB
 patch                             aarch64 2.8-2.fc43                  fedora     262.5 KiB
 redhat-rpm-config                 noarch  343-11.fc43                 fedora     182.9 KiB
 rpm-build                         aarch64 6.0.1-1.fc43                updates    599.0 KiB
 sed                               aarch64 4.9-5.fc43                  fedora     873.2 KiB
 shadow-utils                      aarch64 2:4.18.0-3.fc43             fedora       4.4 MiB
 tar                               aarch64 2:1.35-6.fc43               fedora       3.0 MiB
 unzip                             aarch64 6.0-67.fc43                 fedora     470.2 KiB
 util-linux                        aarch64 2.41.3-7.fc43               updates      6.8 MiB
 which                             aarch64 2.23-3.fc43                 fedora     123.4 KiB
 xz                                aarch64 1:5.8.1-4.fc43              updates      1.4 MiB
Installing dependencies:
 add-determinism                   aarch64 0.6.0-2.fc43                fedora       2.1 MiB
 alternatives                      aarch64 1.33-3.fc43                 updates     90.2 KiB
 ansible-srpm-macros               noarch  1-18.1.fc43                 fedora      35.7 KiB
 audit-libs                        aarch64 4.1.2-2.fc43                updates    486.9 KiB
 binutils                          aarch64 2.45.1-4.fc43               updates     31.0 MiB
 build-reproducibility-srpm-macros noarch  0.6.0-2.fc43                fedora     735.0   B
 bzip2-libs                        aarch64 1.0.8-21.fc43               fedora      72.6 KiB
 ca-certificates                   noarch  2025.2.80_v9.0.304-1.1.fc43 fedora       2.7 MiB
 coreutils-common                  aarch64 9.7-7.fc43                  updates     11.3 MiB
 crypto-policies                   noarch  20251125-1.git63291f8.fc43  updates    147.1 KiB
 curl                              aarch64 8.15.0-5.fc43               updates    457.6 KiB
 cyrus-sasl-lib                    aarch64 2.1.28-33.fc43              fedora       2.4 MiB
 debugedit                         aarch64 5.2-3.fc43                  fedora     317.9 KiB
 dwz                               aarch64 0.16-2.fc43                 fedora     322.6 KiB
 ed                                aarch64 1.22.2-1.fc43               fedora     156.0 KiB
 efi-srpm-macros                   noarch  6-4.fc43                    fedora      40.1 KiB
 elfutils                          aarch64 0.194-1.fc43                updates      3.2 MiB
 elfutils-debuginfod-client        aarch64 0.194-1.fc43                updates    144.0 KiB
 elfutils-default-yama-scope       noarch  0.194-1.fc43                updates      1.8 KiB
 elfutils-libelf                   aarch64 0.194-1.fc43                updates      1.1 MiB
 elfutils-libs                     aarch64 0.194-1.fc43                updates    746.7 KiB
 fedora-gpg-keys                   noarch  43-1                        fedora     131.2 KiB
 fedora-release                    noarch  43-25                       fedora       0.0   B
 fedora-release-identity-basic     noarch  43-25                       fedora     631.0   B
 fedora-repos                      noarch  43-1                        fedora       4.9 KiB
 file                              aarch64 5.46-8.fc43                 fedora     140.2 KiB
 file-libs                         aarch64 5.46-8.fc43                 fedora      11.9 MiB
 filesystem                        aarch64 3.18-50.fc43                fedora     112.0   B
 filesystem-srpm-macros            noarch  3.18-50.fc43                fedora      38.2 KiB
 fonts-srpm-macros                 noarch  1:2.0.5-23.fc43             fedora      55.8 KiB
 forge-srpm-macros                 noarch  0.4.0-3.fc43                fedora      38.9 KiB
 fpc-srpm-macros                   noarch  1.3-15.fc43                 fedora     144.0   B
 gap-srpm-macros                   noarch  2-1.fc43                    fedora       2.1 KiB
 gdb-minimal                       aarch64 17.1-1.fc43                 updates     13.4 MiB
 gdbm-libs                         aarch64 1:1.23-10.fc43              fedora     233.9 KiB
 ghc-srpm-macros                   noarch  1.9.2-3.fc43                fedora     779.0   B
 glibc                             aarch64 2.42-9.fc43                 updates      6.3 MiB
 glibc-common                      aarch64 2.42-9.fc43                 updates      1.3 MiB
 glibc-gconv-extra                 aarch64 2.42-9.fc43                 updates     18.6 MiB
 gmp                               aarch64 1:6.3.0-4.fc43              fedora     657.9 KiB
 gnat-srpm-macros                  noarch  7-1.fc43                    updates      1.0 KiB
 gnulib-l10n                       noarch  20241231-1.fc43             fedora     655.0 KiB
 gnupg2                            aarch64 2.4.9-4.fc43                updates      6.5 MiB
 gnupg2-dirmngr                    aarch64 2.4.9-4.fc43                updates    646.4 KiB
 gnupg2-gpg-agent                  aarch64 2.4.9-4.fc43                updates    847.3 KiB
 gnupg2-gpgconf                    aarch64 2.4.9-4.fc43                updates    321.9 KiB
 gnupg2-keyboxd                    aarch64 2.4.9-4.fc43                updates    233.3 KiB
 gnupg2-verify                     aarch64 2.4.9-4.fc43                updates    364.4 KiB
 gnutls                            aarch64 3.8.11-5.fc43               updates      3.6 MiB
 go-srpm-macros                    noarch  3.8.0-1.fc43                fedora      61.9 KiB
 gpgverify                         noarch  2.2-3.fc43                  fedora       8.7 KiB
 ima-evm-utils-libs                aarch64 1.6.2-6.fc43                fedora      92.7 KiB
 jansson                           aarch64 2.14-3.fc43                 fedora      93.1 KiB
 java-srpm-macros                  noarch  1-7.fc43                    fedora     870.0   B
 json-c                            aarch64 0.18-7.fc43                 fedora     138.7 KiB
 kernel-srpm-macros                noarch  1.0-27.fc43                 fedora       1.9 KiB
 keyutils-libs                     aarch64 1.6.3-6.fc43                fedora      98.3 KiB
 krb5-libs                         aarch64 1.21.3-7.fc43               fedora       2.5 MiB
 libacl                            aarch64 2.3.2-4.fc43                fedora      68.0 KiB
 libarchive                        aarch64 3.8.4-1.fc43                updates    975.3 KiB
 libassuan                         aarch64 2.5.7-4.fc43                fedora     215.8 KiB
 libattr                           aarch64 2.5.2-6.fc43                fedora      68.5 KiB
 libblkid                          aarch64 2.41.3-7.fc43               updates    290.5 KiB
 libbrotli                         aarch64 1.2.0-1.fc43                updates    909.5 KiB
 libcap                            aarch64 2.76-3.fc43                 fedora     508.8 KiB
 libcap-ng                         aarch64 0.8.5-8.fc43                fedora     160.9 KiB
 libcom_err                        aarch64 1.47.3-2.fc43               fedora     111.2 KiB
 libcurl                           aarch64 8.15.0-5.fc43               updates    915.1 KiB
 libeconf                          aarch64 0.7.9-2.fc43                fedora      81.0 KiB
 libevent                          aarch64 2.1.12-16.fc43              fedora       1.1 MiB
 libfdisk                          aarch64 2.41.3-7.fc43               updates    418.9 KiB
 libffi                            aarch64 3.5.2-1.fc43                updates    155.9 KiB
 libfsverity                       aarch64 1.6-3.fc43                  fedora      68.5 KiB
 libgcc                            aarch64 15.2.1-5.fc43               updates    222.2 KiB
 libgcrypt                         aarch64 1.11.1-3.fc43               updates      1.2 MiB
 libgomp                           aarch64 15.2.1-5.fc43               updates    517.1 KiB
 libgpg-error                      aarch64 1.55-2.fc43                 fedora     971.3 KiB
 libidn2                           aarch64 2.3.8-2.fc43                fedora     560.6 KiB
 libksba                           aarch64 1.6.7-4.fc43                fedora     398.4 KiB
 liblastlog2                       aarch64 2.41.3-7.fc43               updates    138.0 KiB
 libmount                          aarch64 2.41.3-7.fc43               updates    420.2 KiB
 libnghttp2                        aarch64 1.66.0-2.fc43               fedora     197.9 KiB
 libpkgconf                        aarch64 2.3.0-3.fc43                fedora     134.0 KiB
 libpsl                            aarch64 0.21.5-6.fc43               fedora     132.5 KiB
 libselinux                        aarch64 3.9-5.fc43                  fedora     201.1 KiB
 libsemanage                       aarch64 3.9-4.fc43                  fedora     360.2 KiB
 libsepol                          aarch64 3.9-2.fc43                  fedora     809.8 KiB
 libsmartcols                      aarch64 2.41.3-7.fc43               updates    224.6 KiB
 libssh                            aarch64 0.11.3-1.fc43               fedora     587.0 KiB
 libssh-config                     noarch  0.11.3-1.fc43               fedora     277.0   B
 libstdc++                         aarch64 15.2.1-5.fc43               updates      2.8 MiB
 libtasn1                          aarch64 4.20.0-2.fc43               fedora     220.4 KiB
 libtool-ltdl                      aarch64 2.5.4-8.fc43                updates     94.0 KiB
 libunistring                      aarch64 1.1-10.fc43                 fedora       1.7 MiB
 libusb1                           aarch64 1.0.29-4.fc43               fedora     178.9 KiB
 libuuid                           aarch64 2.41.3-7.fc43               updates     69.4 KiB
 libverto                          aarch64 0.3.2-11.fc43               fedora      69.4 KiB
 libxcrypt                         aarch64 4.5.2-1.fc43                updates    273.4 KiB
 libxml2                           aarch64 2.12.10-5.fc43              fedora       1.9 MiB
 libzstd                           aarch64 1.5.7-2.fc43                fedora     667.7 KiB
 lua-libs                          aarch64 5.4.8-4.fc43                updates    329.9 KiB
 lua-srpm-macros                   noarch  1-16.fc43                   fedora       1.3 KiB
 lz4-libs                          aarch64 1.10.0-3.fc43               fedora     197.4 KiB
 mpfr                              aarch64 4.2.2-2.fc43                fedora     755.5 KiB
 ncurses-base                      noarch  6.5-7.20250614.fc43         fedora     328.1 KiB
 ncurses-libs                      aarch64 6.5-7.20250614.fc43         fedora       1.2 MiB
 nettle                            aarch64 3.10.1-2.fc43               fedora     765.3 KiB
 npth                              aarch64 1.8-3.fc43                  fedora      93.5 KiB
 ocaml-srpm-macros                 noarch  11-2.fc43                   fedora       1.9 KiB
 openblas-srpm-macros              noarch  2-20.fc43                   fedora     112.0   B
 openldap                          aarch64 2.6.10-4.fc43               fedora     761.9 KiB
 openssl-libs                      aarch64 1:3.5.4-1.fc43              updates      7.4 MiB
 p11-kit                           aarch64 0.25.8-1.fc43               fedora       2.5 MiB
 p11-kit-trust                     aarch64 0.25.8-1.fc43               fedora     530.3 KiB
 package-notes-srpm-macros         noarch  0.5-14.fc43                 fedora       1.6 KiB
 pam-libs                          aarch64 1.7.1-4.fc43                updates    223.0 KiB
 pcre2                             aarch64 10.47-1.fc43                updates    714.5 KiB
 pcre2-syntax                      noarch  10.47-1.fc43                updates    281.9 KiB
 perl-srpm-macros                  noarch  1-60.fc43                   fedora     861.0   B
 pkgconf                           aarch64 2.3.0-3.fc43                fedora     112.4 KiB
 pkgconf-m4                        noarch  2.3.0-3.fc43                fedora      14.4 KiB
 pkgconf-pkg-config                aarch64 2.3.0-3.fc43                fedora     990.0   B
 popt                              aarch64 1.19-9.fc43                 fedora     144.8 KiB
 publicsuffix-list-dafsa           noarch  20260116-1.fc43             updates     70.4 KiB
 pyproject-srpm-macros             noarch  1.18.6-1.fc43               updates      1.9 KiB
 python-srpm-macros                noarch  3.14-5.fc43                 fedora      51.5 KiB
 qt5-srpm-macros                   noarch  5.15.18-1.fc43              updates    500.0   B
 qt6-srpm-macros                   noarch  6.10.1-1.fc43               updates    464.0   B
 readline                          aarch64 8.3-2.fc43                  fedora     563.8 KiB
 rpm                               aarch64 6.0.1-1.fc43                updates      3.4 MiB
 rpm-build-libs                    aarch64 6.0.1-1.fc43                updates    264.1 KiB
 rpm-libs                          aarch64 6.0.1-1.fc43                updates    995.5 KiB
 rpm-sequoia                       aarch64 1.10.0-1.fc43               updates      2.3 MiB
 rpm-sign-libs                     aarch64 6.0.1-1.fc43                updates     67.8 KiB
 rust-srpm-macros                  noarch  28.4-1.fc43                 updates      5.5 KiB
 setup                             noarch  2.15.0-26.fc43              fedora     725.0 KiB
 sqlite-libs                       aarch64 3.50.2-2.fc43               fedora       1.5 MiB
 systemd-libs                      aarch64 258.3-2.fc43                updates      2.4 MiB
 systemd-standalone-sysusers       aarch64 258.3-2.fc43                updates    329.6 KiB
 tpm2-tss                          aarch64 4.1.3-8.fc43                fedora       2.1 MiB
 tree-sitter-srpm-macros           noarch  0.4.2-1.fc43                fedora       8.3 KiB
 util-linux-core                   aarch64 2.41.3-7.fc43               updates      2.4 MiB
 xxhash-libs                       aarch64 0.8.3-3.fc43                fedora      86.0 KiB
 xz-libs                           aarch64 1:5.8.1-4.fc43              updates    201.6 KiB
 zig-srpm-macros                   noarch  1-5.fc43                    fedora       1.1 KiB
 zip                               aarch64 3.0-44.fc43                 fedora     762.5 KiB
 zlib-ng-compat                    aarch64 2.3.2-2.fc43                updates    133.5 KiB
 zstd                              aarch64 1.5.7-2.fc43                fedora       1.5 MiB
Installing groups:
 Buildsystem building group                                                                

Transaction Summary:
 Installing:       170 packages

Total size of inbound packages is 58 MiB. Need to download 58 MiB.
After this operation, 226 MiB extra will be used (install 226 MiB, remove 0 B).
[  1/170] bzip2-0:1.0.8-21.fc43.aarch64 100% |   3.1 MiB/s |  51.6 KiB |  00m00s
[  2/170] bash-0:5.3.0-2.fc43.aarch64   100% |  87.6 MiB/s |   1.8 MiB |  00m00s
[  3/170] cpio-0:2.15-6.fc43.aarch64    100% |  12.9 MiB/s | 289.6 KiB |  00m00s
[  4/170] diffutils-0:3.12-3.fc43.aarch 100% |  63.4 MiB/s | 389.7 KiB |  00m00s
[  5/170] fedora-release-common-0:43-25 100% |  12.0 MiB/s |  24.6 KiB |  00m00s
[  6/170] findutils-1:4.10.0-6.fc43.aar 100% | 134.9 MiB/s | 552.7 KiB |  00m00s
[  7/170] gawk-0:5.3.2-2.fc43.aarch64   100% | 159.1 MiB/s |   1.1 MiB |  00m00s
[  8/170] grep-0:3.12-2.fc43.aarch64    100% |  41.3 MiB/s | 296.2 KiB |  00m00s
[  9/170] gzip-0:1.13-4.fc43.aarch64    100% |  27.3 MiB/s | 167.6 KiB |  00m00s
[ 10/170] info-0:7.2-6.fc43.aarch64     100% |  43.8 MiB/s | 179.4 KiB |  00m00s
[ 11/170] patch-0:2.8-2.fc43.aarch64    100% |  36.3 MiB/s | 111.6 KiB |  00m00s
[ 12/170] redhat-rpm-config-0:343-11.fc 100% |  38.6 MiB/s |  79.1 KiB |  00m00s
[ 13/170] sed-0:4.9-5.fc43.aarch64      100% | 102.3 MiB/s | 314.4 KiB |  00m00s
[ 14/170] shadow-utils-2:4.18.0-3.fc43. 100% | 255.9 MiB/s |   1.3 MiB |  00m00s
[ 15/170] tar-2:1.35-6.fc43.aarch64     100% | 118.7 MiB/s | 850.8 KiB |  00m00s
[ 16/170] unzip-0:6.0-67.fc43.aarch64   100% |  30.2 MiB/s | 185.4 KiB |  00m00s
[ 17/170] which-0:2.23-3.fc43.aarch64   100% |  13.5 MiB/s |  41.4 KiB |  00m00s
[ 18/170] coreutils-0:9.7-7.fc43.aarch6 100% | 219.1 MiB/s |   1.1 MiB |  00m00s
[ 19/170] glibc-minimal-langpack-0:2.42 100% |   8.0 MiB/s |  40.9 KiB |  00m00s
[ 20/170] rpm-build-0:6.0.1-1.fc43.aarc 100% |  21.6 MiB/s | 132.4 KiB |  00m00s
[ 21/170] util-linux-0:2.41.3-7.fc43.aa 100% | 196.7 MiB/s |   1.2 MiB |  00m00s
[ 22/170] xz-1:5.8.1-4.fc43.aarch64     100% |  80.0 MiB/s | 573.5 KiB |  00m00s
[ 23/170] filesystem-0:3.18-50.fc43.aar 100% | 121.2 MiB/s |   1.3 MiB |  00m00s
[ 24/170] bzip2-libs-0:1.0.8-21.fc43.aa 100% |   8.0 MiB/s |  40.9 KiB |  00m00s
[ 25/170] ncurses-libs-0:6.5-7.20250614 100% |  39.6 MiB/s | 324.6 KiB |  00m00s
[ 26/170] fedora-repos-0:43-1.noarch    100% |   4.5 MiB/s |   9.1 KiB |  00m00s
[ 27/170] libselinux-0:3.9-5.fc43.aarch 100% |  31.5 MiB/s |  96.6 KiB |  00m00s
[ 28/170] gmp-1:6.3.0-4.fc43.aarch64    100% |  88.3 MiB/s | 271.3 KiB |  00m00s
[ 29/170] mpfr-0:4.2.2-2.fc43.aarch64   100% |  78.6 MiB/s | 322.0 KiB |  00m00s
[ 30/170] readline-0:8.3-2.fc43.aarch64 100% |  72.2 MiB/s | 221.8 KiB |  00m00s
[ 31/170] libattr-0:2.5.2-6.fc43.aarch6 100% |   8.7 MiB/s |  17.7 KiB |  00m00s
[ 32/170] ed-0:1.22.2-1.fc43.aarch64    100% |  27.1 MiB/s |  83.1 KiB |  00m00s
[ 33/170] ansible-srpm-macros-0:1-18.1. 100% |   9.7 MiB/s |  19.9 KiB |  00m00s
[ 34/170] build-reproducibility-srpm-ma 100% |   5.8 MiB/s |  11.8 KiB |  00m00s
[ 35/170] efi-srpm-macros-0:6-4.fc43.no 100% |  21.9 MiB/s |  22.4 KiB |  00m00s
[ 36/170] file-0:5.46-8.fc43.aarch64    100% |  48.0 MiB/s |  49.2 KiB |  00m00s
[ 37/170] dwz-0:0.16-2.fc43.aarch64     100% |  32.3 MiB/s | 132.2 KiB |  00m00s
[ 38/170] filesystem-srpm-macros-0:3.18 100% |  25.8 MiB/s |  26.4 KiB |  00m00s
[ 39/170] fonts-srpm-macros-1:2.0.5-23. 100% |  26.5 MiB/s |  27.2 KiB |  00m00s
[ 40/170] forge-srpm-macros-0:0.4.0-3.f 100% |  19.6 MiB/s |  20.1 KiB |  00m00s
[ 41/170] fpc-srpm-macros-0:1.3-15.fc43 100% |   7.7 MiB/s |   7.9 KiB |  00m00s
[ 42/170] gap-srpm-macros-0:2-1.fc43.no 100% |   8.8 MiB/s |   9.0 KiB |  00m00s
[ 43/170] ghc-srpm-macros-0:1.9.2-3.fc4 100% |   8.5 MiB/s |   8.7 KiB |  00m00s
[ 44/170] go-srpm-macros-0:3.8.0-1.fc43 100% |  27.6 MiB/s |  28.3 KiB |  00m00s
[ 45/170] java-srpm-macros-0:1-7.fc43.n 100% |   7.8 MiB/s |   7.9 KiB |  00m00s
[ 46/170] kernel-srpm-macros-0:1.0-27.f 100% |   8.7 MiB/s |   8.9 KiB |  00m00s
[ 47/170] lua-srpm-macros-0:1-16.fc43.n 100% |   8.6 MiB/s |   8.8 KiB |  00m00s
[ 48/170] ocaml-srpm-macros-0:11-2.fc43 100% |   9.0 MiB/s |   9.3 KiB |  00m00s
[ 49/170] openblas-srpm-macros-0:2-20.f 100% |   7.4 MiB/s |   7.6 KiB |  00m00s
[ 50/170] package-notes-srpm-macros-0:0 100% |   8.8 MiB/s |   9.0 KiB |  00m00s
[ 51/170] perl-srpm-macros-0:1-60.fc43. 100% |   8.1 MiB/s |   8.3 KiB |  00m00s
[ 52/170] python-srpm-macros-0:3.14-5.f 100% |  22.8 MiB/s |  23.4 KiB |  00m00s
[ 53/170] tree-sitter-srpm-macros-0:0.4 100% |  13.0 MiB/s |  13.4 KiB |  00m00s
[ 54/170] zig-srpm-macros-0:1-5.fc43.no 100% |   8.2 MiB/s |   8.4 KiB |  00m00s
[ 55/170] zip-0:3.0-44.fc43.aarch64     100% |  85.5 MiB/s | 262.6 KiB |  00m00s
[ 56/170] libacl-0:2.3.2-4.fc43.aarch64 100% |   7.9 MiB/s |  24.2 KiB |  00m00s
[ 57/170] libeconf-0:0.7.9-2.fc43.aarch 100% |  11.4 MiB/s |  35.2 KiB |  00m00s
[ 58/170] libsemanage-0:3.9-4.fc43.aarc 100% |  38.9 MiB/s | 119.5 KiB |  00m00s
[ 59/170] setup-0:2.15.0-26.fc43.noarch 100% |  38.4 MiB/s | 157.3 KiB |  00m00s
[ 60/170] coreutils-common-0:9.7-7.fc43 100% | 233.3 MiB/s |   2.1 MiB |  00m00s
[ 61/170] libcap-0:2.76-3.fc43.aarch64  100% |  12.3 MiB/s |  87.9 KiB |  00m00s
[ 62/170] glibc-0:2.42-9.fc43.aarch64   100% | 151.7 MiB/s |   1.8 MiB |  00m00s
[ 63/170] glibc-common-0:2.42-9.fc43.aa 100% |  34.3 MiB/s | 315.9 KiB |  00m00s
[ 64/170] rpm-0:6.0.1-1.fc43.aarch64    100% |  51.2 MiB/s | 576.3 KiB |  00m00s
[ 65/170] pkgconf-pkg-config-0:2.3.0-3. 100% |   4.7 MiB/s |   9.6 KiB |  00m00s
[ 66/170] debugedit-0:5.2-3.fc43.aarch6 100% |  13.8 MiB/s |  84.7 KiB |  00m00s
[ 67/170] popt-0:1.19-9.fc43.aarch64    100% |  31.9 MiB/s |  65.3 KiB |  00m00s
[ 68/170] zstd-0:1.5.7-2.fc43.aarch64   100% | 145.5 MiB/s | 446.9 KiB |  00m00s
[ 69/170] libblkid-0:2.41.3-7.fc43.aarc 100% |  39.6 MiB/s | 121.5 KiB |  00m00s
[ 70/170] libfdisk-0:2.41.3-7.fc43.aarc 100% |  37.6 MiB/s | 154.2 KiB |  00m00s
[ 71/170] liblastlog2-0:2.41.3-7.fc43.a 100% |  11.5 MiB/s |  23.5 KiB |  00m00s
[ 72/170] libmount-0:2.41.3-7.fc43.aarc 100% |  51.6 MiB/s | 158.6 KiB |  00m00s
[ 73/170] libuuid-0:2.41.3-7.fc43.aarch 100% |  12.7 MiB/s |  26.0 KiB |  00m00s
[ 74/170] libsmartcols-0:2.41.3-7.fc43. 100% |  26.9 MiB/s |  82.5 KiB |  00m00s
[ 75/170] libcap-ng-0:0.8.5-8.fc43.aarc 100% |  31.5 MiB/s |  32.2 KiB |  00m00s
[ 76/170] util-linux-core-0:2.41.3-7.fc 100% | 132.1 MiB/s | 541.1 KiB |  00m00s
[ 77/170] xz-libs-1:5.8.1-4.fc43.aarch6 100% |  21.7 MiB/s | 111.1 KiB |  00m00s
[ 78/170] ncurses-base-0:6.5-7.20250614 100% |  21.5 MiB/s |  88.2 KiB |  00m00s
[ 79/170] fedora-gpg-keys-0:43-1.noarch 100% |  45.2 MiB/s | 138.9 KiB |  00m00s
[ 80/170] libsepol-0:3.9-2.fc43.aarch64 100% | 105.3 MiB/s | 323.6 KiB |  00m00s
[ 81/170] add-determinism-0:0.6.0-2.fc4 100% | 207.9 MiB/s | 851.5 KiB |  00m00s
[ 82/170] file-libs-0:5.46-8.fc43.aarch 100% | 138.0 MiB/s | 848.0 KiB |  00m00s
[ 83/170] gnulib-l10n-0:20241231-1.fc43 100% |  29.3 MiB/s | 150.2 KiB |  00m00s
[ 84/170] glibc-gconv-extra-0:2.42-9.fc 100% | 237.0 MiB/s |   1.7 MiB |  00m00s
[ 85/170] pkgconf-0:2.3.0-3.fc43.aarch6 100% |   7.2 MiB/s |  44.4 KiB |  00m00s
[ 86/170] pkgconf-m4-0:2.3.0-3.fc43.noa 100% |   3.4 MiB/s |  13.9 KiB |  00m00s
[ 87/170] libpkgconf-0:2.3.0-3.fc43.aar 100% |  18.5 MiB/s |  37.9 KiB |  00m00s
[ 88/170] lz4-libs-0:1.10.0-3.fc43.aarc 100% |  25.9 MiB/s |  79.5 KiB |  00m00s
[ 89/170] sqlite-libs-0:3.50.2-2.fc43.a 100% | 181.3 MiB/s | 742.8 KiB |  00m00s
[ 90/170] rpm-libs-0:6.0.1-1.fc43.aarch 100% |  61.8 MiB/s | 379.8 KiB |  00m00s
[ 91/170] libzstd-0:1.5.7-2.fc43.aarch6 100% |  46.2 MiB/s | 283.6 KiB |  00m00s
[ 92/170] rpm-sign-libs-0:6.0.1-1.fc43. 100% |  26.7 MiB/s |  27.3 KiB |  00m00s
[ 93/170] rpm-build-libs-0:6.0.1-1.fc43 100% |  23.0 MiB/s | 117.5 KiB |  00m00s
[ 94/170] ima-evm-utils-libs-0:1.6.2-6. 100% |  28.6 MiB/s |  29.3 KiB |  00m00s
[ 95/170] libfsverity-0:1.6-3.fc43.aarc 100% |  18.1 MiB/s |  18.6 KiB |  00m00s
[ 96/170] json-c-0:0.18-7.fc43.aarch64  100% |  44.1 MiB/s |  45.1 KiB |  00m00s
[ 97/170] tpm2-tss-0:4.1.3-8.fc43.aarch 100% | 130.4 MiB/s | 400.5 KiB |  00m00s
[ 98/170] libusb1-0:1.0.29-4.fc43.aarch 100% |  25.2 MiB/s |  77.5 KiB |  00m00s
[ 99/170] libgcc-0:15.2.1-5.fc43.aarch6 100% |  58.1 MiB/s | 119.1 KiB |  00m00s
[100/170] libstdc++-0:15.2.1-5.fc43.aar 100% | 208.4 MiB/s | 853.6 KiB |  00m00s
[101/170] zlib-ng-compat-0:2.3.2-2.fc43 100% |  17.6 MiB/s |  72.2 KiB |  00m00s
[102/170] openssl-libs-1:3.5.4-1.fc43.a 100% | 245.0 MiB/s |   2.4 MiB |  00m00s
[103/170] ca-certificates-0:2025.2.80_v 100% |  95.2 MiB/s | 975.4 KiB |  00m00s
[104/170] p11-kit-0:0.25.8-1.fc43.aarch 100% |  48.1 MiB/s | 492.3 KiB |  00m00s
[105/170] p11-kit-trust-0:0.25.8-1.fc43 100% |  27.1 MiB/s | 138.6 KiB |  00m00s
[106/170] libtasn1-0:4.20.0-2.fc43.aarc 100% |  36.0 MiB/s |  73.8 KiB |  00m00s
[107/170] pam-libs-0:1.7.1-4.fc43.aarch 100% |  55.5 MiB/s |  56.8 KiB |  00m00s
[108/170] audit-libs-0:4.1.2-2.fc43.aar 100% |  45.5 MiB/s | 139.9 KiB |  00m00s
[109/170] libxcrypt-0:4.5.2-1.fc43.aarc 100% |  40.8 MiB/s | 125.2 KiB |  00m00s
[110/170] gnat-srpm-macros-0:7-1.fc43.n 100% |   8.5 MiB/s |   8.7 KiB |  00m00s
[111/170] pyproject-srpm-macros-0:1.18. 100% |   6.5 MiB/s |  13.4 KiB |  00m00s
[112/170] qt5-srpm-macros-0:5.15.18-1.f 100% |   8.4 MiB/s |   8.6 KiB |  00m00s
[113/170] qt6-srpm-macros-0:6.10.1-1.fc 100% |   9.1 MiB/s |   9.4 KiB |  00m00s
[114/170] rust-srpm-macros-0:28.4-1.fc4 100% |  10.6 MiB/s |  10.8 KiB |  00m00s
[115/170] alternatives-0:1.33-3.fc43.aa 100% |  39.4 MiB/s |  40.3 KiB |  00m00s
[116/170] libffi-0:3.5.2-1.fc43.aarch64 100% |  38.4 MiB/s |  39.4 KiB |  00m00s
[117/170] systemd-libs-0:258.3-2.fc43.a 100% | 192.2 MiB/s | 787.3 KiB |  00m00s
[118/170] pcre2-0:10.47-1.fc43.aarch64  100% |  60.1 MiB/s | 246.2 KiB |  00m00s
[119/170] pcre2-syntax-0:10.47-1.fc43.n 100% |  32.2 MiB/s | 164.7 KiB |  00m00s
[120/170] elfutils-libelf-0:0.194-1.fc4 100% |  65.9 MiB/s | 202.3 KiB |  00m00s
[121/170] elfutils-libs-0:0.194-1.fc43. 100% |  64.9 MiB/s | 266.0 KiB |  00m00s
[122/170] elfutils-0:0.194-1.fc43.aarch 100% | 130.8 MiB/s | 535.6 KiB |  00m00s
[123/170] elfutils-debuginfod-client-0: 100% |  22.6 MiB/s |  46.3 KiB |  00m00s
[124/170] jansson-0:2.14-3.fc43.aarch64 100% |   9.1 MiB/s |  46.7 KiB |  00m00s
[125/170] gnupg2-0:2.4.9-4.fc43.aarch64 100% |  89.8 MiB/s |   1.6 MiB |  00m00s
[126/170] gpgverify-0:2.2-3.fc43.noarch 100% | 854.1 KiB/s |  11.1 KiB |  00m00s
[127/170] binutils-0:2.45.1-4.fc43.aarc 100% | 232.8 MiB/s |   6.3 MiB |  00m00s
[128/170] gnupg2-dirmngr-0:2.4.9-4.fc43 100% |  32.5 MiB/s | 266.2 KiB |  00m00s
[129/170] gnupg2-gpg-agent-0:2.4.9-4.fc 100% |  28.9 MiB/s | 266.3 KiB |  00m00s
[130/170] gnupg2-gpgconf-0:2.4.9-4.fc43 100% |  37.1 MiB/s | 114.1 KiB |  00m00s
[131/170] gnupg2-keyboxd-0:2.4.9-4.fc43 100% |  44.6 MiB/s |  91.4 KiB |  00m00s
[132/170] gnupg2-verify-0:2.4.9-4.fc43. 100% |  53.5 MiB/s | 164.4 KiB |  00m00s
[133/170] libassuan-0:2.5.7-4.fc43.aarc 100% |  21.7 MiB/s |  66.5 KiB |  00m00s
[134/170] npth-0:1.8-3.fc43.aarch64     100% |  24.4 MiB/s |  25.0 KiB |  00m00s
[135/170] libgpg-error-0:1.55-2.fc43.aa 100% |  59.4 MiB/s | 243.5 KiB |  00m00s
[136/170] libksba-0:1.6.7-4.fc43.aarch6 100% |  76.9 MiB/s | 157.5 KiB |  00m00s
[137/170] openldap-0:2.6.10-4.fc43.aarc 100% |  61.3 MiB/s | 251.1 KiB |  00m00s
[138/170] cyrus-sasl-lib-0:2.1.28-33.fc 100% | 151.2 MiB/s | 774.0 KiB |  00m00s
[139/170] libevent-0:2.1.12-16.fc43.aar 100% |  49.5 MiB/s | 253.4 KiB |  00m00s
[140/170] gdbm-libs-1:1.23-10.fc43.aarc 100% |  18.2 MiB/s |  56.0 KiB |  00m00s
[141/170] lua-libs-0:5.4.8-4.fc43.aarch 100% |  42.0 MiB/s | 129.1 KiB |  00m00s
[142/170] rpm-sequoia-0:1.10.0-1.fc43.a 100% | 174.2 MiB/s | 891.7 KiB |  00m00s
[143/170] libgomp-0:15.2.1-5.fc43.aarch 100% |  59.3 MiB/s | 364.2 KiB |  00m00s
[144/170] libarchive-0:3.8.4-1.fc43.aar 100% |  80.8 MiB/s | 413.6 KiB |  00m00s
[145/170] libxml2-0:2.12.10-5.fc43.aarc 100% | 165.7 MiB/s | 678.7 KiB |  00m00s
[146/170] curl-0:8.15.0-5.fc43.aarch64  100% |  54.9 MiB/s | 224.9 KiB |  00m00s
[147/170] crypto-policies-0:20251125-1. 100% |  31.8 MiB/s |  97.8 KiB |  00m00s
[148/170] libgcrypt-0:1.11.1-3.fc43.aar 100% | 126.6 MiB/s | 518.4 KiB |  00m00s
[149/170] gnutls-0:3.8.11-5.fc43.aarch6 100% | 214.5 MiB/s |   1.3 MiB |  00m00s
[150/170] libidn2-0:2.3.8-2.fc43.aarch6 100% |  28.4 MiB/s | 174.6 KiB |  00m00s
[151/170] libunistring-0:1.1-10.fc43.aa 100% |  87.8 MiB/s | 539.2 KiB |  00m00s
[152/170] elfutils-default-yama-scope-0 100% |   6.0 MiB/s |  12.4 KiB |  00m00s
[153/170] nettle-0:3.10.1-2.fc43.aarch6 100% | 103.9 MiB/s | 425.7 KiB |  00m00s
[154/170] libtool-ltdl-0:2.5.4-8.fc43.a 100% |  17.4 MiB/s |  35.6 KiB |  00m00s
[155/170] fedora-release-0:43-25.noarch 100% |   6.6 MiB/s |  13.5 KiB |  00m00s
[156/170] fedora-release-identity-basic 100% |  13.9 MiB/s |  14.3 KiB |  00m00s
[157/170] xxhash-libs-0:0.8.3-3.fc43.aa 100% |  16.8 MiB/s |  34.5 KiB |  00m00s
[158/170] systemd-standalone-sysusers-0 100% |  27.6 MiB/s | 141.4 KiB |  00m00s
[159/170] gdb-minimal-0:17.1-1.fc43.aar 100% | 325.2 MiB/s |   4.2 MiB |  00m00s
[160/170] libcurl-0:8.15.0-5.fc43.aarch 100% |  32.0 MiB/s | 392.7 KiB |  00m00s
[161/170] krb5-libs-0:1.21.3-7.fc43.aar 100% |  73.3 MiB/s | 751.0 KiB |  00m00s
[162/170] libnghttp2-0:1.66.0-2.fc43.aa 100% |  11.8 MiB/s |  72.2 KiB |  00m00s
[163/170] libpsl-0:0.21.5-6.fc43.aarch6 100% |  15.9 MiB/s |  65.1 KiB |  00m00s
[164/170] libssh-0:0.11.3-1.fc43.aarch6 100% |  75.1 MiB/s | 230.6 KiB |  00m00s
[165/170] keyutils-libs-0:1.6.3-6.fc43. 100% |  30.8 MiB/s |  31.5 KiB |  00m00s
[166/170] libcom_err-0:1.47.3-2.fc43.aa 100% |  26.1 MiB/s |  26.7 KiB |  00m00s
[167/170] libverto-0:0.3.2-11.fc43.aarc 100% |  10.0 MiB/s |  20.4 KiB |  00m00s
[168/170] libssh-config-0:0.11.3-1.fc43 100% |   8.9 MiB/s |   9.1 KiB |  00m00s
[169/170] publicsuffix-list-dafsa-0:202 100% |  58.9 MiB/s |  60.3 KiB |  00m00s
[170/170] libbrotli-0:1.2.0-1.fc43.aarc 100% | 114.1 MiB/s | 350.4 KiB |  00m00s
--------------------------------------------------------------------------------
[170/170] Total                         100% | 197.3 MiB/s |  57.8 MiB |  00m00s
Running transaction
Importing OpenPGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[  1/172] Verify package files          100% | 805.0   B/s | 170.0   B |  00m00s
[  2/172] Prepare transaction           100% |   2.6 KiB/s | 170.0   B |  00m00s
[  3/172] Installing libgcc-0:15.2.1-5. 100% | 109.3 MiB/s | 223.9 KiB |  00m00s
[  4/172] Installing publicsuffix-list- 100% |  69.4 MiB/s |  71.1 KiB |  00m00s
[  5/172] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  6/172] Installing fedora-release-ide 100% | 867.2 KiB/s | 888.0   B |  00m00s
[  7/172] Installing fedora-gpg-keys-0: 100% |  29.1 MiB/s | 179.0 KiB |  00m00s
[  8/172] Installing fedora-repos-0:43- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[  9/172] Installing fedora-release-com 100% |  24.3 MiB/s |  24.9 KiB |  00m00s
[ 10/172] Installing fedora-release-0:4 100% |  13.5 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch                   
>>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch                  
>>> Scriptlet output:                                                           
>>> Creating group 'adm' with GID 4.                                            
>>> Creating group 'audio' with GID 63.                                         
>>> Creating group 'cdrom' with GID 11.                                         
>>> Creating group 'clock' with GID 103.                                        
>>> Creating group 'dialout' with GID 18.                                       
>>> Creating group 'disk' with GID 6.                                           
>>> Creating group 'floppy' with GID 19.                                        
>>> Creating group 'ftp' with GID 50.                                           
>>> Creating group 'games' with GID 20.                                         
>>> Creating group 'input' with GID 104.                                        
>>> Creating group 'kmem' with GID 9.                                           
>>> Creating group 'kvm' with GID 36.                                           
>>> Creating group 'lock' with GID 54.                                          
>>> Creating group 'lp' with GID 7.                                             
>>> Creating group 'mail' with GID 12.                                          
>>> Creating group 'man' with GID 15.                                           
>>> Creating group 'mem' with GID 8.                                            
>>> Creating group 'nobody' with GID 65534.                                     
>>> Creating group 'render' with GID 105.                                       
>>> Creating group 'root' with GID 0.                                           
>>> Creating group 'sgx' with GID 106.                                          
>>> Creating group 'sys' with GID 3.                                            
>>> Creating group 'tape' with GID 33.                                          
>>> Creating group 'tty' with GID 5.                                            
>>> Creating group 'users' with GID 100.                                        
>>> Creating group 'utmp' with GID 22.                                          
>>> Creating group 'video' with GID 39.                                         
>>> Creating group 'wheel' with GID 10.                                         
>>> Creating user 'adm' (adm) with UID 3 and GID 4.                             
>>> Creating group 'bin' with GID 1.                                            
>>> Creating user 'bin' (bin) with UID 1 and GID 1.                             
>>> Creating group 'daemon' with GID 2.                                         
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.                       
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.                      
>>> Creating user 'games' (games) with UID 12 and GID 100.                      
>>> Creating user 'halt' (halt) with UID 7 and GID 0.                           
>>> Creating user 'lp' (lp) with UID 4 and GID 7.                               
>>> Creating user 'mail' (mail) with UID 8 and GID 12.                          
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. 
>>> Creating user 'operator' (operator) with UID 11 and GID 0.                  
>>> Creating user 'root' (Super User) with UID 0 and GID 0.                     
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.                   
>>> Creating user 'sync' (sync) with UID 5 and GID 0.                           
>>>                                                                             
[ 11/172] Installing setup-0:2.15.0-26. 100% |  35.7 MiB/s | 730.6 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew                               
[ 12/172] Installing filesystem-0:3.18- 100% |   1.8 MiB/s | 212.8 KiB |  00m00s
[ 13/172] Installing pcre2-syntax-0:10. 100% | 138.8 MiB/s | 284.3 KiB |  00m00s
[ 14/172] Installing rust-srpm-macros-0 100% |   0.0   B/s |   6.4 KiB |  00m00s
[ 15/172] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 740.0   B |  00m00s
[ 16/172] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[ 17/172] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[ 18/172] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[ 19/172] Installing gnulib-l10n-0:2024 100% | 129.3 MiB/s | 661.9 KiB |  00m00s
[ 20/172] Installing coreutils-common-0 100% | 289.5 MiB/s |  11.3 MiB |  00m00s
[ 21/172] Installing ncurses-base-0:6.5 100% |  43.2 MiB/s | 353.5 KiB |  00m00s
[ 22/172] Installing bash-0:5.3.0-2.fc4 100% | 200.7 MiB/s |   8.4 MiB |  00m00s
[ 23/172] Installing glibc-common-0:2.4 100% |  57.6 MiB/s |   1.3 MiB |  00m00s
[ 24/172] Installing glibc-gconv-extra- 100% | 358.9 MiB/s |  18.7 MiB |  00m00s
[ 25/172] Installing glibc-0:2.42-9.fc4 100% | 142.7 MiB/s |   6.3 MiB |  00m00s
[ 26/172] Installing ncurses-libs-0:6.5 100% | 207.9 MiB/s |   1.2 MiB |  00m00s
[ 27/172] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 28/172] Installing zlib-ng-compat-0:2 100% | 131.1 MiB/s | 134.3 KiB |  00m00s
[ 29/172] Installing bzip2-libs-0:1.0.8 100% |  72.0 MiB/s |  73.8 KiB |  00m00s
[ 30/172] Installing libgpg-error-0:1.5 100% |  45.4 MiB/s | 977.1 KiB |  00m00s
[ 31/172] Installing libstdc++-0:15.2.1 100% | 315.1 MiB/s |   2.8 MiB |  00m00s
[ 32/172] Installing xz-libs-1:5.8.1-4. 100% | 197.9 MiB/s | 202.7 KiB |  00m00s
[ 33/172] Installing libassuan-0:2.5.7- 100% | 212.6 MiB/s | 217.7 KiB |  00m00s
[ 34/172] Installing libgcrypt-0:1.11.1 100% | 238.9 MiB/s |   1.2 MiB |  00m00s
[ 35/172] Installing readline-0:8.3-2.f 100% | 184.2 MiB/s | 565.9 KiB |  00m00s
[ 36/172] Installing gmp-1:6.3.0-4.fc43 100% | 214.9 MiB/s | 660.1 KiB |  00m00s
[ 37/172] Installing libuuid-0:2.41.3-7 100% |  68.9 MiB/s |  70.6 KiB |  00m00s
[ 38/172] Installing popt-0:1.19-9.fc43 100% |  37.0 MiB/s | 151.4 KiB |  00m00s
[ 39/172] Installing npth-0:1.8-3.fc43. 100% |  92.4 MiB/s |  94.6 KiB |  00m00s
[ 40/172] Installing libblkid-0:2.41.3- 100% | 142.4 MiB/s | 291.6 KiB |  00m00s
[ 41/172] Installing sqlite-libs-0:3.50 100% | 250.2 MiB/s |   1.5 MiB |  00m00s
[ 42/172] Installing libzstd-0:1.5.7-2. 100% | 217.8 MiB/s | 669.0 KiB |  00m00s
[ 43/172] Installing elfutils-libelf-0: 100% | 286.1 MiB/s |   1.1 MiB |  00m00s
[ 44/172] Installing libxcrypt-0:4.5.2- 100% | 134.8 MiB/s | 276.1 KiB |  00m00s
[ 45/172] Installing gnupg2-gpgconf-0:2 100% |  18.6 MiB/s | 324.0 KiB |  00m00s
[ 46/172] Installing libattr-0:2.5.2-6. 100% |  67.8 MiB/s |  69.4 KiB |  00m00s
[ 47/172] Installing libacl-0:2.3.2-4.f 100% |  67.2 MiB/s |  68.8 KiB |  00m00s
[ 48/172] Installing libtasn1-0:4.20.0- 100% | 217.0 MiB/s | 222.2 KiB |  00m00s
[ 49/172] Installing libunistring-0:1.1 100% | 291.0 MiB/s |   1.7 MiB |  00m00s
[ 50/172] Installing libidn2-0:2.3.8-2. 100% |  46.1 MiB/s | 566.7 KiB |  00m00s
[ 51/172] Installing crypto-policies-0: 100% |  18.7 MiB/s | 172.2 KiB |  00m00s
[ 52/172] Installing dwz-0:0.16-2.fc43. 100% |  16.7 MiB/s | 324.0 KiB |  00m00s
[ 53/172] Installing gnupg2-verify-0:2. 100% |  19.8 MiB/s | 365.8 KiB |  00m00s
[ 54/172] Installing mpfr-0:4.2.2-2.fc4 100% | 184.9 MiB/s | 757.2 KiB |  00m00s
[ 55/172] Installing gawk-0:5.3.2-2.fc4 100% |  99.3 MiB/s |   2.6 MiB |  00m00s
[ 56/172] Installing libksba-0:1.6.7-4. 100% | 195.8 MiB/s | 401.0 KiB |  00m00s
[ 57/172] Installing unzip-0:6.0-67.fc4 100% |  25.7 MiB/s | 473.7 KiB |  00m00s
[ 58/172] Installing file-libs-0:5.46-8 100% | 540.0 MiB/s |  11.9 MiB |  00m00s
[ 59/172] Installing file-0:5.46-8.fc43 100% |   8.1 MiB/s | 141.7 KiB |  00m00s
[ 60/172] Installing libeconf-0:0.7.9-2 100% |  80.7 MiB/s |  82.6 KiB |  00m00s
[ 61/172] Installing libsmartcols-0:2.4 100% | 220.4 MiB/s | 225.7 KiB |  00m00s
[ 62/172] Installing libcap-ng-0:0.8.5- 100% | 159.0 MiB/s | 162.8 KiB |  00m00s
[ 63/172] Installing audit-libs-0:4.1.2 100% | 239.1 MiB/s | 489.6 KiB |  00m00s
[ 64/172] Installing pam-libs-0:1.7.1-4 100% | 220.0 MiB/s | 225.3 KiB |  00m00s
[ 65/172] Installing libcap-0:2.76-3.fc 100% |  27.9 MiB/s | 513.9 KiB |  00m00s
[ 66/172] Installing systemd-libs-0:258 100% | 266.7 MiB/s |   2.4 MiB |  00m00s
[ 67/172] Installing libsepol-0:3.9-2.f 100% | 263.9 MiB/s | 810.8 KiB |  00m00s
[ 68/172] Installing lz4-libs-0:1.10.0- 100% | 193.9 MiB/s | 198.5 KiB |  00m00s
[ 69/172] Installing json-c-0:0.18-7.fc 100% | 136.7 MiB/s | 139.9 KiB |  00m00s
[ 70/172] Installing alternatives-0:1.3 100% |   5.3 MiB/s |  91.8 KiB |  00m00s
[ 71/172] Installing libffi-0:3.5.2-1.f 100% | 153.6 MiB/s | 157.3 KiB |  00m00s
[ 72/172] Installing p11-kit-0:0.25.8-1 100% |  89.8 MiB/s |   2.5 MiB |  00m00s
[ 73/172] Installing p11-kit-trust-0:0. 100% |  19.2 MiB/s | 532.0 KiB |  00m00s
[ 74/172] Installing pcre2-0:10.47-1.fc 100% | 233.0 MiB/s | 715.9 KiB |  00m00s
[ 75/172] Installing libselinux-0:3.9-5 100% |  98.8 MiB/s | 202.4 KiB |  00m00s
[ 76/172] Installing grep-0:3.12-2.fc43 100% |  43.2 MiB/s |   1.0 MiB |  00m00s
[ 77/172] Installing findutils-1:4.10.0 100% |  76.8 MiB/s |   1.9 MiB |  00m00s
[ 78/172] Installing sed-0:4.9-5.fc43.a 100% |  39.1 MiB/s | 881.4 KiB |  00m00s
[ 79/172] Installing xz-1:5.8.1-4.fc43. 100% |  56.5 MiB/s |   1.4 MiB |  00m00s
[ 80/172] Installing libmount-0:2.41.3- 100% | 205.7 MiB/s | 421.2 KiB |  00m00s
[ 81/172] Installing lua-libs-0:5.4.8-4 100% | 161.8 MiB/s | 331.4 KiB |  00m00s
[ 82/172] Installing util-linux-core-0: 100% |  91.3 MiB/s |   2.5 MiB |  00m00s
[ 83/172] Installing openssl-libs-1:3.5 100% | 285.5 MiB/s |   7.4 MiB |  00m00s
[ 84/172] Installing coreutils-0:9.7-7. 100% | 167.9 MiB/s |   8.2 MiB |  00m00s
[ 85/172] Installing ca-certificates-0: 100% |   1.4 MiB/s |   2.5 MiB |  00m02s
[ 86/172] Installing gzip-0:1.13-4.fc43 100% |  21.0 MiB/s | 430.2 KiB |  00m00s
[ 87/172] Installing libfsverity-0:1.6- 100% |  67.8 MiB/s |  69.4 KiB |  00m00s
[ 88/172] Installing libevent-0:2.1.12- 100% | 271.3 MiB/s |   1.1 MiB |  00m00s
[ 89/172] Installing rpm-sequoia-0:1.10 100% | 288.4 MiB/s |   2.3 MiB |  00m00s
[ 90/172] Installing tar-2:1.35-6.fc43. 100% | 107.3 MiB/s |   3.0 MiB |  00m00s
[ 91/172] Installing libsemanage-0:3.9- 100% | 176.7 MiB/s | 361.9 KiB |  00m00s
[ 92/172] Installing systemd-standalone 100% |  19.0 MiB/s | 330.1 KiB |  00m00s
[ 93/172] Installing rpm-libs-0:6.0.1-1 100% | 243.4 MiB/s | 997.1 KiB |  00m00s
[ 94/172] Installing zstd-0:1.5.7-2.fc4 100% |  71.7 MiB/s |   1.5 MiB |  00m00s
[ 95/172] Installing libusb1-0:1.0.29-4 100% |  17.6 MiB/s | 180.6 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.aarch64                 
>>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.aarch64                
>>> Scriptlet output:                                                           
>>> Creating group 'tss' with GID 59.                                           
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.   
>>>                                                                             
[ 96/172] Installing tpm2-tss-0:4.1.3-8 100% | 239.9 MiB/s |   2.2 MiB |  00m00s
[ 97/172] Installing ima-evm-utils-libs 100% |  91.8 MiB/s |  94.0 KiB |  00m00s
[ 98/172] Installing gnupg2-gpg-agent-0 100% |  28.7 MiB/s | 851.2 KiB |  00m00s
[ 99/172] Installing zip-0:3.0-44.fc43. 100% |  37.4 MiB/s | 766.4 KiB |  00m00s
[100/172] Installing gnupg2-keyboxd-0:2 100% |  28.6 MiB/s | 234.6 KiB |  00m00s
[101/172] Installing libpsl-0:0.21.5-6. 100% | 130.5 MiB/s | 133.6 KiB |  00m00s
[102/172] Installing liblastlog2-0:2.41 100% |  17.1 MiB/s | 140.0 KiB |  00m00s
[103/172] Installing libfdisk-0:2.41.3- 100% | 136.7 MiB/s | 419.9 KiB |  00m00s
[104/172] Installing nettle-0:3.10.1-2. 100% | 187.6 MiB/s | 768.4 KiB |  00m00s
[105/172] Installing gnutls-0:3.8.11-5. 100% | 259.6 MiB/s |   3.6 MiB |  00m00s
[106/172] Installing libxml2-0:2.12.10- 100% |  75.7 MiB/s |   1.9 MiB |  00m00s
[107/172] Installing libarchive-0:3.8.4 100% | 238.6 MiB/s | 977.2 KiB |  00m00s
[108/172] Installing bzip2-0:1.0.8-21.f 100% |  10.1 MiB/s | 175.8 KiB |  00m00s
[109/172] Installing add-determinism-0: 100% |  91.4 MiB/s |   2.1 MiB |  00m00s
[110/172] Installing build-reproducibil 100% |   1.0 MiB/s |   1.0 KiB |  00m00s
[111/172] Installing cpio-0:2.15-6.fc43 100% |  49.8 MiB/s |   1.1 MiB |  00m00s
[112/172] Installing diffutils-0:3.12-3 100% |  67.6 MiB/s |   1.6 MiB |  00m00s
[113/172] Installing ed-0:1.22.2-1.fc43 100% |   9.1 MiB/s | 158.3 KiB |  00m00s
[114/172] Installing patch-0:2.8-2.fc43 100% |  15.2 MiB/s | 264.1 KiB |  00m00s
[115/172] Installing libpkgconf-0:2.3.0 100% | 132.0 MiB/s | 135.1 KiB |  00m00s
[116/172] Installing pkgconf-0:2.3.0-3. 100% |   6.2 MiB/s | 114.9 KiB |  00m00s
[117/172] Installing pkgconf-pkg-config 100% | 104.3 KiB/s |   1.8 KiB |  00m00s
[118/172] Installing jansson-0:2.14-3.f 100% |  92.3 MiB/s |  94.5 KiB |  00m00s
[119/172] Installing gdbm-libs-1:1.23-1 100% | 115.1 MiB/s | 235.6 KiB |  00m00s
[120/172] Installing cyrus-sasl-lib-0:2 100% |  96.7 MiB/s |   2.4 MiB |  00m00s
[121/172] Installing libgomp-0:15.2.1-5 100% | 253.2 MiB/s | 518.5 KiB |  00m00s
[122/172] Installing libtool-ltdl-0:2.5 100% |  92.9 MiB/s |  95.1 KiB |  00m00s
[123/172] Installing openldap-0:2.6.10- 100% | 186.9 MiB/s | 765.6 KiB |  00m00s
[124/172] Installing gnupg2-dirmngr-0:2 100% |  23.5 MiB/s | 649.1 KiB |  00m00s
[125/172] Installing gnupg2-0:2.4.9-4.f 100% | 163.5 MiB/s |   6.5 MiB |  00m00s
[126/172] Installing rpm-sign-libs-0:6. 100% |  67.0 MiB/s |  68.6 KiB |  00m00s
[127/172] Installing gpgverify-0:2.2-3. 100% |   9.2 MiB/s |   9.4 KiB |  00m00s
[128/172] Installing xxhash-libs-0:0.8. 100% |  85.3 MiB/s |  87.4 KiB |  00m00s
[129/172] Installing libnghttp2-0:1.66. 100% | 194.4 MiB/s | 199.1 KiB |  00m00s
[130/172] Installing keyutils-libs-0:1. 100% |  97.4 MiB/s |  99.8 KiB |  00m00s
[131/172] Installing libcom_err-0:1.47. 100% | 109.5 MiB/s | 112.2 KiB |  00m00s
[132/172] Installing libverto-0:0.3.2-1 100% |  69.5 MiB/s |  71.2 KiB |  00m00s
[133/172] Installing krb5-libs-0:1.21.3 100% | 253.2 MiB/s |   2.5 MiB |  00m00s
[134/172] Installing libssh-0:0.11.3-1. 100% | 191.7 MiB/s | 589.1 KiB |  00m00s
[135/172] Installing libbrotli-0:1.2.0- 100% | 222.6 MiB/s | 911.8 KiB |  00m00s
[136/172] Installing libcurl-0:8.15.0-5 100% | 223.7 MiB/s | 916.2 KiB |  00m00s
[137/172] Installing curl-0:8.15.0-5.fc 100% |  16.0 MiB/s | 460.1 KiB |  00m00s
[138/172] Installing rpm-0:6.0.1-1.fc43 100% |  57.5 MiB/s |   2.8 MiB |  00m00s
[139/172] Installing efi-srpm-macros-0: 100% |  40.2 MiB/s |  41.1 KiB |  00m00s
[140/172] Installing java-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[141/172] Installing lua-srpm-macros-0: 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[142/172] Installing tree-sitter-srpm-m 100% |   9.1 MiB/s |   9.3 KiB |  00m00s
[143/172] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[144/172] Installing filesystem-srpm-ma 100% |  38.0 MiB/s |  38.9 KiB |  00m00s
[145/172] Installing elfutils-default-y 100% | 291.9 KiB/s |   2.0 KiB |  00m00s
[146/172] Installing elfutils-libs-0:0. 100% | 182.7 MiB/s | 748.5 KiB |  00m00s
[147/172] Installing elfutils-debuginfo 100% |   7.5 MiB/s | 146.3 KiB |  00m00s
[148/172] Installing elfutils-0:0.194-1 100% | 118.6 MiB/s |   3.2 MiB |  00m00s
[149/172] Installing binutils-0:2.45.1- 100% | 272.1 MiB/s |  31.0 MiB |  00m00s
[150/172] Installing gdb-minimal-0:17.1 100% | 226.3 MiB/s |  13.4 MiB |  00m00s
[151/172] Installing debugedit-0:5.2-3. 100% |  17.4 MiB/s | 321.2 KiB |  00m00s
[152/172] Installing rpm-build-libs-0:6 100% | 129.4 MiB/s | 265.0 KiB |  00m00s
[153/172] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[154/172] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[155/172] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[156/172] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.1 KiB |  00m00s
[157/172] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[158/172] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[159/172] Installing gap-srpm-macros-0: 100% |   0.0   B/s |   2.7 KiB |  00m00s
[160/172] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[161/172] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[162/172] Installing rpm-build-0:6.0.1- 100% |  28.3 MiB/s | 608.1 KiB |  00m00s
[163/172] Installing pyproject-srpm-mac 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[164/172] Installing redhat-rpm-config- 100% |  61.6 MiB/s | 189.1 KiB |  00m00s
[165/172] Installing forge-srpm-macros- 100% |  39.3 MiB/s |  40.3 KiB |  00m00s
[166/172] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[167/172] Installing go-srpm-macros-0:3 100% |  61.6 MiB/s |  63.0 KiB |  00m00s
[168/172] Installing python-srpm-macros 100% |  25.8 MiB/s |  52.8 KiB |  00m00s
[169/172] Installing util-linux-0:2.41. 100% | 124.8 MiB/s |   6.9 MiB |  00m00s
[170/172] Installing shadow-utils-2:4.1 100% |  97.7 MiB/s |   4.5 MiB |  00m00s
[171/172] Installing which-0:2.23-3.fc4 100% |   6.8 MiB/s | 125.6 KiB |  00m00s
[172/172] Installing info-0:7.2-6.fc43. 100% | 184.4 KiB/s | 422.0 KiB |  00m02s
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.6.0-2.fc43.aarch64
alternatives-1.33-3.fc43.aarch64
ansible-srpm-macros-1-18.1.fc43.noarch
audit-libs-4.1.2-2.fc43.aarch64
bash-5.3.0-2.fc43.aarch64
binutils-2.45.1-4.fc43.aarch64
build-reproducibility-srpm-macros-0.6.0-2.fc43.noarch
bzip2-1.0.8-21.fc43.aarch64
bzip2-libs-1.0.8-21.fc43.aarch64
ca-certificates-2025.2.80_v9.0.304-1.1.fc43.noarch
coreutils-9.7-7.fc43.aarch64
coreutils-common-9.7-7.fc43.aarch64
cpio-2.15-6.fc43.aarch64
crypto-policies-20251125-1.git63291f8.fc43.noarch
curl-8.15.0-5.fc43.aarch64
cyrus-sasl-lib-2.1.28-33.fc43.aarch64
debugedit-5.2-3.fc43.aarch64
diffutils-3.12-3.fc43.aarch64
dwz-0.16-2.fc43.aarch64
ed-1.22.2-1.fc43.aarch64
efi-srpm-macros-6-4.fc43.noarch
elfutils-0.194-1.fc43.aarch64
elfutils-debuginfod-client-0.194-1.fc43.aarch64
elfutils-default-yama-scope-0.194-1.fc43.noarch
elfutils-libelf-0.194-1.fc43.aarch64
elfutils-libs-0.194-1.fc43.aarch64
fedora-gpg-keys-43-1.noarch
fedora-release-43-25.noarch
fedora-release-common-43-25.noarch
fedora-release-identity-basic-43-25.noarch
fedora-repos-43-1.noarch
file-5.46-8.fc43.aarch64
file-libs-5.46-8.fc43.aarch64
filesystem-3.18-50.fc43.aarch64
filesystem-srpm-macros-3.18-50.fc43.noarch
findutils-4.10.0-6.fc43.aarch64
fonts-srpm-macros-2.0.5-23.fc43.noarch
forge-srpm-macros-0.4.0-3.fc43.noarch
fpc-srpm-macros-1.3-15.fc43.noarch
gap-srpm-macros-2-1.fc43.noarch
gawk-5.3.2-2.fc43.aarch64
gdb-minimal-17.1-1.fc43.aarch64
gdbm-libs-1.23-10.fc43.aarch64
ghc-srpm-macros-1.9.2-3.fc43.noarch
glibc-2.42-9.fc43.aarch64
glibc-common-2.42-9.fc43.aarch64
glibc-gconv-extra-2.42-9.fc43.aarch64
glibc-minimal-langpack-2.42-9.fc43.aarch64
gmp-6.3.0-4.fc43.aarch64
gnat-srpm-macros-7-1.fc43.noarch
gnulib-l10n-20241231-1.fc43.noarch
gnupg2-2.4.9-4.fc43.aarch64
gnupg2-dirmngr-2.4.9-4.fc43.aarch64
gnupg2-gpg-agent-2.4.9-4.fc43.aarch64
gnupg2-gpgconf-2.4.9-4.fc43.aarch64
gnupg2-keyboxd-2.4.9-4.fc43.aarch64
gnupg2-verify-2.4.9-4.fc43.aarch64
gnutls-3.8.11-5.fc43.aarch64
go-srpm-macros-3.8.0-1.fc43.noarch
gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf
gpgverify-2.2-3.fc43.noarch
grep-3.12-2.fc43.aarch64
gzip-1.13-4.fc43.aarch64
ima-evm-utils-libs-1.6.2-6.fc43.aarch64
info-7.2-6.fc43.aarch64
jansson-2.14-3.fc43.aarch64
java-srpm-macros-1-7.fc43.noarch
json-c-0.18-7.fc43.aarch64
kernel-srpm-macros-1.0-27.fc43.noarch
keyutils-libs-1.6.3-6.fc43.aarch64
krb5-libs-1.21.3-7.fc43.aarch64
libacl-2.3.2-4.fc43.aarch64
libarchive-3.8.4-1.fc43.aarch64
libassuan-2.5.7-4.fc43.aarch64
libattr-2.5.2-6.fc43.aarch64
libblkid-2.41.3-7.fc43.aarch64
libbrotli-1.2.0-1.fc43.aarch64
libcap-2.76-3.fc43.aarch64
libcap-ng-0.8.5-8.fc43.aarch64
libcom_err-1.47.3-2.fc43.aarch64
libcurl-8.15.0-5.fc43.aarch64
libeconf-0.7.9-2.fc43.aarch64
libevent-2.1.12-16.fc43.aarch64
libfdisk-2.41.3-7.fc43.aarch64
libffi-3.5.2-1.fc43.aarch64
libfsverity-1.6-3.fc43.aarch64
libgcc-15.2.1-5.fc43.aarch64
libgcrypt-1.11.1-3.fc43.aarch64
libgomp-15.2.1-5.fc43.aarch64
libgpg-error-1.55-2.fc43.aarch64
libidn2-2.3.8-2.fc43.aarch64
libksba-1.6.7-4.fc43.aarch64
liblastlog2-2.41.3-7.fc43.aarch64
libmount-2.41.3-7.fc43.aarch64
libnghttp2-1.66.0-2.fc43.aarch64
libpkgconf-2.3.0-3.fc43.aarch64
libpsl-0.21.5-6.fc43.aarch64
libselinux-3.9-5.fc43.aarch64
libsemanage-3.9-4.fc43.aarch64
libsepol-3.9-2.fc43.aarch64
libsmartcols-2.41.3-7.fc43.aarch64
libssh-0.11.3-1.fc43.aarch64
libssh-config-0.11.3-1.fc43.noarch
libstdc++-15.2.1-5.fc43.aarch64
libtasn1-4.20.0-2.fc43.aarch64
libtool-ltdl-2.5.4-8.fc43.aarch64
libunistring-1.1-10.fc43.aarch64
libusb1-1.0.29-4.fc43.aarch64
libuuid-2.41.3-7.fc43.aarch64
libverto-0.3.2-11.fc43.aarch64
libxcrypt-4.5.2-1.fc43.aarch64
libxml2-2.12.10-5.fc43.aarch64
libzstd-1.5.7-2.fc43.aarch64
lua-libs-5.4.8-4.fc43.aarch64
lua-srpm-macros-1-16.fc43.noarch
lz4-libs-1.10.0-3.fc43.aarch64
mpfr-4.2.2-2.fc43.aarch64
ncurses-base-6.5-7.20250614.fc43.noarch
ncurses-libs-6.5-7.20250614.fc43.aarch64
nettle-3.10.1-2.fc43.aarch64
npth-1.8-3.fc43.aarch64
ocaml-srpm-macros-11-2.fc43.noarch
openblas-srpm-macros-2-20.fc43.noarch
openldap-2.6.10-4.fc43.aarch64
openssl-libs-3.5.4-1.fc43.aarch64
p11-kit-0.25.8-1.fc43.aarch64
p11-kit-trust-0.25.8-1.fc43.aarch64
package-notes-srpm-macros-0.5-14.fc43.noarch
pam-libs-1.7.1-4.fc43.aarch64
patch-2.8-2.fc43.aarch64
pcre2-10.47-1.fc43.aarch64
pcre2-syntax-10.47-1.fc43.noarch
perl-srpm-macros-1-60.fc43.noarch
pkgconf-2.3.0-3.fc43.aarch64
pkgconf-m4-2.3.0-3.fc43.noarch
pkgconf-pkg-config-2.3.0-3.fc43.aarch64
popt-1.19-9.fc43.aarch64
publicsuffix-list-dafsa-20260116-1.fc43.noarch
pyproject-srpm-macros-1.18.6-1.fc43.noarch
python-srpm-macros-3.14-5.fc43.noarch
qt5-srpm-macros-5.15.18-1.fc43.noarch
qt6-srpm-macros-6.10.1-1.fc43.noarch
readline-8.3-2.fc43.aarch64
redhat-rpm-config-343-11.fc43.noarch
rpm-6.0.1-1.fc43.aarch64
rpm-build-6.0.1-1.fc43.aarch64
rpm-build-libs-6.0.1-1.fc43.aarch64
rpm-libs-6.0.1-1.fc43.aarch64
rpm-sequoia-1.10.0-1.fc43.aarch64
rpm-sign-libs-6.0.1-1.fc43.aarch64
rust-srpm-macros-28.4-1.fc43.noarch
sed-4.9-5.fc43.aarch64
setup-2.15.0-26.fc43.noarch
shadow-utils-4.18.0-3.fc43.aarch64
sqlite-libs-3.50.2-2.fc43.aarch64
systemd-libs-258.3-2.fc43.aarch64
systemd-standalone-sysusers-258.3-2.fc43.aarch64
tar-1.35-6.fc43.aarch64
tpm2-tss-4.1.3-8.fc43.aarch64
tree-sitter-srpm-macros-0.4.2-1.fc43.noarch
unzip-6.0-67.fc43.aarch64
util-linux-2.41.3-7.fc43.aarch64
util-linux-core-2.41.3-7.fc43.aarch64
which-2.23-3.fc43.aarch64
xxhash-libs-0.8.3-3.fc43.aarch64
xz-5.8.1-4.fc43.aarch64
xz-libs-5.8.1-4.fc43.aarch64
zig-srpm-macros-1-5.fc43.noarch
zip-3.0-44.fc43.aarch64
zlib-ng-compat-2.3.2-2.fc43.aarch64
zstd-1.5.7-2.fc43.aarch64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1769040000
Wrote: /builddir/build/SRPMS/bcftools-1.23-1.fc43.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-43-aarch64-1769501916.045769/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-4bbhvm4t/bcftools/bcftools.spec) Config(child) 0 minutes 21 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/bcftools-1.23-1.fc43.src.rpm)  Config(fedora-43-aarch64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-bootstrap-1769501916.045769/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-43-aarch64-bootstrap-1769501916.045769/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-43-aarch64-1769501916.045769/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc43.aarch64
  rpm-sequoia-1.10.0-1.fc43.aarch64
  dnf5-5.2.17.0-2.fc43.aarch64
  dnf5-plugins-5.2.17.0-2.fc43.aarch64
Finish: chroot init
Start: build phase for bcftools-1.23-1.fc43.src.rpm
Start: build setup for bcftools-1.23-1.fc43.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1769040000
Wrote: /builddir/build/SRPMS/bcftools-1.23-1.fc43.src.rpm
Updating and loading repositories:
 Copr repository                        100% | 108.4 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |  24.7 KiB/s |  13.7 KiB |  00m01s
 updates                                100% |  47.6 KiB/s |  13.6 KiB |  00m00s
Repositories loaded.
Package                   Arch    Version              Repository      Size
Installing:
 autoconf                 noarch  2.72-7.fc43          fedora       2.8 MiB
 automake                 noarch  1.18.1-2.fc43        fedora       1.8 MiB
 gcc                      aarch64 15.2.1-5.fc43        updates     99.6 MiB
 gsl-devel                aarch64 2.8-2.fc43           fedora       1.6 MiB
 htslib-devel             aarch64 1.23-1.fc43          copr_base  449.9 KiB
 htslib-tools             aarch64 1.23-1.fc43          copr_base    3.5 MiB
 make                     aarch64 1:4.4.1-11.fc43      fedora       1.8 MiB
 perl-ExtUtils-Embed      noarch  1.35-520.fc43        fedora      15.6 KiB
 perl-File-Temp           noarch  1:0.231.100-520.fc43 fedora     162.3 KiB
 perl-FindBin             noarch  1.54-520.fc43        fedora       6.8 KiB
 perl-Getopt-Long         noarch  1:2.58-520.fc43      fedora     144.5 KiB
 perl-interpreter         aarch64 4:5.42.0-520.fc43    fedora     174.6 KiB
 zlib-ng-compat-devel     aarch64 2.3.2-2.fc43         updates    107.0 KiB
Installing dependencies:
 annobin-docs             noarch  12.99-1.fc43         fedora      98.9 KiB
 annobin-plugin-gcc       aarch64 12.99-1.fc43         fedora       1.0 MiB
 cmake-filesystem         aarch64 3.31.10-3.fc43       updates      0.0   B
 cpp                      aarch64 15.2.1-5.fc43        updates     35.5 MiB
 emacs-filesystem         noarch  1:30.0-5.fc43        fedora       0.0   B
 expat                    aarch64 2.7.3-1.fc43         updates    361.0 KiB
 gcc-plugin-annobin       aarch64 15.2.1-5.fc43        updates     69.2 KiB
 gettext                  aarch64 0.25.1-2.fc43        fedora      13.6 MiB
 gettext-common-devel     noarch  0.25.1-2.fc43        fedora     592.5 KiB
 gettext-devel            aarch64 0.25.1-2.fc43        fedora       1.3 MiB
 gettext-envsubst         aarch64 0.25.1-2.fc43        fedora     106.7 KiB
 gettext-libs             aarch64 0.25.1-2.fc43        fedora       2.3 MiB
 gettext-runtime          aarch64 0.25.1-2.fc43        fedora     508.1 KiB
 glibc-devel              aarch64 2.42-9.fc43          updates      2.2 MiB
 groff-base               aarch64 1.23.0-11.fc43       updates      4.2 MiB
 gsl                      aarch64 2.8-2.fc43           fedora       3.4 MiB
 htslib                   aarch64 1.23-1.fc43          copr_base    1.3 MiB
 kernel-headers           aarch64 6.18.3-200.fc43      updates      6.7 MiB
 libasan                  aarch64 15.2.1-5.fc43        updates      1.5 MiB
 libatomic                aarch64 15.2.1-5.fc43        updates     68.8 KiB
 libmpc                   aarch64 1.3.1-8.fc43         fedora     152.7 KiB
 libtextstyle             aarch64 0.25.1-2.fc43        fedora     199.2 KiB
 libubsan                 aarch64 15.2.1-5.fc43        updates    475.6 KiB
 libxcrypt-devel          aarch64 4.5.2-1.fc43         updates     31.1 KiB
 m4                       aarch64 1.4.20-2.fc43        fedora     859.3 KiB
 mpdecimal                aarch64 4.0.1-2.fc43         fedora     281.2 KiB
 ncurses                  aarch64 6.5-7.20250614.fc43  fedora     893.6 KiB
 perl-AutoLoader          noarch  5.74-520.fc43        fedora      20.6 KiB
 perl-AutoSplit           noarch  5.74-520.fc43        fedora      23.1 KiB
 perl-B                   aarch64 1.89-520.fc43        fedora     545.4 KiB
 perl-Benchmark           noarch  1.27-520.fc43        fedora      36.4 KiB
 perl-Carp                noarch  1.54-520.fc43        fedora      46.6 KiB
 perl-Class-Struct        noarch  0.68-520.fc43        fedora      25.4 KiB
 perl-Data-Dumper         aarch64 2.191-521.fc43       fedora     135.7 KiB
 perl-Devel-PPPort        aarch64 3.73-521.fc43        fedora     917.9 KiB
 perl-Digest              noarch  1.20-520.fc43        fedora      35.3 KiB
 perl-Digest-MD5          aarch64 2.59-520.fc43        fedora     103.7 KiB
 perl-DynaLoader          aarch64 1.57-520.fc43        fedora      32.1 KiB
 perl-Encode              aarch64 4:3.21-520.fc43      fedora       4.8 MiB
 perl-Errno               aarch64 1.38-520.fc43        fedora       8.4 KiB
 perl-Exporter            noarch  5.79-520.fc43        fedora      54.3 KiB
 perl-ExtUtils-Command    noarch  2:7.76-521.fc43      fedora       9.6 KiB
 perl-ExtUtils-Constant   noarch  0.25-520.fc43        fedora      85.9 KiB
 perl-ExtUtils-Install    noarch  2.22-520.fc43        fedora      85.5 KiB
 perl-ExtUtils-MakeMaker  noarch  2:7.76-521.fc43      fedora     739.7 KiB
 perl-ExtUtils-Manifest   noarch  1:1.75-520.fc43      fedora      84.8 KiB
 perl-ExtUtils-ParseXS    noarch  1:3.58-2.fc43        fedora     539.6 KiB
 perl-Fcntl               aarch64 1.20-520.fc43        fedora      92.8 KiB
 perl-File-Basename       noarch  2.86-520.fc43        fedora      14.0 KiB
 perl-File-Compare        noarch  1.100.800-520.fc43   fedora       5.6 KiB
 perl-File-Copy           noarch  2.41-520.fc43        fedora      19.7 KiB
 perl-File-Find           noarch  1.44-520.fc43        fedora      42.0 KiB
 perl-File-Path           noarch  2.18-520.fc43        fedora      63.5 KiB
 perl-File-stat           noarch  1.14-520.fc43        fedora      12.5 KiB
 perl-FileHandle          noarch  2.05-520.fc43        fedora       9.4 KiB
 perl-Getopt-Std          noarch  1.14-520.fc43        fedora      11.2 KiB
 perl-HTTP-Tiny           noarch  0.090-521.fc43       fedora     154.4 KiB
 perl-Hash-Util           aarch64 0.32-520.fc43        fedora      99.0 KiB
 perl-Hash-Util-FieldHash aarch64 1.27-520.fc43        fedora     106.6 KiB
 perl-IO                  aarch64 1.55-520.fc43        fedora     191.4 KiB
 perl-IO-Socket-IP        noarch  0.43-521.fc43        fedora     100.3 KiB
 perl-IO-Socket-SSL       noarch  2.095-2.fc43         fedora     714.5 KiB
 perl-IPC-Open3           noarch  1.24-520.fc43        fedora      27.7 KiB
 perl-MIME-Base32         noarch  1.303-24.fc43        fedora      30.7 KiB
 perl-MIME-Base64         aarch64 3.16-520.fc43        fedora      94.1 KiB
 perl-Net-SSLeay          aarch64 1.94-11.fc43         fedora       1.4 MiB
 perl-POSIX               aarch64 2.23-520.fc43        fedora     263.5 KiB
 perl-PathTools           aarch64 3.94-520.fc43        fedora     224.0 KiB
 perl-Pod-Escapes         noarch  1:1.07-520.fc43      fedora      24.9 KiB
 perl-Pod-Perldoc         noarch  3.28.01-521.fc43     fedora     163.7 KiB
 perl-Pod-Simple          noarch  1:3.47-3.fc43        fedora     565.3 KiB
 perl-Pod-Usage           noarch  4:2.05-520.fc43      fedora      86.3 KiB
 perl-Scalar-List-Utils   aarch64 5:1.70-1.fc43        fedora     152.9 KiB
 perl-SelectSaver         noarch  1.02-520.fc43        fedora       2.2 KiB
 perl-Socket              aarch64 4:2.040-2.fc43       fedora     144.3 KiB
 perl-Storable            aarch64 1:3.37-521.fc43      fedora     243.2 KiB
 perl-Symbol              noarch  1.09-520.fc43        fedora       6.8 KiB
 perl-Term-ANSIColor      noarch  5.01-521.fc43        fedora      97.5 KiB
 perl-Term-Cap            noarch  1.18-520.fc43        fedora      29.3 KiB
 perl-Test-Harness        noarch  1:3.52-4.fc43        fedora     560.8 KiB
 perl-Text-ParseWords     noarch  3.31-520.fc43        fedora      13.6 KiB
 perl-Text-Tabs+Wrap      noarch  2024.001-520.fc43    fedora      22.6 KiB
 perl-Thread-Queue        noarch  3.14-520.fc43        fedora      28.9 KiB
 perl-Time-Local          noarch  2:1.350-520.fc43     fedora      69.0 KiB
 perl-URI                 noarch  5.34-2.fc43          updates    268.0 KiB
 perl-base                noarch  2.27-520.fc43        fedora      12.6 KiB
 perl-constant            noarch  1.33-521.fc43        fedora      26.2 KiB
 perl-devel               aarch64 4:5.42.0-520.fc43    fedora       3.8 MiB
 perl-fields              noarch  2.27-520.fc43        fedora      11.9 KiB
 perl-if                  noarch  0.61.000-520.fc43    fedora       5.8 KiB
 perl-lib                 aarch64 0.65-520.fc43        fedora       8.5 KiB
 perl-libnet              noarch  3.15-521.fc43        fedora     289.4 KiB
 perl-libs                aarch64 4:5.42.0-520.fc43    fedora      11.6 MiB
 perl-locale              noarch  1.13-520.fc43        fedora       6.1 KiB
 perl-mro                 aarch64 1.29-520.fc43        fedora      81.6 KiB
 perl-overload            noarch  1.40-520.fc43        fedora      71.6 KiB
 perl-overloading         noarch  0.02-520.fc43        fedora       4.9 KiB
 perl-parent              noarch  1:0.244-520.fc43     fedora      10.3 KiB
 perl-podlators           noarch  1:6.0.2-520.fc43     fedora     317.5 KiB
 perl-threads             aarch64 1:2.43-520.fc43      fedora     135.1 KiB
 perl-threads-shared      aarch64 1.70-520.fc43        fedora     103.7 KiB
 perl-vars                noarch  1.05-520.fc43        fedora       3.9 KiB
 perl-version             aarch64 9:0.99.33-521.fc43   fedora     160.8 KiB
 python-pip-wheel         noarch  25.1.1-18.fc43       fedora       1.2 MiB
 python3                  aarch64 3.14.2-1.fc43        updates     84.8 KiB
 python3-libs             aarch64 3.14.2-1.fc43        updates     45.1 MiB
 python3-pyparsing        noarch  3.1.2-14.fc43        fedora       1.0 MiB
 systemtap-sdt-devel      aarch64 5.4-1.fc43           updates    184.0 KiB
 systemtap-sdt-dtrace     aarch64 5.4-1.fc43           updates    180.6 KiB
 tzdata                   noarch  2025c-1.fc43         updates      1.6 MiB

Transaction Summary:
 Installing:       123 packages

Total size of inbound packages is 84 MiB. Need to download 84 MiB.
After this operation, 270 MiB extra will be used (install 270 MiB, remove 0 B).
[  1/123] autoconf-0:2.72-7.fc43.noarch 100% |  45.1 MiB/s | 830.6 KiB |  00m00s
[  2/123] make-1:4.4.1-11.fc43.aarch64  100% | 113.7 MiB/s | 582.0 KiB |  00m00s
[  3/123] automake-0:1.18.1-2.fc43.noar 100% |  28.3 MiB/s | 723.5 KiB |  00m00s
[  4/123] perl-ExtUtils-Embed-0:1.35-52 100% |   8.6 MiB/s |  17.7 KiB |  00m00s
[  5/123] perl-File-Temp-1:0.231.100-52 100% |  14.4 MiB/s |  59.0 KiB |  00m00s
[  6/123] perl-FindBin-0:1.54-520.fc43. 100% |   6.9 MiB/s |  14.2 KiB |  00m00s
[  7/123] perl-Getopt-Long-1:2.58-520.f 100% |  62.1 MiB/s |  63.6 KiB |  00m00s
[  8/123] perl-interpreter-4:5.42.0-520 100% |  23.6 MiB/s |  72.4 KiB |  00m00s
[  9/123] htslib-devel-0:1.23-1.fc43.aa 100% |  13.1 MiB/s | 106.9 KiB |  00m00s
[ 10/123] htslib-tools-0:1.23-1.fc43.aa 100% |  90.0 MiB/s | 737.0 KiB |  00m00s
[ 11/123] zlib-ng-compat-devel-0:2.3.2- 100% |   3.1 MiB/s |  38.0 KiB |  00m00s
[ 12/123] emacs-filesystem-1:30.0-5.fc4 100% | 468.0 KiB/s |   7.5 KiB |  00m00s
[ 13/123] gettext-devel-0:0.25.1-2.fc43 100% |  30.5 MiB/s | 280.7 KiB |  00m00s
[ 14/123] gsl-devel-0:2.8-2.fc43.aarch6 100% |   6.7 MiB/s | 654.9 KiB |  00m00s
[ 15/123] m4-0:1.4.20-2.fc43.aarch64    100% |  46.4 MiB/s | 332.4 KiB |  00m00s
[ 16/123] perl-Carp-0:1.54-520.fc43.noa 100% |   5.6 MiB/s |  28.7 KiB |  00m00s
[ 17/123] perl-Data-Dumper-0:2.191-521. 100% |  10.7 MiB/s |  55.0 KiB |  00m00s
[ 18/123] perl-Class-Struct-0:0.68-520. 100% |   2.2 MiB/s |  22.1 KiB |  00m00s
[ 19/123] perl-Errno-0:1.38-520.fc43.aa 100% |   1.8 MiB/s |  14.9 KiB |  00m00s
[ 20/123] perl-Exporter-0:5.79-520.fc43 100% |   3.8 MiB/s |  30.9 KiB |  00m00s
[ 21/123] perl-File-Basename-0:2.86-520 100% |   3.4 MiB/s |  17.2 KiB |  00m00s
[ 22/123] gcc-0:15.2.1-5.fc43.aarch64   100% | 295.2 MiB/s |  36.3 MiB |  00m00s
[ 23/123] perl-File-Copy-0:2.41-520.fc4 100% | 592.0 KiB/s |  20.1 KiB |  00m00s
[ 24/123] perl-File-Compare-0:1.100.800 100% | 348.8 KiB/s |  13.3 KiB |  00m00s
[ 25/123] perl-File-stat-0:1.14-520.fc4 100% |  16.7 MiB/s |  17.1 KiB |  00m00s
[ 26/123] perl-File-Find-0:1.44-520.fc4 100% |  12.4 MiB/s |  25.3 KiB |  00m00s
[ 27/123] perl-IO-0:1.55-520.fc43.aarch 100% |  26.8 MiB/s |  82.2 KiB |  00m00s
[ 28/123] perl-POSIX-0:2.23-520.fc43.aa 100% |  47.6 MiB/s |  97.4 KiB |  00m00s
[ 29/123] perl-Text-ParseWords-0:3.31-5 100% |  16.0 MiB/s |  16.3 KiB |  00m00s
[ 30/123] perl-PathTools-0:3.94-520.fc4 100% |  28.4 MiB/s |  87.3 KiB |  00m00s
[ 31/123] perl-constant-0:1.33-521.fc43 100% |  22.2 MiB/s |  22.8 KiB |  00m00s
[ 32/123] perl-File-Path-0:2.18-520.fc4 100% |  17.1 MiB/s |  35.1 KiB |  00m00s
[ 33/123] perl-libs-4:5.42.0-520.fc43.a 100% | 277.9 MiB/s |   2.5 MiB |  00m00s
[ 34/123] perl-Thread-Queue-0:3.14-520. 100% |   2.6 MiB/s |  21.3 KiB |  00m00s
[ 35/123] perl-threads-1:2.43-520.fc43. 100% |   7.9 MiB/s |  56.6 KiB |  00m00s
[ 36/123] perl-Fcntl-0:1.20-520.fc43.aa 100% |   9.7 MiB/s |  29.7 KiB |  00m00s
[ 37/123] perl-devel-4:5.42.0-520.fc43. 100% | 108.0 MiB/s | 663.6 KiB |  00m00s
[ 38/123] perl-overload-0:1.40-520.fc43 100% |  44.5 MiB/s |  45.6 KiB |  00m00s
[ 39/123] perl-Scalar-List-Utils-5:1.70 100% |  17.8 MiB/s |  73.0 KiB |  00m00s
[ 40/123] perl-Pod-Usage-4:2.05-520.fc4 100% |  39.6 MiB/s |  40.5 KiB |  00m00s
[ 41/123] perl-parent-1:0.244-520.fc43. 100% |   7.2 MiB/s |  14.8 KiB |  00m00s
[ 42/123] perl-base-0:2.27-520.fc43.noa 100% |  15.8 MiB/s |  16.2 KiB |  00m00s
[ 43/123] libmpc-0:1.3.1-8.fc43.aarch64 100% |  34.7 MiB/s |  71.1 KiB |  00m00s
[ 44/123] htslib-0:1.23-1.fc43.aarch64  100% |  77.8 MiB/s | 557.8 KiB |  00m00s
[ 45/123] gettext-0:0.25.1-2.fc43.aarch 100% |  77.9 MiB/s |   1.6 MiB |  00m00s
[ 46/123] cpp-0:15.2.1-5.fc43.aarch64   100% | 286.5 MiB/s |  11.7 MiB |  00m00s
[ 47/123] gettext-common-devel-0:0.25.1 100% |  45.2 MiB/s | 601.7 KiB |  00m00s
[ 48/123] gettext-libs-0:0.25.1-2.fc43. 100% | 126.3 MiB/s | 776.1 KiB |  00m00s
[ 49/123] perl-B-0:1.89-520.fc43.aarch6 100% |  43.4 MiB/s | 177.6 KiB |  00m00s
[ 50/123] perl-Symbol-0:1.09-520.fc43.n 100% |  13.9 MiB/s |  14.2 KiB |  00m00s
[ 51/123] perl-SelectSaver-0:1.02-520.f 100% |   5.7 MiB/s |  11.7 KiB |  00m00s
[ 52/123] perl-Socket-4:2.040-2.fc43.aa 100% |  53.8 MiB/s |  55.0 KiB |  00m00s
[ 53/123] perl-locale-0:1.13-520.fc43.n 100% |  13.2 MiB/s |  13.5 KiB |  00m00s
[ 54/123] perl-DynaLoader-0:1.57-520.fc 100% |  25.4 MiB/s |  26.0 KiB |  00m00s
[ 55/123] perl-vars-0:1.05-520.fc43.noa 100% |  12.7 MiB/s |  13.0 KiB |  00m00s
[ 56/123] perl-threads-shared-0:1.70-52 100% |  10.7 MiB/s |  44.0 KiB |  00m00s
[ 57/123] perl-Encode-4:3.21-520.fc43.a 100% | 115.8 MiB/s |   1.0 MiB |  00m00s
[ 58/123] perl-ExtUtils-Constant-0:0.25 100% |  21.4 MiB/s |  43.8 KiB |  00m00s
[ 59/123] perl-ExtUtils-Install-0:2.22- 100% |  21.2 MiB/s |  43.4 KiB |  00m00s
[ 60/123] gsl-0:2.8-2.fc43.aarch64      100% |  12.7 MiB/s |   1.1 MiB |  00m00s
[ 61/123] perl-ExtUtils-ParseXS-1:3.58- 100% |  35.9 MiB/s | 220.7 KiB |  00m00s
[ 62/123] perl-Text-Tabs+Wrap-0:2024.00 100% |  10.6 MiB/s |  21.6 KiB |  00m00s
[ 63/123] perl-mro-0:1.29-520.fc43.aarc 100% |  14.4 MiB/s |  29.5 KiB |  00m00s
[ 64/123] perl-overloading-0:0.02-520.f 100% |   6.3 MiB/s |  12.9 KiB |  00m00s
[ 65/123] perl-Pod-Perldoc-0:3.28.01-52 100% |  41.2 MiB/s |  84.3 KiB |  00m00s
[ 66/123] perl-podlators-1:6.0.2-520.fc 100% |  62.7 MiB/s | 128.3 KiB |  00m00s
[ 67/123] gettext-runtime-0:0.25.1-2.fc 100% |  56.4 MiB/s | 115.5 KiB |  00m00s
[ 68/123] libtextstyle-0:0.25.1-2.fc43. 100% |  43.2 MiB/s |  88.5 KiB |  00m00s
[ 69/123] perl-if-0:0.61.000-520.fc43.n 100% |  13.7 MiB/s |  14.0 KiB |  00m00s
[ 70/123] perl-Getopt-Std-0:1.14-520.fc 100% |  15.3 MiB/s |  15.7 KiB |  00m00s
[ 71/123] perl-MIME-Base64-0:3.16-520.f 100% |  29.2 MiB/s |  29.9 KiB |  00m00s
[ 72/123] perl-Storable-1:3.37-521.fc43 100% |  46.8 MiB/s |  95.8 KiB |  00m00s
[ 73/123] perl-AutoSplit-0:5.74-520.fc4 100% |  10.6 MiB/s |  21.6 KiB |  00m00s
[ 74/123] perl-fields-0:2.27-520.fc43.n 100% |   5.2 MiB/s |  16.1 KiB |  00m00s
[ 75/123] perl-ExtUtils-MakeMaker-2:7.7 100% |  71.9 MiB/s | 294.6 KiB |  00m00s
[ 76/123] perl-HTTP-Tiny-0:0.090-521.fc 100% |  55.0 MiB/s |  56.3 KiB |  00m00s
[ 77/123] perl-IPC-Open3-0:1.24-520.fc4 100% |  23.4 MiB/s |  23.9 KiB |  00m00s
[ 78/123] perl-Term-ANSIColor-0:5.01-52 100% |  46.5 MiB/s |  47.6 KiB |  00m00s
[ 79/123] perl-Pod-Simple-1:3.47-3.fc43 100% |  71.6 MiB/s | 219.9 KiB |  00m00s
[ 80/123] perl-Term-Cap-0:1.18-520.fc43 100% |  21.4 MiB/s |  21.9 KiB |  00m00s
[ 81/123] gettext-envsubst-0:0.25.1-2.f 100% |  12.1 MiB/s |  37.3 KiB |  00m00s
[ 82/123] perl-Devel-PPPort-0:3.73-521. 100% |   4.7 MiB/s | 216.8 KiB |  00m00s
[ 83/123] perl-Test-Harness-1:3.52-4.fc 100% |  67.8 MiB/s | 277.7 KiB |  00m00s
[ 84/123] perl-lib-0:0.65-520.fc43.aarc 100% |  14.6 MiB/s |  14.9 KiB |  00m00s
[ 85/123] perl-version-9:0.99.33-521.fc 100% |  20.2 MiB/s |  62.2 KiB |  00m00s
[ 86/123] perl-Hash-Util-0:0.32-520.fc4 100% |  11.2 MiB/s |  34.5 KiB |  00m00s
[ 87/123] perl-IO-Socket-SSL-0:2.095-2. 100% |  75.4 MiB/s | 231.5 KiB |  00m00s
[ 88/123] perl-Net-SSLeay-0:1.94-11.fc4 100% |  92.0 MiB/s | 376.8 KiB |  00m00s
[ 89/123] perl-Time-Local-2:1.350-520.f 100% |  33.6 MiB/s |  34.4 KiB |  00m00s
[ 90/123] perl-Pod-Escapes-1:1.07-520.f 100% |   9.7 MiB/s |  19.8 KiB |  00m00s
[ 91/123] ncurses-0:6.5-7.20250614.fc43 100% | 138.2 MiB/s | 424.5 KiB |  00m00s
[ 92/123] perl-Benchmark-0:1.27-520.fc4 100% |  13.1 MiB/s |  26.8 KiB |  00m00s
[ 93/123] perl-Hash-Util-FieldHash-0:1. 100% |  19.0 MiB/s |  38.9 KiB |  00m00s
[ 94/123] perl-IO-Socket-IP-0:0.43-521. 100% |  41.1 MiB/s |  42.1 KiB |  00m00s
[ 95/123] perl-AutoLoader-0:5.74-520.fc 100% |  20.7 MiB/s |  21.2 KiB |  00m00s
[ 96/123] cmake-filesystem-0:3.31.10-3. 100% |  13.5 MiB/s |  13.8 KiB |  00m00s
[ 97/123] perl-ExtUtils-Manifest-1:1.75 100% | 723.5 KiB/s |  34.0 KiB |  00m00s
[ 98/123] glibc-devel-0:2.42-9.fc43.aar 100% | 182.7 MiB/s | 561.3 KiB |  00m00s
[ 99/123] libasan-0:15.2.1-5.fc43.aarch 100% | 164.3 MiB/s | 504.6 KiB |  00m00s
[100/123] libatomic-0:15.2.1-5.fc43.aar 100% |  23.1 MiB/s |  47.2 KiB |  00m00s
[101/123] libxcrypt-devel-0:4.5.2-1.fc4 100% |  29.2 MiB/s |  29.9 KiB |  00m00s
[102/123] libubsan-0:15.2.1-5.fc43.aarc 100% | 110.8 MiB/s | 226.8 KiB |  00m00s
[103/123] systemtap-sdt-devel-0:5.4-1.f 100% |  22.7 MiB/s |  69.8 KiB |  00m00s
[104/123] python3-pyparsing-0:3.1.2-14. 100% |  70.0 MiB/s | 286.9 KiB |  00m00s
[105/123] groff-base-0:1.23.0-11.fc43.a 100% | 214.4 MiB/s |   1.1 MiB |  00m00s
[106/123] perl-URI-0:5.34-2.fc43.noarch 100% |  72.9 MiB/s | 149.3 KiB |  00m00s
[107/123] perl-MIME-Base32-0:1.303-24.f 100% |   9.9 MiB/s |  20.4 KiB |  00m00s
[108/123] perl-libnet-0:3.15-521.fc43.n 100% |  62.7 MiB/s | 128.3 KiB |  00m00s
[109/123] perl-Digest-MD5-0:2.59-520.fc 100% |  35.0 MiB/s |  35.8 KiB |  00m00s
[110/123] perl-FileHandle-0:2.05-520.fc 100% |   7.6 MiB/s |  15.5 KiB |  00m00s
[111/123] perl-Digest-0:1.20-520.fc43.n 100% |  24.2 MiB/s |  24.8 KiB |  00m00s
[112/123] python3-0:3.14.2-1.fc43.aarch 100% |  27.3 MiB/s |  28.0 KiB |  00m00s
[113/123] perl-ExtUtils-Command-2:7.76- 100% | 151.7 KiB/s |  14.0 KiB |  00m00s
[114/123] mpdecimal-0:4.0.1-2.fc43.aarc 100% |   9.4 MiB/s |  95.8 KiB |  00m00s
[115/123] systemtap-sdt-dtrace-0:5.4-1. 100% |   1.3 MiB/s |  70.5 KiB |  00m00s
[116/123] python-pip-wheel-0:25.1.1-18. 100% |  75.3 MiB/s |   1.2 MiB |  00m00s
[117/123] python3-libs-0:3.14.2-1.fc43. 100% | 220.9 MiB/s |   9.7 MiB |  00m00s
[118/123] expat-0:2.7.3-1.fc43.aarch64  100% |   6.7 MiB/s | 116.1 KiB |  00m00s
[119/123] tzdata-0:2025c-1.fc43.noarch  100% |  58.1 MiB/s | 713.9 KiB |  00m00s
[120/123] kernel-headers-0:6.18.3-200.f 100% | 209.7 MiB/s |   1.7 MiB |  00m00s
[121/123] annobin-plugin-gcc-0:12.99-1. 100% |  97.3 MiB/s | 995.9 KiB |  00m00s
[122/123] annobin-docs-0:12.99-1.fc43.n 100% |  29.1 MiB/s |  89.5 KiB |  00m00s
[123/123] gcc-plugin-annobin-0:15.2.1-5 100% | 790.6 KiB/s |  59.3 KiB |  00m00s
--------------------------------------------------------------------------------
[123/123] Total                         100% | 169.8 MiB/s |  83.9 MiB |  00m00s
Running transaction
[  1/125] Verify package files          100% | 450.0   B/s | 123.0   B |  00m00s
[  2/125] Prepare transaction           100% |   1.6 KiB/s | 123.0   B |  00m00s
[  3/125] Installing libtextstyle-0:0.2 100% |  97.6 MiB/s | 199.9 KiB |  00m00s
[  4/125] Installing gettext-libs-0:0.2 100% | 285.7 MiB/s |   2.3 MiB |  00m00s
[  5/125] Installing htslib-0:1.23-1.fc 100% | 223.5 MiB/s |   1.3 MiB |  00m00s
[  6/125] Installing libmpc-0:1.3.1-8.f 100% |  75.3 MiB/s | 154.2 KiB |  00m00s
[  7/125] Installing cpp-0:15.2.1-5.fc4 100% | 266.7 MiB/s |  35.5 MiB |  00m00s
[  8/125] Installing annobin-docs-0:12. 100% |  32.6 MiB/s | 100.1 KiB |  00m00s
[  9/125] Installing kernel-headers-0:6 100% | 131.2 MiB/s |   6.8 MiB |  00m00s
[ 10/125] Installing glibc-devel-0:2.42 100% | 110.4 MiB/s |   2.3 MiB |  00m00s
[ 11/125] Installing libxcrypt-devel-0: 100% |   6.5 MiB/s |  33.4 KiB |  00m00s
[ 12/125] Installing tzdata-0:2025c-1.f 100% |  36.4 MiB/s |   1.9 MiB |  00m00s
[ 13/125] Installing expat-0:2.7.3-1.fc 100% |  18.7 MiB/s | 363.1 KiB |  00m00s
[ 14/125] Installing python-pip-wheel-0 100% | 622.6 MiB/s |   1.2 MiB |  00m00s
[ 15/125] Installing mpdecimal-0:4.0.1- 100% |  39.4 MiB/s | 282.7 KiB |  00m00s
[ 16/125] Installing python3-libs-0:3.1 100% | 246.0 MiB/s |  45.5 MiB |  00m00s
[ 17/125] Installing python3-0:3.14.2-1 100% |   4.7 MiB/s |  86.6 KiB |  00m00s
[ 18/125] Installing python3-pyparsing- 100% | 205.9 MiB/s |   1.0 MiB |  00m00s
[ 19/125] Installing systemtap-sdt-dtra 100% |   7.1 MiB/s | 181.9 KiB |  00m00s
[ 20/125] Installing groff-base-0:1.23. 100% |  93.3 MiB/s |   4.2 MiB |  00m00s
[ 21/125] Installing systemtap-sdt-deve 100% |  90.6 MiB/s | 185.5 KiB |  00m00s
[ 22/125] Installing libubsan-0:15.2.1- 100% | 232.6 MiB/s | 476.4 KiB |  00m00s
[ 23/125] Installing libatomic-0:15.2.1 100% |  68.0 MiB/s |  69.6 KiB |  00m00s
[ 24/125] Installing libasan-0:15.2.1-5 100% | 308.1 MiB/s |   1.5 MiB |  00m00s
[ 25/125] Installing cmake-filesystem-0 100% |   3.7 MiB/s |   7.6 KiB |  00m00s
[ 26/125] Installing ncurses-0:6.5-7.20 100% |  41.9 MiB/s | 900.2 KiB |  00m00s
[ 27/125] Installing perl-Digest-0:1.20 100% |  36.2 MiB/s |  37.1 KiB |  00m00s
[ 28/125] Installing perl-Digest-MD5-0: 100% | 103.2 MiB/s | 105.6 KiB |  00m00s
[ 29/125] Installing perl-FileHandle-0: 100% |   9.6 MiB/s |   9.8 KiB |  00m00s
[ 30/125] Installing perl-B-0:1.89-520. 100% | 178.6 MiB/s | 548.7 KiB |  00m00s
[ 31/125] Installing perl-libnet-0:3.15 100% |  95.9 MiB/s | 294.7 KiB |  00m00s
[ 32/125] Installing perl-MIME-Base32-0 100% |  31.4 MiB/s |  32.2 KiB |  00m00s
[ 33/125] Installing perl-Data-Dumper-0 100% |  67.2 MiB/s | 137.6 KiB |  00m00s
[ 34/125] Installing perl-URI-0:5.34-2. 100% |  68.8 MiB/s | 281.8 KiB |  00m00s
[ 35/125] Installing perl-AutoLoader-0: 100% |   0.0   B/s |  21.0 KiB |  00m00s
[ 36/125] Installing perl-IO-Socket-IP- 100% |  99.8 MiB/s | 102.2 KiB |  00m00s
[ 37/125] Installing perl-IO-Socket-SSL 100% | 175.4 MiB/s | 718.6 KiB |  00m00s
[ 38/125] Installing perl-Net-SSLeay-0: 100% | 179.1 MiB/s |   1.4 MiB |  00m00s
[ 39/125] Installing perl-Pod-Escapes-1 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 40/125] Installing perl-Time-Local-2: 100% |  68.9 MiB/s |  70.6 KiB |  00m00s
[ 41/125] Installing perl-if-0:0.61.000 100% |   0.0   B/s |   6.2 KiB |  00m00s
[ 42/125] Installing perl-Text-Tabs+Wra 100% |  23.3 MiB/s |  23.9 KiB |  00m00s
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Warning: skipped OpenPGP checks for 3 packages from repository: copr_base
Complete!
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1769040000
Wrote: /builddir/build/SRPMS/bcftools-1.23-1.fc43.src.rpm
Updating and loading repositories:
 Copr repository                        100% |  43.4 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |  91.8 KiB/s |  13.7 KiB |  00m00s
 updates                                100% | 143.4 KiB/s |  13.6 KiB |  00m00s
Repositories loaded.
Package "autoconf-2.72-7.fc43.noarch" is already installed.
Package "automake-1.18.1-2.fc43.noarch" is already installed.
Package "gcc-15.2.1-5.fc43.aarch64" is already installed.
Package "gsl-devel-2.8-2.fc43.aarch64" is already installed.
Package "htslib-devel-1.23-1.fc43.aarch64" is already installed.
Package "htslib-tools-1.23-1.fc43.aarch64" is already installed.
Package "make-1:4.4.1-11.fc43.aarch64" is already installed.
Package "perl-ExtUtils-Embed-1.35-520.fc43.noarch" is already installed.
Package "perl-File-Temp-1:0.231.100-520.fc43.noarch" is already installed.
Package "perl-FindBin-1.54-520.fc43.noarch" is already installed.
Package "perl-Getopt-Long-1:2.58-520.fc43.noarch" is already installed.
Package "perl-interpreter-4:5.42.0-520.fc43.aarch64" is already installed.
Package "zlib-ng-compat-devel-2.3.2-2.fc43.aarch64" is already installed.
Nothing to do.

Finish: build setup for bcftools-1.23-1.fc43.src.rpm
Start: rpmbuild bcftools-1.23-1.fc43.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1769040000
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.aqtDVp
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.HTYnM9
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ rm -rf bcftools-1.23
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bcftools-1.23.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bcftools-1.23
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (bcftools-1.23-perl-fix-stray-errors-ldflags.patch):'
Patch #0 (bcftools-1.23-perl-fix-stray-errors-ldflags.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file configure.ac
+ sed -i '1s|/usr/bin/env perl|/usr/bin/perl|' misc/color-chrs.pl misc/demo-flt.pl misc/run-roh.pl misc/vcfutils.pl misc/plot-vcfstats
+ sed -i '1s|/usr/bin/env python3\{0,1\}|/usr/bin/python3|' misc/gff2gff.py misc/guess-ploidy.py misc/plot-roh.py
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.kzYxX8
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.23
+ autoreconf -fiv
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force 
autoreconf: configure.ac: tracing
autoreconf: configure.ac: subdirectory $HTSDIR not present
autoreconf: configure.ac: not using Libtool
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: configure.ac: not needing autopoint
autoreconf: running: /usr/bin/autoconf --force
configure.ac:94: warning: _AC_CONFIG_SUBDIRS: you should use literals
./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:94: the top level
autoreconf: running: /usr/bin/autoheader --force
autoreconf: configure.ac: not using Automake
autoreconf: Leaving directory '.'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.23/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./htslib-1.23/config.guess
++ basename ./htslib-1.23/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./htslib-1.23/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './htslib-1.23/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.23/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./htslib-1.23/config.sub
++ basename ./htslib-1.23/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./htslib-1.23/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './htslib-1.23/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=aarch64-redhat-linux --host=aarch64-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  ' --prefix=/usr --with-htslib=system --enable-perl-filters --enable-libgsl '--with-bcf-plugin-path=/usr/local/libexec/bcftools:$(plugindir)'
checking for aarch64-redhat-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for gcc option to enable large file support... none needed
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking shared library type... plain .so
checking for library containing dlopen... none required
checking if the compiler accepts -rdynamic... yes
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for gsl/gsl_version.h... yes
checking for library containing cblas_dgemm... -lgslcblas
checking for gsl_multifit_gradient in -lgsl... yes
configure: removing -specs=...redhat-hardened... from Perl options
checking for library containing Perl_call_pv... -lperl
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
configure: License has been changed to GPL.

Linking against the GNU scientific library requires that the resulting
binary is licensed using the GNU General Public License.  In particular,
this means you will have to follow the terms of this license in order
to distribute binary copies.  For more information see the INSTALL file.

Text of the GNU General Public License can be found in the LICENSE file,
or at http://www.gnu.org/copyleft/gpl.html

Information on the GNU Scientific Library, including the rationale for
its choice of license can be found at https://www.gnu.org/software/gsl/

+ /usr/bin/make -O -j4 V=1 VERBOSE=1
echo '#define BCFTOOLS_VERSION "1.23"' > version.h
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o tabix.o tabix.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfindex.o vcfindex.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfisec.o vcfisec.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfquery.o vcfquery.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcffilter.o vcffilter.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfstats.o vcfstats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfsom.o vcfsom.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfgtcheck.o vcfgtcheck.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfview.o vcfview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfmerge.o vcfmerge.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfnorm.o vcfnorm.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfroh.o vcfroh.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfconcat.o vcfconcat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -c -o filter.o filter.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcmp.o vcmp.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o gvcf.o gvcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfcall.o vcfcall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o mcall.o mcall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfannotate.o vcfannotate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o reheader.o reheader.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o tsv2vcf.o tsv2vcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfhead.o vcfhead.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o HMM.o HMM.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfcnv.o vcfcnv.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfconvert.o vcfconvert.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o ploidy.o ploidy.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bin.o bin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o hclust.o hclust.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o version.o version.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o convert.o convert.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o consensus.o consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o smpl_ilist.o smpl_ilist.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o regidx.o regidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfbuf.o vcfbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o mpileup.o mpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf.o bam2bcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf_iaux.o bam2bcf_iaux.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf_indel.o bam2bcf_indel.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o read_consensus.o read_consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf_edlib.o bam2bcf_edlib.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam_sample.o bam_sample.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o cols.o cols.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o dist.o dist.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o extsort.o extsort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfsort.o vcfsort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o ccall.o ccall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o csq.o csq.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o em.o em.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o kmin.o kmin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o str_finder.o str_finder.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o abuf.o abuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o prob1.o prob1.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o edlib.o edlib.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o mpileup2/mpileup.o mpileup2/mpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o peakfit.o peakfit.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o polysomy.o polysomy.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o test/test-rbuf.o test/test-rbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o gff.o gff.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.   -DPLUGINPATH='"/usr/local/libexec/bcftools:/usr/libexec/bcftools"' -c -o vcfplugin.o vcfplugin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o test/test-regidx.o test/test-regidx.c
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/GTsubset.so version.c plugins/GTsubset.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/GTisec.so version.c plugins/GTisec.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/add-variantkey.so version.c plugins/add-variantkey.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/allele-length.so version.c plugins/allele-length.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/af-dist.so bin.c version.c plugins/af-dist.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/check-ploidy.so version.c plugins/check-ploidy.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/check-sparsity.so version.c plugins/check-sparsity.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/counts.so version.c plugins/counts.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/contrast.so version.c plugins/contrast.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fill-AN-AC.so version.c plugins/fill-AN-AC.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/color-chrs.so HMM.c version.c plugins/color-chrs.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/dosage.so version.c plugins/dosage.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/ad-bias.so convert.c version.c plugins/ad-bias.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fixploidy.so ploidy.c regidx.c version.c plugins/fixploidy.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fixref.so version.c plugins/fixref.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fill-tags.so version.c plugins/fill-tags.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/frameshifts.so version.c plugins/frameshifts.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/impute-info.so version.c plugins/impute-info.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/gvcfz.so version.c plugins/gvcfz.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/guess-ploidy.so version.c plugins/guess-ploidy.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/isecGT.so smpl_ilist.c version.c plugins/isecGT.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/indel-stats.so version.c plugins/indel-stats.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/missing2ref.so version.c plugins/missing2ref.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/mendelian2.so version.c plugins/mendelian2.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/parental-origin.so version.c plugins/parental-origin.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/prune.so version.c plugins/prune.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/remove-overlaps.so version.c plugins/remove-overlaps.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/scatter.so version.c plugins/scatter.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/setGT.so version.c plugins/setGT.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fill-from-fasta.so filter.c version.c plugins/fill-from-fasta.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/smpl-stats.so version.c plugins/smpl-stats.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/tag2tag.so version.c plugins/tag2tag.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/split.so version.c plugins/split.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/split-vep.so version.c plugins/split-vep.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/trio-switch-rate.so version.c plugins/trio-switch-rate.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/trio-stats.so version.c plugins/trio-stats.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/trio-dnm2.so version.c plugins/trio-dnm2.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/variant-distance.so version.c plugins/variant-distance.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/variantkey-hex.so version.c plugins/variantkey-hex.c 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.   -DUSE_GPL -c -o main.o main.c
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/test-rbuf test/test-rbuf.o -lz  
gcc  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/test-regidx test/test-regidx.o regidx.o -lhts -lpthread -lz  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/vrfs.so version.c plugins/vrfs.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/vcf2table.so version.c plugins/vcf2table.c 
gcc -rdynamic  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o vcfhead.o HMM.o consensus.o ploidy.o bin.o hclust.o version.o regidx.o smpl_ilist.o csq.o vcfbuf.o mpileup.o bam2bcf.o bam2bcf_indel.o bam2bcf_iaux.o bam2bcf_edlib.o read_consensus.o bam_sample.o vcfsort.o cols.o extsort.o dist.o abuf.o ccall.o em.o prob1.o kmin.o str_finder.o gff.o edlib.o mpileup2/mpileup.o polysomy.o peakfit.o vcfplugin.o -lhts -lm -lz   -lgsl -lgslcblas -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fstack-protector-strong -L/usr/local/lib -L/usr/lib64/perl5/CORE -lperl -lpthread -lresolv -ldl -lm -lcrypt -lutil -lc -lpthread
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.G0axTt
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ '[' /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
++ dirname /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/bcftools-1.23-build
+ mkdir /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.23
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/bcftools-1.23-build/BUILDROOT 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/bin /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/man/man1 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/libexec/bcftools
/usr/bin/install -p bcftools /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/bin
/usr/bin/install -p misc/color-chrs.pl misc/gff2gff misc/gff2gff.py misc/guess-ploidy.py misc/plot-vcfstats misc/plot-roh.py misc/roh-viz misc/run-roh.pl misc/vcfutils.pl misc/vrfs-variances /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/bin
/usr/bin/install -p -m 644 doc/bcftools.1 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/man/man1
/usr/bin/install -p plugins/*.so /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/libexec/bcftools
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.23-1.fc43 --unique-debug-suffix -1.23-1.fc43.aarch64 --unique-debug-src-base bcftools-1.23-1.fc43.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23
find-debuginfo: starting
Extracting debug info from 42 files
DWARF-compressing 42 files
sepdebugcrcfix: Updated 42 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bcftools-1.23-1.fc43.aarch64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/vrfs-variances from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/roh-viz from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/gff2gff from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
Scanned 20 directories and 231 files,
               processed 1 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/bcftools-1.23-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.KlRI2s
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.23
+ ldd bcftools
+ grep -E '/lib(64)?/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x0000ffffb8fa0000)
+ make test
./test/test-rbuf
Inserted 1-9 starting at offset 5:
  5  6  7  8  9  0  1  2  3
  1  2  3  4  5  6  7  8  9
4th is 4
Deleting 1-2:
  7  8  9  0  1  2  3
  3  4  5  6  7  8  9
Prepending 0-8:
  8  9  0  1  2  3  4  5  6  7
  8  7  6  5  4  3  2  1  0  3
Expanding:
  8  9 10 11 12 13 14 15 16 17
  8  7  6  5  4  3  2  1  0  3
./test/test-regidx
REF_PATH=: ./test/test.pl --plugins --exec bgzip= --exec tabix= --htsdir= ${TEST_OPTS:-}
./test/test.pl: module IO::Pty not found; skipping usage tests
test_usage:
	bcftools
test_tabix:
	tabix /tmp/WJnGXJMoxL/merge.a.vcf.gz 2:3199812-3199812
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/merge.a.bcf 2:3199812-3199812
.. ok

test_tabix:
	tabix /tmp/WJnGXJMoxL/merge.a.vcf.gz 1:3000151-3000151
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/merge.a.bcf 1:3000151-3000151
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/WJnGXJMoxL/large_chrom_csi_limit.bcf chr20
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/WJnGXJMoxL/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/WJnGXJMoxL/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/WJnGXJMoxL/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/WJnGXJMoxL/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/WJnGXJMoxL/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/WJnGXJMoxL/idx.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/WJnGXJMoxL/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/WJnGXJMoxL/idx.bcf.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/WJnGXJMoxL/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/WJnGXJMoxL/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/WJnGXJMoxL/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/WJnGXJMoxL/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/WJnGXJMoxL/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/WJnGXJMoxL/empty.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/WJnGXJMoxL/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/WJnGXJMoxL/empty.bcf.csi
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s - /tmp/WJnGXJMoxL/check.vcf.gz | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s - | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/misc/plot-vcfstats -m /tmp/WJnGXJMoxL/check.1.chk /tmp/WJnGXJMoxL/check.2.chk /tmp/WJnGXJMoxL/check.3.chk /tmp/WJnGXJMoxL/check.4.chk | grep -v 'plot-vcfstats' | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s -  /tmp/WJnGXJMoxL/stats.a.vcf.gz /tmp/WJnGXJMoxL/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s B  /tmp/WJnGXJMoxL/stats.a.vcf.gz /tmp/WJnGXJMoxL/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s -  /tmp/WJnGXJMoxL/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s - -i 'type="snp"'  /tmp/WJnGXJMoxL/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s -  /tmp/WJnGXJMoxL/stats.vaf.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -w 2 --no-version /tmp/WJnGXJMoxL/isec.match-id.1.1.vcf.gz /tmp/WJnGXJMoxL/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -w 2 -c id --no-version /tmp/WJnGXJMoxL/isec.match-id.1.1.vcf.gz /tmp/WJnGXJMoxL/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 /tmp/WJnGXJMoxL/isec.a.vcf.gz /tmp/WJnGXJMoxL/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -i"STRLEN(REF)==2" /tmp/WJnGXJMoxL/isec.a.vcf.gz /tmp/WJnGXJMoxL/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -c both /tmp/WJnGXJMoxL/isec.a.vcf.gz /tmp/WJnGXJMoxL/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -c any /tmp/WJnGXJMoxL/isec.a.vcf.gz /tmp/WJnGXJMoxL/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -C -c any /tmp/WJnGXJMoxL/isec.a.vcf.gz /tmp/WJnGXJMoxL/isec.b.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec --no-version   -T /tmp/WJnGXJMoxL/isec.tab.gz /tmp/WJnGXJMoxL/isec.a.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -Ob  -T /tmp/WJnGXJMoxL/isec.tab.gz /tmp/WJnGXJMoxL/isec.a.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/WJnGXJMoxL/isec-miss.1.1.vcf.gz /tmp/WJnGXJMoxL/isec-miss.1.2.vcf.gz /tmp/WJnGXJMoxL/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/isec-miss.1.regs.txt -n +1 /tmp/WJnGXJMoxL/isec-miss.1.1.vcf.gz /tmp/WJnGXJMoxL/isec-miss.1.2.vcf.gz /tmp/WJnGXJMoxL/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/WJnGXJMoxL/isec-miss.2.1.vcf.gz /tmp/WJnGXJMoxL/isec-miss.2.2.vcf.gz /tmp/WJnGXJMoxL/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/isec-miss.1.regs.txt -n +1 /tmp/WJnGXJMoxL/isec-miss.2.1.vcf.gz /tmp/WJnGXJMoxL/isec-miss.2.2.vcf.gz /tmp/WJnGXJMoxL/isec-miss.2.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.broken-gvcf.a.vcf.gz /tmp/WJnGXJMoxL/merge.broken-gvcf.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.broken-gvcf.a.vcf.gz /tmp/WJnGXJMoxL/merge.broken-gvcf.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.broken-gvcf.a.bcf /tmp/WJnGXJMoxL/merge.broken-gvcf.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.broken-gvcf.a.bcf /tmp/WJnGXJMoxL/merge.broken-gvcf.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.symbolic.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.symbolic.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.symbolic.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.symbolic.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.symbolic.1.a.bcf /tmp/WJnGXJMoxL/merge.symbolic.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.symbolic.1.a.bcf /tmp/WJnGXJMoxL/merge.symbolic.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/WJnGXJMoxL/merge.multiallelics.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/WJnGXJMoxL/merge.multiallelics.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/WJnGXJMoxL/merge.multiallelics.1.a.bcf /tmp/WJnGXJMoxL/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/WJnGXJMoxL/merge.multiallelics.1.a.bcf /tmp/WJnGXJMoxL/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/WJnGXJMoxL/merge.multiallelics.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/WJnGXJMoxL/merge.multiallelics.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/WJnGXJMoxL/merge.multiallelics.1.a.bcf /tmp/WJnGXJMoxL/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/WJnGXJMoxL/merge.multiallelics.1.a.bcf /tmp/WJnGXJMoxL/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/WJnGXJMoxL/merge.12.a.vcf.gz /tmp/WJnGXJMoxL/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/WJnGXJMoxL/merge.12.a.vcf.gz /tmp/WJnGXJMoxL/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/WJnGXJMoxL/merge.12.a.bcf /tmp/WJnGXJMoxL/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/WJnGXJMoxL/merge.12.a.bcf /tmp/WJnGXJMoxL/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/WJnGXJMoxL/merge.12.a.vcf.gz /tmp/WJnGXJMoxL/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/WJnGXJMoxL/merge.12.a.vcf.gz /tmp/WJnGXJMoxL/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/WJnGXJMoxL/merge.12.a.bcf /tmp/WJnGXJMoxL/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/WJnGXJMoxL/merge.12.a.bcf /tmp/WJnGXJMoxL/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.phased.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.phased.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.phased.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.phased.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.phased.1.a.bcf /tmp/WJnGXJMoxL/merge.phased.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.phased.1.a.bcf /tmp/WJnGXJMoxL/merge.phased.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.11.a.vcf.gz /tmp/WJnGXJMoxL/merge.11.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.11.a.vcf.gz /tmp/WJnGXJMoxL/merge.11.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.11.a.bcf /tmp/WJnGXJMoxL/merge.11.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.11.a.bcf /tmp/WJnGXJMoxL/merge.11.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AF:join /tmp/WJnGXJMoxL/merge.join.a.vcf.gz /tmp/WJnGXJMoxL/merge.join.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AF:join /tmp/WJnGXJMoxL/merge.join.a.vcf.gz /tmp/WJnGXJMoxL/merge.join.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AF:join /tmp/WJnGXJMoxL/merge.join.a.bcf /tmp/WJnGXJMoxL/merge.join.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AF:join /tmp/WJnGXJMoxL/merge.join.a.bcf /tmp/WJnGXJMoxL/merge.join.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-single /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-single /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-single /tmp/WJnGXJMoxL/merge.LPL.a.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-single /tmp/WJnGXJMoxL/merge.LPL.a.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 1 /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 1 /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 2 /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 2 /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 3 /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 3 /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 4 /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 4 /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 5 /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/WJnGXJMoxL/merge.LPL.a.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.b.vcf.gz /tmp/WJnGXJMoxL/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 5 /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/WJnGXJMoxL/merge.LPL.a.bcf /tmp/WJnGXJMoxL/merge.LPL.b.bcf /tmp/WJnGXJMoxL/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/WJnGXJMoxL/merge.a.vcf.gz /tmp/WJnGXJMoxL/merge.b.vcf.gz /tmp/WJnGXJMoxL/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/WJnGXJMoxL/merge.a.vcf.gz /tmp/WJnGXJMoxL/merge.b.vcf.gz /tmp/WJnGXJMoxL/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/WJnGXJMoxL/merge.a.bcf /tmp/WJnGXJMoxL/merge.b.bcf /tmp/WJnGXJMoxL/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/WJnGXJMoxL/merge.a.bcf /tmp/WJnGXJMoxL/merge.b.bcf /tmp/WJnGXJMoxL/merge.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -Fx /tmp/WJnGXJMoxL/merge.a.vcf.gz /tmp/WJnGXJMoxL/merge.b.vcf.gz /tmp/WJnGXJMoxL/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -Fx /tmp/WJnGXJMoxL/merge.a.vcf.gz /tmp/WJnGXJMoxL/merge.b.vcf.gz /tmp/WJnGXJMoxL/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -Fx /tmp/WJnGXJMoxL/merge.a.bcf /tmp/WJnGXJMoxL/merge.b.bcf /tmp/WJnGXJMoxL/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -Fx /tmp/WJnGXJMoxL/merge.a.bcf /tmp/WJnGXJMoxL/merge.b.bcf /tmp/WJnGXJMoxL/merge.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -0 /tmp/WJnGXJMoxL/merge.a.vcf.gz /tmp/WJnGXJMoxL/merge.b.vcf.gz /tmp/WJnGXJMoxL/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -0 /tmp/WJnGXJMoxL/merge.a.vcf.gz /tmp/WJnGXJMoxL/merge.b.vcf.gz /tmp/WJnGXJMoxL/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -0 /tmp/WJnGXJMoxL/merge.a.bcf /tmp/WJnGXJMoxL/merge.b.bcf /tmp/WJnGXJMoxL/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -0 /tmp/WJnGXJMoxL/merge.a.bcf /tmp/WJnGXJMoxL/merge.b.bcf /tmp/WJnGXJMoxL/merge.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m none /tmp/WJnGXJMoxL/merge.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m none /tmp/WJnGXJMoxL/merge.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m none /tmp/WJnGXJMoxL/merge.2.a.bcf /tmp/WJnGXJMoxL/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m none /tmp/WJnGXJMoxL/merge.2.a.bcf /tmp/WJnGXJMoxL/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m both /tmp/WJnGXJMoxL/merge.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m both /tmp/WJnGXJMoxL/merge.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m both /tmp/WJnGXJMoxL/merge.2.a.bcf /tmp/WJnGXJMoxL/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m both /tmp/WJnGXJMoxL/merge.2.a.bcf /tmp/WJnGXJMoxL/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m all /tmp/WJnGXJMoxL/merge.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m all /tmp/WJnGXJMoxL/merge.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m all /tmp/WJnGXJMoxL/merge.2.a.bcf /tmp/WJnGXJMoxL/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m all /tmp/WJnGXJMoxL/merge.2.a.bcf /tmp/WJnGXJMoxL/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/WJnGXJMoxL/merge.3.a.vcf.gz /tmp/WJnGXJMoxL/merge.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/WJnGXJMoxL/merge.3.a.vcf.gz /tmp/WJnGXJMoxL/merge.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/WJnGXJMoxL/merge.3.a.bcf /tmp/WJnGXJMoxL/merge.3.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/WJnGXJMoxL/merge.3.a.bcf /tmp/WJnGXJMoxL/merge.3.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m id /tmp/WJnGXJMoxL/merge.4.a.vcf.gz /tmp/WJnGXJMoxL/merge.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m id /tmp/WJnGXJMoxL/merge.4.a.vcf.gz /tmp/WJnGXJMoxL/merge.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m id /tmp/WJnGXJMoxL/merge.4.a.bcf /tmp/WJnGXJMoxL/merge.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m id /tmp/WJnGXJMoxL/merge.4.a.bcf /tmp/WJnGXJMoxL/merge.4.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/gvcf.merge.1.vcf.gz /tmp/WJnGXJMoxL/gvcf.merge.2.vcf.gz /tmp/WJnGXJMoxL/gvcf.merge.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/gvcf.merge.1.vcf.gz /tmp/WJnGXJMoxL/gvcf.merge.2.vcf.gz /tmp/WJnGXJMoxL/gvcf.merge.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/gvcf.merge.1.bcf /tmp/WJnGXJMoxL/gvcf.merge.2.bcf /tmp/WJnGXJMoxL/gvcf.merge.3.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/gvcf.merge.1.bcf /tmp/WJnGXJMoxL/gvcf.merge.2.bcf /tmp/WJnGXJMoxL/gvcf.merge.3.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -m both,* /tmp/WJnGXJMoxL/merge.gvcf.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -m both,* /tmp/WJnGXJMoxL/merge.gvcf.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -m both,** /tmp/WJnGXJMoxL/merge.gvcf.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -m both,** /tmp/WJnGXJMoxL/merge.gvcf.2.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -i SRC:join /tmp/WJnGXJMoxL/merge.gvcf.3.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -i SRC:join /tmp/WJnGXJMoxL/merge.gvcf.3.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.4.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.4.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.4.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.4.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.4.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.5.a.vcf.gz /tmp/WJnGXJMoxL/merge.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.5.a.vcf.gz /tmp/WJnGXJMoxL/merge.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.5.a.bcf /tmp/WJnGXJMoxL/merge.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.5.a.bcf /tmp/WJnGXJMoxL/merge.5.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.6.a.vcf.gz /tmp/WJnGXJMoxL/merge.6.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.6.a.vcf.gz /tmp/WJnGXJMoxL/merge.6.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.6.a.bcf /tmp/WJnGXJMoxL/merge.6.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.6.a.bcf /tmp/WJnGXJMoxL/merge.6.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.7.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.7.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.7.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.7.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.7.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.8.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.8.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.8.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.8.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.8.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/WJnGXJMoxL/merge.7.a.vcf.gz /tmp/WJnGXJMoxL/merge.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/WJnGXJMoxL/merge.7.a.vcf.gz /tmp/WJnGXJMoxL/merge.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/WJnGXJMoxL/merge.7.a.bcf /tmp/WJnGXJMoxL/merge.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/WJnGXJMoxL/merge.7.a.bcf /tmp/WJnGXJMoxL/merge.7.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/WJnGXJMoxL/merge.gvcf.9a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9c.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/WJnGXJMoxL/merge.gvcf.9a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9c.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/WJnGXJMoxL/merge.gvcf.9a.bcf /tmp/WJnGXJMoxL/merge.gvcf.9b.bcf /tmp/WJnGXJMoxL/merge.gvcf.9c.bcf /tmp/WJnGXJMoxL/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/WJnGXJMoxL/merge.gvcf.9a.bcf /tmp/WJnGXJMoxL/merge.gvcf.9b.bcf /tmp/WJnGXJMoxL/merge.gvcf.9c.bcf /tmp/WJnGXJMoxL/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/WJnGXJMoxL/merge.gvcf.9a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9c.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/WJnGXJMoxL/merge.gvcf.9a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9c.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/WJnGXJMoxL/merge.gvcf.9a.bcf /tmp/WJnGXJMoxL/merge.gvcf.9b.bcf /tmp/WJnGXJMoxL/merge.gvcf.9c.bcf /tmp/WJnGXJMoxL/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/WJnGXJMoxL/merge.gvcf.9a.bcf /tmp/WJnGXJMoxL/merge.gvcf.9b.bcf /tmp/WJnGXJMoxL/merge.gvcf.9c.bcf /tmp/WJnGXJMoxL/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/WJnGXJMoxL/merge.gvcf.9a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9c.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9d.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/WJnGXJMoxL/merge.gvcf.9a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9c.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9d.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/WJnGXJMoxL/merge.gvcf.9a.bcf /tmp/WJnGXJMoxL/merge.gvcf.9b.bcf /tmp/WJnGXJMoxL/merge.gvcf.9c.bcf /tmp/WJnGXJMoxL/merge.gvcf.9d.bcf /tmp/WJnGXJMoxL/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/WJnGXJMoxL/merge.gvcf.9a.bcf /tmp/WJnGXJMoxL/merge.gvcf.9b.bcf /tmp/WJnGXJMoxL/merge.gvcf.9c.bcf /tmp/WJnGXJMoxL/merge.gvcf.9d.bcf /tmp/WJnGXJMoxL/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/WJnGXJMoxL/merge.gvcf.9a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9c.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9d.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/WJnGXJMoxL/merge.gvcf.9a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9c.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9d.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/WJnGXJMoxL/merge.gvcf.9a.bcf /tmp/WJnGXJMoxL/merge.gvcf.9b.bcf /tmp/WJnGXJMoxL/merge.gvcf.9c.bcf /tmp/WJnGXJMoxL/merge.gvcf.9d.bcf /tmp/WJnGXJMoxL/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/WJnGXJMoxL/merge.gvcf.9a.bcf /tmp/WJnGXJMoxL/merge.gvcf.9b.bcf /tmp/WJnGXJMoxL/merge.gvcf.9c.bcf /tmp/WJnGXJMoxL/merge.gvcf.9d.bcf /tmp/WJnGXJMoxL/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.gvcf.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.gvcf.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.gvcf.10.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.gvcf.10.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/WJnGXJMoxL/merge.gvcf.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/WJnGXJMoxL/merge.gvcf.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/WJnGXJMoxL/merge.gvcf.10.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/WJnGXJMoxL/merge.gvcf.10.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/WJnGXJMoxL/merge.gvcf.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/WJnGXJMoxL/merge.gvcf.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/WJnGXJMoxL/merge.gvcf.10.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/WJnGXJMoxL/merge.gvcf.10.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/WJnGXJMoxL/merge.gvcf.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/WJnGXJMoxL/merge.gvcf.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/WJnGXJMoxL/merge.gvcf.10.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/WJnGXJMoxL/merge.gvcf.10.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.noidx.a.vcf.gz /tmp/WJnGXJMoxL/merge.noidx.b.vcf.gz /tmp/WJnGXJMoxL/merge.noidx.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.noidx.a.vcf.gz /tmp/WJnGXJMoxL/merge.noidx.b.vcf.gz /tmp/WJnGXJMoxL/merge.noidx.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.noidx.a.bcf /tmp/WJnGXJMoxL/merge.noidx.b.bcf /tmp/WJnGXJMoxL/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.noidx.a.bcf /tmp/WJnGXJMoxL/merge.noidx.b.bcf /tmp/WJnGXJMoxL/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --no-index /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.c.vcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --no-index /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.c.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --no-index /tmp/WJnGXJMoxL/merge.noidx.a.bcf /tmp/WJnGXJMoxL/merge.noidx.b.bcf /tmp/WJnGXJMoxL/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --no-index /tmp/WJnGXJMoxL/merge.noidx.a.bcf /tmp/WJnGXJMoxL/merge.noidx.b.bcf /tmp/WJnGXJMoxL/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.8.a.vcf.gz /tmp/WJnGXJMoxL/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.8.a.vcf.gz /tmp/WJnGXJMoxL/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.8.a.bcf /tmp/WJnGXJMoxL/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.8.a.bcf /tmp/WJnGXJMoxL/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/WJnGXJMoxL/merge.8.a.vcf.gz /tmp/WJnGXJMoxL/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/WJnGXJMoxL/merge.8.a.vcf.gz /tmp/WJnGXJMoxL/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/WJnGXJMoxL/merge.8.a.bcf /tmp/WJnGXJMoxL/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/WJnGXJMoxL/merge.8.a.bcf /tmp/WJnGXJMoxL/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.9.a.vcf.gz /tmp/WJnGXJMoxL/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.9.a.vcf.gz /tmp/WJnGXJMoxL/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/WJnGXJMoxL/merge.9.a.bcf /tmp/WJnGXJMoxL/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/WJnGXJMoxL/merge.9.a.bcf /tmp/WJnGXJMoxL/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/WJnGXJMoxL/merge.9.a.vcf.gz /tmp/WJnGXJMoxL/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/WJnGXJMoxL/merge.9.a.vcf.gz /tmp/WJnGXJMoxL/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/WJnGXJMoxL/merge.9.a.bcf /tmp/WJnGXJMoxL/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/WJnGXJMoxL/merge.9.a.bcf /tmp/WJnGXJMoxL/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/WJnGXJMoxL/merge.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/WJnGXJMoxL/merge.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/WJnGXJMoxL/merge.10.a.bcf /tmp/WJnGXJMoxL/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/WJnGXJMoxL/merge.10.a.bcf /tmp/WJnGXJMoxL/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m both /tmp/WJnGXJMoxL/merge.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m both /tmp/WJnGXJMoxL/merge.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m both /tmp/WJnGXJMoxL/merge.10.a.bcf /tmp/WJnGXJMoxL/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m both /tmp/WJnGXJMoxL/merge.10.a.bcf /tmp/WJnGXJMoxL/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m snp-ins-del /tmp/WJnGXJMoxL/merge.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m snp-ins-del /tmp/WJnGXJMoxL/merge.10.a.vcf.gz /tmp/WJnGXJMoxL/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m snp-ins-del /tmp/WJnGXJMoxL/merge.10.a.bcf /tmp/WJnGXJMoxL/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m snp-ins-del /tmp/WJnGXJMoxL/merge.10.a.bcf /tmp/WJnGXJMoxL/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.mrules.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.mrules.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.mrules.1.a.bcf /tmp/WJnGXJMoxL/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.mrules.1.a.bcf /tmp/WJnGXJMoxL/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/WJnGXJMoxL/merge.mrules.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/WJnGXJMoxL/merge.mrules.1.a.vcf.gz /tmp/WJnGXJMoxL/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/WJnGXJMoxL/merge.mrules.1.a.bcf /tmp/WJnGXJMoxL/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/WJnGXJMoxL/merge.mrules.1.a.bcf /tmp/WJnGXJMoxL/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.5.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.5.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.5.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.5.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - --merge none /tmp/WJnGXJMoxL/merge.gvcf.5.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/WJnGXJMoxL/merge.gvcf.5.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - --merge none /tmp/WJnGXJMoxL/merge.gvcf.5.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/WJnGXJMoxL/merge.gvcf.5.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.11.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.11.b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.11.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.11.a.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.11.b.vcf.gz /tmp/WJnGXJMoxL/merge.gvcf.11.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.11.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.11.b.bcf /tmp/WJnGXJMoxL/merge.gvcf.11.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/WJnGXJMoxL/merge.gvcf.11.a.bcf /tmp/WJnGXJMoxL/merge.gvcf.11.b.bcf /tmp/WJnGXJMoxL/merge.gvcf.11.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' /tmp/WJnGXJMoxL/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1' /tmp/WJnGXJMoxL/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"' /tmp/WJnGXJMoxL/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1' /tmp/WJnGXJMoxL/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]="."' /tmp/WJnGXJMoxL/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]~"\."' /tmp/WJnGXJMoxL/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!="."' /tmp/WJnGXJMoxL/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!~"\."' /tmp/WJnGXJMoxL/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER' /tmp/WJnGXJMoxL/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]' /tmp/WJnGXJMoxL/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]' /tmp/WJnGXJMoxL/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' /tmp/WJnGXJMoxL/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."' /tmp/WJnGXJMoxL/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"' /tmp/WJnGXJMoxL/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)' /tmp/WJnGXJMoxL/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)' /tmp/WJnGXJMoxL/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]' /tmp/WJnGXJMoxL/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]' /tmp/WJnGXJMoxL/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"' /tmp/WJnGXJMoxL/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"' /tmp/WJnGXJMoxL/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"' /tmp/WJnGXJMoxL/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.1.txt' /tmp/WJnGXJMoxL/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.1.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.2.txt' /tmp/WJnGXJMoxL/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.2.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%RSX\t%VKX\n' /tmp/WJnGXJMoxL/query.variantkey.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.variantkey.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%RSX\t%VKX\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRI\n' -i'XRI[*]>1111' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRI\n' -i'XRI[*]>1111'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRF\n' -i'XRF[*]=2e6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[2]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' /tmp/WJnGXJMoxL/view.vectors.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.vectors.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"' /tmp/WJnGXJMoxL/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"' /tmp/WJnGXJMoxL/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"' /tmp/WJnGXJMoxL/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"' /tmp/WJnGXJMoxL/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' /tmp/WJnGXJMoxL/query.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT="."'  -f'%POS %IINT\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT!="."' -f'%POS %IINT\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT!="."' -f'%POS %IINT\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT="."'  -f'%POS %IINT\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n' /tmp/WJnGXJMoxL/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n' /tmp/WJnGXJMoxL/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n' /tmp/WJnGXJMoxL/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n' /tmp/WJnGXJMoxL/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%LINE' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%LINE'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"' /tmp/WJnGXJMoxL/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"' /tmp/WJnGXJMoxL/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"' /tmp/WJnGXJMoxL/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"' /tmp/WJnGXJMoxL/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"' /tmp/WJnGXJMoxL/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/WJnGXJMoxL/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/WJnGXJMoxL/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n' /tmp/WJnGXJMoxL/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"' /tmp/WJnGXJMoxL/query.filter.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2' /tmp/WJnGXJMoxL/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."' /tmp/WJnGXJMoxL/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1' /tmp/WJnGXJMoxL/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"' /tmp/WJnGXJMoxL/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"' /tmp/WJnGXJMoxL/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1' /tmp/WJnGXJMoxL/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12' /tmp/WJnGXJMoxL/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"' /tmp/WJnGXJMoxL/query.filter.4.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.4.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.56.out' /tmp/WJnGXJMoxL/view.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/view.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.56.out'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01' /tmp/WJnGXJMoxL/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01' /tmp/WJnGXJMoxL/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01' /tmp/WJnGXJMoxL/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10' /tmp/WJnGXJMoxL/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210' /tmp/WJnGXJMoxL/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30' /tmp/WJnGXJMoxL/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2' /tmp/WJnGXJMoxL/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2' /tmp/WJnGXJMoxL/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"' /tmp/WJnGXJMoxL/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"' /tmp/WJnGXJMoxL/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."' /tmp/WJnGXJMoxL/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)' /tmp/WJnGXJMoxL/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)' /tmp/WJnGXJMoxL/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)' /tmp/WJnGXJMoxL/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)' /tmp/WJnGXJMoxL/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1' /tmp/WJnGXJMoxL/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1' /tmp/WJnGXJMoxL/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1' /tmp/WJnGXJMoxL/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1' /tmp/WJnGXJMoxL/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0' /tmp/WJnGXJMoxL/query.pbinom.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.pbinom.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904' /tmp/WJnGXJMoxL/query.filter.6.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.6.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6' /tmp/WJnGXJMoxL/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7' /tmp/WJnGXJMoxL/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2' /tmp/WJnGXJMoxL/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75' /tmp/WJnGXJMoxL/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2' /tmp/WJnGXJMoxL/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75' /tmp/WJnGXJMoxL/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2' /tmp/WJnGXJMoxL/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5' /tmp/WJnGXJMoxL/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1' /tmp/WJnGXJMoxL/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1' /tmp/WJnGXJMoxL/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]' /tmp/WJnGXJMoxL/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]' /tmp/WJnGXJMoxL/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5' /tmp/WJnGXJMoxL/query.filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2' /tmp/WJnGXJMoxL/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2' /tmp/WJnGXJMoxL/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n' /tmp/WJnGXJMoxL/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0 /tmp/WJnGXJMoxL/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3 /tmp/WJnGXJMoxL/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/WJnGXJMoxL/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/WJnGXJMoxL/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/WJnGXJMoxL/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/WJnGXJMoxL/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt /tmp/WJnGXJMoxL/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt /tmp/WJnGXJMoxL/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID~"s12"' /tmp/WJnGXJMoxL/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID~"s12"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="rs123"' /tmp/WJnGXJMoxL/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="rs123"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="abc"' /tmp/WJnGXJMoxL/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt' /tmp/WJnGXJMoxL/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!="abc"' /tmp/WJnGXJMoxL/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt' /tmp/WJnGXJMoxL/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%FILTER\n' /tmp/WJnGXJMoxL/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%FILTER\n' /tmp/WJnGXJMoxL/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A;B"' -f'%FILTER\n' /tmp/WJnGXJMoxL/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n' /tmp/WJnGXJMoxL/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n' /tmp/WJnGXJMoxL/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n' /tmp/WJnGXJMoxL/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'DP%10==2' -f'[ %DP]\n' /tmp/WJnGXJMoxL/filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'DP%10==2' -f'[ %DP]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n' /tmp/WJnGXJMoxL/filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]' /tmp/WJnGXJMoxL/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n' /tmp/WJnGXJMoxL/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n' /tmp/WJnGXJMoxL/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]' /tmp/WJnGXJMoxL/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n' /tmp/WJnGXJMoxL/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/WJnGXJMoxL/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/WJnGXJMoxL/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2' /tmp/WJnGXJMoxL/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2' /tmp/WJnGXJMoxL/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2'
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s /tmp/WJnGXJMoxL/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.check-ref.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s /tmp/WJnGXJMoxL/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.check-ref.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/WJnGXJMoxL/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/WJnGXJMoxL/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/WJnGXJMoxL/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/WJnGXJMoxL/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/WJnGXJMoxL/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/WJnGXJMoxL/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/WJnGXJMoxL/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/WJnGXJMoxL/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c e /tmp/WJnGXJMoxL/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c e /tmp/WJnGXJMoxL/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.breakend.1.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.breakend.1.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -S lex /tmp/WJnGXJMoxL/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -S lex /tmp/WJnGXJMoxL/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/WJnGXJMoxL/norm.join-missing-ploidy.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/WJnGXJMoxL/norm.join-missing-ploidy.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/WJnGXJMoxL/norm.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/WJnGXJMoxL/norm.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version  /tmp/WJnGXJMoxL/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version  /tmp/WJnGXJMoxL/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -cx /tmp/WJnGXJMoxL/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -cx /tmp/WJnGXJMoxL/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/WJnGXJMoxL/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/WJnGXJMoxL/norm.split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/WJnGXJMoxL/norm.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/WJnGXJMoxL/norm.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --force /tmp/WJnGXJMoxL/norm.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --force /tmp/WJnGXJMoxL/norm.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/WJnGXJMoxL/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/WJnGXJMoxL/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --keep-sum AD /tmp/WJnGXJMoxL/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --keep-sum AD /tmp/WJnGXJMoxL/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/WJnGXJMoxL/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/WJnGXJMoxL/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/WJnGXJMoxL/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/WJnGXJMoxL/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/WJnGXJMoxL/norm.merge.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/WJnGXJMoxL/norm.merge.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/WJnGXJMoxL/norm.merge.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/WJnGXJMoxL/norm.merge.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ -s /tmp/WJnGXJMoxL/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ -s /tmp/WJnGXJMoxL/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -Nc s /tmp/WJnGXJMoxL/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -Nc s /tmp/WJnGXJMoxL/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version /tmp/WJnGXJMoxL/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version /tmp/WJnGXJMoxL/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/WJnGXJMoxL/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d any /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d any /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/WJnGXJMoxL/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/WJnGXJMoxL/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/WJnGXJMoxL/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/WJnGXJMoxL/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/WJnGXJMoxL/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/WJnGXJMoxL/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/WJnGXJMoxL/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/WJnGXJMoxL/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.iupac.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/WJnGXJMoxL/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.iupac.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/WJnGXJMoxL/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/WJnGXJMoxL/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/WJnGXJMoxL/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/WJnGXJMoxL/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --force
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --force -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/WJnGXJMoxL/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/WJnGXJMoxL/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/WJnGXJMoxL/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/WJnGXJMoxL/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . /tmp/WJnGXJMoxL/atomize.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . /tmp/WJnGXJMoxL/atomize.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/WJnGXJMoxL/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/WJnGXJMoxL/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/WJnGXJMoxL/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/WJnGXJMoxL/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/WJnGXJMoxL/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/WJnGXJMoxL/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/WJnGXJMoxL/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/WJnGXJMoxL/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/WJnGXJMoxL/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/WJnGXJMoxL/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/WJnGXJMoxL/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/WJnGXJMoxL/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/WJnGXJMoxL/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/WJnGXJMoxL/norm.m-any.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/WJnGXJMoxL/norm.m-any.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/WJnGXJMoxL/norm.phased-split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/WJnGXJMoxL/norm.phased-split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/WJnGXJMoxL/norm.phased-join.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/WJnGXJMoxL/norm.phased-join.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/WJnGXJMoxL/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/WJnGXJMoxL/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/WJnGXJMoxL/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/WJnGXJMoxL/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/WJnGXJMoxL/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/WJnGXJMoxL/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.gff /tmp/WJnGXJMoxL/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.gff /tmp/WJnGXJMoxL/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/WJnGXJMoxL/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.atom-split-norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/WJnGXJMoxL/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.atom-split-norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/WJnGXJMoxL/norm.string-tags.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/WJnGXJMoxL/norm.string-tags.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +indels
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +indels -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -i 'type="snp"' /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -i 'type="snp"' /tmp/WJnGXJMoxL/norm.split.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/WJnGXJMoxL/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/WJnGXJMoxL/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/WJnGXJMoxL/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/WJnGXJMoxL/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/WJnGXJMoxL/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/WJnGXJMoxL/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/WJnGXJMoxL/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/WJnGXJMoxL/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -HA /tmp/WJnGXJMoxL/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -HAA /tmp/WJnGXJMoxL/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r 1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r 1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r 1:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r 1:1-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r 1:1,1:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r 1:1,1:2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r 1:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r 1:1-1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1} | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1}:1-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1}:1-1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1-1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1-1} | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1-1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1-1}:1-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1-1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1-1}:1-1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1-1}-2
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/weird-chr-names.vcf.gz -r {1:1-1}-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -aUc1 -C1 -s NA00002 -v snps /tmp/WJnGXJMoxL/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -aUc1 -C1 -s NA00002 -v snps /tmp/WJnGXJMoxL/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -f PASS -Xks NA00003 /tmp/WJnGXJMoxL/view.vcf.gz -r20,Y
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -f PASS -Xks NA00003 /tmp/WJnGXJMoxL/view.vcf.gz -r20,Y | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -xs NA00003 /tmp/WJnGXJMoxL/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -xs NA00003 /tmp/WJnGXJMoxL/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/WJnGXJMoxL/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/WJnGXJMoxL/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -p /tmp/WJnGXJMoxL/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -p /tmp/WJnGXJMoxL/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -P /tmp/WJnGXJMoxL/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -P /tmp/WJnGXJMoxL/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -hm2 -M2 -q0.3 -Q0.7 /tmp/WJnGXJMoxL/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -hm2 -M2 -q0.3 -Q0.7 /tmp/WJnGXJMoxL/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Hu /tmp/WJnGXJMoxL/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -GVsnps /tmp/WJnGXJMoxL/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -GVsnps /tmp/WJnGXJMoxL/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -ne 'INDEL=1 || PV4[0]<0.006' /tmp/WJnGXJMoxL/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -ne 'INDEL=1 || PV4[0]<0.006' /tmp/WJnGXJMoxL/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -s ^NA00003 /tmp/WJnGXJMoxL/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -s ^NA00003 /tmp/WJnGXJMoxL/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/WJnGXJMoxL/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/WJnGXJMoxL/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -G /tmp/WJnGXJMoxL/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -G /tmp/WJnGXJMoxL/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -HG /tmp/WJnGXJMoxL/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -a /tmp/WJnGXJMoxL/many.alleles.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -a /tmp/WJnGXJMoxL/many.alleles.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -asA /tmp/WJnGXJMoxL/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -asA /tmp/WJnGXJMoxL/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -asB /tmp/WJnGXJMoxL/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -asB /tmp/WJnGXJMoxL/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -asA /tmp/WJnGXJMoxL/view.vectors.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -asA /tmp/WJnGXJMoxL/view.vectors.2.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FGS[*:0]="AAAAAA"' /tmp/WJnGXJMoxL/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FGS[*:2]="C"' /tmp/WJnGXJMoxL/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FGS[*:4]="EE"' /tmp/WJnGXJMoxL/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FRS[*:1]="BB"' /tmp/WJnGXJMoxL/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'TXT0="text"' /tmp/WJnGXJMoxL/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.chrs.tab /tmp/WJnGXJMoxL/view.chrs.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.chrs.tab /tmp/WJnGXJMoxL/view.chrs.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'POS>=3062917' /tmp/WJnGXJMoxL/filter.2.vcf.gz 1:3062917-3157410
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'POS>=3062917' /tmp/WJnGXJMoxL/filter.2.vcf.gz 1:3062917-3157410 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r 1:10,1:12,1:10 /tmp/WJnGXJMoxL/idx.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r 1:1172777-1172804,1:1172806-1172808 /tmp/WJnGXJMoxL/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/idx.2.bed /tmp/WJnGXJMoxL/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/idx.3.bed /tmp/WJnGXJMoxL/idx.3.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/idx.4.bed /tmp/WJnGXJMoxL/idx.4.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ht 2 /tmp/WJnGXJMoxL/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ht 3 /tmp/WJnGXJMoxL/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 0 /tmp/WJnGXJMoxL/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 1 /tmp/WJnGXJMoxL/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 2 /tmp/WJnGXJMoxL/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 0 /tmp/WJnGXJMoxL/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 1 /tmp/WJnGXJMoxL/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 2 /tmp/WJnGXJMoxL/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 0 /tmp/WJnGXJMoxL/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 1 /tmp/WJnGXJMoxL/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 2 /tmp/WJnGXJMoxL/overlap.vcf.gz 
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.1.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.1.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.1.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.2.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.2.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.2.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.3.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.3.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.4.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.4.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.4.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.5.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.5.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.5.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -C5:nonmajor /tmp/WJnGXJMoxL/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -c6:nonmajor /tmp/WJnGXJMoxL/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -q0.3:major /tmp/WJnGXJMoxL/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i 'Gene.refGene=="RAD21L1"' /tmp/WJnGXJMoxL/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i 'Gene.refGene~"NOD"' /tmp/WJnGXJMoxL/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i 'LJB2_MutationTaster=="0.291000"' /tmp/WJnGXJMoxL/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -a /tmp/WJnGXJMoxL/view-a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt /tmp/WJnGXJMoxL/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt /tmp/WJnGXJMoxL/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt.gz /tmp/WJnGXJMoxL/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt.gz /tmp/WJnGXJMoxL/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 5 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 22 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 23 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -n 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -n 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -n 5 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 5 -n 5 < /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s0 /tmp/WJnGXJMoxL/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ob /tmp/WJnGXJMoxL/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s0
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s1 /tmp/WJnGXJMoxL/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ob /tmp/WJnGXJMoxL/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s1
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s2 -h2 /tmp/WJnGXJMoxL/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ob /tmp/WJnGXJMoxL/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s2 -h2
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s sample1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s sample1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mg0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mg0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.1.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/WJnGXJMoxL/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.2.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'ALT="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'ALT="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="A"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="A"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="RR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="RR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="RA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="RA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="AR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="AR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="AA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="AA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="aA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="aA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="HET"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="HET"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.7.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.7.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -m 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -Ob -m 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -m 1000 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -Ob -m 1000 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/regions.tab /tmp/WJnGXJMoxL/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/regions.tab
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/regions.tab /tmp/WJnGXJMoxL/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/WJnGXJMoxL/regions.tab.gz /tmp/WJnGXJMoxL/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/WJnGXJMoxL/regions.tab.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/WJnGXJMoxL/regions.tab.gz /tmp/WJnGXJMoxL/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/WJnGXJMoxL/regions.bed /tmp/WJnGXJMoxL/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/WJnGXJMoxL/regions.bed
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/WJnGXJMoxL/regions.bed /tmp/WJnGXJMoxL/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/WJnGXJMoxL/regions.bed.gz /tmp/WJnGXJMoxL/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/WJnGXJMoxL/regions.bed.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/WJnGXJMoxL/regions.bed.gz /tmp/WJnGXJMoxL/regions.vcf.gz
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/WJnGXJMoxL/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/WJnGXJMoxL/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/WJnGXJMoxL/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/WJnGXJMoxL/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x FORMAT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x FORMAT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots4.vcf.gz  -c +INFO /tmp/WJnGXJMoxL/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots4.vcf.gz  -c +INFO /tmp/WJnGXJMoxL/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots11.vcf.gz  -c FMT /tmp/WJnGXJMoxL/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots11.vcf.gz  -c FMT /tmp/WJnGXJMoxL/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/WJnGXJMoxL/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/WJnGXJMoxL/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate20.src.vcf.gz  -c  FMT/GT /tmp/WJnGXJMoxL/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate20.src.vcf.gz  -c  FMT/GT /tmp/WJnGXJMoxL/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate20.src.vcf.gz  -c +FMT/GT /tmp/WJnGXJMoxL/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate20.src.vcf.gz  -c +FMT/GT /tmp/WJnGXJMoxL/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate20.src.vcf.gz  -c -FMT/GT /tmp/WJnGXJMoxL/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate20.src.vcf.gz  -c -FMT/GT /tmp/WJnGXJMoxL/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   --rename-annots /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   --rename-annots /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/WJnGXJMoxL/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/WJnGXJMoxL/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate24.src.vcf.gz  -c XX /tmp/WJnGXJMoxL/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate24.src.vcf.gz  -c XX /tmp/WJnGXJMoxL/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots.id.vcf.gz  -c ALT /tmp/WJnGXJMoxL/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots.id.vcf.gz  -c ALT /tmp/WJnGXJMoxL/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots.id.vcf.gz  -c +ALT /tmp/WJnGXJMoxL/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots.id.vcf.gz  -c +ALT /tmp/WJnGXJMoxL/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/WJnGXJMoxL/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/WJnGXJMoxL/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/WJnGXJMoxL/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/WJnGXJMoxL/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/WJnGXJMoxL/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/WJnGXJMoxL/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/WJnGXJMoxL/checkploidy.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/WJnGXJMoxL/checkploidy.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/WJnGXJMoxL/checkploidy.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/WJnGXJMoxL/checkploidy.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/WJnGXJMoxL/checkploidy.2.vcf.gz -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/WJnGXJMoxL/checkploidy.2.bcf -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +missing2ref --no-version /tmp/WJnGXJMoxL/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +missing2ref --no-version /tmp/WJnGXJMoxL/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/plugin1.vcf.gz -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/plugin1.bcf -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.vcf.gz -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.bcf -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.2.vcf.gz -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.2.bcf -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.vcf.gz -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.bcf -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.vcf.gz -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.bcf -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.vcf.gz -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.bcf -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.vcf.gz -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.bcf -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.vcf.gz -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.bcf -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.vcf.gz -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.bcf -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.vcf.gz -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.3.bcf -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.4.bcf -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.4.bcf -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.5.vcf.gz -- -t a -n X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.5.bcf -- -t a -n X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.5.vcf.gz -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.5.bcf -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.6.vcf.gz -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.6.bcf -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.6.vcf.gz -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.6.bcf -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.6.vcf.gz -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/WJnGXJMoxL/setGT.6.bcf -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-AN-AC --no-version /tmp/WJnGXJMoxL/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-AN-AC --no-version /tmp/WJnGXJMoxL/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/WJnGXJMoxL/dosage.vcf.gz -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/WJnGXJMoxL/dosage.bcf -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/WJnGXJMoxL/dosage.vcf.gz -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/WJnGXJMoxL/dosage.bcf -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/WJnGXJMoxL/dosage.vcf.gz -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/WJnGXJMoxL/dosage.bcf -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixploidy --no-version /tmp/WJnGXJMoxL/fixploidy.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixploidy --no-version /tmp/WJnGXJMoxL/fixploidy.bcf -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/WJnGXJMoxL/view.PL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/WJnGXJMoxL/view.PL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/WJnGXJMoxL/view.GL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/WJnGXJMoxL/view.GL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/view.GL.vcf.gz -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/view.GL.bcf -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/view.GL.vcf.gz -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/view.GL.bcf -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/view.GP.vcf.gz -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/view.GP.bcf -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/tag2tag.LPL.1.bcf -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/tag2tag.LPL.1.bcf -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/WJnGXJMoxL/tag2tag.LPL.1.bcf -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +add-variantkey /tmp/WJnGXJMoxL/query.variantkey.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +add-variantkey /tmp/WJnGXJMoxL/query.variantkey.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variantkey-hex /tmp/WJnGXJMoxL/query.variantkey.vcf.gz test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variantkey-hex /tmp/WJnGXJMoxL/query.variantkey.bcf test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +allele-length /tmp/WJnGXJMoxL/query.nucleotide.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +allele-length /tmp/WJnGXJMoxL/query.nucleotide.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/query.func.1.vcf.gz -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/query.func.1.bcf -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/merge.a.vcf.gz -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/merge.a.bcf -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/view.vcf.gz -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/view.bcf -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/view.vcf.gz -- -t AC -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/view.bcf -- -t AC -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/view.vcf.gz -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/view.bcf -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/many-alts.vcf.gz -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/many-alts.bcf -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-hemi.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-hemi.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-hemi.vcf.gz -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-hemi.bcf -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-hwe.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-hwe.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-hwe.vcf.gz -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-hwe.bcf -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-rw.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-rw.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AN0.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AN0.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-VAF.vcf.gz -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-VAF.bcf -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AD.vcf.gz -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AD.bcf -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AD.vcf.gz -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AD.bcf -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AD.vcf.gz -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/WJnGXJMoxL/fill-tags-AD.bcf -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.vcf.gz -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.bcf -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.vcf.gz -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.bcf -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.vcf.gz -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.bcf -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.vcf.gz -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.bcf -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.vcf.gz -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.bcf -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.vcf.gz -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.bcf -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.vcf.gz -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/WJnGXJMoxL/view.bcf -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-switch-rate /tmp/WJnGXJMoxL/trio.vcf.gz -- -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-switch-rate /tmp/WJnGXJMoxL/trio.bcf -- -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/WJnGXJMoxL/trio-stats.vcf.gz -a 1 -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/WJnGXJMoxL/trio-stats.bcf -a 1 -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/WJnGXJMoxL/trio-stats.vcf.gz -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/WJnGXJMoxL/trio-stats.bcf -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +smpl-stats /tmp/WJnGXJMoxL/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +smpl-stats /tmp/WJnGXJMoxL/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/WJnGXJMoxL/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/WJnGXJMoxL/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/WJnGXJMoxL/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/WJnGXJMoxL/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/WJnGXJMoxL/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/WJnGXJMoxL/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/WJnGXJMoxL/ad-bias.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/WJnGXJMoxL/ad-bias.bcf -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/WJnGXJMoxL/ad-bias.2.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/WJnGXJMoxL/ad-bias.2.bcf -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/WJnGXJMoxL/ad-bias.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/WJnGXJMoxL/ad-bias.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/WJnGXJMoxL/ad-bias.2.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/WJnGXJMoxL/ad-bias.2.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +af-dist /tmp/WJnGXJMoxL/af-dist.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +af-dist /tmp/WJnGXJMoxL/af-dist.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -i /tmp/WJnGXJMoxL/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -i /tmp/WJnGXJMoxL/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.3.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.3.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/WJnGXJMoxL/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/WJnGXJMoxL/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/WJnGXJMoxL/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/WJnGXJMoxL/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/WJnGXJMoxL/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/WJnGXJMoxL/ref.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/WJnGXJMoxL/ref.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/WJnGXJMoxL/view.vcf.gz -- -s NA00001 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/WJnGXJMoxL/view.bcf -- -s NA00001 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/WJnGXJMoxL/view.vcf.gz -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/WJnGXJMoxL/view.bcf -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/WJnGXJMoxL/view.vcf.gz -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/WJnGXJMoxL/view.bcf -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.vcf.gz -p child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.bcf -p child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.vcf.gz -p child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.bcf -p child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.vcf.gz -p child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.bcf -p child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.vcf.gz -p child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.bcf -p child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.vcf.gz -p child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.bcf -p child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.vcf.gz -p child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/WJnGXJMoxL/mendelian.bcf -p child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/WJnGXJMoxL/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/WJnGXJMoxL/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/WJnGXJMoxL/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/WJnGXJMoxL/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/WJnGXJMoxL/contrast.vcf.gz -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/WJnGXJMoxL/contrast.bcf -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/WJnGXJMoxL/contrast.1.vcf.gz -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/WJnGXJMoxL/contrast.1.bcf -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/WJnGXJMoxL/contrast.1.vcf.gz -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/WJnGXJMoxL/contrast.1.bcf -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.1.vcf.gz -p proband,father,mother --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.1.bcf -p proband,father,mother --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.2.vcf.gz -p proband,father,mother --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.2.bcf -p proband,father,mother --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother           | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.4.bcf -p proband,father,mother           | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.4.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.5.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.5.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.6.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.6.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.7.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother        --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.7.bcf -p proband,father,mother        --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.8.vcf.gz -p proband,father,mother  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.8.bcf -p proband,father,mother  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.9.vcf.gz -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.9.bcf -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.9.vcf.gz -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.9.bcf -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.10.vcf.gz -p proband,father,mother --with-pAD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.10.bcf -p proband,father,mother --with-pAD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother --strictly-novel | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/WJnGXJMoxL/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother --strictly-novel | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/WJnGXJMoxL/gvcfz.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/WJnGXJMoxL/gvcfz.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/WJnGXJMoxL/gvcfz.vcf.gz -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/WJnGXJMoxL/gvcfz.bcf -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/WJnGXJMoxL/gvcfz.2.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/WJnGXJMoxL/gvcfz.2.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.vcf.gz -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.bcf -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.vcf.gz -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.bcf -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.vcf.gz -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.bcf -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.vcf.gz -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.bcf -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.vcf.gz -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.bcf -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.vcf.gz -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.1.bcf -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.2.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.2.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/WJnGXJMoxL/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.2.bcf -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.2.bcf -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.3.vcf.gz -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.3.bcf -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.3.vcf.gz -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.3.bcf -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.3.vcf.gz -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.3.bcf -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.5.vcf.gz -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.5.bcf -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.5.vcf.gz -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.5.bcf -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.6.vcf.gz -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.6.bcf -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.6.vcf.gz -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.6.bcf -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.6.vcf.gz -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.6.bcf -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.7.vcf.gz --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.7.bcf --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.8.vcf.gz -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.8.bcf -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.8.vcf.gz         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.8.bcf         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.8.vcf.gz -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.8.bcf -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.8.vcf.gz         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.8.bcf         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.9.vcf.gz -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.9.bcf -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.9.vcf.gz -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.9.bcf -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.10.vcf.gz -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.10.bcf -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.10.vcf.gz -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.10.bcf -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.10.vcf.gz        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.10.bcf        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.vcf.gz -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.bcf -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.vcf.gz -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.bcf -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.vcf.gz -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.bcf -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.vcf.gz -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.select-tr-expr.bcf -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.filter-missing-bt2098.vcf.gz -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.filter-missing-bt2098.bcf -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.filter-missing-bt2098.vcf.gz -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/WJnGXJMoxL/split-vep.filter-missing-bt2098.bcf -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/WJnGXJMoxL/parental-origin.vcf.gz -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/WJnGXJMoxL/parental-origin.bcf -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/WJnGXJMoxL/parental-origin.vcf.gz -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/WJnGXJMoxL/parental-origin.bcf -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/WJnGXJMoxL/parental-origin.vcf.gz -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/WJnGXJMoxL/parental-origin.bcf -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/WJnGXJMoxL/parental-origin.vcf.gz -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/WJnGXJMoxL/parental-origin.bcf -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/WJnGXJMoxL/parental-origin.vcf.gz -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/WJnGXJMoxL/parental-origin.bcf -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/WJnGXJMoxL/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/WJnGXJMoxL/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/WJnGXJMoxL/prune.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/WJnGXJMoxL/prune.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/WJnGXJMoxL/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/WJnGXJMoxL/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/WJnGXJMoxL/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/WJnGXJMoxL/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/WJnGXJMoxL/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/WJnGXJMoxL/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/WJnGXJMoxL/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/WJnGXJMoxL/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N 1st /tmp/WJnGXJMoxL/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N 1st /tmp/WJnGXJMoxL/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/WJnGXJMoxL/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/WJnGXJMoxL/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/WJnGXJMoxL/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/WJnGXJMoxL/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/WJnGXJMoxL/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/WJnGXJMoxL/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/WJnGXJMoxL/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/WJnGXJMoxL/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance /tmp/WJnGXJMoxL/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance /tmp/WJnGXJMoxL/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d nearest /tmp/WJnGXJMoxL/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d nearest /tmp/WJnGXJMoxL/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d fwd /tmp/WJnGXJMoxL/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d fwd /tmp/WJnGXJMoxL/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d rev /tmp/WJnGXJMoxL/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d rev /tmp/WJnGXJMoxL/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d both /tmp/WJnGXJMoxL/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d both /tmp/WJnGXJMoxL/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_plugin_vrfs:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vrfs -a /tmp/WJnGXJMoxL/mpileup.bam.list -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/vrfs.sites.txt | sort
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/WJnGXJMoxL/split.1.1   && cd /tmp/WJnGXJMoxL/split.1.1  && for f in A1.vcf A2.vcf A3.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/WJnGXJMoxL/split.1.2 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.2.txt  && cd /tmp/WJnGXJMoxL/split.1.2  && for f in A.vcf B.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/WJnGXJMoxL/split.1.3 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.3.txt  && cd /tmp/WJnGXJMoxL/split.1.3  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/WJnGXJMoxL/split.1.4 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.3.txt -i 'GT[0]="alt"'  && cd /tmp/WJnGXJMoxL/split.1.4  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/WJnGXJMoxL/split.1.5 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.3.txt -i 'GT="alt"'  && cd /tmp/WJnGXJMoxL/split.1.5  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/WJnGXJMoxL/split.1.6 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.4.txt -i 'GT="alt"'  && cd /tmp/WJnGXJMoxL/split.1.6  && for f in file1.vcf file2.vcf file3.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/WJnGXJMoxL/split.1.7 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.grp.1.1.txt  && cd /tmp/WJnGXJMoxL/split.1.7  && for f in A.vcf A1.vcf A2.vcf B.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.2.vcf -o /tmp/WJnGXJMoxL/split.2.1   && cd /tmp/WJnGXJMoxL/split.2.1  && for f in A1_A1-1.vcf A1_A1-2.vcf A1_A1.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +scatter /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/scatter.1.vcf -o /tmp/WJnGXJMoxL/scatter.1.1 -n 3 && cd /tmp/WJnGXJMoxL/scatter.1.1 && cat 0.vcf 1.vcf 2.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +scatter /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/scatter.1.vcf -o /tmp/WJnGXJMoxL/scatter.1.2 -s 21,22 && cd /tmp/WJnGXJMoxL/scatter.1.2 && cat 21.vcf 22.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +scatter /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/scatter.1.vcf -o /tmp/WJnGXJMoxL/scatter.1.3 -s 21,22 -x X && cd /tmp/WJnGXJMoxL/scatter.1.3 && cat 21.vcf 22.vcf X.vcf | grep -v ^##
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G  /tmp/WJnGXJMoxL/concat.1.a.vcf.gz /tmp/WJnGXJMoxL/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -G  /tmp/WJnGXJMoxL/concat.1.a.vcf.gz /tmp/WJnGXJMoxL/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version   /tmp/WJnGXJMoxL/concat.1.a.vcf.gz /tmp/WJnGXJMoxL/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob   /tmp/WJnGXJMoxL/concat.1.a.vcf.gz /tmp/WJnGXJMoxL/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version   /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version   /tmp/WJnGXJMoxL/concat.1.a.bcf /tmp/WJnGXJMoxL/concat.1.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob   /tmp/WJnGXJMoxL/concat.1.a.bcf /tmp/WJnGXJMoxL/concat.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -a  /tmp/WJnGXJMoxL/concat.2.a.vcf.gz /tmp/WJnGXJMoxL/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -a  /tmp/WJnGXJMoxL/concat.2.a.vcf.gz /tmp/WJnGXJMoxL/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -a  /tmp/WJnGXJMoxL/concat.2.a.bcf /tmp/WJnGXJMoxL/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -a  /tmp/WJnGXJMoxL/concat.2.a.bcf /tmp/WJnGXJMoxL/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -aD  /tmp/WJnGXJMoxL/concat.2.a.vcf.gz /tmp/WJnGXJMoxL/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -aD  /tmp/WJnGXJMoxL/concat.2.a.vcf.gz /tmp/WJnGXJMoxL/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -aD  /tmp/WJnGXJMoxL/concat.2.a.bcf /tmp/WJnGXJMoxL/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -aD  /tmp/WJnGXJMoxL/concat.2.a.bcf /tmp/WJnGXJMoxL/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/WJnGXJMoxL/concat.3.a.vcf.gz /tmp/WJnGXJMoxL/concat.3.b.vcf.gz /tmp/WJnGXJMoxL/concat.3.0.vcf.gz /tmp/WJnGXJMoxL/concat.3.c.vcf.gz /tmp/WJnGXJMoxL/concat.3.d.vcf.gz /tmp/WJnGXJMoxL/concat.3.e.vcf.gz /tmp/WJnGXJMoxL/concat.3.f.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/WJnGXJMoxL/concat.3.a.vcf.gz /tmp/WJnGXJMoxL/concat.3.b.vcf.gz /tmp/WJnGXJMoxL/concat.3.0.vcf.gz /tmp/WJnGXJMoxL/concat.3.c.vcf.gz /tmp/WJnGXJMoxL/concat.3.d.vcf.gz /tmp/WJnGXJMoxL/concat.3.e.vcf.gz /tmp/WJnGXJMoxL/concat.3.f.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/WJnGXJMoxL/concat.3.a.bcf /tmp/WJnGXJMoxL/concat.3.b.bcf /tmp/WJnGXJMoxL/concat.3.0.bcf /tmp/WJnGXJMoxL/concat.3.c.bcf /tmp/WJnGXJMoxL/concat.3.d.bcf /tmp/WJnGXJMoxL/concat.3.e.bcf /tmp/WJnGXJMoxL/concat.3.f.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/WJnGXJMoxL/concat.3.a.bcf /tmp/WJnGXJMoxL/concat.3.b.bcf /tmp/WJnGXJMoxL/concat.3.0.bcf /tmp/WJnGXJMoxL/concat.3.c.bcf /tmp/WJnGXJMoxL/concat.3.d.bcf /tmp/WJnGXJMoxL/concat.3.e.bcf /tmp/WJnGXJMoxL/concat.3.f.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
Random seed for test_naive_concat: 138609258
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --naive-force /tmp/WJnGXJMoxL/naive_concat.0.bcf /tmp/WJnGXJMoxL/naive_concat.1.bcf /tmp/WJnGXJMoxL/naive_concat.2.bcf /tmp/WJnGXJMoxL/naive_concat.3.bcf /tmp/WJnGXJMoxL/naive_concat.4.bcf /tmp/WJnGXJMoxL/naive_concat.5.bcf /tmp/WJnGXJMoxL/naive_concat.6.bcf /tmp/WJnGXJMoxL/naive_concat.7.bcf /tmp/WJnGXJMoxL/naive_concat.8.bcf /tmp/WJnGXJMoxL/naive_concat.9.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --naive /tmp/WJnGXJMoxL/naive_concat.0.vcf.gz /tmp/WJnGXJMoxL/naive_concat.1.vcf.gz /tmp/WJnGXJMoxL/naive_concat.2.vcf.gz /tmp/WJnGXJMoxL/naive_concat.3.vcf.gz /tmp/WJnGXJMoxL/naive_concat.4.vcf.gz /tmp/WJnGXJMoxL/naive_concat.5.vcf.gz /tmp/WJnGXJMoxL/naive_concat.6.vcf.gz /tmp/WJnGXJMoxL/naive_concat.7.vcf.gz /tmp/WJnGXJMoxL/naive_concat.8.vcf.gz /tmp/WJnGXJMoxL/naive_concat.9.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l  /tmp/WJnGXJMoxL/concat.4.a.vcf.gz /tmp/WJnGXJMoxL/concat.4.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l  /tmp/WJnGXJMoxL/concat.4.a.vcf.gz /tmp/WJnGXJMoxL/concat.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l  /tmp/WJnGXJMoxL/concat.4.a.bcf /tmp/WJnGXJMoxL/concat.4.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l  /tmp/WJnGXJMoxL/concat.4.a.bcf /tmp/WJnGXJMoxL/concat.4.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/WJnGXJMoxL/concat.5.a.vcf.gz /tmp/WJnGXJMoxL/concat.5.b.vcf.gz /tmp/WJnGXJMoxL/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/WJnGXJMoxL/concat.5.a.vcf.gz /tmp/WJnGXJMoxL/concat.5.b.vcf.gz /tmp/WJnGXJMoxL/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/WJnGXJMoxL/concat.5.a.bcf /tmp/WJnGXJMoxL/concat.5.b.bcf /tmp/WJnGXJMoxL/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/WJnGXJMoxL/concat.5.a.bcf /tmp/WJnGXJMoxL/concat.5.b.bcf /tmp/WJnGXJMoxL/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-force  /tmp/WJnGXJMoxL/concat.5.a.bcf /tmp/WJnGXJMoxL/concat.5.b.bcf /tmp/WJnGXJMoxL/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-force  /tmp/WJnGXJMoxL/concat.5.a.bcf /tmp/WJnGXJMoxL/concat.5.b.bcf /tmp/WJnGXJMoxL/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G -a -D  /tmp/WJnGXJMoxL/concat.5.a.vcf.gz /tmp/WJnGXJMoxL/concat.5.b.vcf.gz /tmp/WJnGXJMoxL/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -G -a -D  /tmp/WJnGXJMoxL/concat.5.a.vcf.gz /tmp/WJnGXJMoxL/concat.5.b.vcf.gz /tmp/WJnGXJMoxL/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G -a -D  /tmp/WJnGXJMoxL/concat.5.a.bcf /tmp/WJnGXJMoxL/concat.5.b.bcf /tmp/WJnGXJMoxL/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -G -a -D  /tmp/WJnGXJMoxL/concat.5.a.bcf /tmp/WJnGXJMoxL/concat.5.b.bcf /tmp/WJnGXJMoxL/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/empty.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/empty.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr /tmp/WJnGXJMoxL/empty.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/empty.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr /tmp/WJnGXJMoxL/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/WJnGXJMoxL/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/WJnGXJMoxL/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/WJnGXJMoxL/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/WJnGXJMoxL/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/WJnGXJMoxL/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.fai /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.fai /tmp/WJnGXJMoxL/reheader.3.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.fai /tmp/WJnGXJMoxL/reheader.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/WJnGXJMoxL/rename.map -Ov /tmp/WJnGXJMoxL/annotate.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/WJnGXJMoxL/rename.map -Ob /tmp/WJnGXJMoxL/annotate.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/WJnGXJMoxL/rename.map -Ov /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/WJnGXJMoxL/rename.map -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids --3N6 /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --tag PL /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --tag PL /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids /tmp/WJnGXJMoxL/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --vcf-ids /tmp/WJnGXJMoxL/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6 /tmp/WJnGXJMoxL/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6 /tmp/WJnGXJMoxL/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6 --vcf-ids /tmp/WJnGXJMoxL/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6 --vcf-ids /tmp/WJnGXJMoxL/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h -,.,. /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,. /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,. --vcf-ids /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,.,- /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,.,-
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -H /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -H /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --haplegendsample -,.,. /tmp/WJnGXJMoxL/convert.hap-missing.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.hap-missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --haplegendsample -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,. /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,. --vcf-ids /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample .,- /tmp/WJnGXJMoxL/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/WJnGXJMoxL/convert.gvcf.vcf.gz
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/WJnGXJMoxL/convert.gvcf.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/WJnGXJMoxL/convert.gvcf.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa | grep -v ^##bcftools
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.23andme
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -Ou  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.23andme | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.tsv
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -Ou  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.tsv | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.gvcf-missing.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.gvcf-missing.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.beyond.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.beyond.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab -c /tmp/WJnGXJMoxL/consensus.1.chain.new >/dev/null; cat /tmp/WJnGXJMoxL/consensus.1.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab -c /tmp/WJnGXJMoxL/consensus.2.chain.new >/dev/null; cat /tmp/WJnGXJMoxL/consensus.2.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab -c /tmp/WJnGXJMoxL/consensus.3.chain.new >/dev/null; cat /tmp/WJnGXJMoxL/consensus.3.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1  -c /tmp/WJnGXJMoxL/consensus.4.chain.new >/dev/null; cat /tmp/WJnGXJMoxL/consensus.4.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/empty.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/empty.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus4.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus4.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus5.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus5.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus6.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus6.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.13.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.13.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.14.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.14.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.15.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.15.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.17.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.17.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.18.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.18.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.19.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.19.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.21.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.21.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/WJnGXJMoxL/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2  
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/WJnGXJMoxL/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/WJnGXJMoxL/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/WJnGXJMoxL/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/WJnGXJMoxL/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/WJnGXJMoxL/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/WJnGXJMoxL/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/WJnGXJMoxL/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/WJnGXJMoxL/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.gff3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.chr.gff3 --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.gff --ncsq 64 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names -,-,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names -,-,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names -,chr,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names chr,chr,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names chr,-,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names chr,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names chr,-,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff --unify-chr-names Chromosome,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.yychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000593942/ENST00000593942.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000593942/ENST00000593942.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000593942/last-codon-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000528237/ENST00000528237.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000528237/ENST00000528237.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000528237/retained-stop-incomplete-cds.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000422159 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000422159.fa -g ENST00000422159.gff multiallelic.vcf  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000422159.fa -g short.gff multiallelic.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000390520/ENST00000390520.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000390520/ENST00000390520.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000390520/deletion-overlap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f EMN908947.fa -g ribosomal-slippage.gff ribosomal-slippage.vcf --force | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f EMN908947.fa -g simple.gff simple.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000379416 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.del-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-del.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-ins.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff single.vcf                 | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000301246/ENST00000301246.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000301246/ENST00000301246.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000301246/15bp-insert.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414-ENST00000521270/valgrind.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000571540/ENST00000571540.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000571540/ENST00000571540.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000571540/nmd.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000285021/ENST00000285021.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000285021/ENST00000285021.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000285021/stop-gained-inframe-indel.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000357367/ENST00000357367.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000357367/ENST00000357367.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000357367/stop-retained.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000230048/ENST00000230048.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000230048/ENST00000230048.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000230048/start-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 0 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2/ENST00000368801.2.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2/ENST00000368801.2.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414/ENST00000518414.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414/ENST00000518414.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414/incorrect-inframe-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000382647/ENST00000382647.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000382647/ENST00000382647.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000382647/synon-splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a -Ot | grep -v ^#
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000400151/ENST00000400151.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000400151/ENST00000400151.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000400151/long-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000580206 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff single.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff single.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000519442/ENST00000519442.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000519442/ENST00000519442.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000519442/synon-splice-region-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420190/ENST00000420190.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420190/ENST00000420190.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420190/abort-in-csq-push.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000557788/ENST00000557788.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000557788/ENST00000557788.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000557788/long-overlap-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0003/EDUMMY0003.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0003/EDUMMY0003.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0003/long-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000133836 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000133836.fa -g ENSMUST00000133836.gff filter-problem.vcf -i 'FILTER="PASS"' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000436063/ENST00000436063.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000436063/ENST00000436063.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000436063/insert-before-utr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000375992/ENST00000375992.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000375992/ENST00000375992.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000375992/incorrect-synon-del-not-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249.2/ENST00000318249.2.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249.2/ENST00000318249.2.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249.2/synonymous-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25500' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25496' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25105' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0002/EDUMMY0002.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0002/EDUMMY0002.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0002/boundaries.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000269081/ENST00000269081.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000269081/ENST00000269081.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000269081/stop-gained-not-inframe-insertion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000271583/ENST00000271583.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000271583/ENST00000271583.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000271583/splice-acceptor.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000256452/ENST00000256452.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000256452/ENST00000256452.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000256452/intron.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSCAFT00000047742/test.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573035-bt2212/complex-event.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000227471/ENST00000227471.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000227471/ENST00000227471.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000227471/insert-splice-vs-frameshift.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000624631/ENST00000624631.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000624631/ENST00000624631.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000624631/ambiguous.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -b -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 5 -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -lb -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009/ENST00000410009.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009/ENST00000410009.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009/frameshift.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000360372/ENST00000360372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000360372/ENST00000360372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000360372/mnp.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000409523/ENST00000409523.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000409523/ENST00000409523.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000409523/long-overlapping-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/start-lost-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000545279/ENST00000545279.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000545279/ENST00000545279.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000545279/splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/start-stop-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/segfault.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000381157/ENST00000381157.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000381157/ENST00000381157.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000381157/haploid-diploid.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520868/ENST00000520868.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520868/ENST00000520868.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520868/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801/ENST00000368801.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801/ENST00000368801.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801/compound-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000448695/ENST00000448695.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000448695/ENST00000448695.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000448695/syn-and-splice-reg.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSG00000173376/ENSG00000173376.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSG00000173376/ENSG00000173376.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSG00000173376/synon.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000413103/ENST00000413103.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000413103/ENST00000413103.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000413103/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000000000 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -p a -f ENST00000000000.fa -g ENST00000000000.gff upstream-stop.vcf  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%SAMPLE\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000263103-INS/ENST00000263103-INS.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000263103-INS/ENST00000263103-INS.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000263103-INS/insertions.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz -Or -G30 --AF-dflt 0.4| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.tab.gz| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.tab.gz --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref --include-noalt| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --include-noalt| grep -v ^#
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck --keep-refs /tmp/WJnGXJMoxL/gtcheck.gvcf.a.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck --keep-refs /tmp/WJnGXJMoxL/gtcheck.gvcf.b.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/WJnGXJMoxL/gtcheck.gvcf.a.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/WJnGXJMoxL/gtcheck.gvcf.b.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 --no-HWE-prob /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,GT /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,PL /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,GT /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,PL /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -p s1,s1 /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 /tmp/WJnGXJMoxL/gtcheck.2.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0  /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -p B,A,C,A,C,B,D,A,D,B,D,C,E,A,E,B,E,C,E,D /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gtcheck.3.pairs /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 --n-matches 4 /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO  | sort
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:E,D,C /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:E,D,C -u PL /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:B -s gt:D /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:B -s gt:D -u PL /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:B -s gt:D,C /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -p B,C,B,D /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,GT -H /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,PL -H /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,GT -H /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,PL -H /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gtcheck.4.pairs --distinctive-sites 3 /tmp/WJnGXJMoxL/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gtcheck.4.pairs --distinctive-sites 3,1 /tmp/WJnGXJMoxL/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u GT -e 30 /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u GT -e 30 -p s1,s1 /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u GT -e 300 /tmp/WJnGXJMoxL/gtcheck.1.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u PL -e 30 /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/WJnGXJMoxL/gtcheck.ntop.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck --n-matches 2 /tmp/WJnGXJMoxL/gtcheck.ntop.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/WJnGXJMoxL/gtcheck.5.vcf.gz -g /tmp/WJnGXJMoxL/gtcheck.5.gts.vcf.gz | grep -v ^# | grep -v Time
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -p A,B,B,C /tmp/WJnGXJMoxL/gtcheck.6.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -t 11:33 -p A,D,A,E,D,E -u GT -e 10 /tmp/WJnGXJMoxL/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/WJnGXJMoxL/merge.4.b.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/WJnGXJMoxL/merge.4.b.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/WJnGXJMoxL/split-vep.2.vcf.gz  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/WJnGXJMoxL/split-vep.2.bcf  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok


Number of tests:
    total   .. 2396
    passed  .. 2396
    failed  .. 0

+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bcftools-1.23-1.fc43.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.UqJFwz
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ cd bcftools-1.23
+ DOCDIR=/builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/AUTHORS /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/NEWS /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.O1Zfj3
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ cd bcftools-1.23
+ LICENSEDIR=/builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/licenses/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/licenses/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/LICENSE /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/licenses/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bcftools = 1.23-1.fc43 bcftools(aarch-64) = 1.23-1.fc43
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl /usr/bin/python3 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgsl.so.28()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libhts.so.3(HTSLIB_1.0)(64bit) libhts.so.3(HTSLIB_1.1)(64bit) libhts.so.3(HTSLIB_1.10)(64bit) libhts.so.3(HTSLIB_1.13)(64bit) libhts.so.3(HTSLIB_1.16)(64bit) libhts.so.3(HTSLIB_1.17)(64bit) libhts.so.3(HTSLIB_1.2.1)(64bit) libhts.so.3(HTSLIB_1.22)(64bit) libhts.so.3(HTSLIB_1.3)(64bit) libhts.so.3(HTSLIB_1.4)(64bit) libhts.so.3(HTSLIB_1.5)(64bit) libhts.so.3(HTSLIB_1.6)(64bit) libhts.so.3(HTSLIB_1.7)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libperl.so.5.42()(64bit) rtld(GNU_HASH)
Conflicts: samtools < 1.0
Processing files: bcftools-debugsource-1.23-1.fc43.aarch64
Provides: bcftools-debugsource = 1.23-1.fc43 bcftools-debugsource(aarch-64) = 1.23-1.fc43
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bcftools-debuginfo-1.23-1.fc43.aarch64
Provides: bcftools-debuginfo = 1.23-1.fc43 bcftools-debuginfo(aarch-64) = 1.23-1.fc43 debuginfo(build-id) = 0588a8305c35585262823565eda4523a2fdde951 debuginfo(build-id) = 0c200f6349e4a79579112d55196d132eb8e8a639 debuginfo(build-id) = 158aeb464cdaa076e5a76eba9e9f3c942d100b5e debuginfo(build-id) = 1dc2f88c19ff0b53faaef2c621d98a816a8055b8 debuginfo(build-id) = 39b60951c0d246bb6a228572fe783ab864734507 debuginfo(build-id) = 3aa3952334b9eb4ef1fac71594edf0e6b26b76fc debuginfo(build-id) = 3b89683bea681a534cf6a3ba24b2af59cc8eb6c8 debuginfo(build-id) = 3c6c6fd483f61b48a27c66e0ced307ab11def419 debuginfo(build-id) = 48286a5fcfd9e088e518424eecc1ae080f6364e8 debuginfo(build-id) = 48efa7f2d2fd4040a33f801dd49279d39fcb4a00 debuginfo(build-id) = 4a9b9264a29ff943c30fc92e7feb10570d0d5dd4 debuginfo(build-id) = 4f6006b6044a0cf54ae0155a7565bcdf46746378 debuginfo(build-id) = 52b2a3161bc1a563612138760b04f4f8ad88f409 debuginfo(build-id) = 5502046aead6da4225eab484c587ccee45e69e22 debuginfo(build-id) = 5679bf78f23e2bc4dc3cd5d473eb5e1b855484fb debuginfo(build-id) = 64a640129de5740d231a7082a53c78c8d1fbf4da debuginfo(build-id) = 6b0a732726ab627968883fd75d2e424b388ec934 debuginfo(build-id) = 6d342235552ae582e54fbdaaf30978523805d79e debuginfo(build-id) = 748daee3d2387e1c5c3d472cb475bc626e5241aa debuginfo(build-id) = 784836ce0fb8006843b4b0cdd4a6cd06f37df655 debuginfo(build-id) = 789138a38834165a39ecf31f2feb3bb8611f0794 debuginfo(build-id) = 7e580b37801c153376fa4ba10f958f79429898af debuginfo(build-id) = 8f0637f5f9291e435179639798d19042a8ebc0b2 debuginfo(build-id) = 91ec1889787f7acb38db5bd06244fb11838d2750 debuginfo(build-id) = 95bba49d6ca3b7a8ea14ea55f077db51e9cce56d debuginfo(build-id) = 9a41e441babe4693a3fc9e83ca3da93dd5ec3d66 debuginfo(build-id) = 9f3f5462247736b5d5504c1d909c05eae739889f debuginfo(build-id) = a0aa55d36e389c908ef60fef3763d399ee9e3e9b debuginfo(build-id) = b49efcfabc50f5330082c83945f53c74deb0edd6 debuginfo(build-id) = bbaca65afd69a5b41e8fc1b1384cf284179b41dd debuginfo(build-id) = c7244bda783445116e8c4ede710540289e12f5fb debuginfo(build-id) = c78bf28e0eb957914aa94730996555a96b36f1da debuginfo(build-id) = c941006e84e43a2e2c6c8e1c1a649303c58272a0 debuginfo(build-id) = d1d3b054a8aef25badf17fe3e1d8ac85850ae318 debuginfo(build-id) = d2a0700cbc64478bc0b0af1f2db58269f82d76de debuginfo(build-id) = d54984e8f2c75127da1174083f2345ece51ada41 debuginfo(build-id) = e5545da3aae80780308bdd95e6057174f72743f9 debuginfo(build-id) = e7f7c1777400e1923e0f3b00db3b4045606bedc1 debuginfo(build-id) = e99c994147839f10b7002e1f72ad28c0f4b1a36d debuginfo(build-id) = f02db3364275eddadab6c0cfe44d69739ca69fc2 debuginfo(build-id) = fa465a3116105897c6d657f81105ed1d23ff7de7 debuginfo(build-id) = fbfb174e6d115619b278cdbe95546eb141ae6db8
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bcftools-debugsource(aarch-64) = 1.23-1.fc43
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
Wrote: /builddir/build/RPMS/bcftools-1.23-1.fc43.aarch64.rpm
Wrote: /builddir/build/RPMS/bcftools-debugsource-1.23-1.fc43.aarch64.rpm
Wrote: /builddir/build/RPMS/bcftools-debuginfo-1.23-1.fc43.aarch64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Q4vQG5
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ test -d /builddir/build/BUILD/bcftools-1.23-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bcftools-1.23-build
+ rm -rf /builddir/build/BUILD/bcftools-1.23-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bcftools-1.23-1.fc43.src.rpm
Finish: build phase for bcftools-1.23-1.fc43.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-43-aarch64-1769501916.045769/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/bcftools-1.23-1.fc43.src.rpm) Config(child) 1 minutes 26 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "bcftools-debuginfo",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc43",
            "arch": "aarch64"
        },
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc43",
            "arch": "src"
        },
        {
            "name": "bcftools-debugsource",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc43",
            "arch": "aarch64"
        },
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc43",
            "arch": "aarch64"
        }
    ]
}
RPMResults finished