Warning: Permanently added '2620:52:6:1161:dead:beef:cafe:c14f' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10066873-fedora-43-ppc64le --chroot fedora-43-ppc64le


Version: 1.6
PID: 53423
Logging PID: 53425
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'build_id': 10066873,
 'buildroot_pkgs': [],
 'chroot': 'fedora-43-ppc64le',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'e14e663825689d893c3d0d37656f4dd10cee491c',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ron/staging/bcftools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bcftools',
 'package_version': '1.23-1',
 'project_dirname': 'staging',
 'project_name': 'staging',
 'project_owner': 'ron',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ron/staging/fedora-43-ppc64le/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'ron/staging--ron',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'ron',
 'tags': [],
 'task_id': '10066873-fedora-43-ppc64le',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ron/staging/bcftools /var/lib/copr-rpmbuild/workspace/workdir-lie5fuuz/bcftools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ron/staging/bcftools', '/var/lib/copr-rpmbuild/workspace/workdir-lie5fuuz/bcftools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-lie5fuuz/bcftools'...

Running: git checkout e14e663825689d893c3d0d37656f4dd10cee491c --

cmd: ['git', 'checkout', 'e14e663825689d893c3d0d37656f4dd10cee491c', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-lie5fuuz/bcftools
rc: 0
stdout: 
stderr: Note: switching to 'e14e663825689d893c3d0d37656f4dd10cee491c'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at e14e663 automatic import of bcftools

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-lie5fuuz/bcftools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading bcftools-1.23.tar.bz2
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o bcftools-1.23.tar.bz2 --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ron/staging/bcftools/bcftools-1.23.tar.bz2/md5/a33e895594ff53ed68eded2e0b742540/bcftools-1.23.tar.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 7942k  100 7942k    0     0  13.1M      0 --:--:-- --:--:-- --:--:-- 13.1M
INFO: Reading stdout from command: md5sum bcftools-1.23.tar.bz2

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-lie5fuuz/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-lie5fuuz/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1769509624.928484 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.6 starting (python version = 3.14.2, NVR = mock-6.6-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-lie5fuuz/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-lie5fuuz/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1769509624.928484 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-lie5fuuz/bcftools/bcftools.spec)  Config(fedora-43-ppc64le)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.6
INFO: Mock Version: 6.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-43-ppc64le-bootstrap-1769509624.928484/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:43
INFO: Pulling image: registry.fedoraproject.org/fedora:43
INFO: Tagging container image as mock-bootstrap-1a19343c-e262-42a8-b161-3645a68e533c
INFO: Checking that 18e411c14bbe0ba80799508c4d33fe88381b813f4281b9b61881b74a0526d072 image matches host's architecture
INFO: Copy content of container 18e411c14bbe0ba80799508c4d33fe88381b813f4281b9b61881b74a0526d072 to /var/lib/mock/fedora-43-ppc64le-bootstrap-1769509624.928484/root
INFO: mounting 18e411c14bbe0ba80799508c4d33fe88381b813f4281b9b61881b74a0526d072 with podman image mount
INFO: image 18e411c14bbe0ba80799508c4d33fe88381b813f4281b9b61881b74a0526d072 as /var/lib/containers/storage/overlay/3e5bc801b11285f12ca0c1537e78755bcba25dfc88a470a8ae2284b929149385/merged
INFO: umounting image 18e411c14bbe0ba80799508c4d33fe88381b813f4281b9b61881b74a0526d072 (/var/lib/containers/storage/overlay/3e5bc801b11285f12ca0c1537e78755bcba25dfc88a470a8ae2284b929149385/merged) with podman image umount
INFO: Removing image mock-bootstrap-1a19343c-e262-42a8-b161-3645a68e533c
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-43-ppc64le-1769509624.928484/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc43.ppc64le
  rpm-sequoia-1.10.0-1.fc43.ppc64le
  dnf5-5.2.17.0-2.fc43.ppc64le
  dnf5-plugins-5.2.17.0-2.fc43.ppc64le
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 Copr repository                        100% |   9.1 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |  37.9 KiB/s |   9.2 KiB |  00m00s
 updates                                100% |  32.2 KiB/s |   6.4 KiB |  00m00s
Repositories loaded.
Package                            Arch    Version                     Repository      Size
Installing group/module packages:
 bash                              ppc64le 5.3.0-2.fc43                fedora       8.9 MiB
 bzip2                             ppc64le 1.0.8-21.fc43               fedora     171.2 KiB
 coreutils                         ppc64le 9.7-7.fc43                  updates      9.4 MiB
 cpio                              ppc64le 2.15-6.fc43                 fedora       1.2 MiB
 diffutils                         ppc64le 3.12-3.fc43                 fedora       1.7 MiB
 fedora-release-common             noarch  43-25                       fedora      20.6 KiB
 findutils                         ppc64le 1:4.10.0-6.fc43             fedora       2.0 MiB
 gawk                              ppc64le 5.3.2-2.fc43                fedora       2.8 MiB
 glibc-minimal-langpack            ppc64le 2.42-9.fc43                 updates      0.0   B
 grep                              ppc64le 3.12-2.fc43                 fedora       1.0 MiB
 gzip                              ppc64le 1.13-4.fc43                 fedora     424.6 KiB
 info                              ppc64le 7.2-6.fc43                  fedora     485.5 KiB
 patch                             ppc64le 2.8-2.fc43                  fedora     262.5 KiB
 redhat-rpm-config                 noarch  343-11.fc43                 fedora     182.9 KiB
 rpm-build                         ppc64le 6.0.1-1.fc43                updates    663.4 KiB
 sed                               ppc64le 4.9-5.fc43                  fedora     937.1 KiB
 shadow-utils                      ppc64le 2:4.18.0-3.fc43             fedora       4.8 MiB
 tar                               ppc64le 2:1.35-6.fc43               fedora       3.1 MiB
 unzip                             ppc64le 6.0-67.fc43                 fedora     533.9 KiB
 util-linux                        ppc64le 2.41.3-7.fc43               updates      6.9 MiB
 which                             ppc64le 2.23-3.fc43                 fedora     123.3 KiB
 xz                                ppc64le 1:5.8.1-4.fc43              updates      1.4 MiB
Installing dependencies:
 add-determinism                   ppc64le 0.6.0-2.fc43                fedora       2.5 MiB
 alternatives                      ppc64le 1.33-3.fc43                 updates     90.1 KiB
 ansible-srpm-macros               noarch  1-18.1.fc43                 fedora      35.7 KiB
 audit-libs                        ppc64le 4.1.2-2.fc43                updates    550.5 KiB
 binutils                          ppc64le 2.45.1-4.fc43               updates     33.1 MiB
 build-reproducibility-srpm-macros noarch  0.6.0-2.fc43                fedora     735.0   B
 bzip2-libs                        ppc64le 1.0.8-21.fc43               fedora     136.5 KiB
 ca-certificates                   noarch  2025.2.80_v9.0.304-1.1.fc43 fedora       2.7 MiB
 coreutils-common                  ppc64le 9.7-7.fc43                  updates     11.3 MiB
 crypto-policies                   noarch  20251125-1.git63291f8.fc43  updates    147.1 KiB
 curl                              ppc64le 8.15.0-5.fc43               updates    521.5 KiB
 cyrus-sasl-lib                    ppc64le 2.1.28-33.fc43              fedora       2.9 MiB
 debugedit                         ppc64le 5.2-3.fc43                  fedora     381.6 KiB
 dwz                               ppc64le 0.16-2.fc43                 fedora     386.6 KiB
 ed                                ppc64le 1.22.2-1.fc43               fedora     155.9 KiB
 efi-srpm-macros                   noarch  6-4.fc43                    fedora      40.1 KiB
 elfutils                          ppc64le 0.194-1.fc43                updates      3.4 MiB
 elfutils-debuginfod-client        ppc64le 0.194-1.fc43                updates    143.5 KiB
 elfutils-default-yama-scope       noarch  0.194-1.fc43                updates      1.8 KiB
 elfutils-libelf                   ppc64le 0.194-1.fc43                updates      1.2 MiB
 elfutils-libs                     ppc64le 0.194-1.fc43                updates    874.6 KiB
 fedora-gpg-keys                   noarch  43-1                        fedora     131.2 KiB
 fedora-release                    noarch  43-25                       fedora       0.0   B
 fedora-release-identity-basic     noarch  43-25                       fedora     631.0   B
 fedora-repos                      noarch  43-1                        fedora       4.9 KiB
 file                              ppc64le 5.46-8.fc43                 fedora     140.1 KiB
 file-libs                         ppc64le 5.46-8.fc43                 fedora      11.9 MiB
 filesystem                        ppc64le 3.18-50.fc43                fedora     112.0   B
 filesystem-srpm-macros            noarch  3.18-50.fc43                fedora      38.2 KiB
 fonts-srpm-macros                 noarch  1:2.0.5-23.fc43             fedora      55.8 KiB
 forge-srpm-macros                 noarch  0.4.0-3.fc43                fedora      38.9 KiB
 fpc-srpm-macros                   noarch  1.3-15.fc43                 fedora     144.0   B
 gap-srpm-macros                   noarch  2-1.fc43                    fedora       2.1 KiB
 gdb-minimal                       ppc64le 17.1-1.fc43                 updates     16.1 MiB
 gdbm-libs                         ppc64le 1:1.23-10.fc43              fedora     233.5 KiB
 ghc-srpm-macros                   noarch  1.9.2-3.fc43                fedora     779.0   B
 glibc                             ppc64le 2.42-9.fc43                 updates     11.6 MiB
 glibc-common                      ppc64le 2.42-9.fc43                 updates      1.5 MiB
 glibc-gconv-extra                 ppc64le 2.42-9.fc43                 updates     18.5 MiB
 gmp                               ppc64le 1:6.3.0-4.fc43              fedora     786.2 KiB
 gnat-srpm-macros                  noarch  7-1.fc43                    updates      1.0 KiB
 gnulib-l10n                       noarch  20241231-1.fc43             fedora     655.0 KiB
 gnupg2                            ppc64le 2.4.9-4.fc43                updates      6.9 MiB
 gnupg2-dirmngr                    ppc64le 2.4.9-4.fc43                updates    838.1 KiB
 gnupg2-gpg-agent                  ppc64le 2.4.9-4.fc43                updates    975.0 KiB
 gnupg2-gpgconf                    ppc64le 2.4.9-4.fc43                updates    321.8 KiB
 gnupg2-keyboxd                    ppc64le 2.4.9-4.fc43                updates    297.2 KiB
 gnupg2-verify                     ppc64le 2.4.9-4.fc43                updates    428.3 KiB
 gnutls                            ppc64le 3.8.11-5.fc43               updates      4.1 MiB
 go-srpm-macros                    noarch  3.8.0-1.fc43                fedora      61.9 KiB
 gpgverify                         noarch  2.2-3.fc43                  fedora       8.7 KiB
 ima-evm-utils-libs                ppc64le 1.6.2-6.fc43                fedora      92.6 KiB
 jansson                           ppc64le 2.14-3.fc43                 fedora     157.0 KiB
 java-srpm-macros                  noarch  1-7.fc43                    fedora     870.0   B
 json-c                            ppc64le 0.18-7.fc43                 fedora     138.6 KiB
 kernel-srpm-macros                noarch  1.0-27.fc43                 fedora       1.9 KiB
 keyutils-libs                     ppc64le 1.6.3-6.fc43                fedora      98.0 KiB
 krb5-libs                         ppc64le 1.21.3-7.fc43               fedora       3.0 MiB
 libacl                            ppc64le 2.3.2-4.fc43                fedora      67.6 KiB
 libarchive                        ppc64le 3.8.4-1.fc43                updates      1.3 MiB
 libassuan                         ppc64le 2.5.7-4.fc43                fedora     215.8 KiB
 libattr                           ppc64le 2.5.2-6.fc43                fedora      68.1 KiB
 libblkid                          ppc64le 2.41.3-7.fc43               updates    354.5 KiB
 libbrotli                         ppc64le 1.2.0-1.fc43                updates      1.0 MiB
 libcap                            ppc64le 2.76-3.fc43                 fedora     507.7 KiB
 libcap-ng                         ppc64le 0.8.5-8.fc43                fedora     160.3 KiB
 libcom_err                        ppc64le 1.47.3-2.fc43               fedora     111.0 KiB
 libcurl                           ppc64le 8.15.0-5.fc43               updates      1.1 MiB
 libeconf                          ppc64le 0.7.9-2.fc43                fedora      80.8 KiB
 libevent                          ppc64le 2.1.12-16.fc43              fedora       1.2 MiB
 libfdisk                          ppc64le 2.41.3-7.fc43               updates    483.0 KiB
 libffi                            ppc64le 3.5.2-1.fc43                updates    347.7 KiB
 libfsverity                       ppc64le 1.6-3.fc43                  fedora      68.1 KiB
 libgcc                            ppc64le 15.2.1-5.fc43               updates    286.4 KiB
 libgcrypt                         ppc64le 1.11.1-3.fc43               updates      1.5 MiB
 libgomp                           ppc64le 15.2.1-5.fc43               updates    645.2 KiB
 libgpg-error                      ppc64le 1.55-2.fc43                 fedora       1.0 MiB
 libidn2                           ppc64le 2.3.8-2.fc43                fedora     560.2 KiB
 libksba                           ppc64le 1.6.7-4.fc43                fedora     526.5 KiB
 liblastlog2                       ppc64le 2.41.3-7.fc43               updates    137.4 KiB
 libmount                          ppc64le 2.41.3-7.fc43               updates    548.3 KiB
 libnghttp2                        ppc64le 1.66.0-2.fc43               fedora     197.9 KiB
 libpkgconf                        ppc64le 2.3.0-3.fc43                fedora     133.9 KiB
 libpsl                            ppc64le 0.21.5-6.fc43               fedora     132.1 KiB
 librtas                           ppc64le 2.0.6-4.fc43                fedora     305.4 KiB
 libselinux                        ppc64le 3.9-5.fc43                  fedora     265.1 KiB
 libsemanage                       ppc64le 3.9-4.fc43                  fedora     423.9 KiB
 libsepol                          ppc64le 3.9-2.fc43                  fedora       1.0 MiB
 libsmartcols                      ppc64le 2.41.3-7.fc43               updates    289.5 KiB
 libssh                            ppc64le 0.11.3-1.fc43               fedora     715.2 KiB
 libssh-config                     noarch  0.11.3-1.fc43               fedora     277.0   B
 libstdc++                         ppc64le 15.2.1-5.fc43               updates      3.9 MiB
 libtasn1                          ppc64le 4.20.0-2.fc43               fedora     220.0 KiB
 libtool-ltdl                      ppc64le 2.5.4-8.fc43                updates     93.9 KiB
 libunistring                      ppc64le 1.1-10.fc43                 fedora       1.9 MiB
 libusb1                           ppc64le 1.0.29-4.fc43               fedora     242.8 KiB
 libuuid                           ppc64le 2.41.3-7.fc43               updates     69.3 KiB
 libverto                          ppc64le 0.3.2-11.fc43               fedora      69.1 KiB
 libxcrypt                         ppc64le 4.5.2-1.fc43                updates    337.0 KiB
 libxml2                           ppc64le 2.12.10-5.fc43              fedora       2.3 MiB
 libzstd                           ppc64le 1.5.7-2.fc43                fedora     923.8 KiB
 lua-libs                          ppc64le 5.4.8-4.fc43                updates    393.8 KiB
 lua-srpm-macros                   noarch  1-16.fc43                   fedora       1.3 KiB
 lz4-libs                          ppc64le 1.10.0-3.fc43               fedora     261.1 KiB
 mpfr                              ppc64le 4.2.2-2.fc43                fedora     913.7 KiB
 ncurses-base                      noarch  6.5-7.20250614.fc43         fedora     328.1 KiB
 ncurses-libs                      ppc64le 6.5-7.20250614.fc43         fedora       1.5 MiB
 nettle                            ppc64le 3.10.1-2.fc43               fedora     957.8 KiB
 npth                              ppc64le 1.8-3.fc43                  fedora      93.1 KiB
 ocaml-srpm-macros                 noarch  11-2.fc43                   fedora       1.9 KiB
 openblas-srpm-macros              noarch  2-20.fc43                   fedora     112.0   B
 openldap                          ppc64le 2.6.10-4.fc43               fedora     889.9 KiB
 openssl-libs                      ppc64le 1:3.5.4-1.fc43              updates      9.0 MiB
 p11-kit                           ppc64le 0.25.8-1.fc43               fedora       2.9 MiB
 p11-kit-trust                     ppc64le 0.25.8-1.fc43               fedora     594.1 KiB
 package-notes-srpm-macros         noarch  0.5-14.fc43                 fedora       1.6 KiB
 pam-libs                          ppc64le 1.7.1-4.fc43                updates    286.3 KiB
 pcre2                             ppc64le 10.47-1.fc43                updates    842.0 KiB
 pcre2-syntax                      noarch  10.47-1.fc43                updates    281.9 KiB
 perl-srpm-macros                  noarch  1-60.fc43                   fedora     861.0   B
 pkgconf                           ppc64le 2.3.0-3.fc43                fedora     112.3 KiB
 pkgconf-m4                        noarch  2.3.0-3.fc43                fedora      14.4 KiB
 pkgconf-pkg-config                ppc64le 2.3.0-3.fc43                fedora     990.0   B
 popt                              ppc64le 1.19-9.fc43                 fedora     208.7 KiB
 publicsuffix-list-dafsa           noarch  20260116-1.fc43             updates     70.4 KiB
 pyproject-srpm-macros             noarch  1.18.6-1.fc43               updates      1.9 KiB
 python-srpm-macros                noarch  3.14-5.fc43                 fedora      51.5 KiB
 qt5-srpm-macros                   noarch  5.15.18-1.fc43              updates    500.0   B
 qt6-srpm-macros                   noarch  6.10.1-1.fc43               updates    464.0   B
 readline                          ppc64le 8.3-2.fc43                  fedora     627.5 KiB
 rpm                               ppc64le 6.0.1-1.fc43                updates      4.2 MiB
 rpm-build-libs                    ppc64le 6.0.1-1.fc43                updates    328.0 KiB
 rpm-libs                          ppc64le 6.0.1-1.fc43                updates      1.2 MiB
 rpm-sequoia                       ppc64le 1.10.0-1.fc43               updates      4.9 MiB
 rpm-sign-libs                     ppc64le 6.0.1-1.fc43                updates     67.6 KiB
 rust-srpm-macros                  noarch  28.4-1.fc43                 updates      5.5 KiB
 setup                             noarch  2.15.0-26.fc43              fedora     725.0 KiB
 sqlite-libs                       ppc64le 3.50.2-2.fc43               fedora       1.9 MiB
 systemd-libs                      ppc64le 258.3-2.fc43                updates      3.0 MiB
 systemd-standalone-sysusers       ppc64le 258.3-2.fc43                updates    393.5 KiB
 tpm2-tss                          ppc64le 4.1.3-8.fc43                fedora       2.5 MiB
 tree-sitter-srpm-macros           noarch  0.4.2-1.fc43                fedora       8.3 KiB
 util-linux-core                   ppc64le 2.41.3-7.fc43               updates      2.5 MiB
 xxhash-libs                       ppc64le 0.8.3-3.fc43                fedora      85.6 KiB
 xz-libs                           ppc64le 1:5.8.1-4.fc43              updates    265.3 KiB
 zig-srpm-macros                   noarch  1-5.fc43                    fedora       1.1 KiB
 zip                               ppc64le 3.0-44.fc43                 fedora     889.8 KiB
 zlib-ng-compat                    ppc64le 2.3.2-2.fc43                updates    197.4 KiB
 zstd                              ppc64le 1.5.7-2.fc43                fedora       1.9 MiB
Installing groups:
 Buildsystem building group                                                                

Transaction Summary:
 Installing:       171 packages

Total size of inbound packages is 65 MiB. Need to download 0 B.
After this operation, 257 MiB extra will be used (install 257 MiB, remove 0 B).
[  1/171] tar-2:1.35-6.fc43.ppc64le     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
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>>> Already downloaded                                                          
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>>> Already downloaded                                                          
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>>> Already downloaded                                                          
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>>> Already downloaded                                                          
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>>> Already downloaded                                                          
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>>> Already downloaded                                                          
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>>> Already downloaded                                                          
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>>> Already downloaded                                                          
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>>> Already downloaded                                                          
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>>> Already downloaded                                                          
--------------------------------------------------------------------------------
[171/171] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
Importing OpenPGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[  1/173] Verify package files          100% | 165.0   B/s | 171.0   B |  00m01s
[  2/173] Prepare transaction           100% |   1.0 KiB/s | 171.0   B |  00m00s
[  3/173] Installing libgcc-0:15.2.1-5. 100% |  70.3 MiB/s | 288.1 KiB |  00m00s
[  4/173] Installing fedora-release-ide 100% | 433.6 KiB/s | 888.0   B |  00m00s
[  5/173] Installing fedora-gpg-keys-0: 100% |  10.9 MiB/s | 179.0 KiB |  00m00s
[  6/173] Installing fedora-repos-0:43- 100% |   5.6 MiB/s |   5.7 KiB |  00m00s
[  7/173] Installing fedora-release-com 100% |   8.1 MiB/s |  24.9 KiB |  00m00s
[  8/173] Installing fedora-release-0:4 100% |  13.5 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch                   
>>> Finished sysusers scriptlet: setup-0:2.15.0-26.fc43.noarch                  
>>> Scriptlet output:                                                           
>>> Creating group 'adm' with GID 4.                                            
>>> Creating group 'audio' with GID 63.                                         
>>> Creating group 'cdrom' with GID 11.                                         
>>> Creating group 'clock' with GID 103.                                        
>>> Creating group 'dialout' with GID 18.                                       
>>> Creating group 'disk' with GID 6.                                           
>>> Creating group 'floppy' with GID 19.                                        
>>> Creating group 'ftp' with GID 50.                                           
>>> Creating group 'games' with GID 20.                                         
>>> Creating group 'input' with GID 104.                                        
>>> Creating group 'kmem' with GID 9.                                           
>>> Creating group 'kvm' with GID 36.                                           
>>> Creating group 'lock' with GID 54.                                          
>>> Creating group 'lp' with GID 7.                                             
>>> Creating group 'mail' with GID 12.                                          
>>> Creating group 'man' with GID 15.                                           
>>> Creating group 'mem' with GID 8.                                            
>>> Creating group 'nobody' with GID 65534.                                     
>>> Creating group 'render' with GID 105.                                       
>>> Creating group 'root' with GID 0.                                           
>>> Creating group 'sgx' with GID 106.                                          
>>> Creating group 'sys' with GID 3.                                            
>>> Creating group 'tape' with GID 33.                                          
>>> Creating group 'tty' with GID 5.                                            
>>> Creating group 'users' with GID 100.                                        
>>> Creating group 'utmp' with GID 22.                                          
>>> Creating group 'video' with GID 39.                                         
>>> Creating group 'wheel' with GID 10.                                         
>>> Creating user 'adm' (adm) with UID 3 and GID 4.                             
>>> Creating group 'bin' with GID 1.                                            
>>> Creating user 'bin' (bin) with UID 1 and GID 1.                             
>>> Creating group 'daemon' with GID 2.                                         
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.                       
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.                      
>>> Creating user 'games' (games) with UID 12 and GID 100.                      
>>> Creating user 'halt' (halt) with UID 7 and GID 0.                           
>>> Creating user 'lp' (lp) with UID 4 and GID 7.                               
>>> Creating user 'mail' (mail) with UID 8 and GID 12.                          
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. 
>>> Creating user 'operator' (operator) with UID 11 and GID 0.                  
>>> Creating user 'root' (Super User) with UID 0 and GID 0.                     
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.                   
>>> Creating user 'sync' (sync) with UID 5 and GID 0.                           
>>>                                                                             
[  9/173] Installing setup-0:2.15.0-26. 100% |  13.7 MiB/s | 730.6 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew                               
[ 10/173] Installing filesystem-0:3.18- 100% | 716.3 KiB/s | 212.8 KiB |  00m00s
[ 11/173] Installing publicsuffix-list- 100% |  34.7 MiB/s |  71.1 KiB |  00m00s
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[ 13/173] Installing pcre2-syntax-0:10. 100% |  69.4 MiB/s | 284.3 KiB |  00m00s
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[ 15/173] Installing qt6-srpm-macros-0: 100% | 722.7 KiB/s | 740.0   B |  00m00s
[ 16/173] Installing qt5-srpm-macros-0: 100% | 757.8 KiB/s | 776.0   B |  00m00s
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[ 18/173] Installing gnulib-l10n-0:2024 100% |  49.7 MiB/s | 661.9 KiB |  00m00s
[ 19/173] Installing coreutils-common-0 100% | 112.9 MiB/s |  11.3 MiB |  00m00s
[ 20/173] Installing pkgconf-m4-0:2.3.0 100% |   7.2 MiB/s |  14.8 KiB |  00m00s
[ 21/173] Installing ncurses-base-0:6.5 100% |  19.2 MiB/s | 353.5 KiB |  00m00s
[ 22/173] Installing bash-0:5.3.0-2.fc4 100% |  80.5 MiB/s |   8.9 MiB |  00m00s
[ 23/173] Installing glibc-common-0:2.4 100% |  27.0 MiB/s |   1.5 MiB |  00m00s
[ 24/173] Installing glibc-gconv-extra- 100% | 123.0 MiB/s |  18.6 MiB |  00m00s
[ 25/173] Installing glibc-0:2.42-9.fc4 100% |  80.4 MiB/s |  11.6 MiB |  00m00s
[ 26/173] Installing ncurses-libs-0:6.5 100% |  99.7 MiB/s |   1.5 MiB |  00m00s
[ 27/173] Installing glibc-minimal-lang 100% | 121.1 KiB/s | 124.0   B |  00m00s
[ 28/173] Installing zlib-ng-compat-0:2 100% |  64.5 MiB/s | 198.2 KiB |  00m00s
[ 29/173] Installing bzip2-libs-0:1.0.8 100% |  44.8 MiB/s | 137.7 KiB |  00m00s
[ 30/173] Installing libgpg-error-0:1.5 100% |  19.9 MiB/s |   1.0 MiB |  00m00s
[ 31/173] Installing libstdc++-0:15.2.1 100% | 122.1 MiB/s |   3.9 MiB |  00m00s
[ 32/173] Installing xz-libs-1:5.8.1-4. 100% |  65.0 MiB/s | 266.4 KiB |  00m00s
[ 33/173] Installing libassuan-0:2.5.7- 100% |  70.8 MiB/s | 217.6 KiB |  00m00s
[ 34/173] Installing libgcrypt-0:1.11.1 100% | 100.5 MiB/s |   1.5 MiB |  00m00s
[ 35/173] Installing readline-0:8.3-2.f 100% |  87.8 MiB/s | 629.7 KiB |  00m00s
[ 36/173] Installing gmp-1:6.3.0-4.fc43 100% |  85.5 MiB/s | 788.4 KiB |  00m00s
[ 37/173] Installing libuuid-0:2.41.3-7 100% |  34.3 MiB/s |  70.3 KiB |  00m00s
[ 38/173] Installing popt-0:1.19-9.fc43 100% |  23.4 MiB/s | 215.3 KiB |  00m00s
[ 39/173] Installing npth-0:1.8-3.fc43. 100% |  46.0 MiB/s |  94.2 KiB |  00m00s
[ 40/173] Installing libblkid-0:2.41.3- 100% |  86.8 MiB/s | 355.7 KiB |  00m00s
[ 41/173] Installing sqlite-libs-0:3.50 100% | 107.7 MiB/s |   1.9 MiB |  00m00s
[ 42/173] Installing libzstd-0:1.5.7-2. 100% | 100.4 MiB/s | 925.0 KiB |  00m00s
[ 43/173] Installing elfutils-libelf-0: 100% | 109.7 MiB/s |   1.2 MiB |  00m00s
[ 44/173] Installing libxcrypt-0:4.5.2- 100% |  66.4 MiB/s | 339.7 KiB |  00m00s
[ 45/173] Installing gnupg2-gpgconf-0:2 100% |   7.5 MiB/s | 323.9 KiB |  00m00s
[ 46/173] Installing libattr-0:2.5.2-6. 100% |  33.7 MiB/s |  69.1 KiB |  00m00s
[ 47/173] Installing libacl-0:2.3.2-4.f 100% |  33.4 MiB/s |  68.4 KiB |  00m00s
[ 48/173] Installing libtasn1-0:4.20.0- 100% |  54.2 MiB/s | 221.9 KiB |  00m00s
[ 49/173] Installing libunistring-0:1.1 100% | 110.1 MiB/s |   1.9 MiB |  00m00s
[ 50/173] Installing libidn2-0:2.3.8-2. 100% |  30.7 MiB/s | 566.4 KiB |  00m00s
[ 51/173] Installing crypto-policies-0: 100% |   9.9 MiB/s | 172.2 KiB |  00m00s
[ 52/173] Installing dwz-0:0.16-2.fc43. 100% |   9.0 MiB/s | 388.0 KiB |  00m00s
[ 53/173] Installing gnupg2-verify-0:2. 100% |  10.0 MiB/s | 429.7 KiB |  00m00s
[ 54/173] Installing mpfr-0:4.2.2-2.fc4 100% |  89.4 MiB/s | 915.3 KiB |  00m00s
[ 55/173] Installing gawk-0:5.3.2-2.fc4 100% |  42.9 MiB/s |   2.8 MiB |  00m00s
[ 56/173] Installing libksba-0:1.6.7-4. 100% |  73.8 MiB/s | 529.0 KiB |  00m00s
[ 57/173] Installing unzip-0:6.0-67.fc4 100% |  12.2 MiB/s | 537.4 KiB |  00m00s
[ 58/173] Installing file-libs-0:5.46-8 100% | 177.3 MiB/s |  11.9 MiB |  00m00s
[ 59/173] Installing file-0:5.46-8.fc43 100% |   3.5 MiB/s | 141.6 KiB |  00m00s
[ 60/173] Installing libeconf-0:0.7.9-2 100% |  26.9 MiB/s |  82.5 KiB |  00m00s
[ 61/173] Installing libcap-ng-0:0.8.5- 100% |  52.8 MiB/s | 162.1 KiB |  00m00s
[ 62/173] Installing audit-libs-0:4.1.2 100% |  90.0 MiB/s | 553.2 KiB |  00m00s
[ 63/173] Installing pam-libs-0:1.7.1-4 100% |  70.5 MiB/s | 288.7 KiB |  00m00s
[ 64/173] Installing libcap-0:2.76-3.fc 100% |  11.1 MiB/s | 512.9 KiB |  00m00s
[ 65/173] Installing systemd-libs-0:258 100% | 118.5 MiB/s |   3.0 MiB |  00m00s
[ 66/173] Installing libsmartcols-0:2.4 100% |  70.9 MiB/s | 290.6 KiB |  00m00s
[ 67/173] Installing libsepol-0:3.9-2.f 100% | 104.2 MiB/s |   1.0 MiB |  00m00s
[ 68/173] Installing lz4-libs-0:1.10.0- 100% |  64.0 MiB/s | 262.2 KiB |  00m00s
[ 69/173] Installing json-c-0:0.18-7.fc 100% |  45.5 MiB/s | 139.8 KiB |  00m00s
[ 70/173] Installing lua-libs-0:5.4.8-4 100% |  77.2 MiB/s | 395.3 KiB |  00m00s
[ 71/173] Installing alternatives-0:1.3 100% |   2.2 MiB/s |  91.7 KiB |  00m00s
[ 72/173] Installing libffi-0:3.5.2-1.f 100% |  68.2 MiB/s | 349.0 KiB |  00m00s
[ 73/173] Installing p11-kit-0:0.25.8-1 100% |  41.0 MiB/s |   3.0 MiB |  00m00s
[ 74/173] Installing p11-kit-trust-0:0. 100% |  11.4 MiB/s | 595.9 KiB |  00m00s
[ 75/173] Installing pcre2-0:10.47-1.fc 100% | 103.0 MiB/s | 843.4 KiB |  00m00s
[ 76/173] Installing libselinux-0:3.9-5 100% |  65.0 MiB/s | 266.4 KiB |  00m00s
[ 77/173] Installing grep-0:3.12-2.fc43 100% |  19.2 MiB/s |   1.0 MiB |  00m00s
[ 78/173] Installing sed-0:4.9-5.fc43.p 100% |  17.8 MiB/s | 945.3 KiB |  00m00s
[ 79/173] Installing findutils-1:4.10.0 100% |  33.5 MiB/s |   2.0 MiB |  00m00s
[ 80/173] Installing xz-1:5.8.1-4.fc43. 100% |  23.2 MiB/s |   1.4 MiB |  00m00s
[ 81/173] Installing libmount-0:2.41.3- 100% |  76.6 MiB/s | 549.3 KiB |  00m00s
[ 82/173] Installing util-linux-core-0: 100% |  38.3 MiB/s |   2.5 MiB |  00m00s
[ 83/173] Installing openssl-libs-1:3.5 100% | 124.0 MiB/s |   9.0 MiB |  00m00s
[ 84/173] Installing coreutils-0:9.7-7. 100% |  77.2 MiB/s |   9.4 MiB |  00m00s
[ 85/173] Installing ca-certificates-0: 100% | 665.3 KiB/s |   2.5 MiB |  00m04s
[ 86/173] Installing gzip-0:1.13-4.fc43 100% |   7.2 MiB/s | 430.2 KiB |  00m00s
[ 87/173] Installing libfsverity-0:1.6- 100% |  22.5 MiB/s |  69.1 KiB |  00m00s
[ 88/173] Installing libevent-0:2.1.12- 100% | 100.8 MiB/s |   1.2 MiB |  00m00s
[ 89/173] Installing rpm-sequoia-0:1.10 100% | 122.9 MiB/s |   4.9 MiB |  00m00s
[ 90/173] Installing tar-2:1.35-6.fc43. 100% |  46.0 MiB/s |   3.1 MiB |  00m00s
[ 91/173] Installing libsemanage-0:3.9- 100% |  69.3 MiB/s | 425.7 KiB |  00m00s
[ 92/173] Installing systemd-standalone 100% |   9.4 MiB/s | 394.1 KiB |  00m00s
[ 93/173] Installing rpm-libs-0:6.0.1-1 100% | 102.0 MiB/s |   1.2 MiB |  00m00s
[ 94/173] Installing zstd-0:1.5.7-2.fc4 100% |  36.0 MiB/s |   1.9 MiB |  00m00s
[ 95/173] Installing libusb1-0:1.0.29-4 100% |  18.4 MiB/s | 244.4 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.ppc64le                 
>>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.ppc64le                
>>> Scriptlet output:                                                           
>>> Creating group 'tss' with GID 59.                                           
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.   
>>>                                                                             
[ 96/173] Installing tpm2-tss-0:4.1.3-8 100% | 107.4 MiB/s |   2.5 MiB |  00m00s
[ 97/173] Installing ima-evm-utils-libs 100% |  45.8 MiB/s |  93.9 KiB |  00m00s
[ 98/173] Installing gnupg2-gpg-agent-0 100% |  17.7 MiB/s | 979.0 KiB |  00m00s
[ 99/173] Installing zip-0:3.0-44.fc43. 100% |  18.6 MiB/s | 893.7 KiB |  00m00s
[100/173] Installing gnupg2-keyboxd-0:2 100% |  32.4 MiB/s | 298.5 KiB |  00m00s
[101/173] Installing libpsl-0:0.21.5-6. 100% |  43.4 MiB/s | 133.2 KiB |  00m00s
[102/173] Installing liblastlog2-0:2.41 100% |  19.5 MiB/s | 139.5 KiB |  00m00s
[103/173] Installing libfdisk-0:2.41.3- 100% |  78.8 MiB/s | 484.0 KiB |  00m00s
[104/173] Installing nettle-0:3.10.1-2. 100% |  93.8 MiB/s | 960.9 KiB |  00m00s
[105/173] Installing gnutls-0:3.8.11-5. 100% | 116.4 MiB/s |   4.1 MiB |  00m00s
[106/173] Installing libxml2-0:2.12.10- 100% |  37.8 MiB/s |   2.3 MiB |  00m00s
[107/173] Installing libarchive-0:3.8.4 100% |  97.5 MiB/s |   1.3 MiB |  00m00s
[108/173] Installing bzip2-0:1.0.8-21.f 100% |   4.2 MiB/s | 175.7 KiB |  00m00s
[109/173] Installing add-determinism-0: 100% |  43.0 MiB/s |   2.5 MiB |  00m00s
[110/173] Installing build-reproducibil 100% |   1.0 MiB/s |   1.0 KiB |  00m00s
[111/173] Installing cpio-0:2.15-6.fc43 100% |  22.3 MiB/s |   1.2 MiB |  00m00s
[112/173] Installing diffutils-0:3.12-3 100% |  29.6 MiB/s |   1.7 MiB |  00m00s
[113/173] Installing ed-0:1.22.2-1.fc43 100% |   3.9 MiB/s | 158.2 KiB |  00m00s
[114/173] Installing patch-0:2.8-2.fc43 100% |   6.3 MiB/s | 264.0 KiB |  00m00s
[115/173] Installing librtas-0:2.0.6-4. 100% |  23.1 MiB/s | 307.5 KiB |  00m00s
[116/173] Installing libpkgconf-0:2.3.0 100% |  43.9 MiB/s | 135.0 KiB |  00m00s
[117/173] Installing pkgconf-0:2.3.0-3. 100% |   2.7 MiB/s | 114.8 KiB |  00m00s
[118/173] Installing pkgconf-pkg-config 100% |  45.5 KiB/s |   1.8 KiB |  00m00s
[119/173] Installing gdbm-libs-1:1.23-1 100% |  57.4 MiB/s | 235.2 KiB |  00m00s
[120/173] Installing cyrus-sasl-lib-0:2 100% |  45.6 MiB/s |   2.9 MiB |  00m00s
[121/173] Installing libgomp-0:15.2.1-5 100% |  90.2 MiB/s | 646.6 KiB |  00m00s
[122/173] Installing jansson-0:2.14-3.f 100% |  51.6 MiB/s | 158.4 KiB |  00m00s
[123/173] Installing libtool-ltdl-0:2.5 100% |  46.4 MiB/s |  95.0 KiB |  00m00s
[124/173] Installing openldap-0:2.6.10- 100% |  79.3 MiB/s | 893.7 KiB |  00m00s
[125/173] Installing gnupg2-dirmngr-0:2 100% |  15.5 MiB/s | 840.8 KiB |  00m00s
[126/173] Installing gnupg2-0:2.4.9-4.f 100% |  71.3 MiB/s |   6.9 MiB |  00m00s
[127/173] Installing rpm-sign-libs-0:6. 100% |  33.4 MiB/s |  68.5 KiB |  00m00s
[128/173] Installing gpgverify-0:2.2-3. 100% |   9.2 MiB/s |   9.4 KiB |  00m00s
[129/173] Installing xxhash-libs-0:0.8. 100% |  28.3 MiB/s |  87.0 KiB |  00m00s
[130/173] Installing libnghttp2-0:1.66. 100% |  64.8 MiB/s | 199.0 KiB |  00m00s
[131/173] Installing keyutils-libs-0:1. 100% |  48.5 MiB/s |  99.4 KiB |  00m00s
[132/173] Installing libcom_err-0:1.47. 100% |  54.8 MiB/s | 112.1 KiB |  00m00s
[133/173] Installing libverto-0:0.3.2-1 100% |  23.1 MiB/s |  70.9 KiB |  00m00s
[134/173] Installing krb5-libs-0:1.21.3 100% | 102.4 MiB/s |   3.0 MiB |  00m00s
[135/173] Installing libssh-0:0.11.3-1. 100% |  87.6 MiB/s | 717.3 KiB |  00m00s
[136/173] Installing libbrotli-0:1.2.0- 100% |  92.2 MiB/s |   1.0 MiB |  00m00s
[137/173] Installing libcurl-0:8.15.0-5 100% |  95.4 MiB/s |   1.1 MiB |  00m00s
[138/173] Installing curl-0:8.15.0-5.fc 100% |   8.8 MiB/s | 524.0 KiB |  00m00s
[139/173] Installing rpm-0:6.0.1-1.fc43 100% |  29.0 MiB/s |   2.8 MiB |  00m00s
[140/173] Installing efi-srpm-macros-0: 100% |  20.1 MiB/s |  41.1 KiB |  00m00s
[141/173] Installing java-srpm-macros-0 100% |   1.1 MiB/s |   1.1 KiB |  00m00s
[142/173] Installing lua-srpm-macros-0: 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[143/173] Installing tree-sitter-srpm-m 100% |   4.5 MiB/s |   9.3 KiB |  00m00s
[144/173] Installing zig-srpm-macros-0: 100% |   1.6 MiB/s |   1.7 KiB |  00m00s
[145/173] Installing filesystem-srpm-ma 100% |  19.0 MiB/s |  38.9 KiB |  00m00s
[146/173] Installing elfutils-default-y 100% | 340.5 KiB/s |   2.0 KiB |  00m00s
[147/173] Installing elfutils-libs-0:0. 100% |  85.6 MiB/s | 876.4 KiB |  00m00s
[148/173] Installing elfutils-debuginfo 100% |   3.4 MiB/s | 145.8 KiB |  00m00s
[149/173] Installing elfutils-0:0.194-1 100% |  51.5 MiB/s |   3.5 MiB |  00m00s
[150/173] Installing binutils-0:2.45.1- 100% | 114.5 MiB/s |  33.1 MiB |  00m00s
[151/173] Installing gdb-minimal-0:17.1 100% | 100.0 MiB/s |  16.1 MiB |  00m00s
[152/173] Installing debugedit-0:5.2-3. 100% |   8.5 MiB/s | 384.8 KiB |  00m00s
[153/173] Installing rpm-build-libs-0:6 100% |  64.2 MiB/s | 328.8 KiB |  00m00s
[154/173] Installing perl-srpm-macros-0 100% |   1.1 MiB/s |   1.1 KiB |  00m00s
[155/173] Installing package-notes-srpm 100% |   2.0 MiB/s |   2.0 KiB |  00m00s
[156/173] Installing openblas-srpm-macr 100% | 382.8 KiB/s | 392.0   B |  00m00s
[157/173] Installing ocaml-srpm-macros- 100% |   2.1 MiB/s |   2.1 KiB |  00m00s
[158/173] Installing kernel-srpm-macros 100% |   2.3 MiB/s |   2.3 KiB |  00m00s
[159/173] Installing ghc-srpm-macros-0: 100% |   1.0 MiB/s |   1.0 KiB |  00m00s
[160/173] Installing gap-srpm-macros-0: 100% |   2.6 MiB/s |   2.7 KiB |  00m00s
[161/173] Installing fpc-srpm-macros-0: 100% | 410.2 KiB/s | 420.0   B |  00m00s
[162/173] Installing ansible-srpm-macro 100% |  17.7 MiB/s |  36.2 KiB |  00m00s
[163/173] Installing rpm-build-0:6.0.1- 100% |  13.4 MiB/s | 672.5 KiB |  00m00s
[164/173] Installing pyproject-srpm-mac 100% |   1.2 MiB/s |   2.5 KiB |  00m00s
[165/173] Installing redhat-rpm-config- 100% |  26.4 MiB/s | 189.1 KiB |  00m00s
[166/173] Installing forge-srpm-macros- 100% |  19.7 MiB/s |  40.3 KiB |  00m00s
[167/173] Installing fonts-srpm-macros- 100% |  27.8 MiB/s |  57.0 KiB |  00m00s
[168/173] Installing go-srpm-macros-0:3 100% |  30.8 MiB/s |  63.0 KiB |  00m00s
[169/173] Installing python-srpm-macros 100% |   8.6 MiB/s |  52.8 KiB |  00m00s
[170/173] Installing util-linux-0:2.41. 100% |  55.0 MiB/s |   7.0 MiB |  00m00s
[171/173] Installing shadow-utils-2:4.1 100% |  44.6 MiB/s |   4.9 MiB |  00m00s
[172/173] Installing which-0:2.23-3.fc4 100% |   3.0 MiB/s | 125.5 KiB |  00m00s
[173/173] Installing info-0:7.2-6.fc43. 100% | 103.1 KiB/s | 485.9 KiB |  00m05s
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.6.0-2.fc43.ppc64le
alternatives-1.33-3.fc43.ppc64le
ansible-srpm-macros-1-18.1.fc43.noarch
audit-libs-4.1.2-2.fc43.ppc64le
bash-5.3.0-2.fc43.ppc64le
binutils-2.45.1-4.fc43.ppc64le
build-reproducibility-srpm-macros-0.6.0-2.fc43.noarch
bzip2-1.0.8-21.fc43.ppc64le
bzip2-libs-1.0.8-21.fc43.ppc64le
ca-certificates-2025.2.80_v9.0.304-1.1.fc43.noarch
coreutils-9.7-7.fc43.ppc64le
coreutils-common-9.7-7.fc43.ppc64le
cpio-2.15-6.fc43.ppc64le
crypto-policies-20251125-1.git63291f8.fc43.noarch
curl-8.15.0-5.fc43.ppc64le
cyrus-sasl-lib-2.1.28-33.fc43.ppc64le
debugedit-5.2-3.fc43.ppc64le
diffutils-3.12-3.fc43.ppc64le
dwz-0.16-2.fc43.ppc64le
ed-1.22.2-1.fc43.ppc64le
efi-srpm-macros-6-4.fc43.noarch
elfutils-0.194-1.fc43.ppc64le
elfutils-debuginfod-client-0.194-1.fc43.ppc64le
elfutils-default-yama-scope-0.194-1.fc43.noarch
elfutils-libelf-0.194-1.fc43.ppc64le
elfutils-libs-0.194-1.fc43.ppc64le
fedora-gpg-keys-43-1.noarch
fedora-release-43-25.noarch
fedora-release-common-43-25.noarch
fedora-release-identity-basic-43-25.noarch
fedora-repos-43-1.noarch
file-5.46-8.fc43.ppc64le
file-libs-5.46-8.fc43.ppc64le
filesystem-3.18-50.fc43.ppc64le
filesystem-srpm-macros-3.18-50.fc43.noarch
findutils-4.10.0-6.fc43.ppc64le
fonts-srpm-macros-2.0.5-23.fc43.noarch
forge-srpm-macros-0.4.0-3.fc43.noarch
fpc-srpm-macros-1.3-15.fc43.noarch
gap-srpm-macros-2-1.fc43.noarch
gawk-5.3.2-2.fc43.ppc64le
gdb-minimal-17.1-1.fc43.ppc64le
gdbm-libs-1.23-10.fc43.ppc64le
ghc-srpm-macros-1.9.2-3.fc43.noarch
glibc-2.42-9.fc43.ppc64le
glibc-common-2.42-9.fc43.ppc64le
glibc-gconv-extra-2.42-9.fc43.ppc64le
glibc-minimal-langpack-2.42-9.fc43.ppc64le
gmp-6.3.0-4.fc43.ppc64le
gnat-srpm-macros-7-1.fc43.noarch
gnulib-l10n-20241231-1.fc43.noarch
gnupg2-2.4.9-4.fc43.ppc64le
gnupg2-dirmngr-2.4.9-4.fc43.ppc64le
gnupg2-gpg-agent-2.4.9-4.fc43.ppc64le
gnupg2-gpgconf-2.4.9-4.fc43.ppc64le
gnupg2-keyboxd-2.4.9-4.fc43.ppc64le
gnupg2-verify-2.4.9-4.fc43.ppc64le
gnutls-3.8.11-5.fc43.ppc64le
go-srpm-macros-3.8.0-1.fc43.noarch
gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf
gpgverify-2.2-3.fc43.noarch
grep-3.12-2.fc43.ppc64le
gzip-1.13-4.fc43.ppc64le
ima-evm-utils-libs-1.6.2-6.fc43.ppc64le
info-7.2-6.fc43.ppc64le
jansson-2.14-3.fc43.ppc64le
java-srpm-macros-1-7.fc43.noarch
json-c-0.18-7.fc43.ppc64le
kernel-srpm-macros-1.0-27.fc43.noarch
keyutils-libs-1.6.3-6.fc43.ppc64le
krb5-libs-1.21.3-7.fc43.ppc64le
libacl-2.3.2-4.fc43.ppc64le
libarchive-3.8.4-1.fc43.ppc64le
libassuan-2.5.7-4.fc43.ppc64le
libattr-2.5.2-6.fc43.ppc64le
libblkid-2.41.3-7.fc43.ppc64le
libbrotli-1.2.0-1.fc43.ppc64le
libcap-2.76-3.fc43.ppc64le
libcap-ng-0.8.5-8.fc43.ppc64le
libcom_err-1.47.3-2.fc43.ppc64le
libcurl-8.15.0-5.fc43.ppc64le
libeconf-0.7.9-2.fc43.ppc64le
libevent-2.1.12-16.fc43.ppc64le
libfdisk-2.41.3-7.fc43.ppc64le
libffi-3.5.2-1.fc43.ppc64le
libfsverity-1.6-3.fc43.ppc64le
libgcc-15.2.1-5.fc43.ppc64le
libgcrypt-1.11.1-3.fc43.ppc64le
libgomp-15.2.1-5.fc43.ppc64le
libgpg-error-1.55-2.fc43.ppc64le
libidn2-2.3.8-2.fc43.ppc64le
libksba-1.6.7-4.fc43.ppc64le
liblastlog2-2.41.3-7.fc43.ppc64le
libmount-2.41.3-7.fc43.ppc64le
libnghttp2-1.66.0-2.fc43.ppc64le
libpkgconf-2.3.0-3.fc43.ppc64le
libpsl-0.21.5-6.fc43.ppc64le
librtas-2.0.6-4.fc43.ppc64le
libselinux-3.9-5.fc43.ppc64le
libsemanage-3.9-4.fc43.ppc64le
libsepol-3.9-2.fc43.ppc64le
libsmartcols-2.41.3-7.fc43.ppc64le
libssh-0.11.3-1.fc43.ppc64le
libssh-config-0.11.3-1.fc43.noarch
libstdc++-15.2.1-5.fc43.ppc64le
libtasn1-4.20.0-2.fc43.ppc64le
libtool-ltdl-2.5.4-8.fc43.ppc64le
libunistring-1.1-10.fc43.ppc64le
libusb1-1.0.29-4.fc43.ppc64le
libuuid-2.41.3-7.fc43.ppc64le
libverto-0.3.2-11.fc43.ppc64le
libxcrypt-4.5.2-1.fc43.ppc64le
libxml2-2.12.10-5.fc43.ppc64le
libzstd-1.5.7-2.fc43.ppc64le
lua-libs-5.4.8-4.fc43.ppc64le
lua-srpm-macros-1-16.fc43.noarch
lz4-libs-1.10.0-3.fc43.ppc64le
mpfr-4.2.2-2.fc43.ppc64le
ncurses-base-6.5-7.20250614.fc43.noarch
ncurses-libs-6.5-7.20250614.fc43.ppc64le
nettle-3.10.1-2.fc43.ppc64le
npth-1.8-3.fc43.ppc64le
ocaml-srpm-macros-11-2.fc43.noarch
openblas-srpm-macros-2-20.fc43.noarch
openldap-2.6.10-4.fc43.ppc64le
openssl-libs-3.5.4-1.fc43.ppc64le
p11-kit-0.25.8-1.fc43.ppc64le
p11-kit-trust-0.25.8-1.fc43.ppc64le
package-notes-srpm-macros-0.5-14.fc43.noarch
pam-libs-1.7.1-4.fc43.ppc64le
patch-2.8-2.fc43.ppc64le
pcre2-10.47-1.fc43.ppc64le
pcre2-syntax-10.47-1.fc43.noarch
perl-srpm-macros-1-60.fc43.noarch
pkgconf-2.3.0-3.fc43.ppc64le
pkgconf-m4-2.3.0-3.fc43.noarch
pkgconf-pkg-config-2.3.0-3.fc43.ppc64le
popt-1.19-9.fc43.ppc64le
publicsuffix-list-dafsa-20260116-1.fc43.noarch
pyproject-srpm-macros-1.18.6-1.fc43.noarch
python-srpm-macros-3.14-5.fc43.noarch
qt5-srpm-macros-5.15.18-1.fc43.noarch
qt6-srpm-macros-6.10.1-1.fc43.noarch
readline-8.3-2.fc43.ppc64le
redhat-rpm-config-343-11.fc43.noarch
rpm-6.0.1-1.fc43.ppc64le
rpm-build-6.0.1-1.fc43.ppc64le
rpm-build-libs-6.0.1-1.fc43.ppc64le
rpm-libs-6.0.1-1.fc43.ppc64le
rpm-sequoia-1.10.0-1.fc43.ppc64le
rpm-sign-libs-6.0.1-1.fc43.ppc64le
rust-srpm-macros-28.4-1.fc43.noarch
sed-4.9-5.fc43.ppc64le
setup-2.15.0-26.fc43.noarch
shadow-utils-4.18.0-3.fc43.ppc64le
sqlite-libs-3.50.2-2.fc43.ppc64le
systemd-libs-258.3-2.fc43.ppc64le
systemd-standalone-sysusers-258.3-2.fc43.ppc64le
tar-1.35-6.fc43.ppc64le
tpm2-tss-4.1.3-8.fc43.ppc64le
tree-sitter-srpm-macros-0.4.2-1.fc43.noarch
unzip-6.0-67.fc43.ppc64le
util-linux-2.41.3-7.fc43.ppc64le
util-linux-core-2.41.3-7.fc43.ppc64le
which-2.23-3.fc43.ppc64le
xxhash-libs-0.8.3-3.fc43.ppc64le
xz-5.8.1-4.fc43.ppc64le
xz-libs-5.8.1-4.fc43.ppc64le
zig-srpm-macros-1-5.fc43.noarch
zip-3.0-44.fc43.ppc64le
zlib-ng-compat-2.3.2-2.fc43.ppc64le
zstd-1.5.7-2.fc43.ppc64le
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769385600
Wrote: /builddir/build/SRPMS/bcftools-1.23-1.fc43.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-43-ppc64le-1769509624.928484/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-lie5fuuz/bcftools/bcftools.spec) Config(child) 0 minutes 39 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/bcftools-1.23-1.fc43.src.rpm)  Config(fedora-43-ppc64le)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-43-ppc64le-bootstrap-1769509624.928484/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-43-ppc64le-bootstrap-1769509624.928484/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-43-ppc64le-1769509624.928484/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-1.fc43.ppc64le
  rpm-sequoia-1.10.0-1.fc43.ppc64le
  dnf5-5.2.17.0-2.fc43.ppc64le
  dnf5-plugins-5.2.17.0-2.fc43.ppc64le
Finish: chroot init
Start: build phase for bcftools-1.23-1.fc43.src.rpm
Start: build setup for bcftools-1.23-1.fc43.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769385600
Wrote: /builddir/build/SRPMS/bcftools-1.23-1.fc43.src.rpm
Updating and loading repositories:
 Copr repository                        100% |   6.5 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |  30.5 KiB/s |   9.2 KiB |  00m00s
 updates                                100% |  24.3 KiB/s |   6.4 KiB |  00m00s
Repositories loaded.
Package                   Arch    Version              Repository      Size
Installing:
 autoconf                 noarch  2.72-7.fc43          fedora       2.8 MiB
 automake                 noarch  1.18.1-2.fc43        fedora       1.8 MiB
 gcc                      ppc64le 15.2.1-5.fc43        updates     97.9 MiB
 gsl-devel                ppc64le 2.8-2.fc43           fedora       1.6 MiB
 htslib-devel             ppc64le 1.23-1.fc43          copr_base  449.9 KiB
 htslib-tools             ppc64le 1.23-1.fc43          copr_base    4.6 MiB
 make                     ppc64le 1:4.4.1-11.fc43      fedora       1.9 MiB
 perl-ExtUtils-Embed      noarch  1.35-520.fc43        fedora      15.6 KiB
 perl-File-Temp           noarch  1:0.231.100-520.fc43 fedora     162.3 KiB
 perl-FindBin             noarch  1.54-520.fc43        fedora       6.8 KiB
 perl-Getopt-Long         noarch  1:2.58-520.fc43      fedora     144.5 KiB
 perl-interpreter         ppc64le 4:5.42.0-520.fc43    fedora     174.5 KiB
 zlib-ng-compat-devel     ppc64le 2.3.2-2.fc43         updates    107.0 KiB
Installing dependencies:
 annobin-docs             noarch  12.99-1.fc43         fedora      98.9 KiB
 annobin-plugin-gcc       ppc64le 12.99-1.fc43         fedora       1.0 MiB
 cmake-filesystem         ppc64le 3.31.10-3.fc43       updates      0.0   B
 cpp                      ppc64le 15.2.1-5.fc43        updates     34.6 MiB
 emacs-filesystem         noarch  1:30.0-5.fc43        fedora       0.0   B
 expat                    ppc64le 2.7.3-1.fc43         updates    424.7 KiB
 gcc-plugin-annobin       ppc64le 15.2.1-5.fc43        updates     68.9 KiB
 gettext                  ppc64le 0.25.1-2.fc43        fedora      13.8 MiB
 gettext-common-devel     noarch  0.25.1-2.fc43        fedora     592.5 KiB
 gettext-devel            ppc64le 0.25.1-2.fc43        fedora       1.3 MiB
 gettext-envsubst         ppc64le 0.25.1-2.fc43        fedora     106.6 KiB
 gettext-libs             ppc64le 0.25.1-2.fc43        fedora       2.6 MiB
 gettext-runtime          ppc64le 0.25.1-2.fc43        fedora     507.9 KiB
 glibc-devel              ppc64le 2.42-9.fc43          updates      3.6 MiB
 groff-base               ppc64le 1.23.0-11.fc43       updates      4.5 MiB
 gsl                      ppc64le 2.8-2.fc43           fedora       4.4 MiB
 htslib                   ppc64le 1.23-1.fc43          copr_base    1.6 MiB
 kernel-headers           ppc64le 6.18.3-200.fc43      updates      6.7 MiB
 libasan                  ppc64le 15.2.1-5.fc43        updates      2.1 MiB
 libatomic                ppc64le 15.2.1-5.fc43        updates     68.2 KiB
 libmpc                   ppc64le 1.3.1-8.fc43         fedora     281.6 KiB
 libtextstyle             ppc64le 0.25.1-2.fc43        fedora     263.2 KiB
 libubsan                 ppc64le 15.2.1-5.fc43        updates    668.6 KiB
 libxcrypt-devel          ppc64le 4.5.2-1.fc43         updates     31.1 KiB
 m4                       ppc64le 1.4.20-2.fc43        fedora     923.4 KiB
 mpdecimal                ppc64le 4.0.1-2.fc43         fedora     281.2 KiB
 ncurses                  ppc64le 6.5-7.20250614.fc43  fedora     956.9 KiB
 perl-AutoLoader          noarch  5.74-520.fc43        fedora      20.6 KiB
 perl-AutoSplit           noarch  5.74-520.fc43        fedora      23.1 KiB
 perl-B                   ppc64le 1.89-520.fc43        fedora     545.2 KiB
 perl-Benchmark           noarch  1.27-520.fc43        fedora      36.4 KiB
 perl-Carp                noarch  1.54-520.fc43        fedora      46.6 KiB
 perl-Class-Struct        noarch  0.68-520.fc43        fedora      25.4 KiB
 perl-Data-Dumper         ppc64le 2.191-521.fc43       fedora     135.4 KiB
 perl-Devel-PPPort        ppc64le 3.73-521.fc43        fedora     981.7 KiB
 perl-Digest              noarch  1.20-520.fc43        fedora      35.3 KiB
 perl-Digest-MD5          ppc64le 2.59-520.fc43        fedora     103.4 KiB
 perl-DynaLoader          ppc64le 1.57-520.fc43        fedora      32.1 KiB
 perl-Encode              ppc64le 4:3.21-520.fc43      fedora       4.8 MiB
 perl-Errno               ppc64le 1.38-520.fc43        fedora       8.4 KiB
 perl-Exporter            noarch  5.79-520.fc43        fedora      54.3 KiB
 perl-ExtUtils-Command    noarch  2:7.76-521.fc43      fedora       9.6 KiB
 perl-ExtUtils-Constant   noarch  0.25-520.fc43        fedora      85.9 KiB
 perl-ExtUtils-Install    noarch  2.22-520.fc43        fedora      85.5 KiB
 perl-ExtUtils-MakeMaker  noarch  2:7.76-521.fc43      fedora     739.7 KiB
 perl-ExtUtils-Manifest   noarch  1:1.75-520.fc43      fedora      84.8 KiB
 perl-ExtUtils-ParseXS    noarch  1:3.58-2.fc43        fedora     539.6 KiB
 perl-Fcntl               ppc64le 1.20-520.fc43        fedora      92.5 KiB
 perl-File-Basename       noarch  2.86-520.fc43        fedora      14.0 KiB
 perl-File-Compare        noarch  1.100.800-520.fc43   fedora       5.6 KiB
 perl-File-Copy           noarch  2.41-520.fc43        fedora      19.7 KiB
 perl-File-Find           noarch  1.44-520.fc43        fedora      42.0 KiB
 perl-File-Path           noarch  2.18-520.fc43        fedora      63.5 KiB
 perl-File-stat           noarch  1.14-520.fc43        fedora      12.5 KiB
 perl-FileHandle          noarch  2.05-520.fc43        fedora       9.4 KiB
 perl-Getopt-Std          noarch  1.14-520.fc43        fedora      11.2 KiB
 perl-HTTP-Tiny           noarch  0.090-521.fc43       fedora     154.4 KiB
 perl-Hash-Util           ppc64le 0.32-520.fc43        fedora      98.7 KiB
 perl-Hash-Util-FieldHash ppc64le 1.27-520.fc43        fedora     106.4 KiB
 perl-IO                  ppc64le 1.55-520.fc43        fedora     191.1 KiB
 perl-IO-Socket-IP        noarch  0.43-521.fc43        fedora     100.3 KiB
 perl-IO-Socket-SSL       noarch  2.095-2.fc43         fedora     714.5 KiB
 perl-IPC-Open3           noarch  1.24-520.fc43        fedora      27.7 KiB
 perl-MIME-Base32         noarch  1.303-24.fc43        fedora      30.7 KiB
 perl-MIME-Base64         ppc64le 3.16-520.fc43        fedora      93.7 KiB
 perl-Net-SSLeay          ppc64le 1.94-11.fc43         fedora       1.5 MiB
 perl-POSIX               ppc64le 2.23-520.fc43        fedora     328.3 KiB
 perl-PathTools           ppc64le 3.94-520.fc43        fedora     223.9 KiB
 perl-Pod-Escapes         noarch  1:1.07-520.fc43      fedora      24.9 KiB
 perl-Pod-Perldoc         noarch  3.28.01-521.fc43     fedora     163.7 KiB
 perl-Pod-Simple          noarch  1:3.47-3.fc43        fedora     565.3 KiB
 perl-Pod-Usage           noarch  4:2.05-520.fc43      fedora      86.3 KiB
 perl-Scalar-List-Utils   ppc64le 5:1.70-1.fc43        fedora     152.6 KiB
 perl-SelectSaver         noarch  1.02-520.fc43        fedora       2.2 KiB
 perl-Socket              ppc64le 4:2.040-2.fc43       fedora     143.9 KiB
 perl-Storable            ppc64le 1:3.37-521.fc43      fedora     243.1 KiB
 perl-Symbol              noarch  1.09-520.fc43        fedora       6.8 KiB
 perl-Term-ANSIColor      noarch  5.01-521.fc43        fedora      97.5 KiB
 perl-Term-Cap            noarch  1.18-520.fc43        fedora      29.3 KiB
 perl-Test-Harness        noarch  1:3.52-4.fc43        fedora     560.8 KiB
 perl-Text-ParseWords     noarch  3.31-520.fc43        fedora      13.6 KiB
 perl-Text-Tabs+Wrap      noarch  2024.001-520.fc43    fedora      22.6 KiB
 perl-Thread-Queue        noarch  3.14-520.fc43        fedora      28.9 KiB
 perl-Time-Local          noarch  2:1.350-520.fc43     fedora      69.0 KiB
 perl-URI                 noarch  5.34-2.fc43          updates    268.0 KiB
 perl-base                noarch  2.27-520.fc43        fedora      12.6 KiB
 perl-constant            noarch  1.33-521.fc43        fedora      26.2 KiB
 perl-devel               ppc64le 4:5.42.0-520.fc43    fedora       3.8 MiB
 perl-fields              noarch  2.27-520.fc43        fedora      11.9 KiB
 perl-if                  noarch  0.61.000-520.fc43    fedora       5.8 KiB
 perl-lib                 ppc64le 0.65-520.fc43        fedora       8.5 KiB
 perl-libnet              noarch  3.15-521.fc43        fedora     289.4 KiB
 perl-libs                ppc64le 4:5.42.0-520.fc43    fedora      12.3 MiB
 perl-locale              noarch  1.13-520.fc43        fedora       6.1 KiB
 perl-mro                 ppc64le 1.29-520.fc43        fedora      81.2 KiB
 perl-overload            noarch  1.40-520.fc43        fedora      71.6 KiB
 perl-overloading         noarch  0.02-520.fc43        fedora       4.9 KiB
 perl-parent              noarch  1:0.244-520.fc43     fedora      10.3 KiB
 perl-podlators           noarch  1:6.0.2-520.fc43     fedora     317.5 KiB
 perl-threads             ppc64le 1:2.43-520.fc43      fedora     134.9 KiB
 perl-threads-shared      ppc64le 1.70-520.fc43        fedora     103.4 KiB
 perl-vars                noarch  1.05-520.fc43        fedora       3.9 KiB
 perl-version             ppc64le 9:0.99.33-521.fc43   fedora     160.4 KiB
 python-pip-wheel         noarch  25.1.1-18.fc43       fedora       1.2 MiB
 python3                  ppc64le 3.14.2-1.fc43        updates     84.8 KiB
 python3-libs             ppc64le 3.14.2-1.fc43        updates     46.4 MiB
 python3-pyparsing        noarch  3.1.2-14.fc43        fedora       1.0 MiB
 systemtap-sdt-devel      ppc64le 5.4-1.fc43           updates    184.0 KiB
 systemtap-sdt-dtrace     ppc64le 5.4-1.fc43           updates    180.6 KiB
 tzdata                   noarch  2025c-1.fc43         updates      1.6 MiB

Transaction Summary:
 Installing:       123 packages

Total size of inbound packages is 83 MiB. Need to download 22 MiB.
After this operation, 276 MiB extra will be used (install 276 MiB, remove 0 B).
[  1/123] make-1:4.4.1-11.fc43.ppc64le  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  2/123] perl-File-Temp-1:0.231.100-52 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  3/123] perl-FindBin-0:1.54-520.fc43. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  4/123] perl-Getopt-Long-1:2.58-520.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  5/123] perl-interpreter-4:5.42.0-520 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  6/123] gcc-0:15.2.1-5.fc43.ppc64le   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  7/123] htslib-devel-0:1.23-1.fc43.pp 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  8/123] htslib-tools-0:1.23-1.fc43.pp 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[  9/123] zlib-ng-compat-devel-0:2.3.2- 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 10/123] perl-Carp-0:1.54-520.fc43.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 11/123] perl-Class-Struct-0:0.68-520. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 12/123] perl-Data-Dumper-0:2.191-521. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 13/123] perl-Errno-0:1.38-520.fc43.pp 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 14/123] perl-Exporter-0:5.79-520.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 15/123] perl-File-Basename-0:2.86-520 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 16/123] perl-File-stat-0:1.14-520.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 17/123] perl-IO-0:1.55-520.fc43.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 18/123] perl-POSIX-0:2.23-520.fc43.pp 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 19/123] perl-PathTools-0:3.94-520.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 20/123] perl-Text-ParseWords-0:3.31-5 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 21/123] perl-constant-0:1.33-521.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 22/123] perl-libs-4:5.42.0-520.fc43.p 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 23/123] perl-File-Path-0:2.18-520.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 24/123] perl-Fcntl-0:1.20-520.fc43.pp 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 25/123] perl-Scalar-List-Utils-5:1.70 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 26/123] perl-overload-0:1.40-520.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 27/123] perl-parent-1:0.244-520.fc43. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 28/123] perl-Pod-Usage-4:2.05-520.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 29/123] perl-base-0:2.27-520.fc43.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 30/123] libmpc-0:1.3.1-8.fc43.ppc64le 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 31/123] cpp-0:15.2.1-5.fc43.ppc64le   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 32/123] htslib-0:1.23-1.fc43.ppc64le  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 33/123] perl-B-0:1.89-520.fc43.ppc64l 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 34/123] perl-Symbol-0:1.09-520.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 35/123] perl-SelectSaver-0:1.02-520.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 36/123] perl-Socket-4:2.040-2.fc43.pp 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 37/123] perl-locale-0:1.13-520.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 38/123] perl-DynaLoader-0:1.57-520.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 39/123] perl-Encode-4:3.21-520.fc43.p 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 40/123] perl-vars-0:1.05-520.fc43.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 41/123] perl-Text-Tabs+Wrap-0:2024.00 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 42/123] perl-mro-0:1.29-520.fc43.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 43/123] perl-overloading-0:0.02-520.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 44/123] perl-Pod-Perldoc-0:3.28.01-52 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 45/123] perl-podlators-1:6.0.2-520.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 46/123] perl-if-0:0.61.000-520.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 47/123] perl-Getopt-Std-0:1.14-520.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 48/123] perl-MIME-Base64-0:3.16-520.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 49/123] perl-Storable-1:3.37-521.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 50/123] perl-HTTP-Tiny-0:0.090-521.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 51/123] perl-IPC-Open3-0:1.24-520.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 52/123] perl-Pod-Simple-1:3.47-3.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 53/123] perl-Term-ANSIColor-0:5.01-52 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 54/123] perl-Term-Cap-0:1.18-520.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 55/123] perl-lib-0:0.65-520.fc43.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 56/123] perl-IO-Socket-SSL-0:2.095-2. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 57/123] perl-Net-SSLeay-0:1.94-11.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 58/123] perl-Time-Local-2:1.350-520.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 59/123] perl-Pod-Escapes-1:1.07-520.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 60/123] ncurses-0:6.5-7.20250614.fc43 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 61/123] perl-IO-Socket-IP-0:0.43-521. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 62/123] perl-AutoLoader-0:5.74-520.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 63/123] cmake-filesystem-0:3.31.10-3. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 64/123] glibc-devel-0:2.42-9.fc43.ppc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 65/123] libasan-0:15.2.1-5.fc43.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 66/123] libatomic-0:15.2.1-5.fc43.ppc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 67/123] libubsan-0:15.2.1-5.fc43.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 68/123] libxcrypt-devel-0:4.5.2-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 69/123] groff-base-0:1.23.0-11.fc43.p 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 70/123] perl-URI-0:5.34-2.fc43.noarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 71/123] perl-MIME-Base32-0:1.303-24.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 72/123] perl-libnet-0:3.15-521.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 73/123] perl-Digest-MD5-0:2.59-520.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 74/123] perl-FileHandle-0:2.05-520.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 75/123] perl-Digest-0:1.20-520.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 76/123] kernel-headers-0:6.18.3-200.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 77/123] annobin-plugin-gcc-0:12.99-1. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 78/123] gcc-plugin-annobin-0:15.2.1-5 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 79/123] annobin-docs-0:12.99-1.fc43.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded                                                          
[ 80/123] automake-0:1.18.1-2.fc43.noar 100% |  23.8 KiB/s | 723.5 KiB |  00m30s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fe
[ 81/123] gsl-devel-0:2.8-2.fc43.ppc64l 100% |  21.5 KiB/s | 654.9 KiB |  00m30s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fe
[ 82/123] perl-ExtUtils-Embed-0:1.35-52 100% | 190.1 KiB/s |  17.7 KiB |  00m00s
[ 83/123] emacs-filesystem-1:30.0-5.fc4 100% | 159.3 KiB/s |   7.5 KiB |  00m00s
[ 84/123] gettext-devel-0:0.25.1-2.fc43 100% |   2.3 MiB/s | 285.2 KiB |  00m00s
[ 85/123] m4-0:1.4.20-2.fc43.ppc64le    100% |   2.8 MiB/s | 344.5 KiB |  00m00s
[ 86/123] perl-File-Compare-0:1.100.800 100% | 331.4 KiB/s |  13.3 KiB |  00m00s
[ 87/123] perl-File-Copy-0:2.41-520.fc4 100% | 347.0 KiB/s |  20.1 KiB |  00m00s
[ 88/123] perl-File-Find-0:1.44-520.fc4 100% | 617.9 KiB/s |  25.3 KiB |  00m00s
[ 89/123] autoconf-0:2.72-7.fc43.noarch 100% |  27.1 KiB/s | 830.6 KiB |  00m31s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fe
[ 90/123] perl-Thread-Queue-0:3.14-520. 100% | 519.1 KiB/s |  21.3 KiB |  00m00s
[ 91/123] perl-threads-1:2.43-520.fc43. 100% |   1.4 MiB/s |  58.2 KiB |  00m00s
[ 92/123] gettext-0:0.25.1-2.fc43.ppc64 100% |  13.2 MiB/s |   1.7 MiB |  00m00s
[ 93/123] perl-devel-4:5.42.0-520.fc43. 100% |   4.8 MiB/s | 663.6 KiB |  00m00s
[ 94/123] gsl-0:2.8-2.fc43.ppc64le      100% |   5.6 MiB/s |   1.3 MiB |  00m00s
[ 95/123] gettext-libs-0:0.25.1-2.fc43. 100% |   9.2 MiB/s | 865.7 KiB |  00m00s
[ 96/123] gettext-common-devel-0:0.25.1 100% |   5.6 MiB/s | 601.7 KiB |  00m00s
[ 97/123] perl-threads-shared-0:1.70-52 100% |   1.1 MiB/s |  45.7 KiB |  00m00s
[ 98/123] perl-ExtUtils-Constant-0:0.25 100% | 654.2 KiB/s |  43.8 KiB |  00m00s
[ 99/123] perl-ExtUtils-Install-0:2.22- 100% | 677.9 KiB/s |  43.4 KiB |  00m00s
[100/123] perl-Devel-PPPort-0:3.73-521. 100% |   2.0 MiB/s | 222.1 KiB |  00m00s
[101/123] gettext-runtime-0:0.25.1-2.fc 100% |   1.4 MiB/s | 117.2 KiB |  00m00s
[102/123] perl-ExtUtils-ParseXS-1:3.58- 100% |   2.1 MiB/s | 220.7 KiB |  00m00s
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>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fe
[117/123] systemtap-sdt-dtrace-0:5.4-1. 100% | 700.0   B/s |  70.4 KiB |  01m43s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fe
>>> Curl error (28): Timeout was reached for http://fedora-mirror02.rbc.ru/pub/f
>>> Curl error (28): Timeout was reached for http://dl.fedoraproject.org/pub/fed
[118/123] mpdecimal-0:4.0.1-2.fc43.ppc6 100% |   1.3 MiB/s | 112.4 KiB |  00m00s
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>>> Curl error (28): Timeout was reached for http://fedora-mirror02.rbc.ru/pub/f
>>> Curl error (28): Timeout was reached for http://dl.fedoraproject.org/pub/fed
[123/123] systemtap-sdt-devel-0:5.4-1.f 100% | 550.0   B/s |  69.7 KiB |  02m10s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fe
>>> Curl error (28): Timeout was reached for http://fedora-mirror02.rbc.ru/pub/f
>>> Curl error (28): Timeout was reached for http://dl.fedoraproject.org/pub/fed
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fe
--------------------------------------------------------------------------------
[123/123] Total                         100% | 140.4 KiB/s |  22.1 MiB |  02m41s
Running transaction
[  1/125] Verify package files          100% |  97.0   B/s | 123.0   B |  00m01s
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[ 14/125] Installing python-pip-wheel-0 100% | 155.7 MiB/s |   1.2 MiB |  00m00s
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[ 18/125] Installing python3-pyparsing- 100% |  85.8 MiB/s |   1.0 MiB |  00m00s
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[ 89/125] Installing perl-Thread-Queue- 100% |  14.8 MiB/s |  30.4 KiB |  00m00s
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[113/125] Installing emacs-filesystem-1 100% | 531.2 KiB/s | 544.0   B |  00m00s
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[115/125] Installing make-1:4.4.1-11.fc 100% |  31.4 MiB/s |   1.9 MiB |  00m00s
[116/125] Installing gcc-0:15.2.1-5.fc4 100% | 124.9 MiB/s |  97.9 MiB |  00m01s
[117/125] Installing annobin-plugin-gcc 100% |  38.4 MiB/s |   1.0 MiB |  00m00s
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[125/125] Installing htslib-tools-0:1.2 100% |   8.8 MiB/s |   4.6 MiB |  00m01s
Warning: skipped OpenPGP checks for 3 packages from repository: copr_base
Complete!
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769385600
Wrote: /builddir/build/SRPMS/bcftools-1.23-1.fc43.src.rpm
Updating and loading repositories:
 Copr repository                        100% |   2.5 KiB/s |   1.5 KiB |  00m01s
 fedora                                 100% |  13.5 KiB/s |   9.2 KiB |  00m01s
 updates                                100% |  10.1 KiB/s |   6.4 KiB |  00m01s
Repositories loaded.
Nothing to do.
Package "autoconf-2.72-7.fc43.noarch" is already installed.
Package "automake-1.18.1-2.fc43.noarch" is already installed.
Package "gcc-15.2.1-5.fc43.ppc64le" is already installed.
Package "gsl-devel-2.8-2.fc43.ppc64le" is already installed.
Package "htslib-devel-1.23-1.fc43.ppc64le" is already installed.
Package "htslib-tools-1.23-1.fc43.ppc64le" is already installed.
Package "make-1:4.4.1-11.fc43.ppc64le" is already installed.
Package "perl-ExtUtils-Embed-1.35-520.fc43.noarch" is already installed.
Package "perl-File-Temp-1:0.231.100-520.fc43.noarch" is already installed.
Package "perl-FindBin-1.54-520.fc43.noarch" is already installed.
Package "perl-Getopt-Long-1:2.58-520.fc43.noarch" is already installed.
Package "perl-interpreter-4:5.42.0-520.fc43.ppc64le" is already installed.
Package "zlib-ng-compat-devel-2.3.2-2.fc43.ppc64le" is already installed.

Finish: build setup for bcftools-1.23-1.fc43.src.rpm
Start: rpmbuild bcftools-1.23-1.fc43.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769385600
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.q2I6kh
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.dDc4kG
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ rm -rf bcftools-1.23
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bcftools-1.23.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bcftools-1.23
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (bcftools-1.23-perl-fix-stray-errors-ldflags.patch):
+ echo 'Patch #0 (bcftools-1.23-perl-fix-stray-errors-ldflags.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file configure.ac
+ sed -i '1s|/usr/bin/env perl|/usr/bin/perl|' misc/color-chrs.pl misc/demo-flt.pl misc/run-roh.pl misc/vcfutils.pl misc/plot-vcfstats
+ sed -i '1s|/usr/bin/env python3\{0,1\}|/usr/bin/python3|' misc/gff2gff.py misc/guess-ploidy.py misc/plot-roh.py
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.mQSTPC
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.23
+ autoreconf -fiv
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force 
autoreconf: configure.ac: tracing
autoreconf: configure.ac: subdirectory $HTSDIR not present
autoreconf: configure.ac: not using Libtool
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: configure.ac: not needing autopoint
autoreconf: running: /usr/bin/autoconf --force
configure.ac:94: warning: _AC_CONFIG_SUBDIRS: you should use literals
./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:94: the top level
autoreconf: running: /usr/bin/autoheader --force
autoreconf: configure.ac: not using Automake
autoreconf: Leaving directory '.'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.23/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./htslib-1.23/config.guess
++ basename ./htslib-1.23/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./htslib-1.23/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './htslib-1.23/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.23/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./htslib-1.23/config.sub
++ basename ./htslib-1.23/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./htslib-1.23/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './htslib-1.23/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=ppc64le-redhat-linux --host=ppc64le-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  ' --prefix=/usr --with-htslib=system --enable-perl-filters --enable-libgsl '--with-bcf-plugin-path=/usr/local/libexec/bcftools:$(plugindir)'
checking for ppc64le-redhat-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for gcc option to enable large file support... none needed
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking shared library type... plain .so
checking for library containing dlopen... none required
checking if the compiler accepts -rdynamic... yes
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for gsl/gsl_version.h... yes
checking for library containing cblas_dgemm... -lgslcblas
checking for gsl_multifit_gradient in -lgsl... yes
configure: removing -specs=...redhat-hardened... from Perl options
checking for library containing Perl_call_pv... -lperl
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
configure: License has been changed to GPL.

Linking against the GNU scientific library requires that the resulting
binary is licensed using the GNU General Public License.  In particular,
this means you will have to follow the terms of this license in order
to distribute binary copies.  For more information see the INSTALL file.

Text of the GNU General Public License can be found in the LICENSE file,
or at http://www.gnu.org/copyleft/gpl.html

Information on the GNU Scientific Library, including the rationale for
its choice of license can be found at https://www.gnu.org/software/gsl/

+ /usr/bin/make -O -j5 V=1 VERBOSE=1
echo '#define BCFTOOLS_VERSION "1.23"' > version.h
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o tabix.o tabix.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfindex.o vcfindex.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfquery.o vcfquery.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfisec.o vcfisec.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcffilter.o vcffilter.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfsom.o vcfsom.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfstats.o vcfstats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfgtcheck.o vcfgtcheck.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfview.o vcfview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfroh.o vcfroh.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfnorm.o vcfnorm.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfconcat.o vcfconcat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfmerge.o vcfmerge.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcmp.o vcmp.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfcall.o vcfcall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o gvcf.o gvcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o mcall.o mcall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -c -o filter.o filter.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o tsv2vcf.o tsv2vcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfannotate.o vcfannotate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfhead.o vcfhead.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o reheader.o reheader.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o HMM.o HMM.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfcnv.o vcfcnv.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bin.o bin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o ploidy.o ploidy.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o hclust.o hclust.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o version.o version.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfconvert.o vcfconvert.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o smpl_ilist.o smpl_ilist.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o consensus.o consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o regidx.o regidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o convert.o convert.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfbuf.o vcfbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o mpileup.o mpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf.o bam2bcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf_indel.o bam2bcf_indel.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf_iaux.o bam2bcf_iaux.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o read_consensus.o read_consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o cols.o cols.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfsort.o vcfsort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o extsort.o extsort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o dist.o dist.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf_edlib.o bam2bcf_edlib.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam_sample.o bam_sample.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o ccall.o ccall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o em.o em.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o kmin.o kmin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o str_finder.o str_finder.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o prob1.o prob1.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o csq.o csq.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o edlib.o edlib.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o abuf.o abuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o mpileup2/mpileup.o mpileup2/mpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o test/test-rbuf.o test/test-rbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o peakfit.o peakfit.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.   -DPLUGINPATH='"/usr/local/libexec/bcftools:/usr/libexec/bcftools"' -c -o vcfplugin.o vcfplugin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o polysomy.o polysomy.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o test/test-regidx.o test/test-regidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o gff.o gff.c
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/GTsubset.so version.c plugins/GTsubset.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/add-variantkey.so version.c plugins/add-variantkey.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/GTisec.so version.c plugins/GTisec.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/allele-length.so version.c plugins/allele-length.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/af-dist.so bin.c version.c plugins/af-dist.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/check-ploidy.so version.c plugins/check-ploidy.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/check-sparsity.so version.c plugins/check-sparsity.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/counts.so version.c plugins/counts.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fill-AN-AC.so version.c plugins/fill-AN-AC.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/contrast.so version.c plugins/contrast.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/dosage.so version.c plugins/dosage.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/color-chrs.so HMM.c version.c plugins/color-chrs.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fixref.so version.c plugins/fixref.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/frameshifts.so version.c plugins/frameshifts.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fixploidy.so ploidy.c regidx.c version.c plugins/fixploidy.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fill-tags.so version.c plugins/fill-tags.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/guess-ploidy.so version.c plugins/guess-ploidy.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/gvcfz.so version.c plugins/gvcfz.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/impute-info.so version.c plugins/impute-info.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/ad-bias.so convert.c version.c plugins/ad-bias.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/missing2ref.so version.c plugins/missing2ref.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/isecGT.so smpl_ilist.c version.c plugins/isecGT.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/indel-stats.so version.c plugins/indel-stats.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/parental-origin.so version.c plugins/parental-origin.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/remove-overlaps.so version.c plugins/remove-overlaps.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/prune.so version.c plugins/prune.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/mendelian2.so version.c plugins/mendelian2.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/scatter.so version.c plugins/scatter.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/smpl-stats.so version.c plugins/smpl-stats.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/setGT.so version.c plugins/setGT.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/tag2tag.so version.c plugins/tag2tag.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/split.so version.c plugins/split.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/trio-switch-rate.so version.c plugins/trio-switch-rate.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/split-vep.so version.c plugins/split-vep.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/trio-stats.so version.c plugins/trio-stats.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/variant-distance.so version.c plugins/variant-distance.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/variantkey-hex.so version.c plugins/variantkey-hex.c 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.   -DUSE_GPL -c -o main.o main.c
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/trio-dnm2.so version.c plugins/trio-dnm2.c 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/test-rbuf test/test-rbuf.o -lz  
gcc  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/test-regidx test/test-regidx.o regidx.o -lhts -lpthread -lz  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/vrfs.so version.c plugins/vrfs.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fill-from-fasta.so filter.c version.c plugins/fill-from-fasta.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/vcf2table.so version.c plugins/vcf2table.c 
gcc -rdynamic  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o vcfhead.o HMM.o consensus.o ploidy.o bin.o hclust.o version.o regidx.o smpl_ilist.o csq.o vcfbuf.o mpileup.o bam2bcf.o bam2bcf_indel.o bam2bcf_iaux.o bam2bcf_edlib.o read_consensus.o bam_sample.o vcfsort.o cols.o extsort.o dist.o abuf.o ccall.o em.o prob1.o kmin.o str_finder.o gff.o edlib.o mpileup2/mpileup.o polysomy.o peakfit.o vcfplugin.o -lhts -lm -lz   -lgsl -lgslcblas -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fstack-protector-strong -L/usr/local/lib -L/usr/lib64/perl5/CORE -lperl -lpthread -lresolv -ldl -lm -lcrypt -lutil -lc -lpthread
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.w1CZPl
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ '[' /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
++ dirname /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/bcftools-1.23-build
+ mkdir /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.23
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/bcftools-1.23-build/BUILDROOT 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/bin /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/man/man1 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/libexec/bcftools
/usr/bin/install -p bcftools /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/bin
/usr/bin/install -p misc/color-chrs.pl misc/gff2gff misc/gff2gff.py misc/guess-ploidy.py misc/plot-vcfstats misc/plot-roh.py misc/roh-viz misc/run-roh.pl misc/vcfutils.pl misc/vrfs-variances /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/bin
/usr/bin/install -p -m 644 doc/bcftools.1 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/man/man1
/usr/bin/install -p plugins/*.so /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/libexec/bcftools
+ /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 1.23-1.fc43 --unique-debug-suffix -1.23-1.fc43.ppc64le --unique-debug-src-base bcftools-1.23-1.fc43.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23
find-debuginfo: starting
Extracting debug info from 42 files
DWARF-compressing 42 files
sepdebugcrcfix: Updated 42 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bcftools-1.23-1.fc43.ppc64le
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/vrfs-variances from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/roh-viz from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/gff2gff from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j5
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j5 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
Scanned 20 directories and 231 files,
               processed 1 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/bcftools-1.23-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.9BMwOW
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.23
+ ldd bcftools
+ grep -E '/lib(64)?(/lp64d)?/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x00007fff8fb10000)
+ make test
./test/test-rbuf
Inserted 1-9 starting at offset 5:
  5  6  7  8  9  0  1  2  3
  1  2  3  4  5  6  7  8  9
4th is 4
Deleting 1-2:
  7  8  9  0  1  2  3
  3  4  5  6  7  8  9
Prepending 0-8:
  8  9  0  1  2  3  4  5  6  7
  8  7  6  5  4  3  2  1  0  3
Expanding:
  8  9 10 11 12 13 14 15 16 17
  8  7  6  5  4  3  2  1  0  3
./test/test-regidx
REF_PATH=: ./test/test.pl --plugins --exec bgzip= --exec tabix= --htsdir= ${TEST_OPTS:-}
test_usage:
	bcftools
./test/test.pl: module IO::Pty not found; skipping usage tests
test_tabix:
	tabix /tmp/hxaz5Fc6uc/merge.a.vcf.gz 2:3199812-3199812
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/merge.a.bcf 2:3199812-3199812
.. ok

test_tabix:
	tabix /tmp/hxaz5Fc6uc/merge.a.vcf.gz 1:3000151-3000151
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/merge.a.bcf 1:3000151-3000151
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/hxaz5Fc6uc/large_chrom_csi_limit.bcf chr20
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/hxaz5Fc6uc/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/hxaz5Fc6uc/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/hxaz5Fc6uc/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/hxaz5Fc6uc/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/hxaz5Fc6uc/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/hxaz5Fc6uc/idx.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/hxaz5Fc6uc/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/hxaz5Fc6uc/idx.bcf.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/hxaz5Fc6uc/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/hxaz5Fc6uc/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/hxaz5Fc6uc/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/hxaz5Fc6uc/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/hxaz5Fc6uc/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/hxaz5Fc6uc/empty.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/hxaz5Fc6uc/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/hxaz5Fc6uc/empty.bcf.csi
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s - /tmp/hxaz5Fc6uc/check.vcf.gz | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s - | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/misc/plot-vcfstats -m /tmp/hxaz5Fc6uc/check.1.chk /tmp/hxaz5Fc6uc/check.2.chk /tmp/hxaz5Fc6uc/check.3.chk /tmp/hxaz5Fc6uc/check.4.chk | grep -v 'plot-vcfstats' | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s -  /tmp/hxaz5Fc6uc/stats.a.vcf.gz /tmp/hxaz5Fc6uc/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s B  /tmp/hxaz5Fc6uc/stats.a.vcf.gz /tmp/hxaz5Fc6uc/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s -  /tmp/hxaz5Fc6uc/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s - -i 'type="snp"'  /tmp/hxaz5Fc6uc/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s -  /tmp/hxaz5Fc6uc/stats.vaf.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -w 2 --no-version /tmp/hxaz5Fc6uc/isec.match-id.1.1.vcf.gz /tmp/hxaz5Fc6uc/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -w 2 -c id --no-version /tmp/hxaz5Fc6uc/isec.match-id.1.1.vcf.gz /tmp/hxaz5Fc6uc/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 /tmp/hxaz5Fc6uc/isec.a.vcf.gz /tmp/hxaz5Fc6uc/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -i"STRLEN(REF)==2" /tmp/hxaz5Fc6uc/isec.a.vcf.gz /tmp/hxaz5Fc6uc/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -c both /tmp/hxaz5Fc6uc/isec.a.vcf.gz /tmp/hxaz5Fc6uc/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -c any /tmp/hxaz5Fc6uc/isec.a.vcf.gz /tmp/hxaz5Fc6uc/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -C -c any /tmp/hxaz5Fc6uc/isec.a.vcf.gz /tmp/hxaz5Fc6uc/isec.b.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec --no-version   -T /tmp/hxaz5Fc6uc/isec.tab.gz /tmp/hxaz5Fc6uc/isec.a.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -Ob  -T /tmp/hxaz5Fc6uc/isec.tab.gz /tmp/hxaz5Fc6uc/isec.a.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/hxaz5Fc6uc/isec-miss.1.1.vcf.gz /tmp/hxaz5Fc6uc/isec-miss.1.2.vcf.gz /tmp/hxaz5Fc6uc/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/isec-miss.1.regs.txt -n +1 /tmp/hxaz5Fc6uc/isec-miss.1.1.vcf.gz /tmp/hxaz5Fc6uc/isec-miss.1.2.vcf.gz /tmp/hxaz5Fc6uc/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/hxaz5Fc6uc/isec-miss.2.1.vcf.gz /tmp/hxaz5Fc6uc/isec-miss.2.2.vcf.gz /tmp/hxaz5Fc6uc/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/isec-miss.1.regs.txt -n +1 /tmp/hxaz5Fc6uc/isec-miss.2.1.vcf.gz /tmp/hxaz5Fc6uc/isec-miss.2.2.vcf.gz /tmp/hxaz5Fc6uc/isec-miss.2.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.broken-gvcf.a.vcf.gz /tmp/hxaz5Fc6uc/merge.broken-gvcf.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.broken-gvcf.a.vcf.gz /tmp/hxaz5Fc6uc/merge.broken-gvcf.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.broken-gvcf.a.bcf /tmp/hxaz5Fc6uc/merge.broken-gvcf.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.broken-gvcf.a.bcf /tmp/hxaz5Fc6uc/merge.broken-gvcf.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.symbolic.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.symbolic.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.symbolic.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.symbolic.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.symbolic.1.a.bcf /tmp/hxaz5Fc6uc/merge.symbolic.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.symbolic.1.a.bcf /tmp/hxaz5Fc6uc/merge.symbolic.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/hxaz5Fc6uc/merge.multiallelics.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/hxaz5Fc6uc/merge.multiallelics.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/hxaz5Fc6uc/merge.multiallelics.1.a.bcf /tmp/hxaz5Fc6uc/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/hxaz5Fc6uc/merge.multiallelics.1.a.bcf /tmp/hxaz5Fc6uc/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/hxaz5Fc6uc/merge.multiallelics.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/hxaz5Fc6uc/merge.multiallelics.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/hxaz5Fc6uc/merge.multiallelics.1.a.bcf /tmp/hxaz5Fc6uc/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/hxaz5Fc6uc/merge.multiallelics.1.a.bcf /tmp/hxaz5Fc6uc/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/hxaz5Fc6uc/merge.12.a.vcf.gz /tmp/hxaz5Fc6uc/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/hxaz5Fc6uc/merge.12.a.vcf.gz /tmp/hxaz5Fc6uc/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/hxaz5Fc6uc/merge.12.a.bcf /tmp/hxaz5Fc6uc/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/hxaz5Fc6uc/merge.12.a.bcf /tmp/hxaz5Fc6uc/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/hxaz5Fc6uc/merge.12.a.vcf.gz /tmp/hxaz5Fc6uc/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/hxaz5Fc6uc/merge.12.a.vcf.gz /tmp/hxaz5Fc6uc/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/hxaz5Fc6uc/merge.12.a.bcf /tmp/hxaz5Fc6uc/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/hxaz5Fc6uc/merge.12.a.bcf /tmp/hxaz5Fc6uc/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.phased.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.phased.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.phased.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.phased.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.phased.1.a.bcf /tmp/hxaz5Fc6uc/merge.phased.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.phased.1.a.bcf /tmp/hxaz5Fc6uc/merge.phased.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.11.a.vcf.gz /tmp/hxaz5Fc6uc/merge.11.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.11.a.vcf.gz /tmp/hxaz5Fc6uc/merge.11.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.11.a.bcf /tmp/hxaz5Fc6uc/merge.11.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.11.a.bcf /tmp/hxaz5Fc6uc/merge.11.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AF:join /tmp/hxaz5Fc6uc/merge.join.a.vcf.gz /tmp/hxaz5Fc6uc/merge.join.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AF:join /tmp/hxaz5Fc6uc/merge.join.a.vcf.gz /tmp/hxaz5Fc6uc/merge.join.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AF:join /tmp/hxaz5Fc6uc/merge.join.a.bcf /tmp/hxaz5Fc6uc/merge.join.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AF:join /tmp/hxaz5Fc6uc/merge.join.a.bcf /tmp/hxaz5Fc6uc/merge.join.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-single /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-single /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-single /tmp/hxaz5Fc6uc/merge.LPL.a.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-single /tmp/hxaz5Fc6uc/merge.LPL.a.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 1 /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 1 /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 2 /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 2 /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 3 /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 3 /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 4 /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 4 /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 5 /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/hxaz5Fc6uc/merge.LPL.a.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.b.vcf.gz /tmp/hxaz5Fc6uc/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 5 /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/hxaz5Fc6uc/merge.LPL.a.bcf /tmp/hxaz5Fc6uc/merge.LPL.b.bcf /tmp/hxaz5Fc6uc/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/hxaz5Fc6uc/merge.a.vcf.gz /tmp/hxaz5Fc6uc/merge.b.vcf.gz /tmp/hxaz5Fc6uc/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/hxaz5Fc6uc/merge.a.vcf.gz /tmp/hxaz5Fc6uc/merge.b.vcf.gz /tmp/hxaz5Fc6uc/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/hxaz5Fc6uc/merge.a.bcf /tmp/hxaz5Fc6uc/merge.b.bcf /tmp/hxaz5Fc6uc/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/hxaz5Fc6uc/merge.a.bcf /tmp/hxaz5Fc6uc/merge.b.bcf /tmp/hxaz5Fc6uc/merge.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -Fx /tmp/hxaz5Fc6uc/merge.a.vcf.gz /tmp/hxaz5Fc6uc/merge.b.vcf.gz /tmp/hxaz5Fc6uc/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -Fx /tmp/hxaz5Fc6uc/merge.a.vcf.gz /tmp/hxaz5Fc6uc/merge.b.vcf.gz /tmp/hxaz5Fc6uc/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -Fx /tmp/hxaz5Fc6uc/merge.a.bcf /tmp/hxaz5Fc6uc/merge.b.bcf /tmp/hxaz5Fc6uc/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -Fx /tmp/hxaz5Fc6uc/merge.a.bcf /tmp/hxaz5Fc6uc/merge.b.bcf /tmp/hxaz5Fc6uc/merge.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -0 /tmp/hxaz5Fc6uc/merge.a.vcf.gz /tmp/hxaz5Fc6uc/merge.b.vcf.gz /tmp/hxaz5Fc6uc/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -0 /tmp/hxaz5Fc6uc/merge.a.vcf.gz /tmp/hxaz5Fc6uc/merge.b.vcf.gz /tmp/hxaz5Fc6uc/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -0 /tmp/hxaz5Fc6uc/merge.a.bcf /tmp/hxaz5Fc6uc/merge.b.bcf /tmp/hxaz5Fc6uc/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -0 /tmp/hxaz5Fc6uc/merge.a.bcf /tmp/hxaz5Fc6uc/merge.b.bcf /tmp/hxaz5Fc6uc/merge.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m none /tmp/hxaz5Fc6uc/merge.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m none /tmp/hxaz5Fc6uc/merge.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m none /tmp/hxaz5Fc6uc/merge.2.a.bcf /tmp/hxaz5Fc6uc/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m none /tmp/hxaz5Fc6uc/merge.2.a.bcf /tmp/hxaz5Fc6uc/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m both /tmp/hxaz5Fc6uc/merge.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m both /tmp/hxaz5Fc6uc/merge.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m both /tmp/hxaz5Fc6uc/merge.2.a.bcf /tmp/hxaz5Fc6uc/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m both /tmp/hxaz5Fc6uc/merge.2.a.bcf /tmp/hxaz5Fc6uc/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m all /tmp/hxaz5Fc6uc/merge.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m all /tmp/hxaz5Fc6uc/merge.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m all /tmp/hxaz5Fc6uc/merge.2.a.bcf /tmp/hxaz5Fc6uc/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m all /tmp/hxaz5Fc6uc/merge.2.a.bcf /tmp/hxaz5Fc6uc/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/hxaz5Fc6uc/merge.3.a.vcf.gz /tmp/hxaz5Fc6uc/merge.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/hxaz5Fc6uc/merge.3.a.vcf.gz /tmp/hxaz5Fc6uc/merge.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/hxaz5Fc6uc/merge.3.a.bcf /tmp/hxaz5Fc6uc/merge.3.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/hxaz5Fc6uc/merge.3.a.bcf /tmp/hxaz5Fc6uc/merge.3.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m id /tmp/hxaz5Fc6uc/merge.4.a.vcf.gz /tmp/hxaz5Fc6uc/merge.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m id /tmp/hxaz5Fc6uc/merge.4.a.vcf.gz /tmp/hxaz5Fc6uc/merge.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m id /tmp/hxaz5Fc6uc/merge.4.a.bcf /tmp/hxaz5Fc6uc/merge.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m id /tmp/hxaz5Fc6uc/merge.4.a.bcf /tmp/hxaz5Fc6uc/merge.4.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/gvcf.merge.1.vcf.gz /tmp/hxaz5Fc6uc/gvcf.merge.2.vcf.gz /tmp/hxaz5Fc6uc/gvcf.merge.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/gvcf.merge.1.vcf.gz /tmp/hxaz5Fc6uc/gvcf.merge.2.vcf.gz /tmp/hxaz5Fc6uc/gvcf.merge.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/gvcf.merge.1.bcf /tmp/hxaz5Fc6uc/gvcf.merge.2.bcf /tmp/hxaz5Fc6uc/gvcf.merge.3.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/gvcf.merge.1.bcf /tmp/hxaz5Fc6uc/gvcf.merge.2.bcf /tmp/hxaz5Fc6uc/gvcf.merge.3.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -m both,* /tmp/hxaz5Fc6uc/merge.gvcf.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -m both,* /tmp/hxaz5Fc6uc/merge.gvcf.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -m both,** /tmp/hxaz5Fc6uc/merge.gvcf.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -m both,** /tmp/hxaz5Fc6uc/merge.gvcf.2.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -i SRC:join /tmp/hxaz5Fc6uc/merge.gvcf.3.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -i SRC:join /tmp/hxaz5Fc6uc/merge.gvcf.3.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.4.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.4.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.4.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.4.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.4.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.5.a.vcf.gz /tmp/hxaz5Fc6uc/merge.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.5.a.vcf.gz /tmp/hxaz5Fc6uc/merge.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.5.a.bcf /tmp/hxaz5Fc6uc/merge.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.5.a.bcf /tmp/hxaz5Fc6uc/merge.5.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.6.a.vcf.gz /tmp/hxaz5Fc6uc/merge.6.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.6.a.vcf.gz /tmp/hxaz5Fc6uc/merge.6.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.6.a.bcf /tmp/hxaz5Fc6uc/merge.6.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.6.a.bcf /tmp/hxaz5Fc6uc/merge.6.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.7.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.7.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.7.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.7.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.7.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.8.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.8.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.8.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.8.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.8.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/hxaz5Fc6uc/merge.7.a.vcf.gz /tmp/hxaz5Fc6uc/merge.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/hxaz5Fc6uc/merge.7.a.vcf.gz /tmp/hxaz5Fc6uc/merge.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/hxaz5Fc6uc/merge.7.a.bcf /tmp/hxaz5Fc6uc/merge.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/hxaz5Fc6uc/merge.7.a.bcf /tmp/hxaz5Fc6uc/merge.7.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/hxaz5Fc6uc/merge.gvcf.9a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9c.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/hxaz5Fc6uc/merge.gvcf.9a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9c.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/hxaz5Fc6uc/merge.gvcf.9a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9b.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9c.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/hxaz5Fc6uc/merge.gvcf.9a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9b.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9c.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/hxaz5Fc6uc/merge.gvcf.9a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9c.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/hxaz5Fc6uc/merge.gvcf.9a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9c.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/hxaz5Fc6uc/merge.gvcf.9a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9b.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9c.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/hxaz5Fc6uc/merge.gvcf.9a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9b.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9c.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/hxaz5Fc6uc/merge.gvcf.9a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9c.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9d.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/hxaz5Fc6uc/merge.gvcf.9a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9c.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9d.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/hxaz5Fc6uc/merge.gvcf.9a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9b.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9c.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9d.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/hxaz5Fc6uc/merge.gvcf.9a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9b.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9c.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9d.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/hxaz5Fc6uc/merge.gvcf.9a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9c.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9d.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/hxaz5Fc6uc/merge.gvcf.9a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9c.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9d.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/hxaz5Fc6uc/merge.gvcf.9a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9b.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9c.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9d.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/hxaz5Fc6uc/merge.gvcf.9a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9b.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9c.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9d.bcf /tmp/hxaz5Fc6uc/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.gvcf.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.gvcf.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.gvcf.10.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.gvcf.10.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/hxaz5Fc6uc/merge.gvcf.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/hxaz5Fc6uc/merge.gvcf.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/hxaz5Fc6uc/merge.gvcf.10.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/hxaz5Fc6uc/merge.gvcf.10.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/hxaz5Fc6uc/merge.gvcf.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/hxaz5Fc6uc/merge.gvcf.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/hxaz5Fc6uc/merge.gvcf.10.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/hxaz5Fc6uc/merge.gvcf.10.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/hxaz5Fc6uc/merge.gvcf.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/hxaz5Fc6uc/merge.gvcf.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/hxaz5Fc6uc/merge.gvcf.10.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/hxaz5Fc6uc/merge.gvcf.10.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.noidx.a.vcf.gz /tmp/hxaz5Fc6uc/merge.noidx.b.vcf.gz /tmp/hxaz5Fc6uc/merge.noidx.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.noidx.a.vcf.gz /tmp/hxaz5Fc6uc/merge.noidx.b.vcf.gz /tmp/hxaz5Fc6uc/merge.noidx.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.noidx.a.bcf /tmp/hxaz5Fc6uc/merge.noidx.b.bcf /tmp/hxaz5Fc6uc/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.noidx.a.bcf /tmp/hxaz5Fc6uc/merge.noidx.b.bcf /tmp/hxaz5Fc6uc/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --no-index /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.c.vcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --no-index /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.c.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --no-index /tmp/hxaz5Fc6uc/merge.noidx.a.bcf /tmp/hxaz5Fc6uc/merge.noidx.b.bcf /tmp/hxaz5Fc6uc/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --no-index /tmp/hxaz5Fc6uc/merge.noidx.a.bcf /tmp/hxaz5Fc6uc/merge.noidx.b.bcf /tmp/hxaz5Fc6uc/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.8.a.vcf.gz /tmp/hxaz5Fc6uc/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.8.a.vcf.gz /tmp/hxaz5Fc6uc/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.8.a.bcf /tmp/hxaz5Fc6uc/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.8.a.bcf /tmp/hxaz5Fc6uc/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/hxaz5Fc6uc/merge.8.a.vcf.gz /tmp/hxaz5Fc6uc/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/hxaz5Fc6uc/merge.8.a.vcf.gz /tmp/hxaz5Fc6uc/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/hxaz5Fc6uc/merge.8.a.bcf /tmp/hxaz5Fc6uc/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/hxaz5Fc6uc/merge.8.a.bcf /tmp/hxaz5Fc6uc/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.9.a.vcf.gz /tmp/hxaz5Fc6uc/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.9.a.vcf.gz /tmp/hxaz5Fc6uc/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/hxaz5Fc6uc/merge.9.a.bcf /tmp/hxaz5Fc6uc/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/hxaz5Fc6uc/merge.9.a.bcf /tmp/hxaz5Fc6uc/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/hxaz5Fc6uc/merge.9.a.vcf.gz /tmp/hxaz5Fc6uc/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/hxaz5Fc6uc/merge.9.a.vcf.gz /tmp/hxaz5Fc6uc/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/hxaz5Fc6uc/merge.9.a.bcf /tmp/hxaz5Fc6uc/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/hxaz5Fc6uc/merge.9.a.bcf /tmp/hxaz5Fc6uc/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/hxaz5Fc6uc/merge.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/hxaz5Fc6uc/merge.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/hxaz5Fc6uc/merge.10.a.bcf /tmp/hxaz5Fc6uc/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/hxaz5Fc6uc/merge.10.a.bcf /tmp/hxaz5Fc6uc/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m both /tmp/hxaz5Fc6uc/merge.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m both /tmp/hxaz5Fc6uc/merge.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m both /tmp/hxaz5Fc6uc/merge.10.a.bcf /tmp/hxaz5Fc6uc/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m both /tmp/hxaz5Fc6uc/merge.10.a.bcf /tmp/hxaz5Fc6uc/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m snp-ins-del /tmp/hxaz5Fc6uc/merge.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m snp-ins-del /tmp/hxaz5Fc6uc/merge.10.a.vcf.gz /tmp/hxaz5Fc6uc/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m snp-ins-del /tmp/hxaz5Fc6uc/merge.10.a.bcf /tmp/hxaz5Fc6uc/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m snp-ins-del /tmp/hxaz5Fc6uc/merge.10.a.bcf /tmp/hxaz5Fc6uc/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.mrules.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.mrules.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.mrules.1.a.bcf /tmp/hxaz5Fc6uc/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.mrules.1.a.bcf /tmp/hxaz5Fc6uc/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/hxaz5Fc6uc/merge.mrules.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/hxaz5Fc6uc/merge.mrules.1.a.vcf.gz /tmp/hxaz5Fc6uc/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/hxaz5Fc6uc/merge.mrules.1.a.bcf /tmp/hxaz5Fc6uc/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/hxaz5Fc6uc/merge.mrules.1.a.bcf /tmp/hxaz5Fc6uc/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.5.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.5.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.5.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.5.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - --merge none /tmp/hxaz5Fc6uc/merge.gvcf.5.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/hxaz5Fc6uc/merge.gvcf.5.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - --merge none /tmp/hxaz5Fc6uc/merge.gvcf.5.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/hxaz5Fc6uc/merge.gvcf.5.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.11.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.11.b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.11.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.11.a.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.11.b.vcf.gz /tmp/hxaz5Fc6uc/merge.gvcf.11.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.11.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.11.b.bcf /tmp/hxaz5Fc6uc/merge.gvcf.11.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/hxaz5Fc6uc/merge.gvcf.11.a.bcf /tmp/hxaz5Fc6uc/merge.gvcf.11.b.bcf /tmp/hxaz5Fc6uc/merge.gvcf.11.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' /tmp/hxaz5Fc6uc/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1' /tmp/hxaz5Fc6uc/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"' /tmp/hxaz5Fc6uc/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1' /tmp/hxaz5Fc6uc/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]="."' /tmp/hxaz5Fc6uc/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]~"\."' /tmp/hxaz5Fc6uc/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!="."' /tmp/hxaz5Fc6uc/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!~"\."' /tmp/hxaz5Fc6uc/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER' /tmp/hxaz5Fc6uc/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]' /tmp/hxaz5Fc6uc/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]' /tmp/hxaz5Fc6uc/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' /tmp/hxaz5Fc6uc/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."' /tmp/hxaz5Fc6uc/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"' /tmp/hxaz5Fc6uc/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)' /tmp/hxaz5Fc6uc/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)' /tmp/hxaz5Fc6uc/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]' /tmp/hxaz5Fc6uc/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]' /tmp/hxaz5Fc6uc/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"' /tmp/hxaz5Fc6uc/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"' /tmp/hxaz5Fc6uc/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"' /tmp/hxaz5Fc6uc/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.1.txt' /tmp/hxaz5Fc6uc/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.1.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.2.txt' /tmp/hxaz5Fc6uc/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.2.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%RSX\t%VKX\n' /tmp/hxaz5Fc6uc/query.variantkey.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.variantkey.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%RSX\t%VKX\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRI\n' -i'XRI[*]>1111' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRI\n' -i'XRI[*]>1111'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRF\n' -i'XRF[*]=2e6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[2]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' /tmp/hxaz5Fc6uc/view.vectors.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.vectors.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"' /tmp/hxaz5Fc6uc/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"' /tmp/hxaz5Fc6uc/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"' /tmp/hxaz5Fc6uc/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"' /tmp/hxaz5Fc6uc/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' /tmp/hxaz5Fc6uc/query.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT="."'  -f'%POS %IINT\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT!="."' -f'%POS %IINT\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT!="."' -f'%POS %IINT\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT="."'  -f'%POS %IINT\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n' /tmp/hxaz5Fc6uc/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n' /tmp/hxaz5Fc6uc/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n' /tmp/hxaz5Fc6uc/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n' /tmp/hxaz5Fc6uc/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%LINE' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%LINE'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"' /tmp/hxaz5Fc6uc/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"' /tmp/hxaz5Fc6uc/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"' /tmp/hxaz5Fc6uc/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"' /tmp/hxaz5Fc6uc/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"' /tmp/hxaz5Fc6uc/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/hxaz5Fc6uc/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/hxaz5Fc6uc/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n' /tmp/hxaz5Fc6uc/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"' /tmp/hxaz5Fc6uc/query.filter.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2' /tmp/hxaz5Fc6uc/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."' /tmp/hxaz5Fc6uc/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1' /tmp/hxaz5Fc6uc/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"' /tmp/hxaz5Fc6uc/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"' /tmp/hxaz5Fc6uc/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1' /tmp/hxaz5Fc6uc/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12' /tmp/hxaz5Fc6uc/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"' /tmp/hxaz5Fc6uc/query.filter.4.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.4.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.56.out' /tmp/hxaz5Fc6uc/view.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/view.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.56.out'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01' /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01' /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01' /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10' /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210' /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30' /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2' /tmp/hxaz5Fc6uc/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2' /tmp/hxaz5Fc6uc/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"' /tmp/hxaz5Fc6uc/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"' /tmp/hxaz5Fc6uc/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."' /tmp/hxaz5Fc6uc/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)' /tmp/hxaz5Fc6uc/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)' /tmp/hxaz5Fc6uc/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)' /tmp/hxaz5Fc6uc/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)' /tmp/hxaz5Fc6uc/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1' /tmp/hxaz5Fc6uc/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1' /tmp/hxaz5Fc6uc/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1' /tmp/hxaz5Fc6uc/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1' /tmp/hxaz5Fc6uc/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0' /tmp/hxaz5Fc6uc/query.pbinom.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.pbinom.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904' /tmp/hxaz5Fc6uc/query.filter.6.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.6.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6' /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7' /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2' /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75' /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2' /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75' /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2' /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5' /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1' /tmp/hxaz5Fc6uc/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1' /tmp/hxaz5Fc6uc/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]' /tmp/hxaz5Fc6uc/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]' /tmp/hxaz5Fc6uc/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5' /tmp/hxaz5Fc6uc/query.filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2' /tmp/hxaz5Fc6uc/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2' /tmp/hxaz5Fc6uc/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n' /tmp/hxaz5Fc6uc/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0 /tmp/hxaz5Fc6uc/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3 /tmp/hxaz5Fc6uc/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/hxaz5Fc6uc/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/hxaz5Fc6uc/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/hxaz5Fc6uc/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/hxaz5Fc6uc/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt /tmp/hxaz5Fc6uc/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt /tmp/hxaz5Fc6uc/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID~"s12"' /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID~"s12"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="rs123"' /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="rs123"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="abc"' /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt' /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!="abc"' /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt' /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%FILTER\n' /tmp/hxaz5Fc6uc/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%FILTER\n' /tmp/hxaz5Fc6uc/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A;B"' -f'%FILTER\n' /tmp/hxaz5Fc6uc/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n' /tmp/hxaz5Fc6uc/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n' /tmp/hxaz5Fc6uc/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n' /tmp/hxaz5Fc6uc/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'DP%10==2' -f'[ %DP]\n' /tmp/hxaz5Fc6uc/filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'DP%10==2' -f'[ %DP]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n' /tmp/hxaz5Fc6uc/filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]' /tmp/hxaz5Fc6uc/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n' /tmp/hxaz5Fc6uc/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n' /tmp/hxaz5Fc6uc/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]' /tmp/hxaz5Fc6uc/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n' /tmp/hxaz5Fc6uc/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/hxaz5Fc6uc/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/hxaz5Fc6uc/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2' /tmp/hxaz5Fc6uc/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2' /tmp/hxaz5Fc6uc/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2'
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s /tmp/hxaz5Fc6uc/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.check-ref.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s /tmp/hxaz5Fc6uc/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.check-ref.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/hxaz5Fc6uc/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/hxaz5Fc6uc/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/hxaz5Fc6uc/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/hxaz5Fc6uc/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/hxaz5Fc6uc/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/hxaz5Fc6uc/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/hxaz5Fc6uc/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/hxaz5Fc6uc/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c e /tmp/hxaz5Fc6uc/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c e /tmp/hxaz5Fc6uc/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.breakend.1.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.breakend.1.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -S lex /tmp/hxaz5Fc6uc/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -S lex /tmp/hxaz5Fc6uc/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/hxaz5Fc6uc/norm.join-missing-ploidy.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/hxaz5Fc6uc/norm.join-missing-ploidy.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/hxaz5Fc6uc/norm.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/hxaz5Fc6uc/norm.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version  /tmp/hxaz5Fc6uc/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version  /tmp/hxaz5Fc6uc/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -cx /tmp/hxaz5Fc6uc/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -cx /tmp/hxaz5Fc6uc/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/hxaz5Fc6uc/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/hxaz5Fc6uc/norm.split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/hxaz5Fc6uc/norm.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/hxaz5Fc6uc/norm.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --force /tmp/hxaz5Fc6uc/norm.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --force /tmp/hxaz5Fc6uc/norm.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/hxaz5Fc6uc/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/hxaz5Fc6uc/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --keep-sum AD /tmp/hxaz5Fc6uc/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --keep-sum AD /tmp/hxaz5Fc6uc/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/hxaz5Fc6uc/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/hxaz5Fc6uc/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/hxaz5Fc6uc/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/hxaz5Fc6uc/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/hxaz5Fc6uc/norm.merge.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/hxaz5Fc6uc/norm.merge.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/hxaz5Fc6uc/norm.merge.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/hxaz5Fc6uc/norm.merge.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ -s /tmp/hxaz5Fc6uc/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ -s /tmp/hxaz5Fc6uc/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -Nc s /tmp/hxaz5Fc6uc/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -Nc s /tmp/hxaz5Fc6uc/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version /tmp/hxaz5Fc6uc/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version /tmp/hxaz5Fc6uc/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/hxaz5Fc6uc/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d any /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d any /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/hxaz5Fc6uc/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/hxaz5Fc6uc/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/hxaz5Fc6uc/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/hxaz5Fc6uc/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/hxaz5Fc6uc/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/hxaz5Fc6uc/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/hxaz5Fc6uc/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/hxaz5Fc6uc/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.iupac.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/hxaz5Fc6uc/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.iupac.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/hxaz5Fc6uc/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/hxaz5Fc6uc/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/hxaz5Fc6uc/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/hxaz5Fc6uc/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --force
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --force -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/hxaz5Fc6uc/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/hxaz5Fc6uc/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/hxaz5Fc6uc/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/hxaz5Fc6uc/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . /tmp/hxaz5Fc6uc/atomize.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . /tmp/hxaz5Fc6uc/atomize.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/hxaz5Fc6uc/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/hxaz5Fc6uc/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/hxaz5Fc6uc/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/hxaz5Fc6uc/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/hxaz5Fc6uc/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/hxaz5Fc6uc/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/hxaz5Fc6uc/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/hxaz5Fc6uc/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/hxaz5Fc6uc/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/hxaz5Fc6uc/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/hxaz5Fc6uc/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/hxaz5Fc6uc/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/hxaz5Fc6uc/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/hxaz5Fc6uc/norm.m-any.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/hxaz5Fc6uc/norm.m-any.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/hxaz5Fc6uc/norm.phased-split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/hxaz5Fc6uc/norm.phased-split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/hxaz5Fc6uc/norm.phased-join.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/hxaz5Fc6uc/norm.phased-join.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/hxaz5Fc6uc/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/hxaz5Fc6uc/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/hxaz5Fc6uc/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/hxaz5Fc6uc/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/hxaz5Fc6uc/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/hxaz5Fc6uc/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.gff /tmp/hxaz5Fc6uc/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.gff /tmp/hxaz5Fc6uc/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/hxaz5Fc6uc/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.atom-split-norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/hxaz5Fc6uc/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.atom-split-norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/hxaz5Fc6uc/norm.string-tags.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/hxaz5Fc6uc/norm.string-tags.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +indels
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +indels -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -i 'type="snp"' /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -i 'type="snp"' /tmp/hxaz5Fc6uc/norm.split.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/hxaz5Fc6uc/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/hxaz5Fc6uc/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/hxaz5Fc6uc/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/hxaz5Fc6uc/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/hxaz5Fc6uc/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/hxaz5Fc6uc/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/hxaz5Fc6uc/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/hxaz5Fc6uc/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -HA /tmp/hxaz5Fc6uc/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -HAA /tmp/hxaz5Fc6uc/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r 1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r 1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r 1:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r 1:1-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r 1:1,1:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r 1:1,1:2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r 1:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r 1:1-1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1} | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1}:1-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1}:1-1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1-1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1-1} | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1-1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1-1}:1-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1-1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1-1}:1-1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1-1}-2
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/weird-chr-names.vcf.gz -r {1:1-1}-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -aUc1 -C1 -s NA00002 -v snps /tmp/hxaz5Fc6uc/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -aUc1 -C1 -s NA00002 -v snps /tmp/hxaz5Fc6uc/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -f PASS -Xks NA00003 /tmp/hxaz5Fc6uc/view.vcf.gz -r20,Y
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -f PASS -Xks NA00003 /tmp/hxaz5Fc6uc/view.vcf.gz -r20,Y | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -xs NA00003 /tmp/hxaz5Fc6uc/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -xs NA00003 /tmp/hxaz5Fc6uc/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/hxaz5Fc6uc/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/hxaz5Fc6uc/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -p /tmp/hxaz5Fc6uc/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -p /tmp/hxaz5Fc6uc/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -P /tmp/hxaz5Fc6uc/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -P /tmp/hxaz5Fc6uc/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -hm2 -M2 -q0.3 -Q0.7 /tmp/hxaz5Fc6uc/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -hm2 -M2 -q0.3 -Q0.7 /tmp/hxaz5Fc6uc/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Hu /tmp/hxaz5Fc6uc/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -GVsnps /tmp/hxaz5Fc6uc/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -GVsnps /tmp/hxaz5Fc6uc/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -ne 'INDEL=1 || PV4[0]<0.006' /tmp/hxaz5Fc6uc/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -ne 'INDEL=1 || PV4[0]<0.006' /tmp/hxaz5Fc6uc/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -s ^NA00003 /tmp/hxaz5Fc6uc/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -s ^NA00003 /tmp/hxaz5Fc6uc/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/hxaz5Fc6uc/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/hxaz5Fc6uc/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -G /tmp/hxaz5Fc6uc/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -G /tmp/hxaz5Fc6uc/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -HG /tmp/hxaz5Fc6uc/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -a /tmp/hxaz5Fc6uc/many.alleles.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -a /tmp/hxaz5Fc6uc/many.alleles.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -asA /tmp/hxaz5Fc6uc/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -asA /tmp/hxaz5Fc6uc/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -asB /tmp/hxaz5Fc6uc/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -asB /tmp/hxaz5Fc6uc/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -asA /tmp/hxaz5Fc6uc/view.vectors.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -asA /tmp/hxaz5Fc6uc/view.vectors.2.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FGS[*:0]="AAAAAA"' /tmp/hxaz5Fc6uc/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FGS[*:2]="C"' /tmp/hxaz5Fc6uc/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FGS[*:4]="EE"' /tmp/hxaz5Fc6uc/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FRS[*:1]="BB"' /tmp/hxaz5Fc6uc/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'TXT0="text"' /tmp/hxaz5Fc6uc/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.chrs.tab /tmp/hxaz5Fc6uc/view.chrs.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.chrs.tab /tmp/hxaz5Fc6uc/view.chrs.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'POS>=3062917' /tmp/hxaz5Fc6uc/filter.2.vcf.gz 1:3062917-3157410
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'POS>=3062917' /tmp/hxaz5Fc6uc/filter.2.vcf.gz 1:3062917-3157410 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r 1:10,1:12,1:10 /tmp/hxaz5Fc6uc/idx.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r 1:1172777-1172804,1:1172806-1172808 /tmp/hxaz5Fc6uc/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/idx.2.bed /tmp/hxaz5Fc6uc/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/idx.3.bed /tmp/hxaz5Fc6uc/idx.3.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/idx.4.bed /tmp/hxaz5Fc6uc/idx.4.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ht 2 /tmp/hxaz5Fc6uc/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ht 3 /tmp/hxaz5Fc6uc/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 0 /tmp/hxaz5Fc6uc/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 1 /tmp/hxaz5Fc6uc/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 2 /tmp/hxaz5Fc6uc/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 0 /tmp/hxaz5Fc6uc/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 1 /tmp/hxaz5Fc6uc/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 2 /tmp/hxaz5Fc6uc/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 0 /tmp/hxaz5Fc6uc/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 1 /tmp/hxaz5Fc6uc/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 2 /tmp/hxaz5Fc6uc/overlap.vcf.gz 
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.1.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.1.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.1.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.2.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.2.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.2.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.3.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.3.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.4.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.4.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.4.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.5.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.5.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.5.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -C5:nonmajor /tmp/hxaz5Fc6uc/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -c6:nonmajor /tmp/hxaz5Fc6uc/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -q0.3:major /tmp/hxaz5Fc6uc/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i 'Gene.refGene=="RAD21L1"' /tmp/hxaz5Fc6uc/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i 'Gene.refGene~"NOD"' /tmp/hxaz5Fc6uc/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i 'LJB2_MutationTaster=="0.291000"' /tmp/hxaz5Fc6uc/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -a /tmp/hxaz5Fc6uc/view-a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt /tmp/hxaz5Fc6uc/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt /tmp/hxaz5Fc6uc/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt.gz /tmp/hxaz5Fc6uc/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt.gz /tmp/hxaz5Fc6uc/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 5 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 22 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 23 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -n 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -n 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -n 5 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 5 -n 5 < /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s0 /tmp/hxaz5Fc6uc/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ob /tmp/hxaz5Fc6uc/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s0
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s1 /tmp/hxaz5Fc6uc/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ob /tmp/hxaz5Fc6uc/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s1
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s2 -h2 /tmp/hxaz5Fc6uc/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ob /tmp/hxaz5Fc6uc/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s2 -h2
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s sample1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s sample1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mg0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mg0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.1.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/hxaz5Fc6uc/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.2.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'ALT="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'ALT="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="A"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="A"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="RR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="RR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="RA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="RA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="AR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="AR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="AA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="AA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="aA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="aA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="HET"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="HET"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.7.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.7.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -m 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -Ob -m 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -m 1000 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -Ob -m 1000 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/regions.tab /tmp/hxaz5Fc6uc/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/regions.tab
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/regions.tab /tmp/hxaz5Fc6uc/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/hxaz5Fc6uc/regions.tab.gz /tmp/hxaz5Fc6uc/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/hxaz5Fc6uc/regions.tab.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/hxaz5Fc6uc/regions.tab.gz /tmp/hxaz5Fc6uc/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/hxaz5Fc6uc/regions.bed /tmp/hxaz5Fc6uc/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/hxaz5Fc6uc/regions.bed
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/hxaz5Fc6uc/regions.bed /tmp/hxaz5Fc6uc/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/hxaz5Fc6uc/regions.bed.gz /tmp/hxaz5Fc6uc/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/hxaz5Fc6uc/regions.bed.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/hxaz5Fc6uc/regions.bed.gz /tmp/hxaz5Fc6uc/regions.vcf.gz
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/hxaz5Fc6uc/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/hxaz5Fc6uc/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/hxaz5Fc6uc/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/hxaz5Fc6uc/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x FORMAT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x FORMAT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots4.vcf.gz  -c +INFO /tmp/hxaz5Fc6uc/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots4.vcf.gz  -c +INFO /tmp/hxaz5Fc6uc/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots11.vcf.gz  -c FMT /tmp/hxaz5Fc6uc/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots11.vcf.gz  -c FMT /tmp/hxaz5Fc6uc/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/hxaz5Fc6uc/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/hxaz5Fc6uc/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate20.src.vcf.gz  -c  FMT/GT /tmp/hxaz5Fc6uc/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate20.src.vcf.gz  -c  FMT/GT /tmp/hxaz5Fc6uc/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate20.src.vcf.gz  -c +FMT/GT /tmp/hxaz5Fc6uc/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate20.src.vcf.gz  -c +FMT/GT /tmp/hxaz5Fc6uc/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate20.src.vcf.gz  -c -FMT/GT /tmp/hxaz5Fc6uc/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate20.src.vcf.gz  -c -FMT/GT /tmp/hxaz5Fc6uc/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   --rename-annots /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   --rename-annots /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/hxaz5Fc6uc/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/hxaz5Fc6uc/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate24.src.vcf.gz  -c XX /tmp/hxaz5Fc6uc/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate24.src.vcf.gz  -c XX /tmp/hxaz5Fc6uc/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots.id.vcf.gz  -c ALT /tmp/hxaz5Fc6uc/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots.id.vcf.gz  -c ALT /tmp/hxaz5Fc6uc/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots.id.vcf.gz  -c +ALT /tmp/hxaz5Fc6uc/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots.id.vcf.gz  -c +ALT /tmp/hxaz5Fc6uc/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/hxaz5Fc6uc/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/hxaz5Fc6uc/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/hxaz5Fc6uc/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/hxaz5Fc6uc/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/hxaz5Fc6uc/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/hxaz5Fc6uc/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/hxaz5Fc6uc/checkploidy.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/hxaz5Fc6uc/checkploidy.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/hxaz5Fc6uc/checkploidy.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/hxaz5Fc6uc/checkploidy.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/hxaz5Fc6uc/checkploidy.2.vcf.gz -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/hxaz5Fc6uc/checkploidy.2.bcf -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +missing2ref --no-version /tmp/hxaz5Fc6uc/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +missing2ref --no-version /tmp/hxaz5Fc6uc/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/plugin1.vcf.gz -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/plugin1.bcf -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.vcf.gz -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.bcf -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.2.vcf.gz -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.2.bcf -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.vcf.gz -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.bcf -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.vcf.gz -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.bcf -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.vcf.gz -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.bcf -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.vcf.gz -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.bcf -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.vcf.gz -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.bcf -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.vcf.gz -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.bcf -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.vcf.gz -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.3.bcf -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.4.bcf -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.4.bcf -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.5.vcf.gz -- -t a -n X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.5.bcf -- -t a -n X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.5.vcf.gz -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.5.bcf -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.6.vcf.gz -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.6.bcf -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.6.vcf.gz -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.6.bcf -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.6.vcf.gz -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/hxaz5Fc6uc/setGT.6.bcf -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-AN-AC --no-version /tmp/hxaz5Fc6uc/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-AN-AC --no-version /tmp/hxaz5Fc6uc/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/hxaz5Fc6uc/dosage.vcf.gz -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/hxaz5Fc6uc/dosage.bcf -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/hxaz5Fc6uc/dosage.vcf.gz -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/hxaz5Fc6uc/dosage.bcf -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/hxaz5Fc6uc/dosage.vcf.gz -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/hxaz5Fc6uc/dosage.bcf -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixploidy --no-version /tmp/hxaz5Fc6uc/fixploidy.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixploidy --no-version /tmp/hxaz5Fc6uc/fixploidy.bcf -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/hxaz5Fc6uc/view.PL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/hxaz5Fc6uc/view.PL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/hxaz5Fc6uc/view.GL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/hxaz5Fc6uc/view.GL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/view.GL.vcf.gz -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/view.GL.bcf -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/view.GL.vcf.gz -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/view.GL.bcf -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/view.GP.vcf.gz -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/view.GP.bcf -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/tag2tag.LPL.1.bcf -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/tag2tag.LPL.1.bcf -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/hxaz5Fc6uc/tag2tag.LPL.1.bcf -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +add-variantkey /tmp/hxaz5Fc6uc/query.variantkey.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +add-variantkey /tmp/hxaz5Fc6uc/query.variantkey.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variantkey-hex /tmp/hxaz5Fc6uc/query.variantkey.vcf.gz test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variantkey-hex /tmp/hxaz5Fc6uc/query.variantkey.bcf test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +allele-length /tmp/hxaz5Fc6uc/query.nucleotide.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +allele-length /tmp/hxaz5Fc6uc/query.nucleotide.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/query.func.1.vcf.gz -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/query.func.1.bcf -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/merge.a.vcf.gz -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/merge.a.bcf -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/view.vcf.gz -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/view.bcf -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/view.vcf.gz -- -t AC -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/view.bcf -- -t AC -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/view.vcf.gz -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/view.bcf -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/many-alts.vcf.gz -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/many-alts.bcf -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-hemi.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-hemi.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-hemi.vcf.gz -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-hemi.bcf -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-hwe.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-hwe.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-hwe.vcf.gz -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-hwe.bcf -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-rw.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-rw.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AN0.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AN0.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-VAF.vcf.gz -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-VAF.bcf -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AD.vcf.gz -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AD.bcf -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AD.vcf.gz -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AD.bcf -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AD.vcf.gz -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/hxaz5Fc6uc/fill-tags-AD.bcf -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.vcf.gz -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.bcf -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.vcf.gz -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.bcf -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.vcf.gz -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.bcf -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.vcf.gz -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.bcf -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.vcf.gz -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.bcf -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.vcf.gz -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.bcf -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.vcf.gz -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/hxaz5Fc6uc/view.bcf -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-switch-rate /tmp/hxaz5Fc6uc/trio.vcf.gz -- -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-switch-rate /tmp/hxaz5Fc6uc/trio.bcf -- -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/hxaz5Fc6uc/trio-stats.vcf.gz -a 1 -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/hxaz5Fc6uc/trio-stats.bcf -a 1 -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/hxaz5Fc6uc/trio-stats.vcf.gz -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/hxaz5Fc6uc/trio-stats.bcf -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +smpl-stats /tmp/hxaz5Fc6uc/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +smpl-stats /tmp/hxaz5Fc6uc/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/hxaz5Fc6uc/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/hxaz5Fc6uc/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/hxaz5Fc6uc/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/hxaz5Fc6uc/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/hxaz5Fc6uc/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/hxaz5Fc6uc/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/hxaz5Fc6uc/ad-bias.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/hxaz5Fc6uc/ad-bias.bcf -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/hxaz5Fc6uc/ad-bias.2.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/hxaz5Fc6uc/ad-bias.2.bcf -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/hxaz5Fc6uc/ad-bias.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/hxaz5Fc6uc/ad-bias.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/hxaz5Fc6uc/ad-bias.2.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/hxaz5Fc6uc/ad-bias.2.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +af-dist /tmp/hxaz5Fc6uc/af-dist.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +af-dist /tmp/hxaz5Fc6uc/af-dist.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -i /tmp/hxaz5Fc6uc/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -i /tmp/hxaz5Fc6uc/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.3.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.3.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/hxaz5Fc6uc/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/hxaz5Fc6uc/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/hxaz5Fc6uc/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/hxaz5Fc6uc/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/hxaz5Fc6uc/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/hxaz5Fc6uc/ref.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/hxaz5Fc6uc/ref.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/hxaz5Fc6uc/view.vcf.gz -- -s NA00001 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/hxaz5Fc6uc/view.bcf -- -s NA00001 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/hxaz5Fc6uc/view.vcf.gz -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/hxaz5Fc6uc/view.bcf -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/hxaz5Fc6uc/view.vcf.gz -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/hxaz5Fc6uc/view.bcf -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.vcf.gz -p child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.bcf -p child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.vcf.gz -p child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.bcf -p child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.vcf.gz -p child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.bcf -p child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.vcf.gz -p child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.bcf -p child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.vcf.gz -p child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.bcf -p child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.vcf.gz -p child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/hxaz5Fc6uc/mendelian.bcf -p child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/hxaz5Fc6uc/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/hxaz5Fc6uc/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/hxaz5Fc6uc/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/hxaz5Fc6uc/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/hxaz5Fc6uc/contrast.vcf.gz -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/hxaz5Fc6uc/contrast.bcf -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/hxaz5Fc6uc/contrast.1.vcf.gz -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/hxaz5Fc6uc/contrast.1.bcf -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/hxaz5Fc6uc/contrast.1.vcf.gz -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/hxaz5Fc6uc/contrast.1.bcf -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.1.vcf.gz -p proband,father,mother --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.1.bcf -p proband,father,mother --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.2.vcf.gz -p proband,father,mother --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.2.bcf -p proband,father,mother --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother           | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.4.bcf -p proband,father,mother           | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.4.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.5.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.5.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.6.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.6.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.7.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother        --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.7.bcf -p proband,father,mother        --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.8.vcf.gz -p proband,father,mother  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.8.bcf -p proband,father,mother  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.9.vcf.gz -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.9.bcf -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.9.vcf.gz -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.9.bcf -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.10.vcf.gz -p proband,father,mother --with-pAD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.10.bcf -p proband,father,mother --with-pAD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother --strictly-novel | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/hxaz5Fc6uc/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother --strictly-novel | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/hxaz5Fc6uc/gvcfz.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/hxaz5Fc6uc/gvcfz.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/hxaz5Fc6uc/gvcfz.vcf.gz -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/hxaz5Fc6uc/gvcfz.bcf -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/hxaz5Fc6uc/gvcfz.2.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/hxaz5Fc6uc/gvcfz.2.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.vcf.gz -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.bcf -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.vcf.gz -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.bcf -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.vcf.gz -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.bcf -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.vcf.gz -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.bcf -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.vcf.gz -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.bcf -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.vcf.gz -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.1.bcf -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.2.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.2.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/hxaz5Fc6uc/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.2.bcf -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.2.bcf -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.3.vcf.gz -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.3.bcf -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.3.vcf.gz -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.3.bcf -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.3.vcf.gz -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.3.bcf -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.5.vcf.gz -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.5.bcf -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.5.vcf.gz -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.5.bcf -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.6.vcf.gz -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.6.bcf -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.6.vcf.gz -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.6.bcf -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.6.vcf.gz -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.6.bcf -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.7.vcf.gz --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.7.bcf --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.8.vcf.gz -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.8.bcf -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.8.vcf.gz         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.8.bcf         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.8.vcf.gz -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.8.bcf -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.8.vcf.gz         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.8.bcf         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.9.vcf.gz -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.9.bcf -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.9.vcf.gz -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.9.bcf -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.10.vcf.gz -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.10.bcf -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.10.vcf.gz -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.10.bcf -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.10.vcf.gz        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.10.bcf        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.vcf.gz -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.bcf -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.vcf.gz -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.bcf -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.vcf.gz -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.bcf -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.vcf.gz -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.select-tr-expr.bcf -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.filter-missing-bt2098.vcf.gz -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.filter-missing-bt2098.bcf -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.filter-missing-bt2098.vcf.gz -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/hxaz5Fc6uc/split-vep.filter-missing-bt2098.bcf -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/hxaz5Fc6uc/parental-origin.vcf.gz -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/hxaz5Fc6uc/parental-origin.bcf -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/hxaz5Fc6uc/parental-origin.vcf.gz -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/hxaz5Fc6uc/parental-origin.bcf -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/hxaz5Fc6uc/parental-origin.vcf.gz -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/hxaz5Fc6uc/parental-origin.bcf -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/hxaz5Fc6uc/parental-origin.vcf.gz -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/hxaz5Fc6uc/parental-origin.bcf -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/hxaz5Fc6uc/parental-origin.vcf.gz -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/hxaz5Fc6uc/parental-origin.bcf -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/hxaz5Fc6uc/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/hxaz5Fc6uc/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/hxaz5Fc6uc/prune.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/hxaz5Fc6uc/prune.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/hxaz5Fc6uc/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/hxaz5Fc6uc/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/hxaz5Fc6uc/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/hxaz5Fc6uc/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/hxaz5Fc6uc/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/hxaz5Fc6uc/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/hxaz5Fc6uc/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/hxaz5Fc6uc/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N 1st /tmp/hxaz5Fc6uc/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N 1st /tmp/hxaz5Fc6uc/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/hxaz5Fc6uc/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/hxaz5Fc6uc/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/hxaz5Fc6uc/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/hxaz5Fc6uc/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/hxaz5Fc6uc/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/hxaz5Fc6uc/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/hxaz5Fc6uc/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/hxaz5Fc6uc/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance /tmp/hxaz5Fc6uc/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance /tmp/hxaz5Fc6uc/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d nearest /tmp/hxaz5Fc6uc/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d nearest /tmp/hxaz5Fc6uc/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d fwd /tmp/hxaz5Fc6uc/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d fwd /tmp/hxaz5Fc6uc/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d rev /tmp/hxaz5Fc6uc/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d rev /tmp/hxaz5Fc6uc/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d both /tmp/hxaz5Fc6uc/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d both /tmp/hxaz5Fc6uc/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_plugin_vrfs:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vrfs -a /tmp/hxaz5Fc6uc/mpileup.bam.list -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/vrfs.sites.txt | sort
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/hxaz5Fc6uc/split.1.1   && cd /tmp/hxaz5Fc6uc/split.1.1  && for f in A1.vcf A2.vcf A3.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/hxaz5Fc6uc/split.1.2 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.2.txt  && cd /tmp/hxaz5Fc6uc/split.1.2  && for f in A.vcf B.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/hxaz5Fc6uc/split.1.3 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.3.txt  && cd /tmp/hxaz5Fc6uc/split.1.3  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/hxaz5Fc6uc/split.1.4 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.3.txt -i 'GT[0]="alt"'  && cd /tmp/hxaz5Fc6uc/split.1.4  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/hxaz5Fc6uc/split.1.5 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.3.txt -i 'GT="alt"'  && cd /tmp/hxaz5Fc6uc/split.1.5  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/hxaz5Fc6uc/split.1.6 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.4.txt -i 'GT="alt"'  && cd /tmp/hxaz5Fc6uc/split.1.6  && for f in file1.vcf file2.vcf file3.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/hxaz5Fc6uc/split.1.7 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.grp.1.1.txt  && cd /tmp/hxaz5Fc6uc/split.1.7  && for f in A.vcf A1.vcf A2.vcf B.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.2.vcf -o /tmp/hxaz5Fc6uc/split.2.1   && cd /tmp/hxaz5Fc6uc/split.2.1  && for f in A1_A1-1.vcf A1_A1-2.vcf A1_A1.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +scatter /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/scatter.1.vcf -o /tmp/hxaz5Fc6uc/scatter.1.1 -n 3 && cd /tmp/hxaz5Fc6uc/scatter.1.1 && cat 0.vcf 1.vcf 2.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +scatter /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/scatter.1.vcf -o /tmp/hxaz5Fc6uc/scatter.1.2 -s 21,22 && cd /tmp/hxaz5Fc6uc/scatter.1.2 && cat 21.vcf 22.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +scatter /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/scatter.1.vcf -o /tmp/hxaz5Fc6uc/scatter.1.3 -s 21,22 -x X && cd /tmp/hxaz5Fc6uc/scatter.1.3 && cat 21.vcf 22.vcf X.vcf | grep -v ^##
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G  /tmp/hxaz5Fc6uc/concat.1.a.vcf.gz /tmp/hxaz5Fc6uc/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -G  /tmp/hxaz5Fc6uc/concat.1.a.vcf.gz /tmp/hxaz5Fc6uc/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version   /tmp/hxaz5Fc6uc/concat.1.a.vcf.gz /tmp/hxaz5Fc6uc/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob   /tmp/hxaz5Fc6uc/concat.1.a.vcf.gz /tmp/hxaz5Fc6uc/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version   /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version   /tmp/hxaz5Fc6uc/concat.1.a.bcf /tmp/hxaz5Fc6uc/concat.1.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob   /tmp/hxaz5Fc6uc/concat.1.a.bcf /tmp/hxaz5Fc6uc/concat.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -a  /tmp/hxaz5Fc6uc/concat.2.a.vcf.gz /tmp/hxaz5Fc6uc/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -a  /tmp/hxaz5Fc6uc/concat.2.a.vcf.gz /tmp/hxaz5Fc6uc/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -a  /tmp/hxaz5Fc6uc/concat.2.a.bcf /tmp/hxaz5Fc6uc/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -a  /tmp/hxaz5Fc6uc/concat.2.a.bcf /tmp/hxaz5Fc6uc/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -aD  /tmp/hxaz5Fc6uc/concat.2.a.vcf.gz /tmp/hxaz5Fc6uc/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -aD  /tmp/hxaz5Fc6uc/concat.2.a.vcf.gz /tmp/hxaz5Fc6uc/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -aD  /tmp/hxaz5Fc6uc/concat.2.a.bcf /tmp/hxaz5Fc6uc/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -aD  /tmp/hxaz5Fc6uc/concat.2.a.bcf /tmp/hxaz5Fc6uc/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/hxaz5Fc6uc/concat.3.a.vcf.gz /tmp/hxaz5Fc6uc/concat.3.b.vcf.gz /tmp/hxaz5Fc6uc/concat.3.0.vcf.gz /tmp/hxaz5Fc6uc/concat.3.c.vcf.gz /tmp/hxaz5Fc6uc/concat.3.d.vcf.gz /tmp/hxaz5Fc6uc/concat.3.e.vcf.gz /tmp/hxaz5Fc6uc/concat.3.f.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/hxaz5Fc6uc/concat.3.a.vcf.gz /tmp/hxaz5Fc6uc/concat.3.b.vcf.gz /tmp/hxaz5Fc6uc/concat.3.0.vcf.gz /tmp/hxaz5Fc6uc/concat.3.c.vcf.gz /tmp/hxaz5Fc6uc/concat.3.d.vcf.gz /tmp/hxaz5Fc6uc/concat.3.e.vcf.gz /tmp/hxaz5Fc6uc/concat.3.f.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/hxaz5Fc6uc/concat.3.a.bcf /tmp/hxaz5Fc6uc/concat.3.b.bcf /tmp/hxaz5Fc6uc/concat.3.0.bcf /tmp/hxaz5Fc6uc/concat.3.c.bcf /tmp/hxaz5Fc6uc/concat.3.d.bcf /tmp/hxaz5Fc6uc/concat.3.e.bcf /tmp/hxaz5Fc6uc/concat.3.f.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/hxaz5Fc6uc/concat.3.a.bcf /tmp/hxaz5Fc6uc/concat.3.b.bcf /tmp/hxaz5Fc6uc/concat.3.0.bcf /tmp/hxaz5Fc6uc/concat.3.c.bcf /tmp/hxaz5Fc6uc/concat.3.d.bcf /tmp/hxaz5Fc6uc/concat.3.e.bcf /tmp/hxaz5Fc6uc/concat.3.f.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
Random seed for test_naive_concat: 1532068403
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --naive-force /tmp/hxaz5Fc6uc/naive_concat.0.bcf /tmp/hxaz5Fc6uc/naive_concat.1.bcf /tmp/hxaz5Fc6uc/naive_concat.2.bcf /tmp/hxaz5Fc6uc/naive_concat.3.bcf /tmp/hxaz5Fc6uc/naive_concat.4.bcf /tmp/hxaz5Fc6uc/naive_concat.5.bcf /tmp/hxaz5Fc6uc/naive_concat.6.bcf /tmp/hxaz5Fc6uc/naive_concat.7.bcf /tmp/hxaz5Fc6uc/naive_concat.8.bcf /tmp/hxaz5Fc6uc/naive_concat.9.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --naive /tmp/hxaz5Fc6uc/naive_concat.0.vcf.gz /tmp/hxaz5Fc6uc/naive_concat.1.vcf.gz /tmp/hxaz5Fc6uc/naive_concat.2.vcf.gz /tmp/hxaz5Fc6uc/naive_concat.3.vcf.gz /tmp/hxaz5Fc6uc/naive_concat.4.vcf.gz /tmp/hxaz5Fc6uc/naive_concat.5.vcf.gz /tmp/hxaz5Fc6uc/naive_concat.6.vcf.gz /tmp/hxaz5Fc6uc/naive_concat.7.vcf.gz /tmp/hxaz5Fc6uc/naive_concat.8.vcf.gz /tmp/hxaz5Fc6uc/naive_concat.9.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l  /tmp/hxaz5Fc6uc/concat.4.a.vcf.gz /tmp/hxaz5Fc6uc/concat.4.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l  /tmp/hxaz5Fc6uc/concat.4.a.vcf.gz /tmp/hxaz5Fc6uc/concat.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l  /tmp/hxaz5Fc6uc/concat.4.a.bcf /tmp/hxaz5Fc6uc/concat.4.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l  /tmp/hxaz5Fc6uc/concat.4.a.bcf /tmp/hxaz5Fc6uc/concat.4.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/hxaz5Fc6uc/concat.5.a.vcf.gz /tmp/hxaz5Fc6uc/concat.5.b.vcf.gz /tmp/hxaz5Fc6uc/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/hxaz5Fc6uc/concat.5.a.vcf.gz /tmp/hxaz5Fc6uc/concat.5.b.vcf.gz /tmp/hxaz5Fc6uc/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/hxaz5Fc6uc/concat.5.a.bcf /tmp/hxaz5Fc6uc/concat.5.b.bcf /tmp/hxaz5Fc6uc/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/hxaz5Fc6uc/concat.5.a.bcf /tmp/hxaz5Fc6uc/concat.5.b.bcf /tmp/hxaz5Fc6uc/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-force  /tmp/hxaz5Fc6uc/concat.5.a.bcf /tmp/hxaz5Fc6uc/concat.5.b.bcf /tmp/hxaz5Fc6uc/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-force  /tmp/hxaz5Fc6uc/concat.5.a.bcf /tmp/hxaz5Fc6uc/concat.5.b.bcf /tmp/hxaz5Fc6uc/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G -a -D  /tmp/hxaz5Fc6uc/concat.5.a.vcf.gz /tmp/hxaz5Fc6uc/concat.5.b.vcf.gz /tmp/hxaz5Fc6uc/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -G -a -D  /tmp/hxaz5Fc6uc/concat.5.a.vcf.gz /tmp/hxaz5Fc6uc/concat.5.b.vcf.gz /tmp/hxaz5Fc6uc/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G -a -D  /tmp/hxaz5Fc6uc/concat.5.a.bcf /tmp/hxaz5Fc6uc/concat.5.b.bcf /tmp/hxaz5Fc6uc/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -G -a -D  /tmp/hxaz5Fc6uc/concat.5.a.bcf /tmp/hxaz5Fc6uc/concat.5.b.bcf /tmp/hxaz5Fc6uc/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/empty.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/empty.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr /tmp/hxaz5Fc6uc/empty.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/empty.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr /tmp/hxaz5Fc6uc/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/hxaz5Fc6uc/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/hxaz5Fc6uc/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/hxaz5Fc6uc/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/hxaz5Fc6uc/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/hxaz5Fc6uc/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.fai /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.fai /tmp/hxaz5Fc6uc/reheader.3.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.fai /tmp/hxaz5Fc6uc/reheader.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/hxaz5Fc6uc/rename.map -Ov /tmp/hxaz5Fc6uc/annotate.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/hxaz5Fc6uc/rename.map -Ob /tmp/hxaz5Fc6uc/annotate.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/hxaz5Fc6uc/rename.map -Ov /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/hxaz5Fc6uc/rename.map -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids --3N6 /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --tag PL /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --tag PL /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids /tmp/hxaz5Fc6uc/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --vcf-ids /tmp/hxaz5Fc6uc/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6 /tmp/hxaz5Fc6uc/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6 /tmp/hxaz5Fc6uc/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6 --vcf-ids /tmp/hxaz5Fc6uc/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6 --vcf-ids /tmp/hxaz5Fc6uc/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h -,.,. /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,. /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,. --vcf-ids /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,.,- /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,.,-
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -H /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -H /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --haplegendsample -,.,. /tmp/hxaz5Fc6uc/convert.hap-missing.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.hap-missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --haplegendsample -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,. /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,. --vcf-ids /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample .,- /tmp/hxaz5Fc6uc/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/hxaz5Fc6uc/convert.gvcf.vcf.gz
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/hxaz5Fc6uc/convert.gvcf.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/hxaz5Fc6uc/convert.gvcf.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa | grep -v ^##bcftools
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.23andme
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -Ou  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.23andme | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.tsv
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -Ou  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.tsv | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.gvcf-missing.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.gvcf-missing.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.beyond.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.beyond.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab -c /tmp/hxaz5Fc6uc/consensus.1.chain.new >/dev/null; cat /tmp/hxaz5Fc6uc/consensus.1.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab -c /tmp/hxaz5Fc6uc/consensus.2.chain.new >/dev/null; cat /tmp/hxaz5Fc6uc/consensus.2.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab -c /tmp/hxaz5Fc6uc/consensus.3.chain.new >/dev/null; cat /tmp/hxaz5Fc6uc/consensus.3.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1  -c /tmp/hxaz5Fc6uc/consensus.4.chain.new >/dev/null; cat /tmp/hxaz5Fc6uc/consensus.4.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/empty.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/empty.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus4.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus4.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus5.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus5.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus6.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus6.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.13.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.13.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.14.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.14.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.15.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.15.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.17.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.17.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.18.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.18.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.19.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.19.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.21.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.21.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/hxaz5Fc6uc/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2  
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/hxaz5Fc6uc/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/hxaz5Fc6uc/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/hxaz5Fc6uc/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/hxaz5Fc6uc/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/hxaz5Fc6uc/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/hxaz5Fc6uc/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/hxaz5Fc6uc/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/hxaz5Fc6uc/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.gff3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.chr.gff3 --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.gff --ncsq 64 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names -,-,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names -,-,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names -,chr,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names chr,chr,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names chr,-,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names chr,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names chr,-,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff --unify-chr-names Chromosome,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.yychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000593942/ENST00000593942.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000593942/ENST00000593942.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000593942/last-codon-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000528237/ENST00000528237.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000528237/ENST00000528237.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000528237/retained-stop-incomplete-cds.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000422159 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000422159.fa -g ENST00000422159.gff multiallelic.vcf  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000422159.fa -g short.gff multiallelic.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000390520/ENST00000390520.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000390520/ENST00000390520.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000390520/deletion-overlap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f EMN908947.fa -g ribosomal-slippage.gff ribosomal-slippage.vcf --force | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f EMN908947.fa -g simple.gff simple.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000379416 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.del-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-del.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-ins.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff single.vcf                 | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000301246/ENST00000301246.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000301246/ENST00000301246.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000301246/15bp-insert.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414-ENST00000521270/valgrind.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000571540/ENST00000571540.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000571540/ENST00000571540.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000571540/nmd.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000285021/ENST00000285021.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000285021/ENST00000285021.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000285021/stop-gained-inframe-indel.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000357367/ENST00000357367.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000357367/ENST00000357367.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000357367/stop-retained.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000230048/ENST00000230048.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000230048/ENST00000230048.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000230048/start-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 0 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2/ENST00000368801.2.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2/ENST00000368801.2.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414/ENST00000518414.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414/ENST00000518414.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414/incorrect-inframe-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000382647/ENST00000382647.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000382647/ENST00000382647.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000382647/synon-splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a -Ot | grep -v ^#
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000400151/ENST00000400151.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000400151/ENST00000400151.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000400151/long-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000580206 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff single.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff single.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000519442/ENST00000519442.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000519442/ENST00000519442.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000519442/synon-splice-region-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420190/ENST00000420190.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420190/ENST00000420190.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420190/abort-in-csq-push.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000557788/ENST00000557788.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000557788/ENST00000557788.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000557788/long-overlap-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0003/EDUMMY0003.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0003/EDUMMY0003.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0003/long-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000133836 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000133836.fa -g ENSMUST00000133836.gff filter-problem.vcf -i 'FILTER="PASS"' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000436063/ENST00000436063.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000436063/ENST00000436063.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000436063/insert-before-utr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000375992/ENST00000375992.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000375992/ENST00000375992.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000375992/incorrect-synon-del-not-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249.2/ENST00000318249.2.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249.2/ENST00000318249.2.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249.2/synonymous-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25500' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25496' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25105' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0002/EDUMMY0002.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0002/EDUMMY0002.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0002/boundaries.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000269081/ENST00000269081.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000269081/ENST00000269081.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000269081/stop-gained-not-inframe-insertion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000271583/ENST00000271583.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000271583/ENST00000271583.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000271583/splice-acceptor.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000256452/ENST00000256452.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000256452/ENST00000256452.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000256452/intron.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSCAFT00000047742/test.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573035-bt2212/complex-event.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000227471/ENST00000227471.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000227471/ENST00000227471.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000227471/insert-splice-vs-frameshift.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000624631/ENST00000624631.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000624631/ENST00000624631.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000624631/ambiguous.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -b -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 5 -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -lb -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009/ENST00000410009.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009/ENST00000410009.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009/frameshift.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000360372/ENST00000360372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000360372/ENST00000360372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000360372/mnp.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000409523/ENST00000409523.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000409523/ENST00000409523.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000409523/long-overlapping-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/start-lost-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000545279/ENST00000545279.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000545279/ENST00000545279.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000545279/splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/start-stop-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/segfault.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000381157/ENST00000381157.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000381157/ENST00000381157.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000381157/haploid-diploid.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520868/ENST00000520868.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520868/ENST00000520868.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520868/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801/ENST00000368801.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801/ENST00000368801.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801/compound-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000448695/ENST00000448695.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000448695/ENST00000448695.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000448695/syn-and-splice-reg.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSG00000173376/ENSG00000173376.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSG00000173376/ENSG00000173376.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSG00000173376/synon.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000413103/ENST00000413103.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000413103/ENST00000413103.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000413103/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000000000 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -p a -f ENST00000000000.fa -g ENST00000000000.gff upstream-stop.vcf  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%SAMPLE\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000263103-INS/ENST00000263103-INS.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000263103-INS/ENST00000263103-INS.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000263103-INS/insertions.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz -Or -G30 --AF-dflt 0.4| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.tab.gz| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.tab.gz --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref --include-noalt| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --include-noalt| grep -v ^#
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck --keep-refs /tmp/hxaz5Fc6uc/gtcheck.gvcf.a.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck --keep-refs /tmp/hxaz5Fc6uc/gtcheck.gvcf.b.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/hxaz5Fc6uc/gtcheck.gvcf.a.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/hxaz5Fc6uc/gtcheck.gvcf.b.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 --no-HWE-prob /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,GT /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,PL /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,GT /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,PL /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -p s1,s1 /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 /tmp/hxaz5Fc6uc/gtcheck.2.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0  /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -p B,A,C,A,C,B,D,A,D,B,D,C,E,A,E,B,E,C,E,D /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gtcheck.3.pairs /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 --n-matches 4 /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO  | sort
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:E,D,C /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:E,D,C -u PL /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:B -s gt:D /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:B -s gt:D -u PL /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:B -s gt:D,C /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -p B,C,B,D /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,GT -H /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,PL -H /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,GT -H /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,PL -H /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gtcheck.4.pairs --distinctive-sites 3 /tmp/hxaz5Fc6uc/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gtcheck.4.pairs --distinctive-sites 3,1 /tmp/hxaz5Fc6uc/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u GT -e 30 /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u GT -e 30 -p s1,s1 /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u GT -e 300 /tmp/hxaz5Fc6uc/gtcheck.1.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u PL -e 30 /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/hxaz5Fc6uc/gtcheck.ntop.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck --n-matches 2 /tmp/hxaz5Fc6uc/gtcheck.ntop.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/hxaz5Fc6uc/gtcheck.5.vcf.gz -g /tmp/hxaz5Fc6uc/gtcheck.5.gts.vcf.gz | grep -v ^# | grep -v Time
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -p A,B,B,C /tmp/hxaz5Fc6uc/gtcheck.6.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -t 11:33 -p A,D,A,E,D,E -u GT -e 10 /tmp/hxaz5Fc6uc/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/hxaz5Fc6uc/merge.4.b.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/hxaz5Fc6uc/merge.4.b.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/hxaz5Fc6uc/split-vep.2.vcf.gz  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/hxaz5Fc6uc/split-vep.2.bcf  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok


Number of tests:
    total   .. 2396
    passed  .. 2396
    failed  .. 0

+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bcftools-1.23-1.fc43.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.12NFQz
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ cd bcftools-1.23
+ DOCDIR=/builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/AUTHORS /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/NEWS /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.hJKmta
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ cd bcftools-1.23
+ LICENSEDIR=/builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/licenses/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/licenses/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/LICENSE /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/licenses/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bcftools = 1.23-1.fc43 bcftools(ppc-64) = 1.23-1.fc43
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl /usr/bin/python3 ld64.so.2()(64bit) ld64.so.2(GLIBC_2.23)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgsl.so.28()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libhts.so.3(HTSLIB_1.0)(64bit) libhts.so.3(HTSLIB_1.1)(64bit) libhts.so.3(HTSLIB_1.10)(64bit) libhts.so.3(HTSLIB_1.13)(64bit) libhts.so.3(HTSLIB_1.16)(64bit) libhts.so.3(HTSLIB_1.17)(64bit) libhts.so.3(HTSLIB_1.2.1)(64bit) libhts.so.3(HTSLIB_1.22)(64bit) libhts.so.3(HTSLIB_1.3)(64bit) libhts.so.3(HTSLIB_1.4)(64bit) libhts.so.3(HTSLIB_1.5)(64bit) libhts.so.3(HTSLIB_1.6)(64bit) libhts.so.3(HTSLIB_1.7)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.32)(64bit) libperl.so.5.42()(64bit) rtld(GNU_HASH)
Conflicts: samtools < 1.0
Processing files: bcftools-debugsource-1.23-1.fc43.ppc64le
Provides: bcftools-debugsource = 1.23-1.fc43 bcftools-debugsource(ppc-64) = 1.23-1.fc43
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bcftools-debuginfo-1.23-1.fc43.ppc64le
Provides: bcftools-debuginfo = 1.23-1.fc43 bcftools-debuginfo(ppc-64) = 1.23-1.fc43 debuginfo(build-id) = 005998bab8d8e6b577ec1805524bcee4fecd2453 debuginfo(build-id) = 078b2534df4290ba0369490743bfaf9a262843c4 debuginfo(build-id) = 09a3245f17465f5b04888875c8f9aa7d6df15e0e debuginfo(build-id) = 1631a0adde1e4a3a0b12666e79cf703ecc5e39c9 debuginfo(build-id) = 1690eeecab8dfc1e300cd2155988c985d5f83db0 debuginfo(build-id) = 1b6a237a0fadbb53c1ef783c40d176b6f40c3834 debuginfo(build-id) = 229630377be964d8895138d77b89fddc32f9c160 debuginfo(build-id) = 334cc0430f51d6056dec4cddccabf86ca6bd647c debuginfo(build-id) = 336b2eeb037fd665bb432c1281c48c8123b19d82 debuginfo(build-id) = 37037befcb2fd5fa99839db29222f105adf4d31c debuginfo(build-id) = 380ffe32d90c1619541ba8abe5fb8b90d4137510 debuginfo(build-id) = 3d525915a9ae6ec87896e7fc164b7cacf88172ac debuginfo(build-id) = 3f247513d5e44f4603e3a9ff6ff8438afb95f7ce debuginfo(build-id) = 41b43101051efb59fe68f2437d1cd7bcac7cd6a6 debuginfo(build-id) = 4932d989f9d5b8d70f6ca8dff41975d65aa4d002 debuginfo(build-id) = 5c552bab733f2cb8368a6dcdb3d203b137b8ae5d debuginfo(build-id) = 6740c779084f940e51166e31885a8eda0966de79 debuginfo(build-id) = 701599057d25d854d74e41fb69a409e6feb7b567 debuginfo(build-id) = 71c9ac4a863eee07b2b0e6b8d77a83f042fdcc7e debuginfo(build-id) = 7a2c2a40dfaa05ef73781ff5e801841ac76fb198 debuginfo(build-id) = 83cb288ad68929ca743ab950de69d2cab2f1b319 debuginfo(build-id) = 8525e9d1b775b6e167c0b2b65ae5eccc7ccaf606 debuginfo(build-id) = 864c924fef71eea627b5012ca27525979919c168 debuginfo(build-id) = 86593be567c6586871a4cff8c347259c3e4462ae debuginfo(build-id) = 86d2029a67cc0ca6cf27538b90e1ff5c3338b1c8 debuginfo(build-id) = a3797c38e875187d7dcf239fefeaaa82c4c64921 debuginfo(build-id) = a73747a6dd6d855f834f8ab00da50934d3a87706 debuginfo(build-id) = aa90367cf82530244d0cfbcd7f40c2ef47f33ae1 debuginfo(build-id) = b0793037efb0dd002db0cdeda4046a7bfc9c2b68 debuginfo(build-id) = b1814c89b9619c97a30672d78ecd8aa649cc55b6 debuginfo(build-id) = b33e13c9bc1632a1c4b81a12cb7d4dd45bf7bf6e debuginfo(build-id) = b3ab1bedf5b57093e227be6f0a37f8e8055876e8 debuginfo(build-id) = b63652cff12ea77fe0dc09e16d1e1567f234e1e3 debuginfo(build-id) = c2f843a8a292ae661a5931c2f75b14e33d4bb19a debuginfo(build-id) = c5e3833bc1bb9863ab51d30c7c8773468040d589 debuginfo(build-id) = cf3f96f540e10ad02c7ab915882060c821a33e83 debuginfo(build-id) = d0e9591e4c18210bfe7812afd488e9cb91c5bac8 debuginfo(build-id) = f073a9319aa7cfed6822fa934b63d47161dca33d debuginfo(build-id) = f3f9c6882ea806dd26bdef8ee62c1ab3f430c96e debuginfo(build-id) = fdafa98cc1dccdd001965e2b74d8f902efe96da3 debuginfo(build-id) = ffcfad308ba3e178f46c1767f61b84a560c44d46 debuginfo(build-id) = ffd5293320e075acbf9a8d3f410b0f4b1b37c59a
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bcftools-debugsource(ppc-64) = 1.23-1.fc43
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
Wrote: /builddir/build/RPMS/bcftools-1.23-1.fc43.ppc64le.rpm
Wrote: /builddir/build/RPMS/bcftools-debugsource-1.23-1.fc43.ppc64le.rpm
Wrote: /builddir/build/RPMS/bcftools-debuginfo-1.23-1.fc43.ppc64le.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.zWa33C
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ test -d /builddir/build/BUILD/bcftools-1.23-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bcftools-1.23-build
+ rm -rf /builddir/build/BUILD/bcftools-1.23-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bcftools-1.23-1.fc43.src.rpm
Finish: build phase for bcftools-1.23-1.fc43.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-43-ppc64le-1769509624.928484/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/bcftools-1.23-1.fc43.src.rpm) Config(child) 5 minutes 15 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc43",
            "arch": "ppc64le"
        },
        {
            "name": "bcftools-debuginfo",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc43",
            "arch": "ppc64le"
        },
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc43",
            "arch": "src"
        },
        {
            "name": "bcftools-debugsource",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc43",
            "arch": "ppc64le"
        }
    ]
}
RPMResults finished