Warning: Permanently added '2620:52:6:1161:dead:beef:cafe:c10e' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10066873-fedora-rawhide-ppc64le --chroot fedora-rawhide-ppc64le


Version: 1.6
PID: 16294
Logging PID: 16296
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'build_id': 10066873,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-ppc64le',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'e14e663825689d893c3d0d37656f4dd10cee491c',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ron/staging/bcftools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bcftools',
 'package_version': '1.23-1',
 'project_dirname': 'staging',
 'project_name': 'staging',
 'project_owner': 'ron',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ron/staging/fedora-rawhide-ppc64le/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'ron/staging--ron',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'ron',
 'tags': [],
 'task_id': '10066873-fedora-rawhide-ppc64le',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ron/staging/bcftools /var/lib/copr-rpmbuild/workspace/workdir-uuka9z9d/bcftools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ron/staging/bcftools', '/var/lib/copr-rpmbuild/workspace/workdir-uuka9z9d/bcftools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-uuka9z9d/bcftools'...

Running: git checkout e14e663825689d893c3d0d37656f4dd10cee491c --

cmd: ['git', 'checkout', 'e14e663825689d893c3d0d37656f4dd10cee491c', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-uuka9z9d/bcftools
rc: 0
stdout: 
stderr: Note: switching to 'e14e663825689d893c3d0d37656f4dd10cee491c'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at e14e663 automatic import of bcftools

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-uuka9z9d/bcftools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading bcftools-1.23.tar.bz2
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o bcftools-1.23.tar.bz2 --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ron/staging/bcftools/bcftools-1.23.tar.bz2/md5/a33e895594ff53ed68eded2e0b742540/bcftools-1.23.tar.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 7942k  100 7942k    0     0  11.0M      0 --:--:-- --:--:-- --:--:-- 11.0M
INFO: Reading stdout from command: md5sum bcftools-1.23.tar.bz2

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-uuka9z9d/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-uuka9z9d/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1769509248.800739 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.6 starting (python version = 3.14.2, NVR = mock-6.6-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-uuka9z9d/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-uuka9z9d/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1769509248.800739 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-uuka9z9d/bcftools/bcftools.spec)  Config(fedora-rawhide-ppc64le)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.6
INFO: Mock Version: 6.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1769509248.800739/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-40cdc771-3764-4216-beef-4ccaff2e28c1
INFO: Checking that 12a419313a16e514e81c051223cfcfed72dfa675cb3fd0c61041ecca539d81bf image matches host's architecture
INFO: Copy content of container 12a419313a16e514e81c051223cfcfed72dfa675cb3fd0c61041ecca539d81bf to /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1769509248.800739/root
INFO: mounting 12a419313a16e514e81c051223cfcfed72dfa675cb3fd0c61041ecca539d81bf with podman image mount
INFO: image 12a419313a16e514e81c051223cfcfed72dfa675cb3fd0c61041ecca539d81bf as /var/lib/containers/storage/overlay/d570452d4fd034d92f01f2c6d8eb8c19955975875d4ff7a3b07083d9e35671ce/merged
INFO: umounting image 12a419313a16e514e81c051223cfcfed72dfa675cb3fd0c61041ecca539d81bf (/var/lib/containers/storage/overlay/d570452d4fd034d92f01f2c6d8eb8c19955975875d4ff7a3b07083d9e35671ce/merged) with podman image umount
INFO: Removing image mock-bootstrap-40cdc771-3764-4216-beef-4ccaff2e28c1
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1769509248.800739/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-2.fc44.ppc64le
  rpm-sequoia-1.10.0-2.fc44.ppc64le
  dnf5-5.3.0.0-7.fc44.ppc64le
  dnf5-plugins-5.3.0.0-7.fc44.ppc64le
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 Copr repository                        100% |   6.5 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |  12.6 KiB/s |   3.4 KiB |  00m00s
Repositories loaded.
Package                            Arch    Version                      Repository      Size
Installing group/module packages:
 bash                              ppc64le 0:5.3.9-3.fc44               fedora       8.9 MiB
 bzip2                             ppc64le 0:1.0.8-23.fc44              fedora     170.8 KiB
 coreutils                         ppc64le 0:9.9-4.fc44                 fedora       9.3 MiB
 cpio                              ppc64le 0:2.15-6.fc43                fedora       1.2 MiB
 diffutils                         ppc64le 0:3.12-5.fc44                fedora       1.7 MiB
 fedora-release-common             noarch  0:44-0.10                    fedora      20.6 KiB
 findutils                         ppc64le 1:4.10.0-7.fc44              fedora       2.0 MiB
 gawk                              ppc64le 0:5.3.2-3.fc44               fedora       2.8 MiB
 glibc-minimal-langpack            ppc64le 0:2.43-1.fc44                fedora       0.0   B
 grep                              ppc64le 0:3.12-3.fc44                fedora       1.0 MiB
 gzip                              ppc64le 0:1.14-2.fc44                fedora     437.3 KiB
 info                              ppc64le 0:7.2-7.fc44                 fedora     485.4 KiB
 patch                             ppc64le 0:2.8-4.fc44                 fedora     262.3 KiB
 redhat-rpm-config                 noarch  0:343-19.fc44                fedora     183.6 KiB
 rpm-build                         ppc64le 0:6.0.1-2.fc44               fedora     662.4 KiB
 sed                               ppc64le 0:4.9-7.fc44                 fedora     937.0 KiB
 shadow-utils                      ppc64le 2:4.19.0-5.fc44              fedora       4.9 MiB
 tar                               ppc64le 2:1.35-8.fc44                fedora       3.1 MiB
 unzip                             ppc64le 0:6.0-69.fc44                fedora     533.4 KiB
 util-linux                        ppc64le 0:2.41.3-12.fc44             fedora       6.9 MiB
 which                             ppc64le 0:2.23-4.fc44                fedora     123.2 KiB
 xz                                ppc64le 1:5.8.2-2.fc44               fedora       1.4 MiB
Installing dependencies:
 R-srpm-macros                     noarch  0:1.3.4-3.fc44               fedora       3.4 KiB
 add-determinism                   ppc64le 0:0.7.2-3.fc44               fedora       2.4 MiB
 alternatives                      ppc64le 0:1.33-5.fc44                fedora      89.9 KiB
 ansible-srpm-macros               noarch  0:1-20.1.fc44                fedora      35.7 KiB
 audit-libs                        ppc64le 0:4.1.2-4.fc44               fedora     550.2 KiB
 binutils                          ppc64le 0:2.45.50-19.fc44            fedora      32.8 MiB
 build-reproducibility-srpm-macros noarch  0:0.7.2-3.fc44               fedora       1.2 KiB
 bzip2-libs                        ppc64le 0:1.0.8-23.fc44              fedora     136.4 KiB
 ca-certificates                   noarch  0:2025.2.80_v9.0.304-5.fc44  fedora       2.7 MiB
 cmake-srpm-macros                 noarch  0:3.31.10-5.fc44             fedora     524.0   B
 coreutils-common                  ppc64le 0:9.9-4.fc44                 fedora      11.2 MiB
 crypto-policies                   noarch  0:20251128-3.git19878fe.fc44 fedora     132.6 KiB
 curl                              ppc64le 0:8.18.0-3.fc44              fedora     528.0 KiB
 cyrus-sasl-lib                    ppc64le 0:2.1.28-35.fc44             fedora       2.9 MiB
 debugedit                         ppc64le 0:5.2-6.fc44                 fedora     382.0 KiB
 dwz                               ppc64le 0:0.16-3.fc44                fedora     386.5 KiB
 ed                                ppc64le 0:1.22.4-2.fc44              fedora     157.0 KiB
 efi-srpm-macros                   noarch  0:6-6.fc44                   fedora      40.2 KiB
 elfutils                          ppc64le 0:0.194-3.fc44               fedora       3.4 MiB
 elfutils-debuginfod-client        ppc64le 0:0.194-3.fc44               fedora     143.3 KiB
 elfutils-default-yama-scope       noarch  0:0.194-3.fc44               fedora       1.8 KiB
 elfutils-libelf                   ppc64le 0:0.194-3.fc44               fedora       1.2 MiB
 elfutils-libs                     ppc64le 0:0.194-3.fc44               fedora     874.3 KiB
 fedora-gpg-keys                   noarch  0:44-0.1                     fedora     131.2 KiB
 fedora-release                    noarch  0:44-0.10                    fedora       0.0   B
 fedora-release-identity-basic     noarch  0:44-0.10                    fedora     664.0   B
 fedora-repos                      noarch  0:44-0.1                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch  0:44-0.1                     fedora       2.2 KiB
 file                              ppc64le 0:5.46-9.fc44                fedora     140.0 KiB
 file-libs                         ppc64le 0:5.46-9.fc44                fedora      11.9 MiB
 filesystem                        ppc64le 0:3.18-52.fc44               fedora     112.0   B
 filesystem-srpm-macros            noarch  0:3.18-52.fc44               fedora      38.2 KiB
 fonts-srpm-macros                 noarch  1:5.0.0-2.fc44               fedora      55.8 KiB
 forge-srpm-macros                 noarch  0:0.4.0-4.fc44               fedora      38.9 KiB
 fpc-srpm-macros                   noarch  0:1.3-16.fc44                fedora     144.0   B
 gap-srpm-macros                   noarch  0:2-2.fc44                   fedora       2.1 KiB
 gdb-minimal                       ppc64le 0:17.1-2.fc44                fedora      16.5 MiB
 gdbm-libs                         ppc64le 1:1.23-11.fc44               fedora     233.3 KiB
 ghc-srpm-macros                   noarch  0:1.9.2-4.fc44               fedora     779.0   B
 glibc                             ppc64le 0:2.43-1.fc44                fedora      11.7 MiB
 glibc-common                      ppc64le 0:2.43-1.fc44                fedora       1.5 MiB
 glibc-gconv-extra                 ppc64le 0:2.43-1.fc44                fedora      18.5 MiB
 gmp                               ppc64le 1:6.3.0-5.fc44               fedora     786.1 KiB
 gnat-srpm-macros                  noarch  0:7-2.fc44                   fedora       1.0 KiB
 gnulib-l10n                       noarch  0:20241231-2.fc44            fedora     655.0 KiB
 gnupg2                            ppc64le 0:2.4.9-4.fc44               fedora       6.8 MiB
 gnupg2-dirmngr                    ppc64le 0:2.4.9-4.fc44               fedora     837.8 KiB
 gnupg2-gpg-agent                  ppc64le 0:2.4.9-4.fc44               fedora     974.1 KiB
 gnupg2-gpgconf                    ppc64le 0:2.4.9-4.fc44               fedora     321.5 KiB
 gnupg2-keyboxd                    ppc64le 0:2.4.9-4.fc44               fedora     233.1 KiB
 gnupg2-verify                     ppc64le 0:2.4.9-4.fc44               fedora     428.1 KiB
 gnutls                            ppc64le 0:3.8.11-10.fc44             fedora       4.0 MiB
 go-srpm-macros                    noarch  0:3.8.0-2.fc44               fedora      61.9 KiB
 gpgverify                         noarch  0:2.2-4.fc44                 fedora       8.7 KiB
 ima-evm-utils-libs                ppc64le 0:1.6.2-8.fc44               fedora      92.5 KiB
 jansson                           ppc64le 0:2.14-4.fc44                fedora     156.9 KiB
 java-srpm-macros                  noarch  0:1-8.fc44                   fedora     870.0   B
 json-c                            ppc64le 0:0.18-8.fc44                fedora     138.5 KiB
 kernel-srpm-macros                noarch  0:1.0-28.fc44                fedora       1.9 KiB
 keyutils-libs                     ppc64le 0:1.6.3-7.fc44               fedora      97.9 KiB
 krb5-libs                         ppc64le 0:1.21.3-12.fc44             fedora       2.9 MiB
 libacl                            ppc64le 0:2.3.2-6.fc44               fedora      67.5 KiB
 libarchive                        ppc64le 0:3.8.4-2.fc44               fedora       1.3 MiB
 libassuan                         ppc64le 0:2.5.7-5.fc44               fedora     215.8 KiB
 libattr                           ppc64le 0:2.5.2-8.fc44               fedora      68.0 KiB
 libblkid                          ppc64le 0:2.41.3-12.fc44             fedora     354.4 KiB
 libbrotli                         ppc64le 0:1.2.0-3.fc44               fedora       1.0 MiB
 libcap                            ppc64le 0:2.77-2.fc44                fedora     506.7 KiB
 libcap-ng                         ppc64le 0:0.9-5.fc44                 fedora     160.0 KiB
 libcom_err                        ppc64le 0:1.47.3-4.fc44              fedora     110.9 KiB
 libcurl                           ppc64le 0:8.18.0-3.fc44              fedora       1.2 MiB
 libeconf                          ppc64le 0:0.7.9-3.fc44               fedora      80.7 KiB
 libevent                          ppc64le 0:2.1.12-17.fc44             fedora       1.3 MiB
 libfdisk                          ppc64le 0:2.41.3-12.fc44             fedora     482.9 KiB
 libffi                            ppc64le 0:3.5.2-2.fc44               fedora     347.5 KiB
 libfsverity                       ppc64le 0:1.6-4.fc44                 fedora      68.0 KiB
 libgcc                            ppc64le 0:16.0.1-0.3.fc44.1          fedora     286.4 KiB
 libgcrypt                         ppc64le 0:1.11.2-1.fc44              fedora       1.5 MiB
 libgomp                           ppc64le 0:16.0.1-0.3.fc44.1          fedora     655.2 KiB
 libgpg-error                      ppc64le 0:1.58-2.fc44                fedora       1.0 MiB
 libidn2                           ppc64le 0:2.3.8-3.fc44               fedora     560.1 KiB
 libksba                           ppc64le 0:1.6.7-5.fc44               fedora     526.3 KiB
 liblastlog2                       ppc64le 0:2.41.3-12.fc44             fedora     137.2 KiB
 libmount                          ppc64le 0:2.41.3-12.fc44             fedora     548.2 KiB
 libnghttp2                        ppc64le 0:1.68.0-3.fc44              fedora     197.8 KiB
 libnghttp3                        ppc64le 0:1.15.0-1.fc44              fedora     206.5 KiB
 libpkgconf                        ppc64le 0:2.3.0-4.fc44               fedora     133.8 KiB
 libpsl                            ppc64le 0:0.21.5-7.fc44              fedora     132.0 KiB
 librtas                           ppc64le 0:2.0.6-6.fc44               fedora     305.3 KiB
 libselinux                        ppc64le 0:3.9-7.fc44                 fedora     265.0 KiB
 libselinux-utils                  ppc64le 0:3.9-7.fc44                 fedora       1.3 MiB
 libsemanage                       ppc64le 0:3.9-5.fc44                 fedora     423.8 KiB
 libsepol                          ppc64le 0:3.9-3.fc44                 fedora       1.0 MiB
 libsmartcols                      ppc64le 0:2.41.3-12.fc44             fedora     289.3 KiB
 libssh                            ppc64le 0:0.11.3-1.fc44              fedora     715.2 KiB
 libssh-config                     noarch  0:0.11.3-1.fc44              fedora     277.0   B
 libstdc++                         ppc64le 0:16.0.1-0.3.fc44.1          fedora       3.9 MiB
 libtasn1                          ppc64le 0:4.20.0-3.fc44              fedora     219.9 KiB
 libtool-ltdl                      ppc64le 0:2.5.4-10.fc44              fedora      93.8 KiB
 libunistring                      ppc64le 0:1.1-11.fc44                fedora       1.9 MiB
 libusb1                           ppc64le 0:1.0.29-5.fc44              fedora     242.7 KiB
 libuuid                           ppc64le 0:2.41.3-12.fc44             fedora      69.2 KiB
 libverto                          ppc64le 0:0.3.2-12.fc44              fedora      69.0 KiB
 libxcrypt                         ppc64le 0:4.5.2-3.fc44               fedora     336.9 KiB
 libxml2                           ppc64le 0:2.12.10-6.fc44             fedora       2.3 MiB
 libzstd                           ppc64le 0:1.5.7-5.fc44               fedora       1.1 MiB
 linkdupes                         ppc64le 0:0.7.2-3.fc44               fedora     906.9 KiB
 lua-libs                          ppc64le 0:5.4.8-5.fc44               fedora     393.7 KiB
 lua-srpm-macros                   noarch  0:1-17.fc44                  fedora       1.3 KiB
 lz4-libs                          ppc64le 0:1.10.0-4.fc44              fedora     261.0 KiB
 mpfr                              ppc64le 0:4.2.2-3.fc44               fedora     913.5 KiB
 ncurses-base                      noarch  0:6.5-9.20250614.fc44        fedora     328.1 KiB
 ncurses-libs                      ppc64le 0:6.5-9.20250614.fc44        fedora       1.5 MiB
 nettle                            ppc64le 0:3.10.1-3.fc44              fedora     957.4 KiB
 ngtcp2                            ppc64le 0:1.19.0-2.fc44              fedora     405.0 KiB
 ngtcp2-crypto-ossl                ppc64le 0:1.19.0-2.fc44              fedora      67.1 KiB
 npth                              ppc64le 0:1.8-4.fc44                 fedora      93.0 KiB
 ocaml-srpm-macros                 noarch  0:11-3.fc44                  fedora       1.9 KiB
 openblas-srpm-macros              noarch  0:2-21.fc44                  fedora     112.0   B
 openldap                          ppc64le 0:2.6.10-7.fc44              fedora     889.6 KiB
 openssl-libs                      ppc64le 1:3.5.4-2.fc44               fedora       9.1 MiB
 p11-kit                           ppc64le 0:0.25.8-2.fc44              fedora       2.9 MiB
 p11-kit-trust                     ppc64le 0:0.25.8-2.fc44              fedora     593.9 KiB
 package-notes-srpm-macros         noarch  0:0.5-15.fc44                fedora       1.6 KiB
 pam-libs                          ppc64le 0:1.7.2-1.fc44               fedora     286.0 KiB
 pcre2                             ppc64le 0:10.47-1.fc44.1             fedora     841.8 KiB
 pcre2-syntax                      noarch  0:10.47-1.fc44.1             fedora     281.9 KiB
 perl-srpm-macros                  noarch  0:1-61.fc44                  fedora     861.0   B
 pkgconf                           ppc64le 0:2.3.0-4.fc44               fedora     112.2 KiB
 pkgconf-m4                        noarch  0:2.3.0-4.fc44               fedora      14.4 KiB
 pkgconf-pkg-config                ppc64le 0:2.3.0-4.fc44               fedora     990.0   B
 policycoreutils                   ppc64le 0:3.9-8.fc44                 fedora       1.5 MiB
 popt                              ppc64le 0:1.19-10.fc44               fedora     208.6 KiB
 publicsuffix-list-dafsa           noarch  0:20260116-1.fc44            fedora      70.4 KiB
 pyproject-srpm-macros             noarch  0:1.18.6-2.fc44              fedora       1.9 KiB
 python-srpm-macros                noarch  0:3.14-10.fc44               fedora      51.6 KiB
 qt5-srpm-macros                   noarch  0:5.15.18-2.fc44             fedora     500.0   B
 qt6-srpm-macros                   noarch  0:6.10.1-2.fc44              fedora     464.0   B
 readline                          ppc64le 0:8.3-4.fc44                 fedora     627.4 KiB
 rpm                               ppc64le 0:6.0.1-2.fc44               fedora       4.2 MiB
 rpm-build-libs                    ppc64le 0:6.0.1-2.fc44               fedora     327.9 KiB
 rpm-libs                          ppc64le 0:6.0.1-2.fc44               fedora       1.2 MiB
 rpm-plugin-selinux                ppc64le 0:6.0.1-2.fc44               fedora      67.8 KiB
 rpm-sequoia                       ppc64le 0:1.10.0-2.fc44              fedora       4.9 MiB
 rpm-sign-libs                     ppc64le 0:6.0.1-2.fc44               fedora      67.5 KiB
 rust-srpm-macros                  noarch  0:28.4-3.fc44                fedora       5.5 KiB
 selinux-policy                    noarch  0:42.22-1.fc44               fedora      32.0 KiB
 selinux-policy-targeted           noarch  0:42.22-1.fc44               fedora      18.5 MiB
 setup                             noarch  0:2.15.0-28.fc44             fedora     724.9 KiB
 sqlite-libs                       ppc64le 0:3.51.2-1.fc44              fedora       1.9 MiB
 systemd-libs                      ppc64le 0:259-9.fc44                 fedora       3.0 MiB
 systemd-standalone-sysusers       ppc64le 0:259-9.fc44                 fedora     393.7 KiB
 tpm2-tss                          ppc64le 0:4.1.3-9.fc44               fedora       2.4 MiB
 tree-sitter-srpm-macros           noarch  0:0.4.2-2.fc44               fedora       8.3 KiB
 util-linux-core                   ppc64le 0:2.41.3-12.fc44             fedora       2.5 MiB
 xxhash-libs                       ppc64le 0:0.8.3-4.fc44               fedora      85.5 KiB
 xz-libs                           ppc64le 1:5.8.2-2.fc44               fedora     265.2 KiB
 zig-srpm-macros                   noarch  0:1-8.fc44                   fedora       1.3 KiB
 zip                               ppc64le 0:3.0-45.fc44                fedora     889.1 KiB
 zlib-ng-compat                    ppc64le 0:2.3.2-3.fc44               fedora     197.3 KiB
 zstd                              ppc64le 0:1.5.7-5.fc44               fedora     562.0 KiB
Installing groups:
 Buildsystem building group                                                                 

Transaction Summary:
 Installing:       183 packages

Total size of inbound packages is 73 MiB. Need to download 0 B.
After this operation, 279 MiB extra will be used (install 279 MiB, remove 0 B).
[  1/183] tar-2:1.35-8.fc44.ppc64le     100% |   0.0   B/s |   0.0   B |  00m00s
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--------------------------------------------------------------------------------
[183/183] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
Importing OpenPGP key 0x6D9F90A6:
 UserID     : "Fedora (44) <fedora-44-primary@fedoraproject.org>"
 Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary
The key was successfully imported.
Importing OpenPGP key 0x6D9F90A6:
 UserID     : "Fedora (44) <fedora-44-primary@fedoraproject.org>"
 Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary
The key was successfully imported.
Importing OpenPGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
Importing OpenPGP key 0xF577861E:
 UserID     : "Fedora (45) <fedora-45-primary@fedoraproject.org>"
 Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary
The key was successfully imported.
[  1/185] Verify package files          100% | 159.0   B/s | 183.0   B |  00m01s
[  2/185] Prepare transaction           100% | 901.0   B/s | 183.0   B |  00m00s
[  3/185] Installing libgcc-0:16.0.1-0. 100% |  70.3 MiB/s | 288.1 KiB |  00m00s
[  4/185] Installing libssh-config-0:0. 100% | 796.9 KiB/s | 816.0   B |  00m00s
[  5/185] Installing publicsuffix-list- 100% |  34.7 MiB/s |  71.1 KiB |  00m00s
[  6/185] Installing fedora-release-ide 100% | 898.4 KiB/s | 920.0   B |  00m00s
[  7/185] Installing fedora-repos-rawhi 100% |   1.2 MiB/s |   2.4 KiB |  00m00s
[  8/185] Installing fedora-gpg-keys-0: 100% |  10.9 MiB/s | 179.0 KiB |  00m00s
[  9/185] Installing fedora-repos-0:44- 100% |   5.6 MiB/s |   5.7 KiB |  00m00s
[ 10/185] Installing fedora-release-com 100% |   8.1 MiB/s |  24.9 KiB |  00m00s
[ 11/185] Installing fedora-release-0:4 100% |  13.5 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 and GID 4.
>>> Creating group 'bin' with GID 1.
>>> Creating user 'bin' (bin) with UID 1 and GID 1.
>>> Creating group 'daemon' with GID 2.
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.
>>> Creating user 'games' (games) with UID 12 and GID 100.
>>> Creating user 'halt' (halt) with UID 7 and GID 0.
>>> Creating user 'lp' (lp) with UID 4 and GID 7.
>>> Creating user 'mail' (mail) with UID 8 and GID 12.
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534.
>>> Creating user 'operator' (operator) with UID 11 and GID 0.
>>> Creating user 'root' (Super User) with UID 0 and GID 0.
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.
>>> Creating user 'sync' (sync) with UID 5 and GID 0.
>>> 
[ 12/185] Installing setup-0:2.15.0-28. 100% |  14.3 MiB/s | 730.6 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/185] Installing filesystem-0:3.18- 100% | 736.2 KiB/s | 212.8 KiB |  00m00s
[ 14/185] Installing pcre2-syntax-0:10. 100% |  69.4 MiB/s | 284.3 KiB |  00m00s
[ 15/185] Installing gnulib-l10n-0:2024 100% |  53.9 MiB/s | 661.9 KiB |  00m00s
[ 16/185] Installing coreutils-common-0 100% | 115.8 MiB/s |  11.2 MiB |  00m00s
[ 17/185] Installing ncurses-base-0:6.5 100% |  20.3 MiB/s | 353.5 KiB |  00m00s
[ 18/185] Installing bash-0:5.3.9-3.fc4 100% |  84.3 MiB/s |   8.9 MiB |  00m00s
[ 19/185] Installing glibc-common-0:2.4 100% |  27.5 MiB/s |   1.5 MiB |  00m00s
[ 20/185] Installing glibc-gconv-extra- 100% | 125.3 MiB/s |  18.5 MiB |  00m00s
[ 21/185] Installing glibc-0:2.43-1.fc4 100% |  81.6 MiB/s |  11.8 MiB |  00m00s
[ 22/185] Installing ncurses-libs-0:6.5 100% |  93.4 MiB/s |   1.5 MiB |  00m00s
[ 23/185] Installing glibc-minimal-lang 100% | 121.1 KiB/s | 124.0   B |  00m00s
[ 24/185] Installing zlib-ng-compat-0:2 100% |  64.5 MiB/s | 198.1 KiB |  00m00s
[ 25/185] Installing bzip2-libs-0:1.0.8 100% |  44.8 MiB/s | 137.5 KiB |  00m00s
[ 26/185] Installing libgpg-error-0:1.5 100% |  21.1 MiB/s |   1.0 MiB |  00m00s
[ 27/185] Installing libstdc++-0:16.0.1 100% | 126.3 MiB/s |   3.9 MiB |  00m00s
[ 28/185] Installing libassuan-0:2.5.7- 100% |  70.8 MiB/s | 217.6 KiB |  00m00s
[ 29/185] Installing libgcrypt-0:1.11.2 100% | 107.7 MiB/s |   1.5 MiB |  00m00s
[ 30/185] Installing readline-0:8.3-4.f 100% |  87.8 MiB/s | 629.5 KiB |  00m00s
[ 31/185] Installing gmp-1:6.3.0-5.fc44 100% |  96.2 MiB/s | 788.3 KiB |  00m00s
[ 32/185] Installing libuuid-0:2.41.3-1 100% |  34.3 MiB/s |  70.3 KiB |  00m00s
[ 33/185] Installing xz-libs-1:5.8.2-2. 100% |  65.0 MiB/s | 266.3 KiB |  00m00s
[ 34/185] Installing popt-0:1.19-10.fc4 100% |  26.3 MiB/s | 215.2 KiB |  00m00s
[ 35/185] Installing libzstd-0:1.5.7-5. 100% | 109.1 MiB/s |   1.1 MiB |  00m00s
[ 36/185] Installing elfutils-libelf-0: 100% | 109.7 MiB/s |   1.2 MiB |  00m00s
[ 37/185] Installing npth-0:1.8-4.fc44. 100% |  45.9 MiB/s |  94.1 KiB |  00m00s
[ 38/185] Installing libblkid-0:2.41.3- 100% |  69.4 MiB/s | 355.5 KiB |  00m00s
[ 39/185] Installing systemd-libs-0:259 100% | 123.4 MiB/s |   3.0 MiB |  00m00s
[ 40/185] Installing libxcrypt-0:4.5.2- 100% |  66.3 MiB/s | 339.6 KiB |  00m00s
[ 41/185] Installing libsepol-0:3.9-3.f 100% | 115.8 MiB/s |   1.0 MiB |  00m00s
[ 42/185] Installing sqlite-libs-0:3.51 100% | 107.9 MiB/s |   1.9 MiB |  00m00s
[ 43/185] Installing gnupg2-gpgconf-0:2 100% |   7.9 MiB/s | 323.6 KiB |  00m00s
[ 44/185] Installing libattr-0:2.5.2-8. 100% |  33.7 MiB/s |  69.0 KiB |  00m00s
[ 45/185] Installing libacl-0:2.3.2-6.f 100% |  33.4 MiB/s |  68.3 KiB |  00m00s
[ 46/185] Installing pcre2-0:10.47-1.fc 100% | 102.9 MiB/s | 843.2 KiB |  00m00s
[ 47/185] Installing libselinux-0:3.9-7 100% |  65.0 MiB/s | 266.3 KiB |  00m00s
[ 48/185] Installing grep-0:3.12-3.fc44 100% |  20.0 MiB/s |   1.0 MiB |  00m00s
[ 49/185] Installing sed-0:4.9-7.fc44.p 100% |  18.5 MiB/s | 945.2 KiB |  00m00s
[ 50/185] Installing findutils-1:4.10.0 100% |  35.3 MiB/s |   2.0 MiB |  00m00s
[ 51/185] Installing libtasn1-0:4.20.0- 100% |  54.1 MiB/s | 221.7 KiB |  00m00s
[ 52/185] Installing libunistring-0:1.1 100% | 117.0 MiB/s |   1.9 MiB |  00m00s
[ 53/185] Installing libidn2-0:2.3.8-3. 100% |  30.7 MiB/s | 566.3 KiB |  00m00s
[ 54/185] Installing crypto-policies-0: 100% |   9.1 MiB/s | 157.7 KiB |  00m00s
[ 55/185] Installing xz-1:5.8.2-2.fc44. 100% |  24.9 MiB/s |   1.4 MiB |  00m00s
[ 56/185] Installing libmount-0:2.41.3- 100% |  89.4 MiB/s | 549.3 KiB |  00m00s
[ 57/185] Installing gnupg2-verify-0:2. 100% |  10.2 MiB/s | 429.5 KiB |  00m00s
[ 58/185] Installing dwz-0:0.16-3.fc44. 100% |   9.5 MiB/s | 387.8 KiB |  00m00s
[ 59/185] Installing mpfr-0:4.2.2-3.fc4 100% |  89.4 MiB/s | 915.1 KiB |  00m00s
[ 60/185] Installing gawk-0:5.3.2-3.fc4 100% |  44.9 MiB/s |   2.8 MiB |  00m00s
[ 61/185] Installing libksba-0:1.6.7-5. 100% |  86.1 MiB/s | 528.8 KiB |  00m00s
[ 62/185] Installing unzip-0:6.0-69.fc4 100% |  12.5 MiB/s | 536.9 KiB |  00m00s
[ 63/185] Installing file-libs-0:5.46-9 100% | 182.8 MiB/s |  11.9 MiB |  00m00s
[ 64/185] Installing file-0:5.46-9.fc44 100% |   3.5 MiB/s | 141.5 KiB |  00m00s
[ 65/185] Installing diffutils-0:3.12-5 100% |  31.2 MiB/s |   1.7 MiB |  00m00s
[ 66/185] Installing libeconf-0:0.7.9-3 100% |  26.8 MiB/s |  82.4 KiB |  00m00s
[ 67/185] Installing libcap-ng-0:0.9-5. 100% |  52.7 MiB/s | 161.9 KiB |  00m00s
[ 68/185] Installing audit-libs-0:4.1.2 100% |  90.0 MiB/s | 552.7 KiB |  00m00s
[ 69/185] Installing pam-libs-0:1.7.2-1 100% |  70.4 MiB/s | 288.4 KiB |  00m00s
[ 70/185] Installing libcap-0:2.77-2.fc 100% |  11.6 MiB/s | 511.9 KiB |  00m00s
[ 71/185] Installing libsemanage-0:3.9- 100% |  69.3 MiB/s | 425.6 KiB |  00m00s
[ 72/185] Installing libsmartcols-0:2.4 100% |  70.9 MiB/s | 290.4 KiB |  00m00s
[ 73/185] Installing alternatives-0:1.3 100% |   2.4 MiB/s |  91.5 KiB |  00m00s
[ 74/185] Installing lua-libs-0:5.4.8-5 100% |  77.2 MiB/s | 395.1 KiB |  00m00s
[ 75/185] Installing json-c-0:0.18-8.fc 100% |  45.5 MiB/s | 139.7 KiB |  00m00s
[ 76/185] Installing libffi-0:3.5.2-2.f 100% |  85.2 MiB/s | 348.9 KiB |  00m00s
[ 77/185] Installing p11-kit-0:0.25.8-2 100% |  42.5 MiB/s |   2.9 MiB |  00m00s
[ 78/185] Installing p11-kit-trust-0:0. 100% |  11.9 MiB/s | 595.6 KiB |  00m00s
[ 79/185] Installing ngtcp2-0:1.19.0-2. 100% |  79.4 MiB/s | 406.6 KiB |  00m00s
[ 80/185] Installing openssl-libs-1:3.5 100% | 128.3 MiB/s |   9.1 MiB |  00m00s
[ 81/185] Installing coreutils-0:9.9-4. 100% |  79.8 MiB/s |   9.3 MiB |  00m00s
[ 82/185] Installing ca-certificates-0: 100% | 752.6 KiB/s |   2.5 MiB |  00m03s
[ 83/185] Installing gzip-0:1.14-2.fc44 100% |   8.2 MiB/s | 442.9 KiB |  00m00s
[ 84/185] Installing rpm-sequoia-0:1.10 100% | 127.7 MiB/s |   4.9 MiB |  00m00s
[ 85/185] Installing libfsverity-0:1.6- 100% |  33.7 MiB/s |  69.0 KiB |  00m00s
[ 86/185] Installing libevent-0:2.1.12- 100% | 106.0 MiB/s |   1.3 MiB |  00m00s
[ 87/185] Installing ngtcp2-crypto-ossl 100% |  22.1 MiB/s |  68.0 KiB |  00m00s
[ 88/185] Installing util-linux-core-0: 100% |  39.4 MiB/s |   2.5 MiB |  00m00s
[ 89/185] Installing zip-0:3.0-45.fc44. 100% |  19.4 MiB/s | 893.0 KiB |  00m00s
[ 90/185] Installing gnupg2-keyboxd-0:2 100% |  25.4 MiB/s | 234.4 KiB |  00m00s
[ 91/185] Installing libpsl-0:0.21.5-7. 100% |  43.3 MiB/s | 133.1 KiB |  00m00s
[ 92/185] Installing tar-2:1.35-8.fc44. 100% |  48.2 MiB/s |   3.1 MiB |  00m00s
[ 93/185] Installing linkdupes-0:0.7.2- 100% |  19.7 MiB/s | 908.3 KiB |  00m00s
[ 94/185] Installing libselinux-utils-0 100% |  27.1 MiB/s |   1.4 MiB |  00m00s
[ 95/185] Installing liblastlog2-0:2.41 100% |  17.0 MiB/s | 139.2 KiB |  00m00s
[ 96/185] Installing systemd-standalone 100% |   9.6 MiB/s | 394.3 KiB |  00m00s
[ 97/185] Installing rpm-libs-0:6.0.1-2 100% | 111.2 MiB/s |   1.2 MiB |  00m00s
[ 98/185] Installing libusb1-0:1.0.29-5 100% |  18.4 MiB/s | 244.3 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.ppc64le
>>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.ppc64le
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
[ 99/185] Installing tpm2-tss-0:4.1.3-9 100% | 109.3 MiB/s |   2.4 MiB |  00m00s
[100/185] Installing ima-evm-utils-libs 100% |  45.8 MiB/s |  93.8 KiB |  00m00s
[101/185] Installing gnupg2-gpg-agent-0 100% |  18.7 MiB/s | 977.9 KiB |  00m00s
[102/185] Installing libfdisk-0:2.41.3- 100% |  78.8 MiB/s | 484.0 KiB |  00m00s
[103/185] Installing zstd-0:1.5.7-5.fc4 100% |  12.8 MiB/s | 565.6 KiB |  00m00s
[104/185] Installing libxml2-0:2.12.10- 100% |  40.5 MiB/s |   2.3 MiB |  00m00s
[105/185] Installing nettle-0:3.10.1-3. 100% |  93.8 MiB/s | 960.5 KiB |  00m00s
[106/185] Installing gnutls-0:3.8.11-10 100% | 117.9 MiB/s |   4.0 MiB |  00m00s
[107/185] Installing bzip2-0:1.0.8-23.f 100% |   4.3 MiB/s | 175.4 KiB |  00m00s
[108/185] Installing add-determinism-0: 100% |  42.0 MiB/s |   2.4 MiB |  00m00s
[109/185] Installing cpio-0:2.15-6.fc43 100% |  23.2 MiB/s |   1.2 MiB |  00m00s
[110/185] Installing ed-0:1.22.4-2.fc44 100% |   4.0 MiB/s | 159.3 KiB |  00m00s
[111/185] Installing patch-0:2.8-4.fc44 100% |   6.4 MiB/s | 263.8 KiB |  00m00s
[112/185] Installing librtas-0:2.0.6-6. 100% |  18.8 MiB/s | 307.4 KiB |  00m00s
[113/185] Installing util-linux-0:2.41. 100% |  58.1 MiB/s |   7.0 MiB |  00m00s
[114/185] Installing policycoreutils-0: 100% |  20.4 MiB/s |   1.5 MiB |  00m00s
[115/185] Installing selinux-policy-0:4 100% |   1.1 MiB/s |  33.6 KiB |  00m00s
[116/185] Installing selinux-policy-tar 100% |  51.9 MiB/s |  14.8 MiB |  00m00s
[117/185] Installing build-reproducibil 100% |   1.5 MiB/s |   1.5 KiB |  00m00s
[118/185] Installing jansson-0:2.14-4.f 100% |  51.5 MiB/s | 158.3 KiB |  00m00s
[119/185] Installing lz4-libs-0:1.10.0- 100% |  64.0 MiB/s | 262.1 KiB |  00m00s
[120/185] Installing libarchive-0:3.8.4 100% |  97.4 MiB/s |   1.3 MiB |  00m00s
[121/185] Installing libgomp-0:16.0.1-0 100% |  91.6 MiB/s | 656.6 KiB |  00m00s
[122/185] Installing libpkgconf-0:2.3.0 100% |  43.9 MiB/s | 134.9 KiB |  00m00s
[123/185] Installing pkgconf-0:2.3.0-4. 100% |   2.7 MiB/s | 114.7 KiB |  00m00s
[124/185] Installing libtool-ltdl-0:2.5 100% |  46.3 MiB/s |  94.9 KiB |  00m00s
[125/185] Installing gdbm-libs-1:1.23-1 100% |  57.4 MiB/s | 235.0 KiB |  00m00s
[126/185] Installing cyrus-sasl-lib-0:2 100% |  47.0 MiB/s |   2.9 MiB |  00m00s
[127/185] Installing openldap-0:2.6.10- 100% |  79.3 MiB/s | 893.4 KiB |  00m00s
[128/185] Installing gnupg2-dirmngr-0:2 100% |  16.8 MiB/s | 840.5 KiB |  00m00s
[129/185] Installing gnupg2-0:2.4.9-4.f 100% |  71.9 MiB/s |   6.8 MiB |  00m00s
[130/185] Installing rpm-sign-libs-0:6. 100% |  33.4 MiB/s |  68.4 KiB |  00m00s
[131/185] Installing gpgverify-0:2.2-4. 100% |   9.2 MiB/s |   9.4 KiB |  00m00s
[132/185] Installing xxhash-libs-0:0.8. 100% |  28.3 MiB/s |  86.9 KiB |  00m00s
[133/185] Installing libbrotli-0:1.2.0- 100% |  92.2 MiB/s |   1.0 MiB |  00m00s
[134/185] Installing libnghttp2-0:1.68. 100% |  64.8 MiB/s | 198.9 KiB |  00m00s
[135/185] Installing libnghttp3-0:1.15. 100% |  67.7 MiB/s | 207.9 KiB |  00m00s
[136/185] Installing keyutils-libs-0:1. 100% |  32.3 MiB/s |  99.3 KiB |  00m00s
[137/185] Installing libcom_err-0:1.47. 100% |  54.7 MiB/s | 112.0 KiB |  00m00s
[138/185] Installing libverto-0:0.3.2-1 100% |  23.0 MiB/s |  70.8 KiB |  00m00s
[139/185] Installing krb5-libs-0:1.21.3 100% | 100.2 MiB/s |   2.9 MiB |  00m00s
[140/185] Installing libssh-0:0.11.3-1. 100% |  87.6 MiB/s | 717.3 KiB |  00m00s
[141/185] Installing libcurl-0:8.18.0-3 100% | 100.8 MiB/s |   1.2 MiB |  00m00s
[142/185] Installing curl-0:8.18.0-3.fc 100% |   9.8 MiB/s | 530.7 KiB |  00m00s
[143/185] Installing rpm-0:6.0.1-2.fc44 100% |  30.4 MiB/s |   2.8 MiB |  00m00s
[144/185] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0   B |  00m00s
[145/185] Installing efi-srpm-macros-0: 100% |  20.1 MiB/s |  41.2 KiB |  00m00s
[146/185] Installing java-srpm-macros-0 100% |   1.1 MiB/s |   1.1 KiB |  00m00s
[147/185] Installing lua-srpm-macros-0: 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[148/185] Installing tree-sitter-srpm-m 100% |   4.5 MiB/s |   9.3 KiB |  00m00s
[149/185] Installing zig-srpm-macros-0: 100% |   1.8 MiB/s |   1.9 KiB |  00m00s
[150/185] Installing filesystem-srpm-ma 100% |  19.0 MiB/s |  38.9 KiB |  00m00s
[151/185] Installing elfutils-default-y 100% | 408.6 KiB/s |   2.0 KiB |  00m00s
[152/185] Installing elfutils-libs-0:0. 100% |  85.6 MiB/s | 876.1 KiB |  00m00s
[153/185] Installing elfutils-debuginfo 100% |   3.5 MiB/s | 145.4 KiB |  00m00s
[154/185] Installing binutils-0:2.45.50 100% | 116.5 MiB/s |  32.8 MiB |  00m00s
[155/185] Installing elfutils-0:0.194-3 100% |  53.9 MiB/s |   3.5 MiB |  00m00s
[156/185] Installing gdb-minimal-0:17.1 100% | 104.3 MiB/s |  16.5 MiB |  00m00s
[157/185] Installing debugedit-0:5.2-6. 100% |   9.0 MiB/s | 385.3 KiB |  00m00s
[158/185] Installing rpm-build-libs-0:6 100% |  64.2 MiB/s | 328.7 KiB |  00m00s
[159/185] Installing pkgconf-m4-0:2.3.0 100% |   7.2 MiB/s |  14.8 KiB |  00m00s
[160/185] Installing pkgconf-pkg-config 100% |  46.7 KiB/s |   1.8 KiB |  00m00s
[161/185] Installing rust-srpm-macros-0 100% |   3.1 MiB/s |   6.4 KiB |  00m00s
[162/185] Installing qt6-srpm-macros-0: 100% | 722.7 KiB/s | 740.0   B |  00m00s
[163/185] Installing qt5-srpm-macros-0: 100% | 757.8 KiB/s | 776.0   B |  00m00s
[164/185] Installing perl-srpm-macros-0 100% |   1.1 MiB/s |   1.1 KiB |  00m00s
[165/185] Installing package-notes-srpm 100% |   2.0 MiB/s |   2.0 KiB |  00m00s
[166/185] Installing openblas-srpm-macr 100% | 382.8 KiB/s | 392.0   B |  00m00s
[167/185] Installing ocaml-srpm-macros- 100% |   2.1 MiB/s |   2.1 KiB |  00m00s
[168/185] Installing kernel-srpm-macros 100% |   2.3 MiB/s |   2.3 KiB |  00m00s
[169/185] Installing gnat-srpm-macros-0 100% |   1.2 MiB/s |   1.3 KiB |  00m00s
[170/185] Installing ghc-srpm-macros-0: 100% |   1.0 MiB/s |   1.0 KiB |  00m00s
[171/185] Installing gap-srpm-macros-0: 100% |   2.6 MiB/s |   2.7 KiB |  00m00s
[172/185] Installing fpc-srpm-macros-0: 100% | 410.2 KiB/s | 420.0   B |  00m00s
[173/185] Installing ansible-srpm-macro 100% |  17.7 MiB/s |  36.2 KiB |  00m00s
[174/185] Installing rpm-build-0:6.0.1- 100% |  14.0 MiB/s | 671.6 KiB |  00m00s
[175/185] Installing pyproject-srpm-mac 100% |   1.2 MiB/s |   2.5 KiB |  00m00s
[176/185] Installing redhat-rpm-config- 100% |  26.5 MiB/s | 189.9 KiB |  00m00s
[177/185] Installing forge-srpm-macros- 100% |  19.7 MiB/s |  40.3 KiB |  00m00s
[178/185] Installing fonts-srpm-macros- 100% |  27.8 MiB/s |  57.0 KiB |  00m00s
[179/185] Installing go-srpm-macros-0:3 100% |  30.8 MiB/s |  63.0 KiB |  00m00s
[180/185] Installing R-srpm-macros-0:1. 100% |   2.1 MiB/s |   4.2 KiB |  00m00s
[181/185] Installing python-srpm-macros 100% |   4.7 MiB/s |  52.9 KiB |  00m00s
[182/185] Installing rpm-plugin-selinux 100% |  33.6 MiB/s |  68.8 KiB |  00m00s
[183/185] Installing which-0:2.23-4.fc4 100% |   2.7 MiB/s | 125.4 KiB |  00m00s
[184/185] Installing shadow-utils-2:4.1 100% |  46.0 MiB/s |   4.9 MiB |  00m00s
[185/185] Installing info-0:7.2-7.fc44. 100% |  34.4 KiB/s | 485.8 KiB |  00m14s
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.4-3.fc44.noarch
add-determinism-0.7.2-3.fc44.ppc64le
alternatives-1.33-5.fc44.ppc64le
ansible-srpm-macros-1-20.1.fc44.noarch
audit-libs-4.1.2-4.fc44.ppc64le
bash-5.3.9-3.fc44.ppc64le
binutils-2.45.50-19.fc44.ppc64le
build-reproducibility-srpm-macros-0.7.2-3.fc44.noarch
bzip2-1.0.8-23.fc44.ppc64le
bzip2-libs-1.0.8-23.fc44.ppc64le
ca-certificates-2025.2.80_v9.0.304-5.fc44.noarch
cmake-srpm-macros-3.31.10-5.fc44.noarch
coreutils-9.9-4.fc44.ppc64le
coreutils-common-9.9-4.fc44.ppc64le
cpio-2.15-6.fc43.ppc64le
crypto-policies-20251128-3.git19878fe.fc44.noarch
curl-8.18.0-3.fc44.ppc64le
cyrus-sasl-lib-2.1.28-35.fc44.ppc64le
debugedit-5.2-6.fc44.ppc64le
diffutils-3.12-5.fc44.ppc64le
dwz-0.16-3.fc44.ppc64le
ed-1.22.4-2.fc44.ppc64le
efi-srpm-macros-6-6.fc44.noarch
elfutils-0.194-3.fc44.ppc64le
elfutils-debuginfod-client-0.194-3.fc44.ppc64le
elfutils-default-yama-scope-0.194-3.fc44.noarch
elfutils-libelf-0.194-3.fc44.ppc64le
elfutils-libs-0.194-3.fc44.ppc64le
fedora-gpg-keys-44-0.1.noarch
fedora-release-44-0.10.noarch
fedora-release-common-44-0.10.noarch
fedora-release-identity-basic-44-0.10.noarch
fedora-repos-44-0.1.noarch
fedora-repos-rawhide-44-0.1.noarch
file-5.46-9.fc44.ppc64le
file-libs-5.46-9.fc44.ppc64le
filesystem-3.18-52.fc44.ppc64le
filesystem-srpm-macros-3.18-52.fc44.noarch
findutils-4.10.0-7.fc44.ppc64le
fonts-srpm-macros-5.0.0-2.fc44.noarch
forge-srpm-macros-0.4.0-4.fc44.noarch
fpc-srpm-macros-1.3-16.fc44.noarch
gap-srpm-macros-2-2.fc44.noarch
gawk-5.3.2-3.fc44.ppc64le
gdb-minimal-17.1-2.fc44.ppc64le
gdbm-libs-1.23-11.fc44.ppc64le
ghc-srpm-macros-1.9.2-4.fc44.noarch
glibc-2.43-1.fc44.ppc64le
glibc-common-2.43-1.fc44.ppc64le
glibc-gconv-extra-2.43-1.fc44.ppc64le
glibc-minimal-langpack-2.43-1.fc44.ppc64le
gmp-6.3.0-5.fc44.ppc64le
gnat-srpm-macros-7-2.fc44.noarch
gnulib-l10n-20241231-2.fc44.noarch
gnupg2-2.4.9-4.fc44.ppc64le
gnupg2-dirmngr-2.4.9-4.fc44.ppc64le
gnupg2-gpg-agent-2.4.9-4.fc44.ppc64le
gnupg2-gpgconf-2.4.9-4.fc44.ppc64le
gnupg2-keyboxd-2.4.9-4.fc44.ppc64le
gnupg2-verify-2.4.9-4.fc44.ppc64le
gnutls-3.8.11-10.fc44.ppc64le
go-srpm-macros-3.8.0-2.fc44.noarch
gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b
gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98
gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf
gpgverify-2.2-4.fc44.noarch
grep-3.12-3.fc44.ppc64le
gzip-1.14-2.fc44.ppc64le
ima-evm-utils-libs-1.6.2-8.fc44.ppc64le
info-7.2-7.fc44.ppc64le
jansson-2.14-4.fc44.ppc64le
java-srpm-macros-1-8.fc44.noarch
json-c-0.18-8.fc44.ppc64le
kernel-srpm-macros-1.0-28.fc44.noarch
keyutils-libs-1.6.3-7.fc44.ppc64le
krb5-libs-1.21.3-12.fc44.ppc64le
libacl-2.3.2-6.fc44.ppc64le
libarchive-3.8.4-2.fc44.ppc64le
libassuan-2.5.7-5.fc44.ppc64le
libattr-2.5.2-8.fc44.ppc64le
libblkid-2.41.3-12.fc44.ppc64le
libbrotli-1.2.0-3.fc44.ppc64le
libcap-2.77-2.fc44.ppc64le
libcap-ng-0.9-5.fc44.ppc64le
libcom_err-1.47.3-4.fc44.ppc64le
libcurl-8.18.0-3.fc44.ppc64le
libeconf-0.7.9-3.fc44.ppc64le
libevent-2.1.12-17.fc44.ppc64le
libfdisk-2.41.3-12.fc44.ppc64le
libffi-3.5.2-2.fc44.ppc64le
libfsverity-1.6-4.fc44.ppc64le
libgcc-16.0.1-0.3.fc44.1.ppc64le
libgcrypt-1.11.2-1.fc44.ppc64le
libgomp-16.0.1-0.3.fc44.1.ppc64le
libgpg-error-1.58-2.fc44.ppc64le
libidn2-2.3.8-3.fc44.ppc64le
libksba-1.6.7-5.fc44.ppc64le
liblastlog2-2.41.3-12.fc44.ppc64le
libmount-2.41.3-12.fc44.ppc64le
libnghttp2-1.68.0-3.fc44.ppc64le
libnghttp3-1.15.0-1.fc44.ppc64le
libpkgconf-2.3.0-4.fc44.ppc64le
libpsl-0.21.5-7.fc44.ppc64le
librtas-2.0.6-6.fc44.ppc64le
libselinux-3.9-7.fc44.ppc64le
libselinux-utils-3.9-7.fc44.ppc64le
libsemanage-3.9-5.fc44.ppc64le
libsepol-3.9-3.fc44.ppc64le
libsmartcols-2.41.3-12.fc44.ppc64le
libssh-0.11.3-1.fc44.ppc64le
libssh-config-0.11.3-1.fc44.noarch
libstdc++-16.0.1-0.3.fc44.1.ppc64le
libtasn1-4.20.0-3.fc44.ppc64le
libtool-ltdl-2.5.4-10.fc44.ppc64le
libunistring-1.1-11.fc44.ppc64le
libusb1-1.0.29-5.fc44.ppc64le
libuuid-2.41.3-12.fc44.ppc64le
libverto-0.3.2-12.fc44.ppc64le
libxcrypt-4.5.2-3.fc44.ppc64le
libxml2-2.12.10-6.fc44.ppc64le
libzstd-1.5.7-5.fc44.ppc64le
linkdupes-0.7.2-3.fc44.ppc64le
lua-libs-5.4.8-5.fc44.ppc64le
lua-srpm-macros-1-17.fc44.noarch
lz4-libs-1.10.0-4.fc44.ppc64le
mpfr-4.2.2-3.fc44.ppc64le
ncurses-base-6.5-9.20250614.fc44.noarch
ncurses-libs-6.5-9.20250614.fc44.ppc64le
nettle-3.10.1-3.fc44.ppc64le
ngtcp2-1.19.0-2.fc44.ppc64le
ngtcp2-crypto-ossl-1.19.0-2.fc44.ppc64le
npth-1.8-4.fc44.ppc64le
ocaml-srpm-macros-11-3.fc44.noarch
openblas-srpm-macros-2-21.fc44.noarch
openldap-2.6.10-7.fc44.ppc64le
openssl-libs-3.5.4-2.fc44.ppc64le
p11-kit-0.25.8-2.fc44.ppc64le
p11-kit-trust-0.25.8-2.fc44.ppc64le
package-notes-srpm-macros-0.5-15.fc44.noarch
pam-libs-1.7.2-1.fc44.ppc64le
patch-2.8-4.fc44.ppc64le
pcre2-10.47-1.fc44.1.ppc64le
pcre2-syntax-10.47-1.fc44.1.noarch
perl-srpm-macros-1-61.fc44.noarch
pkgconf-2.3.0-4.fc44.ppc64le
pkgconf-m4-2.3.0-4.fc44.noarch
pkgconf-pkg-config-2.3.0-4.fc44.ppc64le
policycoreutils-3.9-8.fc44.ppc64le
popt-1.19-10.fc44.ppc64le
publicsuffix-list-dafsa-20260116-1.fc44.noarch
pyproject-srpm-macros-1.18.6-2.fc44.noarch
python-srpm-macros-3.14-10.fc44.noarch
qt5-srpm-macros-5.15.18-2.fc44.noarch
qt6-srpm-macros-6.10.1-2.fc44.noarch
readline-8.3-4.fc44.ppc64le
redhat-rpm-config-343-19.fc44.noarch
rpm-6.0.1-2.fc44.ppc64le
rpm-build-6.0.1-2.fc44.ppc64le
rpm-build-libs-6.0.1-2.fc44.ppc64le
rpm-libs-6.0.1-2.fc44.ppc64le
rpm-plugin-selinux-6.0.1-2.fc44.ppc64le
rpm-sequoia-1.10.0-2.fc44.ppc64le
rpm-sign-libs-6.0.1-2.fc44.ppc64le
rust-srpm-macros-28.4-3.fc44.noarch
sed-4.9-7.fc44.ppc64le
selinux-policy-42.22-1.fc44.noarch
selinux-policy-targeted-42.22-1.fc44.noarch
setup-2.15.0-28.fc44.noarch
shadow-utils-4.19.0-5.fc44.ppc64le
sqlite-libs-3.51.2-1.fc44.ppc64le
systemd-libs-259-9.fc44.ppc64le
systemd-standalone-sysusers-259-9.fc44.ppc64le
tar-1.35-8.fc44.ppc64le
tpm2-tss-4.1.3-9.fc44.ppc64le
tree-sitter-srpm-macros-0.4.2-2.fc44.noarch
unzip-6.0-69.fc44.ppc64le
util-linux-2.41.3-12.fc44.ppc64le
util-linux-core-2.41.3-12.fc44.ppc64le
which-2.23-4.fc44.ppc64le
xxhash-libs-0.8.3-4.fc44.ppc64le
xz-5.8.2-2.fc44.ppc64le
xz-libs-5.8.2-2.fc44.ppc64le
zig-srpm-macros-1-8.fc44.noarch
zip-3.0-45.fc44.ppc64le
zlib-ng-compat-2.3.2-3.fc44.ppc64le
zstd-1.5.7-5.fc44.ppc64le
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769385600
Wrote: /builddir/build/SRPMS/bcftools-1.23-1.fc44.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1769509248.800739/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-uuka9z9d/bcftools/bcftools.spec) Config(child) 0 minutes 41 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/bcftools-1.23-1.fc44.src.rpm)  Config(fedora-rawhide-ppc64le)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1769509248.800739/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1769509248.800739/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1769509248.800739/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-2.fc44.ppc64le
  rpm-sequoia-1.10.0-2.fc44.ppc64le
  dnf5-5.3.0.0-7.fc44.ppc64le
  dnf5-plugins-5.3.0.0-7.fc44.ppc64le
Finish: chroot init
Start: build phase for bcftools-1.23-1.fc44.src.rpm
Start: build setup for bcftools-1.23-1.fc44.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769385600
Wrote: /builddir/build/SRPMS/bcftools-1.23-1.fc44.src.rpm
Updating and loading repositories:
 Copr repository                        100% |   4.2 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |   8.6 KiB/s |   3.4 KiB |  00m00s
Repositories loaded.
Package                   Arch    Version                Repository      Size
Installing:
 autoconf                 noarch  0:2.72-10.fc44         fedora       2.8 MiB
 automake                 noarch  0:1.18.1-4.fc44        fedora       1.8 MiB
 gcc                      ppc64le 0:16.0.1-0.3.fc44.1    fedora     106.8 MiB
 gsl-devel                ppc64le 0:2.8-3.fc44           fedora       1.6 MiB
 htslib-devel             ppc64le 0:1.23-1.fc44          copr_base  449.9 KiB
 htslib-tools             ppc64le 0:1.23-1.fc44          copr_base    4.6 MiB
 make                     ppc64le 1:4.4.1-12.fc44        fedora       1.9 MiB
 perl-ExtUtils-Embed      noarch  0:1.35-521.fc44        fedora      15.6 KiB
 perl-File-Temp           noarch  1:0.231.200-2.fc44     fedora     163.7 KiB
 perl-FindBin             noarch  0:1.54-521.fc44        fedora       6.8 KiB
 perl-Getopt-Long         noarch  1:2.58-521.fc44        fedora     144.5 KiB
 perl-interpreter         ppc64le 4:5.42.0-521.fc44      fedora     174.4 KiB
 zlib-ng-compat-devel     ppc64le 0:2.3.2-3.fc44         fedora     107.0 KiB
Installing dependencies:
 annobin-docs             noarch  0:13.05-3.fc44         fedora      99.2 KiB
 annobin-plugin-gcc       ppc64le 0:13.05-3.fc44         fedora     707.7 KiB
 cmake-filesystem         ppc64le 0:3.31.10-5.fc44       fedora       0.0   B
 cpp                      ppc64le 0:16.0.1-0.3.fc44.1    fedora      39.1 MiB
 emacs-filesystem         ppc64le 1:30.2-2.fc44          fedora       0.0   B
 expat                    ppc64le 0:2.7.3-2.fc44         fedora     424.5 KiB
 gcc-plugin-annobin       ppc64le 0:16.0.1-0.3.fc44.1    fedora      68.9 KiB
 gettext                  ppc64le 0:0.26-4.fc44          fedora      13.6 MiB
 gettext-common-devel     noarch  0:0.26-4.fc44          fedora     593.4 KiB
 gettext-devel            ppc64le 0:0.26-4.fc44          fedora       1.4 MiB
 gettext-envsubst         ppc64le 0:0.26-4.fc44          fedora     106.4 KiB
 gettext-libs             ppc64le 0:0.26-4.fc44          fedora       2.7 MiB
 gettext-runtime          ppc64le 0:0.26-4.fc44          fedora     904.7 KiB
 glibc-devel              ppc64le 0:2.43-1.fc44          fedora       3.7 MiB
 groff-base               ppc64le 0:1.23.0-12.fc44       fedora       4.5 MiB
 gsl                      ppc64le 0:2.8-3.fc44           fedora       4.4 MiB
 htslib                   ppc64le 0:1.23-1.fc44          copr_base    1.6 MiB
 kernel-headers           ppc64le 0:6.19.0-0.rc7.47.fc44 fedora       6.8 MiB
 libasan                  ppc64le 0:16.0.1-0.3.fc44.1    fedora       2.2 MiB
 libatomic                ppc64le 0:16.0.1-0.3.fc44.1    fedora      76.8 KiB
 libmpc                   ppc64le 0:1.3.1-9.fc44         fedora     281.3 KiB
 libtextstyle             ppc64le 0:0.26-4.fc44          fedora     263.1 KiB
 libubsan                 ppc64le 0:16.0.1-0.3.fc44.1    fedora     669.1 KiB
 libxcrypt-devel          ppc64le 0:4.5.2-3.fc44         fedora      31.0 KiB
 m4                       ppc64le 0:1.4.20-3.fc44        fedora     923.4 KiB
 mpdecimal                ppc64le 0:4.0.1-3.fc44         fedora     281.1 KiB
 ncurses                  ppc64le 0:6.5-9.20250614.fc44  fedora     955.9 KiB
 perl-AutoLoader          noarch  0:5.74-521.fc44        fedora      20.6 KiB
 perl-AutoSplit           noarch  0:5.74-521.fc44        fedora      23.1 KiB
 perl-B                   ppc64le 0:1.89-521.fc44        fedora     545.1 KiB
 perl-Benchmark           noarch  0:1.27-521.fc44        fedora      36.4 KiB
 perl-Carp                noarch  0:1.54-521.fc44        fedora      46.6 KiB
 perl-Class-Struct        noarch  0:0.68-521.fc44        fedora      25.4 KiB
 perl-Data-Dumper         ppc64le 0:2.191-522.fc44       fedora     135.2 KiB
 perl-Devel-PPPort        ppc64le 0:3.73-522.fc44        fedora     981.6 KiB
 perl-Digest              noarch  0:1.20-521.fc44        fedora      35.3 KiB
 perl-Digest-MD5          ppc64le 0:2.59-521.fc44        fedora     103.2 KiB
 perl-DynaLoader          ppc64le 0:1.57-521.fc44        fedora      32.1 KiB
 perl-Encode              ppc64le 4:3.21-521.fc44        fedora       4.8 MiB
 perl-Errno               ppc64le 0:1.38-521.fc44        fedora       8.4 KiB
 perl-Exporter            noarch  0:5.79-521.fc44        fedora      54.3 KiB
 perl-ExtUtils-Command    noarch  2:7.76-522.fc44        fedora       9.6 KiB
 perl-ExtUtils-Constant   noarch  0:0.25-521.fc44        fedora      85.9 KiB
 perl-ExtUtils-Install    noarch  0:2.22-521.fc44        fedora      85.5 KiB
 perl-ExtUtils-MakeMaker  noarch  2:7.76-522.fc44        fedora     739.7 KiB
 perl-ExtUtils-Manifest   noarch  1:1.75-521.fc44        fedora      84.8 KiB
 perl-ExtUtils-ParseXS    noarch  1:3.61-2.fc44          fedora     712.7 KiB
 perl-Fcntl               ppc64le 0:1.20-521.fc44        fedora      92.3 KiB
 perl-File-Basename       noarch  0:2.86-521.fc44        fedora      14.0 KiB
 perl-File-Compare        noarch  0:1.100.800-521.fc44   fedora       5.6 KiB
 perl-File-Copy           noarch  0:2.41-521.fc44        fedora      19.7 KiB
 perl-File-Find           noarch  0:1.44-521.fc44        fedora      42.0 KiB
 perl-File-Path           noarch  0:2.18-522.fc44        fedora      63.5 KiB
 perl-File-stat           noarch  0:1.14-521.fc44        fedora      12.5 KiB
 perl-FileHandle          noarch  0:2.05-521.fc44        fedora       9.4 KiB
 perl-Getopt-Std          noarch  0:1.14-521.fc44        fedora      11.2 KiB
 perl-HTTP-Tiny           noarch  0:0.092-2.fc44         fedora     157.6 KiB
 perl-Hash-Util           ppc64le 0:0.32-521.fc44        fedora      98.6 KiB
 perl-Hash-Util-FieldHash ppc64le 0:1.27-521.fc44        fedora     106.3 KiB
 perl-IO                  ppc64le 0:1.55-521.fc44        fedora     191.0 KiB
 perl-IO-Socket-IP        noarch  0:0.43-522.fc44        fedora     100.3 KiB
 perl-IO-Socket-SSL       noarch  0:2.098-2.fc44         fedora     723.5 KiB
 perl-IPC-Open3           noarch  0:1.24-521.fc44        fedora      27.7 KiB
 perl-MIME-Base32         noarch  0:1.303-25.fc44        fedora      30.7 KiB
 perl-MIME-Base64         ppc64le 0:3.16-521.fc44        fedora      93.6 KiB
 perl-Net-SSLeay          ppc64le 0:1.94-12.fc44         fedora       1.5 MiB
 perl-POSIX               ppc64le 0:2.23-521.fc44        fedora     328.1 KiB
 perl-PathTools           ppc64le 0:3.94-521.fc44        fedora     223.8 KiB
 perl-Pod-Escapes         noarch  1:1.07-521.fc44        fedora      24.9 KiB
 perl-Pod-Perldoc         noarch  0:3.28.01-522.fc44     fedora     163.7 KiB
 perl-Pod-Simple          noarch  1:3.47-4.fc44          fedora     565.3 KiB
 perl-Pod-Usage           noarch  4:2.05-521.fc44        fedora      86.3 KiB
 perl-Scalar-List-Utils   ppc64le 5:1.70-2.fc44          fedora     152.5 KiB
 perl-SelectSaver         noarch  0:1.02-521.fc44        fedora       2.2 KiB
 perl-Socket              ppc64le 4:2.040-3.fc44         fedora     143.8 KiB
 perl-Storable            ppc64le 1:3.37-522.fc44        fedora     243.0 KiB
 perl-Symbol              noarch  0:1.09-521.fc44        fedora       6.8 KiB
 perl-Term-ANSIColor      noarch  0:5.01-522.fc44        fedora      97.5 KiB
 perl-Term-Cap            noarch  0:1.18-521.fc44        fedora      29.3 KiB
 perl-Test-Harness        noarch  1:3.52-5.fc44          fedora     560.8 KiB
 perl-Text-ParseWords     noarch  0:3.31-521.fc44        fedora      13.6 KiB
 perl-Text-Tabs+Wrap      noarch  0:2024.001-521.fc44    fedora      22.6 KiB
 perl-Thread-Queue        noarch  0:3.14-521.fc44        fedora      28.9 KiB
 perl-Time-HiRes          ppc64le 4:1.9778-521.fc44      fedora     151.4 KiB
 perl-Time-Local          noarch  2:1.350-521.fc44       fedora      69.0 KiB
 perl-URI                 noarch  0:5.34-3.fc44          fedora     268.0 KiB
 perl-base                noarch  0:2.27-521.fc44        fedora      12.6 KiB
 perl-constant            noarch  0:1.33-522.fc44        fedora      26.2 KiB
 perl-devel               ppc64le 4:5.42.0-521.fc44      fedora       3.8 MiB
 perl-fields              noarch  0:2.27-521.fc44        fedora      11.9 KiB
 perl-if                  noarch  0:0.61.000-521.fc44    fedora       5.8 KiB
 perl-lib                 ppc64le 0:0.65-521.fc44        fedora       8.5 KiB
 perl-libnet              noarch  0:3.15-522.fc44        fedora     289.4 KiB
 perl-libs                ppc64le 4:5.42.0-521.fc44      fedora      12.3 MiB
 perl-locale              noarch  0:1.13-521.fc44        fedora       6.1 KiB
 perl-mro                 ppc64le 0:1.29-521.fc44        fedora      81.1 KiB
 perl-overload            noarch  0:1.40-521.fc44        fedora      71.6 KiB
 perl-overloading         noarch  0:0.02-521.fc44        fedora       4.9 KiB
 perl-parent              noarch  1:0.244-521.fc44       fedora      10.3 KiB
 perl-podlators           noarch  1:6.0.2-521.fc44       fedora     317.5 KiB
 perl-threads             ppc64le 1:2.43-521.fc44        fedora     134.8 KiB
 perl-threads-shared      ppc64le 0:1.70-521.fc44        fedora     103.3 KiB
 perl-vars                noarch  0:1.05-521.fc44        fedora       3.9 KiB
 perl-version             ppc64le 9:0.99.33-522.fc44     fedora     160.3 KiB
 python-pip-wheel         noarch  0:25.3-2.fc44          fedora       1.2 MiB
 python3                  ppc64le 0:3.14.2-3.fc44        fedora      84.6 KiB
 python3-libs             ppc64le 0:3.14.2-3.fc44        fedora      46.6 MiB
 python3-pyparsing        noarch  0:3.1.2-15.fc44        fedora       1.0 MiB
 systemtap-sdt-devel      ppc64le 0:5.4-3.fc44           fedora     184.0 KiB
 systemtap-sdt-dtrace     ppc64le 0:5.4-3.fc44           fedora     180.6 KiB
 tzdata                   noarch  0:2025c-2.fc44         fedora       1.2 MiB

Transaction Summary:
 Installing:       124 packages

Total size of inbound packages is 88 MiB. Need to download 22 MiB.
After this operation, 289 MiB extra will be used (install 289 MiB, remove 0 B).
[  1/124] gcc-0:16.0.1-0.3.fc44.1.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  2/124] make-1:4.4.1-12.fc44.ppc64le  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  3/124] perl-File-Temp-1:0.231.200-2. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  4/124] perl-FindBin-0:1.54-521.fc44. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  5/124] perl-Getopt-Long-1:2.58-521.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  6/124] perl-interpreter-4:5.42.0-521 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  7/124] zlib-ng-compat-devel-0:2.3.2- 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  8/124] htslib-devel-0:1.23-1.fc44.pp 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  9/124] htslib-tools-0:1.23-1.fc44.pp 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 10/124] perl-Carp-0:1.54-521.fc44.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 11/124] perl-Class-Struct-0:0.68-521. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 12/124] perl-Data-Dumper-0:2.191-522. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 13/124] perl-Errno-0:1.38-521.fc44.pp 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 14/124] perl-Exporter-0:5.79-521.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 15/124] perl-File-Basename-0:2.86-521 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 16/124] perl-File-stat-0:1.14-521.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 17/124] perl-IO-0:1.55-521.fc44.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 18/124] perl-POSIX-0:2.23-521.fc44.pp 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 19/124] perl-PathTools-0:3.94-521.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 20/124] perl-Text-ParseWords-0:3.31-5 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 21/124] perl-constant-0:1.33-522.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 22/124] perl-libs-4:5.42.0-521.fc44.p 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 23/124] perl-File-Path-0:2.18-522.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 24/124] cpp-0:16.0.1-0.3.fc44.1.ppc64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 25/124] glibc-devel-0:2.43-1.fc44.ppc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 26/124] libasan-0:16.0.1-0.3.fc44.1.p 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 27/124] libatomic-0:16.0.1-0.3.fc44.1 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 28/124] libmpc-0:1.3.1-9.fc44.ppc64le 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 29/124] libubsan-0:16.0.1-0.3.fc44.1. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 30/124] perl-Fcntl-0:1.20-521.fc44.pp 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 31/124] perl-Scalar-List-Utils-5:1.70 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 32/124] perl-overload-0:1.40-521.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 33/124] perl-parent-1:0.244-521.fc44. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 34/124] perl-Pod-Usage-4:2.05-521.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 35/124] perl-base-0:2.27-521.fc44.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 36/124] cmake-filesystem-0:3.31.10-5. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 37/124] htslib-0:1.23-1.fc44.ppc64le  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 38/124] perl-B-0:1.89-521.fc44.ppc64l 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 39/124] perl-Symbol-0:1.09-521.fc44.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 40/124] perl-SelectSaver-0:1.02-521.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 41/124] perl-Socket-4:2.040-3.fc44.pp 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 42/124] perl-locale-0:1.13-521.fc44.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 43/124] perl-DynaLoader-0:1.57-521.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 44/124] perl-Encode-4:3.21-521.fc44.p 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 45/124] perl-vars-0:1.05-521.fc44.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 46/124] kernel-headers-0:6.19.0-0.rc7 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 47/124] libxcrypt-devel-0:4.5.2-3.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 48/124] perl-Text-Tabs+Wrap-0:2024.00 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 49/124] perl-mro-0:1.29-521.fc44.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 50/124] perl-overloading-0:0.02-521.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 51/124] perl-Pod-Perldoc-0:3.28.01-52 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 52/124] perl-podlators-1:6.0.2-521.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 53/124] perl-if-0:0.61.000-521.fc44.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 54/124] perl-Getopt-Std-0:1.14-521.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 55/124] perl-MIME-Base64-0:3.16-521.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 56/124] perl-Storable-1:3.37-522.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 57/124] groff-base-0:1.23.0-12.fc44.p 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 58/124] perl-HTTP-Tiny-0:0.092-2.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 59/124] perl-IPC-Open3-0:1.24-521.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 60/124] perl-Pod-Simple-1:3.47-4.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 61/124] perl-Term-ANSIColor-0:5.01-52 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 62/124] perl-Term-Cap-0:1.18-521.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 63/124] perl-lib-0:0.65-521.fc44.ppc6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 64/124] perl-IO-Socket-SSL-0:2.098-2. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 65/124] perl-Net-SSLeay-0:1.94-12.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 66/124] perl-Time-HiRes-4:1.9778-521. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 67/124] perl-Time-Local-2:1.350-521.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 68/124] perl-Pod-Escapes-1:1.07-521.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 69/124] ncurses-0:6.5-9.20250614.fc44 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 70/124] perl-IO-Socket-IP-0:0.43-522. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 71/124] perl-URI-0:5.34-3.fc44.noarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 72/124] perl-AutoLoader-0:5.74-521.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 73/124] perl-MIME-Base32-0:1.303-25.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[ 76/124] perl-FileHandle-0:2.05-521.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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>>> Already downloaded
[ 78/124] annobin-plugin-gcc-0:13.05-3. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 79/124] gcc-plugin-annobin-0:16.0.1-0 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 80/124] annobin-docs-0:13.05-3.fc44.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 81/124] gsl-devel-0:2.8-3.fc44.ppc64l 100% |  21.6 KiB/s | 655.1 KiB |  00m30s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/g/gsl-devel-2.8-3.fc44.ppc64le.rpm [Connection timed out after 30001 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/g/gsl-devel-2.8-3.fc44.ppc64le.rpm
[ 82/124] automake-0:1.18.1-4.fc44.noar 100% |  23.7 KiB/s | 723.6 KiB |  00m31s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/a/automake-1.18.1-4.fc44.noarch.rpm [Connection timed out after 30001 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/a/automake-1.18.1-4.fc44.noarch.rpm
[ 83/124] autoconf-0:2.72-10.fc44.noarc 100% |  27.2 KiB/s | 830.9 KiB |  00m31s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/a/autoconf-2.72-10.fc44.noarch.rpm [Connection timed out after 30001 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/a/autoconf-2.72-10.fc44.noarch.rpm
[ 84/124] perl-ExtUtils-Embed-0:1.35-52 100% |  96.9 KiB/s |  17.3 KiB |  00m00s
[ 85/124] emacs-filesystem-1:30.2-2.fc4 100% | 198.9 KiB/s |   8.0 KiB |  00m00s
[ 86/124] gettext-devel-0:0.26-4.fc44.p 100% |   5.8 MiB/s | 293.0 KiB |  00m00s
[ 87/124] m4-0:1.4.20-3.fc44.ppc64le    100% |   6.5 MiB/s | 344.9 KiB |  00m00s
[ 88/124] perl-File-Compare-0:1.100.800 100% | 286.8 KiB/s |  12.9 KiB |  00m00s
[ 89/124] perl-File-Copy-0:2.41-521.fc4 100% | 494.7 KiB/s |  19.8 KiB |  00m00s
[ 90/124] perl-File-Find-0:1.44-521.fc4 100% | 624.9 KiB/s |  25.0 KiB |  00m00s
[ 91/124] perl-Thread-Queue-0:3.14-521. 100% | 533.5 KiB/s |  21.3 KiB |  00m00s
[ 92/124] perl-threads-1:2.43-521.fc44. 100% |   1.4 MiB/s |  58.2 KiB |  00m00s
[ 93/124] perl-devel-4:5.42.0-521.fc44. 100% |  11.0 MiB/s | 662.7 KiB |  00m00s
[ 94/124] gettext-0:0.26-4.fc44.ppc64le 100% |  18.8 MiB/s |   1.7 MiB |  00m00s
[ 95/124] gettext-common-devel-0:0.26-4 100% |  11.3 MiB/s | 603.3 KiB |  00m00s
[ 96/124] gettext-libs-0:0.26-4.fc44.pp 100% |  16.8 MiB/s | 876.3 KiB |  00m00s
[ 97/124] perl-threads-shared-0:1.70-52 100% | 972.8 KiB/s |  45.7 KiB |  00m00s
[ 98/124] gsl-0:2.8-3.fc44.ppc64le      100% |   6.5 MiB/s |   1.3 MiB |  00m00s
[ 99/124] perl-ExtUtils-Constant-0:0.25 100% |   1.1 MiB/s |  43.5 KiB |  00m00s
[100/124] perl-Devel-PPPort-0:3.73-522. 100% |   2.0 MiB/s | 222.1 KiB |  00m00s
[101/124] systemtap-sdt-devel-0:5.4-3.f 100% |   1.6 MiB/s |  69.8 KiB |  00m00s
[102/124] perl-ExtUtils-Install-0:2.22- 100% | 250.0 KiB/s |  43.5 KiB |  00m00s
[103/124] perl-ExtUtils-ParseXS-1:3.61- 100% |   1.6 MiB/s | 292.6 KiB |  00m00s
[104/124] gettext-runtime-0:0.26-4.fc44 100% |   4.4 MiB/s | 194.4 KiB |  00m00s
[105/124] libtextstyle-0:0.26-4.fc44.pp 100% |   2.5 MiB/s | 104.6 KiB |  00m00s
[106/124] perl-AutoSplit-0:5.74-521.fc4 100% | 519.1 KiB/s |  21.3 KiB |  00m00s
[107/124] perl-ExtUtils-MakeMaker-2:7.7 100% |   6.4 MiB/s | 294.6 KiB |  00m00s
[108/124] systemtap-sdt-dtrace-0:5.4-3. 100% | 387.3 KiB/s |  70.5 KiB |  00m00s
[109/124] python3-0:3.14.2-3.fc44.ppc64 100% | 702.8 KiB/s |  28.1 KiB |  00m00s
[110/124] gettext-envsubst-0:0.26-4.fc4 100% | 981.9 KiB/s |  39.3 KiB |  00m00s
[111/124] perl-fields-0:2.27-521.fc44.n 100% | 159.5 KiB/s |  15.8 KiB |  00m00s
[112/124] perl-ExtUtils-Command-2:7.76- 100% | 343.2 KiB/s |  14.1 KiB |  00m00s
[113/124] perl-Test-Harness-1:3.52-5.fc 100% |   6.1 MiB/s | 276.9 KiB |  00m00s
[114/124] perl-ExtUtils-Manifest-1:1.75 100% | 340.4 KiB/s |  34.0 KiB |  00m00s
[115/124] python3-pyparsing-0:3.1.2-15. 100% |   1.6 MiB/s | 286.8 KiB |  00m00s
[116/124] perl-Hash-Util-0:0.32-521.fc4 100% | 848.6 KiB/s |  34.8 KiB |  00m00s
[117/124] python3-libs-0:3.14.2-3.fc44. 100% |  62.3 MiB/s |  10.0 MiB |  00m00s
[118/124] perl-version-9:0.99.33-522.fc 100% | 327.1 KiB/s |  63.8 KiB |  00m00s
[119/124] perl-Benchmark-0:1.27-521.fc4 100% | 195.8 KiB/s |  26.4 KiB |  00m00s
[120/124] mpdecimal-0:4.0.1-3.fc44.ppc6 100% |   2.7 MiB/s | 111.4 KiB |  00m00s
[121/124] expat-0:2.7.3-2.fc44.ppc64le  100% |   3.0 MiB/s | 129.0 KiB |  00m00s
[122/124] tzdata-0:2025c-2.fc44.noarch  100% |  14.5 MiB/s | 714.3 KiB |  00m00s
[123/124] python-pip-wheel-0:25.3-2.fc4 100% |  20.6 MiB/s |   1.1 MiB |  00m00s
[124/124] perl-Hash-Util-FieldHash-0:1. 100% | 368.0 KiB/s |  39.4 KiB |  00m00s
--------------------------------------------------------------------------------
[124/124] Total                         100% | 715.5 KiB/s |  22.3 MiB |  00m32s
Running transaction
[  1/126] Verify package files          100% |  93.0   B/s | 124.0   B |  00m01s
[  2/126] Prepare transaction           100% | 601.0   B/s | 124.0   B |  00m00s
[  3/126] Installing libtextstyle-0:0.2 100% |  64.4 MiB/s | 263.9 KiB |  00m00s
[  4/126] Installing gettext-libs-0:0.2 100% | 115.7 MiB/s |   2.7 MiB |  00m00s
[  5/126] Installing htslib-0:1.23-1.fc 100% |  97.2 MiB/s |   1.7 MiB |  00m00s
[  6/126] Installing libmpc-0:1.3.1-9.f 100% |  69.1 MiB/s | 282.9 KiB |  00m00s
[  7/126] Installing cpp-0:16.0.1-0.3.f 100% | 112.6 MiB/s |  39.1 MiB |  00m00s
[  8/126] Installing annobin-docs-0:13. 100% |   8.2 MiB/s | 100.3 KiB |  00m00s
[  9/126] Installing tzdata-0:2025c-2.f 100% |  11.5 MiB/s |   1.5 MiB |  00m00s
[ 10/126] Installing python-pip-wheel-0 100% | 172.0 MiB/s |   1.2 MiB |  00m00s
[ 11/126] Installing mpdecimal-0:4.0.1- 100% |  69.0 MiB/s | 282.7 KiB |  00m00s
[ 12/126] Installing expat-0:2.7.3-2.fc 100% |   7.3 MiB/s | 426.6 KiB |  00m00s
[ 13/126] Installing python3-libs-0:3.1 100% | 100.4 MiB/s |  47.0 MiB |  00m00s
[ 14/126] Installing python3-0:3.14.2-3 100% |   2.1 MiB/s |  86.4 KiB |  00m00s
[ 15/126] Installing python3-pyparsing- 100% |  85.8 MiB/s |   1.0 MiB |  00m00s
[ 16/126] Installing systemtap-sdt-dtra 100% |   4.2 MiB/s | 181.9 KiB |  00m00s
[ 17/126] Installing ncurses-0:6.5-9.20 100% |  19.2 MiB/s | 962.5 KiB |  00m00s
[ 18/126] Installing gettext-envsubst-0 100% |   2.5 MiB/s | 107.9 KiB |  00m00s
[ 19/126] Installing gettext-runtime-0: 100% |  16.6 MiB/s | 915.3 KiB |  00m00s
[ 20/126] Installing gettext-0:0.26-4.f 100% |  93.0 MiB/s |  13.7 MiB |  00m00s
[ 21/126] Installing groff-base-0:1.23. 100% |  47.0 MiB/s |   4.5 MiB |  00m00s
[ 22/126] Installing perl-Digest-0:1.20 100% |  18.1 MiB/s |  37.1 KiB |  00m00s
[ 23/126] Installing perl-Digest-MD5-0: 100% |  34.2 MiB/s | 105.1 KiB |  00m00s
[ 24/126] Installing perl-FileHandle-0: 100% |   9.6 MiB/s |   9.8 KiB |  00m00s
[ 25/126] Installing perl-B-0:1.89-521. 100% |  76.5 MiB/s | 548.5 KiB |  00m00s
[ 26/126] Installing perl-libnet-0:3.15 100% |  48.0 MiB/s | 294.7 KiB |  00m00s
[ 27/126] Installing perl-MIME-Base32-0 100% |  15.7 MiB/s |  32.2 KiB |  00m00s
[ 28/126] Installing perl-Data-Dumper-0 100% |  33.5 MiB/s | 137.1 KiB |  00m00s
[ 29/126] Installing perl-URI-0:5.34-3. 100% |  25.0 MiB/s | 281.8 KiB |  00m00s
[ 30/126] Installing perl-AutoLoader-0: 100% |  20.5 MiB/s |  21.0 KiB |  00m00s
[ 31/126] Installing perl-IO-Socket-IP- 100% |  33.3 MiB/s | 102.2 KiB |  00m00s
[ 32/126] Installing perl-IO-Socket-SSL 100% |  79.0 MiB/s | 727.6 KiB |  00m00s
[ 33/126] Installing perl-Net-SSLeay-0: 100% |  74.2 MiB/s |   1.6 MiB |  00m00s
[ 34/126] Installing perl-Pod-Escapes-1 100% |  12.7 MiB/s |  25.9 KiB |  00m00s
[ 35/126] Installing perl-Time-Local-2: 100% |  34.5 MiB/s |  70.6 KiB |  00m00s
[ 36/126] Installing perl-Time-HiRes-4: 100% |  37.5 MiB/s | 153.4 KiB |  00m00s
[ 37/126] Installing perl-if-0:0.61.000 100% |   6.1 MiB/s |   6.2 KiB |  00m00s
[ 38/126] Installing perl-Text-Tabs+Wra 100% |  11.7 MiB/s |  23.9 KiB |  00m00s
[ 39/126] Installing perl-File-Path-0:2 100% |  31.5 MiB/s |  64.5 KiB |  00m00s
[ 40/126] Installing perl-locale-0:1.13 100% |   6.4 MiB/s |   6.5 KiB |  00m00s
[ 41/126] Installing perl-File-Temp-1:0 100% |  40.4 MiB/s | 165.5 KiB |  00m00s
[ 42/126] Installing perl-Pod-Simple-1: 100% |  56.1 MiB/s | 574.9 KiB |  00m00s
[ 43/126] Installing perl-HTTP-Tiny-0:0 100% |  52.0 MiB/s | 159.7 KiB |  00m00s
[ 44/126] Installing perl-Term-Cap-0:1. 100% |  14.9 MiB/s |  30.6 KiB |  00m00s
[ 45/126] Installing perl-Term-ANSIColo 100% |  32.3 MiB/s |  99.2 KiB |  00m00s
[ 46/126] Installing perl-IPC-Open3-0:1 100% |  13.9 MiB/s |  28.5 KiB |  00m00s
[ 47/126] Installing perl-POSIX-0:2.23- 100% |  80.4 MiB/s | 329.3 KiB |  00m00s
[ 48/126] Installing perl-Class-Struct- 100% |  12.7 MiB/s |  25.9 KiB |  00m00s
[ 49/126] Installing perl-Pod-Perldoc-0 100% |   3.8 MiB/s | 169.2 KiB |  00m00s
[ 50/126] Installing perl-podlators-1:6 100% |   7.1 MiB/s | 321.4 KiB |  00m00s
[ 51/126] Installing perl-File-stat-0:1 100% |  12.8 MiB/s |  13.1 KiB |  00m00s
[ 52/126] Installing perl-Socket-4:2.04 100% |  47.5 MiB/s | 145.8 KiB |  00m00s
[ 53/126] Installing perl-SelectSaver-0 100% |   2.6 MiB/s |   2.6 KiB |  00m00s
[ 54/126] Installing perl-Symbol-0:1.09 100% |   7.1 MiB/s |   7.3 KiB |  00m00s
[ 55/126] Installing perl-Pod-Usage-4:2 100% |   2.1 MiB/s |  87.9 KiB |  00m00s
[ 56/126] Installing perl-overloading-0 100% |   2.7 MiB/s |   5.6 KiB |  00m00s
[ 57/126] Installing perl-IO-0:1.55-521 100% |  38.1 MiB/s | 195.2 KiB |  00m00s
[ 58/126] Installing perl-mro-0:1.29-52 100% |  40.1 MiB/s |  82.2 KiB |  00m00s
[ 59/126] Installing perl-base-0:2.27-5 100% |  12.7 MiB/s |  13.0 KiB |  00m00s
[ 60/126] Installing perl-Fcntl-0:1.20- 100% |  45.6 MiB/s |  93.5 KiB |  00m00s
[ 61/126] Installing perl-Text-ParseWor 100% |   7.1 MiB/s |  14.6 KiB |  00m00s
[ 62/126] Installing perl-Getopt-Long-1 100% |  35.9 MiB/s | 147.2 KiB |  00m00s
[ 63/126] Installing perl-Storable-1:3. 100% |  59.7 MiB/s | 244.6 KiB |  00m00s
[ 64/126] Installing perl-MIME-Base64-0 100% |  31.2 MiB/s |  95.8 KiB |  00m00s
[ 65/126] Installing perl-Getopt-Std-0: 100% |  11.5 MiB/s |  11.8 KiB |  00m00s
[ 66/126] Installing perl-overload-0:1. 100% |  35.2 MiB/s |  72.0 KiB |  00m00s
[ 67/126] Installing perl-vars-0:1.05-5 100% |   4.2 MiB/s |   4.3 KiB |  00m00s
[ 68/126] Installing perl-parent-1:0.24 100% |  10.7 MiB/s |  11.0 KiB |  00m00s
[ 69/126] Installing perl-Scalar-List-U 100% |  30.5 MiB/s | 156.2 KiB |  00m00s
[ 70/126] Installing perl-constant-0:1. 100% |  13.4 MiB/s |  27.4 KiB |  00m00s
[ 71/126] Installing perl-File-Basename 100% |  14.3 MiB/s |  14.6 KiB |  00m00s
[ 72/126] Installing perl-Errno-0:1.38- 100% |   4.3 MiB/s |   8.8 KiB |  00m00s
[ 73/126] Installing perl-Encode-4:3.21 100% |  61.2 MiB/s |   4.8 MiB |  00m00s
[ 74/126] Installing perl-DynaLoader-0: 100% |  15.9 MiB/s |  32.5 KiB |  00m00s
[ 75/126] Installing perl-PathTools-0:3 100% |  44.6 MiB/s | 228.3 KiB |  00m00s
[ 76/126] Installing perl-Exporter-0:5. 100% |  27.1 MiB/s |  55.6 KiB |  00m00s
[ 77/126] Installing perl-Carp-0:1.54-5 100% |   7.8 MiB/s |  47.7 KiB |  00m00s
[ 78/126] Installing perl-libs-4:5.42.0 100% |  81.3 MiB/s |  12.4 MiB |  00m00s
[ 79/126] Installing perl-interpreter-4 100% |   4.2 MiB/s | 176.1 KiB |  00m00s
[ 80/126] Installing perl-File-Find-0:1 100% |  20.8 MiB/s |  42.5 KiB |  00m00s
[ 81/126] Installing perl-File-Copy-0:2 100% |  19.7 MiB/s |  20.2 KiB |  00m00s
[ 82/126] Installing perl-File-Compare- 100% |   6.0 MiB/s |   6.2 KiB |  00m00s
[ 83/126] Installing perl-threads-1:2.4 100% |  44.5 MiB/s | 136.8 KiB |  00m00s
[ 84/126] Installing perl-threads-share 100% |  25.8 MiB/s | 105.5 KiB |  00m00s
[ 85/126] Installing perl-Thread-Queue- 100% |  14.8 MiB/s |  30.4 KiB |  00m00s
[ 86/126] Installing perl-ExtUtils-Comm 100% |   5.0 MiB/s |  10.2 KiB |  00m00s
[ 87/126] Installing perl-ExtUtils-Mani 100% |  28.1 MiB/s |  86.3 KiB |  00m00s
[ 88/126] Installing perl-Devel-PPPort- 100% |  96.1 MiB/s | 984.0 KiB |  00m00s
[ 89/126] Installing perl-ExtUtils-Cons 100% |  42.8 MiB/s |  87.7 KiB |  00m00s
[ 90/126] Installing perl-AutoSplit-0:5 100% |  11.5 MiB/s |  23.6 KiB |  00m00s
[ 91/126] Installing perl-lib-0:0.65-52 100% |   8.7 MiB/s |   8.9 KiB |  00m00s
[ 92/126] Installing perl-version-9:0.9 100% |  39.8 MiB/s | 163.1 KiB |  00m00s
[ 93/126] Installing perl-Benchmark-0:1 100% |  18.0 MiB/s |  36.8 KiB |  00m00s
[ 94/126] Installing perl-Test-Harness- 100% |   9.7 MiB/s | 583.6 KiB |  00m00s
[ 95/126] Installing perl-Hash-Util-Fie 100% |  26.4 MiB/s | 108.1 KiB |  00m00s
[ 96/126] Installing perl-Hash-Util-0:0 100% |  48.8 MiB/s | 100.0 KiB |  00m00s
[ 97/126] Installing perl-fields-0:2.27 100% |  12.0 MiB/s |  12.3 KiB |  00m00s
[ 98/126] Installing perl-ExtUtils-Pars 100% |  14.6 MiB/s | 718.5 KiB |  00m00s
[ 99/126] Installing perl-ExtUtils-Make 100% |  14.4 MiB/s | 750.3 KiB |  00m00s
[100/126] Installing perl-ExtUtils-Inst 100% |  28.4 MiB/s |  87.2 KiB |  00m00s
[101/126] Installing systemtap-sdt-deve 100% |  20.1 MiB/s | 185.5 KiB |  00m00s
[102/126] Installing kernel-headers-0:6 100% |  47.8 MiB/s |   7.0 MiB |  00m00s
[103/126] Installing glibc-devel-0:2.43 100% |  55.2 MiB/s |   3.8 MiB |  00m00s
[104/126] Installing libxcrypt-devel-0: 100% |  10.8 MiB/s |  33.3 KiB |  00m00s
[105/126] Installing perl-devel-4:5.42. 100% |  52.2 MiB/s |   3.8 MiB |  00m00s
[106/126] Installing gettext-common-dev 100% | 144.9 MiB/s | 593.7 KiB |  00m00s
[107/126] Installing gettext-devel-0:0. 100% |  24.7 MiB/s |   1.4 MiB |  00m00s
[108/126] Installing cmake-filesystem-0 100% |   1.5 MiB/s |   7.6 KiB |  00m00s
[109/126] Installing gsl-0:2.8-3.fc44.p 100% |  58.3 MiB/s |   4.4 MiB |  00m00s
[110/126] Installing libubsan-0:16.0.1- 100% |  93.5 MiB/s | 669.9 KiB |  00m00s
[111/126] Installing libatomic-0:16.0.1 100% |  38.0 MiB/s |  77.9 KiB |  00m00s
[112/126] Installing libasan-0:16.0.1-0 100% | 127.5 MiB/s |   2.2 MiB |  00m00s
[113/126] Installing m4-0:1.4.20-3.fc44 100% |  17.5 MiB/s | 929.9 KiB |  00m00s
[114/126] Installing emacs-filesystem-1 100% | 396.5 KiB/s | 812.0   B |  00m00s
[115/126] Installing autoconf-0:2.72-10 100% |  43.1 MiB/s |   2.8 MiB |  00m00s
[116/126] Installing make-1:4.4.1-12.fc 100% |  31.4 MiB/s |   1.9 MiB |  00m00s
[117/126] Installing gcc-0:16.0.1-0.3.f 100% | 122.8 MiB/s | 106.8 MiB |  00m01s
[118/126] Installing annobin-plugin-gcc 100% |  27.7 MiB/s | 709.3 KiB |  00m00s
[119/126] Installing gcc-plugin-annobin 100% |   2.7 MiB/s |  70.6 KiB |  00m00s
[120/126] Installing automake-0:1.18.1- 100% |  24.5 MiB/s |   1.8 MiB |  00m00s
[121/126] Installing gsl-devel-0:2.8-3. 100% |  23.5 MiB/s |   1.7 MiB |  00m00s
[122/126] Installing zlib-ng-compat-dev 100% |  35.3 MiB/s | 108.6 KiB |  00m00s
[123/126] Installing perl-ExtUtils-Embe 100% |  15.7 MiB/s |  16.1 KiB |  00m00s
[124/126] Installing perl-FindBin-0:1.5 100% |   7.0 MiB/s |   7.2 KiB |  00m00s
[125/126] Installing htslib-devel-0:1.2 100% |  63.4 MiB/s | 454.4 KiB |  00m00s
[126/126] Installing htslib-tools-0:1.2 100% |   9.7 MiB/s |   4.6 MiB |  00m00s
Warning: skipped OpenPGP checks for 3 packages from repository: copr_base
Complete!
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769385600
Wrote: /builddir/build/SRPMS/bcftools-1.23-1.fc44.src.rpm
Updating and loading repositories:
 Copr repository                        100% |   6.1 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |  12.2 KiB/s |   3.4 KiB |  00m00s
Repositories loaded.
Package "autoconf-2.72-10.fc44.noarch" is already installed.
Package "automake-1.18.1-4.fc44.noarch" is already installed.
Package "gcc-16.0.1-0.3.fc44.1.ppc64le" is already installed.
Package "gsl-devel-2.8-3.fc44.ppc64le" is already installed.
Package "htslib-devel-1.23-1.fc44.ppc64le" is already installed.
Package "htslib-tools-1.23-1.fc44.ppc64le" is already installed.
Package "make-1:4.4.1-12.fc44.ppc64le" is already installed.
Package "perl-ExtUtils-Embed-1.35-521.fc44.noarch" is already installed.
Package "perl-File-Temp-1:0.231.200-2.fc44.noarch" is already installed.
Package "perl-FindBin-1.54-521.fc44.noarch" is already installed.
Package "perl-Getopt-Long-1:2.58-521.fc44.noarch" is already installed.
Package "perl-interpreter-4:5.42.0-521.fc44.ppc64le" is already installed.
Package "zlib-ng-compat-devel-2.3.2-3.fc44.ppc64le" is already installed.

Nothing to do.
Finish: build setup for bcftools-1.23-1.fc44.src.rpm
Start: rpmbuild bcftools-1.23-1.fc44.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769385600
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.vkP6eg
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.WDIPJ3
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ rm -rf bcftools-1.23
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bcftools-1.23.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bcftools-1.23
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (bcftools-1.23-perl-fix-stray-errors-ldflags.patch):
+ echo 'Patch #0 (bcftools-1.23-perl-fix-stray-errors-ldflags.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file configure.ac
+ sed -i '1s|/usr/bin/env perl|/usr/bin/perl|' misc/color-chrs.pl misc/demo-flt.pl misc/run-roh.pl misc/vcfutils.pl misc/plot-vcfstats
+ sed -i '1s|/usr/bin/env python3\{0,1\}|/usr/bin/python3|' misc/gff2gff.py misc/guess-ploidy.py misc/plot-roh.py
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.hZnAsE
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.23
+ autoreconf -fiv
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force 
autoreconf: configure.ac: tracing
autoreconf: configure.ac: subdirectory $HTSDIR not present
autoreconf: configure.ac: not using Libtool
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: configure.ac: not needing autopoint
autoreconf: running: /usr/bin/autoconf --force
configure.ac:94: warning: _AC_CONFIG_SUBDIRS: you should use literals
./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:94: the top level
autoreconf: running: /usr/bin/autoheader --force
autoreconf: configure.ac: not using Automake
autoreconf: Leaving directory '.'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.23/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./htslib-1.23/config.guess
++ basename ./htslib-1.23/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./htslib-1.23/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './htslib-1.23/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.23/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./htslib-1.23/config.sub
++ basename ./htslib-1.23/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./htslib-1.23/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './htslib-1.23/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=ppc64le-redhat-linux --host=ppc64le-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  ' --prefix=/usr --with-htslib=system --enable-perl-filters --enable-libgsl '--with-bcf-plugin-path=/usr/local/libexec/bcftools:$(plugindir)'
checking for ppc64le-redhat-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for gcc option to enable large file support... none needed
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking shared library type... plain .so
checking for library containing dlopen... none required
checking if the compiler accepts -rdynamic... yes
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for gsl/gsl_version.h... yes
checking for library containing cblas_dgemm... -lgslcblas
checking for gsl_multifit_gradient in -lgsl... yes
configure: removing -specs=...redhat-hardened... from Perl options
checking for library containing Perl_call_pv... -lperl
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
configure: License has been changed to GPL.

Linking against the GNU scientific library requires that the resulting
binary is licensed using the GNU General Public License.  In particular,
this means you will have to follow the terms of this license in order
to distribute binary copies.  For more information see the INSTALL file.

Text of the GNU General Public License can be found in the LICENSE file,
or at http://www.gnu.org/copyleft/gpl.html

Information on the GNU Scientific Library, including the rationale for
its choice of license can be found at https://www.gnu.org/software/gsl/

+ /usr/bin/make -O -j5 V=1 VERBOSE=1
echo '#define BCFTOOLS_VERSION "1.23"' > version.h
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o tabix.o tabix.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfindex.o vcfindex.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfquery.o vcfquery.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfisec.o vcfisec.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcffilter.o vcffilter.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfsom.o vcfsom.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfstats.o vcfstats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfgtcheck.o vcfgtcheck.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfview.o vcfview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfroh.o vcfroh.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfnorm.o vcfnorm.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfconcat.o vcfconcat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfmerge.o vcfmerge.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcmp.o vcmp.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfcall.o vcfcall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o gvcf.o gvcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o mcall.o mcall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -c -o filter.o filter.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o tsv2vcf.o tsv2vcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfannotate.o vcfannotate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfhead.o vcfhead.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o reheader.o reheader.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o HMM.o HMM.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfcnv.o vcfcnv.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bin.o bin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o ploidy.o ploidy.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o hclust.o hclust.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o version.o version.c
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfconvert.o vcfconvert.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o consensus.o consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o smpl_ilist.o smpl_ilist.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o regidx.o regidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o convert.o convert.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfbuf.o vcfbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o mpileup.o mpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf.o bam2bcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf_iaux.o bam2bcf_iaux.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf_indel.o bam2bcf_indel.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o read_consensus.o read_consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o cols.o cols.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o vcfsort.o vcfsort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o extsort.o extsort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam2bcf_edlib.o bam2bcf_edlib.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o dist.o dist.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o bam_sample.o bam_sample.c
bam_sample.c: In function ‘bam_smpl_add_bam’:
bam_sample.c:172:21: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  172 |         char *eol = strchr(q + 3, '\n');
      |                     ^~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o em.o em.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o ccall.o ccall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o kmin.o kmin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o str_finder.o str_finder.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o prob1.o prob1.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o csq.o csq.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o abuf.o abuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o edlib.o edlib.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o mpileup2/mpileup.o mpileup2/mpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.   -DPLUGINPATH='"/usr/local/libexec/bcftools:/usr/libexec/bcftools"' -c -o vcfplugin.o vcfplugin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o peakfit.o peakfit.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o test/test-rbuf.o test/test-rbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o polysomy.o polysomy.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o test/test-regidx.o test/test-regidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -c -o gff.o gff.c
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/GTsubset.so version.c plugins/GTsubset.c  
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/add-variantkey.so version.c plugins/add-variantkey.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/GTisec.so version.c plugins/GTisec.c  
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/allele-length.so version.c plugins/allele-length.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/af-dist.so bin.c version.c plugins/af-dist.c  
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/check-ploidy.so version.c plugins/check-ploidy.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/check-sparsity.so version.c plugins/check-sparsity.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/counts.so version.c plugins/counts.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/contrast.so version.c plugins/contrast.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fill-AN-AC.so version.c plugins/fill-AN-AC.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/dosage.so version.c plugins/dosage.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/color-chrs.so HMM.c version.c plugins/color-chrs.c  
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fixref.so version.c plugins/fixref.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/frameshifts.so version.c plugins/frameshifts.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fixploidy.so ploidy.c regidx.c version.c plugins/fixploidy.c  
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fill-tags.so version.c plugins/fill-tags.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/guess-ploidy.so version.c plugins/guess-ploidy.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/gvcfz.so version.c plugins/gvcfz.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/impute-info.so version.c plugins/impute-info.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/ad-bias.so convert.c version.c plugins/ad-bias.c  
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/isecGT.so smpl_ilist.c version.c plugins/isecGT.c  
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/missing2ref.so version.c plugins/missing2ref.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/indel-stats.so version.c plugins/indel-stats.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/parental-origin.so version.c plugins/parental-origin.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/remove-overlaps.so version.c plugins/remove-overlaps.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/prune.so version.c plugins/prune.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/mendelian2.so version.c plugins/mendelian2.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/smpl-stats.so version.c plugins/smpl-stats.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/scatter.so version.c plugins/scatter.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/setGT.so version.c plugins/setGT.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/tag2tag.so version.c plugins/tag2tag.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/split.so version.c plugins/split.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/split-vep.so version.c plugins/split-vep.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/trio-switch-rate.so version.c plugins/trio-switch-rate.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/trio-stats.so version.c plugins/trio-stats.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/variant-distance.so version.c plugins/variant-distance.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/variantkey-hex.so version.c plugins/variantkey-hex.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.   -DUSE_GPL -c -o main.o main.c
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/test-rbuf test/test-rbuf.o -lz  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/trio-dnm2.so version.c plugins/trio-dnm2.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/test-regidx test/test-regidx.o regidx.o -lhts -lpthread -lz  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/fill-from-fasta.so filter.c version.c plugins/fill-from-fasta.c  
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/vrfs.so version.c plugins/vrfs.c  
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o plugins/vcf2table.so version.c plugins/vcf2table.c 
version.c: In function ‘init_index2’:
version.c:163:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  163 |     char *delim = strstr(fname, HTS_IDX_DELIM);
      |                   ^~~~~~
plugins/vcf2table.c: In function ‘process’:
plugins/vcf2table.c:1066:18: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
 1066 |       char* eq = strchr(info, '=');
      |                  ^~~~~~
gcc -rdynamic  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o vcfhead.o HMM.o consensus.o ploidy.o bin.o hclust.o version.o regidx.o smpl_ilist.o csq.o vcfbuf.o mpileup.o bam2bcf.o bam2bcf_indel.o bam2bcf_iaux.o bam2bcf_edlib.o read_consensus.o bam_sample.o vcfsort.o cols.o extsort.o dist.o abuf.o ccall.o em.o prob1.o kmin.o str_finder.o gff.o edlib.o mpileup2/mpileup.o polysomy.o peakfit.o vcfplugin.o -lhts -lm -lz   -lgsl -lgslcblas -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fstack-protector-strong -L/usr/local/lib -L/usr/lib64/perl5/CORE -lperl -lpthread -lresolv -ldl -lm -lcrypt -lutil -lc -lpthread
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.EsoqD9
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ '[' /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
++ dirname /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/bcftools-1.23-build
+ mkdir /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.23
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/bcftools-1.23-build/BUILDROOT 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/bin /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/man/man1 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/libexec/bcftools
/usr/bin/install -p bcftools /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/bin
/usr/bin/install -p misc/color-chrs.pl misc/gff2gff misc/gff2gff.py misc/guess-ploidy.py misc/plot-vcfstats misc/plot-roh.py misc/roh-viz misc/run-roh.pl misc/vcfutils.pl misc/vrfs-variances /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/bin
/usr/bin/install -p -m 644 doc/bcftools.1 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/man/man1
/usr/bin/install -p plugins/*.so /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/libexec/bcftools
+ /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 1.23-1.fc44 --unique-debug-suffix -1.23-1.fc44.ppc64le --unique-debug-src-base bcftools-1.23-1.fc44.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23
find-debuginfo: starting
Extracting debug info from 42 files
DWARF-compressing 42 files
sepdebugcrcfix: Updated 42 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bcftools-1.23-1.fc44.ppc64le
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/vrfs-variances from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/roh-viz from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/gff2gff from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j5
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j5 /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
Scanned 20 directories and 231 files,
    processed 1 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr
Scanned 19 directories and 231 files,
    considered 231 files, read 8 files, linked 0 files, 0 errors
    sum of sizes of linked files: 0 bytes
Reading /builddir/build/BUILD/bcftools-1.23-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.ii8C6P
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.23
+ ldd bcftools
+ grep -E '/lib(64)?(/lp64d)?/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x00007fff89ab0000)
+ make test
./test/test-rbuf
Inserted 1-9 starting at offset 5:
  5  6  7  8  9  0  1  2  3
  1  2  3  4  5  6  7  8  9
4th is 4
Deleting 1-2:
  7  8  9  0  1  2  3
  3  4  5  6  7  8  9
Prepending 0-8:
  8  9  0  1  2  3  4  5  6  7
  8  7  6  5  4  3  2  1  0  3
Expanding:
  8  9 10 11 12 13 14 15 16 17
  8  7  6  5  4  3  2  1  0  3
./test/test-regidx
REF_PATH=: ./test/test.pl --plugins --exec bgzip= --exec tabix= --htsdir= ${TEST_OPTS:-}
test_usage:
	bcftools
./test/test.pl: module IO::Pty not found; skipping usage tests
test_tabix:
	tabix /tmp/LPHPr3nTR8/merge.a.vcf.gz 2:3199812-3199812
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/merge.a.bcf 2:3199812-3199812
.. ok

test_tabix:
	tabix /tmp/LPHPr3nTR8/merge.a.vcf.gz 1:3000151-3000151
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/merge.a.bcf 1:3000151-3000151
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H /tmp/LPHPr3nTR8/large_chrom_csi_limit.bcf chr20
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/LPHPr3nTR8/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/LPHPr3nTR8/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/LPHPr3nTR8/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/LPHPr3nTR8/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/LPHPr3nTR8/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/LPHPr3nTR8/idx.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/LPHPr3nTR8/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/LPHPr3nTR8/idx.bcf.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/LPHPr3nTR8/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/LPHPr3nTR8/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -s /tmp/LPHPr3nTR8/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/LPHPr3nTR8/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/LPHPr3nTR8/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/LPHPr3nTR8/empty.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/LPHPr3nTR8/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools index -n /tmp/LPHPr3nTR8/empty.bcf.csi
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s - /tmp/LPHPr3nTR8/check.vcf.gz | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s - | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/misc/plot-vcfstats -m /tmp/LPHPr3nTR8/check.1.chk /tmp/LPHPr3nTR8/check.2.chk /tmp/LPHPr3nTR8/check.3.chk /tmp/LPHPr3nTR8/check.4.chk | grep -v 'plot-vcfstats' | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s -  /tmp/LPHPr3nTR8/stats.a.vcf.gz /tmp/LPHPr3nTR8/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s B  /tmp/LPHPr3nTR8/stats.a.vcf.gz /tmp/LPHPr3nTR8/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s -  /tmp/LPHPr3nTR8/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s - -i 'type="snp"'  /tmp/LPHPr3nTR8/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools stats -s -  /tmp/LPHPr3nTR8/stats.vaf.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -w 2 --no-version /tmp/LPHPr3nTR8/isec.match-id.1.1.vcf.gz /tmp/LPHPr3nTR8/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -w 2 -c id --no-version /tmp/LPHPr3nTR8/isec.match-id.1.1.vcf.gz /tmp/LPHPr3nTR8/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 /tmp/LPHPr3nTR8/isec.a.vcf.gz /tmp/LPHPr3nTR8/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -i"STRLEN(REF)==2" /tmp/LPHPr3nTR8/isec.a.vcf.gz /tmp/LPHPr3nTR8/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -c both /tmp/LPHPr3nTR8/isec.a.vcf.gz /tmp/LPHPr3nTR8/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n =2 -c any /tmp/LPHPr3nTR8/isec.a.vcf.gz /tmp/LPHPr3nTR8/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -C -c any /tmp/LPHPr3nTR8/isec.a.vcf.gz /tmp/LPHPr3nTR8/isec.b.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec --no-version   -T /tmp/LPHPr3nTR8/isec.tab.gz /tmp/LPHPr3nTR8/isec.a.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -Ob  -T /tmp/LPHPr3nTR8/isec.tab.gz /tmp/LPHPr3nTR8/isec.a.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/LPHPr3nTR8/isec-miss.1.1.vcf.gz /tmp/LPHPr3nTR8/isec-miss.1.2.vcf.gz /tmp/LPHPr3nTR8/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/isec-miss.1.regs.txt -n +1 /tmp/LPHPr3nTR8/isec-miss.1.1.vcf.gz /tmp/LPHPr3nTR8/isec-miss.1.2.vcf.gz /tmp/LPHPr3nTR8/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/LPHPr3nTR8/isec-miss.2.1.vcf.gz /tmp/LPHPr3nTR8/isec-miss.2.2.vcf.gz /tmp/LPHPr3nTR8/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools isec -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/isec-miss.1.regs.txt -n +1 /tmp/LPHPr3nTR8/isec-miss.2.1.vcf.gz /tmp/LPHPr3nTR8/isec-miss.2.2.vcf.gz /tmp/LPHPr3nTR8/isec-miss.2.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.broken-gvcf.a.vcf.gz /tmp/LPHPr3nTR8/merge.broken-gvcf.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.broken-gvcf.a.vcf.gz /tmp/LPHPr3nTR8/merge.broken-gvcf.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.broken-gvcf.a.bcf /tmp/LPHPr3nTR8/merge.broken-gvcf.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.broken-gvcf.a.bcf /tmp/LPHPr3nTR8/merge.broken-gvcf.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.symbolic.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.symbolic.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.symbolic.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.symbolic.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.symbolic.1.a.bcf /tmp/LPHPr3nTR8/merge.symbolic.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.symbolic.1.a.bcf /tmp/LPHPr3nTR8/merge.symbolic.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/LPHPr3nTR8/merge.multiallelics.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/LPHPr3nTR8/merge.multiallelics.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/LPHPr3nTR8/merge.multiallelics.1.a.bcf /tmp/LPHPr3nTR8/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/LPHPr3nTR8/merge.multiallelics.1.a.bcf /tmp/LPHPr3nTR8/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/LPHPr3nTR8/merge.multiallelics.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/LPHPr3nTR8/merge.multiallelics.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/LPHPr3nTR8/merge.multiallelics.1.a.bcf /tmp/LPHPr3nTR8/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/LPHPr3nTR8/merge.multiallelics.1.a.bcf /tmp/LPHPr3nTR8/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/LPHPr3nTR8/merge.12.a.vcf.gz /tmp/LPHPr3nTR8/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/LPHPr3nTR8/merge.12.a.vcf.gz /tmp/LPHPr3nTR8/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge none /tmp/LPHPr3nTR8/merge.12.a.bcf /tmp/LPHPr3nTR8/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge none /tmp/LPHPr3nTR8/merge.12.a.bcf /tmp/LPHPr3nTR8/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/LPHPr3nTR8/merge.12.a.vcf.gz /tmp/LPHPr3nTR8/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/LPHPr3nTR8/merge.12.a.vcf.gz /tmp/LPHPr3nTR8/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --merge both /tmp/LPHPr3nTR8/merge.12.a.bcf /tmp/LPHPr3nTR8/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --merge both /tmp/LPHPr3nTR8/merge.12.a.bcf /tmp/LPHPr3nTR8/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.phased.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.phased.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.phased.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.phased.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.phased.1.a.bcf /tmp/LPHPr3nTR8/merge.phased.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.phased.1.a.bcf /tmp/LPHPr3nTR8/merge.phased.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.11.a.vcf.gz /tmp/LPHPr3nTR8/merge.11.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.11.a.vcf.gz /tmp/LPHPr3nTR8/merge.11.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.11.a.bcf /tmp/LPHPr3nTR8/merge.11.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.11.a.bcf /tmp/LPHPr3nTR8/merge.11.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AF:join /tmp/LPHPr3nTR8/merge.join.a.vcf.gz /tmp/LPHPr3nTR8/merge.join.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AF:join /tmp/LPHPr3nTR8/merge.join.a.vcf.gz /tmp/LPHPr3nTR8/merge.join.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AF:join /tmp/LPHPr3nTR8/merge.join.a.bcf /tmp/LPHPr3nTR8/merge.join.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AF:join /tmp/LPHPr3nTR8/merge.join.a.bcf /tmp/LPHPr3nTR8/merge.join.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-single /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-single /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-single /tmp/LPHPr3nTR8/merge.LPL.a.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-single /tmp/LPHPr3nTR8/merge.LPL.a.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 1 /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 1 /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 2 /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 2 /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 3 /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 3 /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 4 /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 4 /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 5 /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/LPHPr3nTR8/merge.LPL.a.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.b.vcf.gz /tmp/LPHPr3nTR8/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -L 5 /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/LPHPr3nTR8/merge.LPL.a.bcf /tmp/LPHPr3nTR8/merge.LPL.b.bcf /tmp/LPHPr3nTR8/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/LPHPr3nTR8/merge.a.vcf.gz /tmp/LPHPr3nTR8/merge.b.vcf.gz /tmp/LPHPr3nTR8/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/LPHPr3nTR8/merge.a.vcf.gz /tmp/LPHPr3nTR8/merge.b.vcf.gz /tmp/LPHPr3nTR8/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/LPHPr3nTR8/merge.a.bcf /tmp/LPHPr3nTR8/merge.b.bcf /tmp/LPHPr3nTR8/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/LPHPr3nTR8/merge.a.bcf /tmp/LPHPr3nTR8/merge.b.bcf /tmp/LPHPr3nTR8/merge.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -Fx /tmp/LPHPr3nTR8/merge.a.vcf.gz /tmp/LPHPr3nTR8/merge.b.vcf.gz /tmp/LPHPr3nTR8/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -Fx /tmp/LPHPr3nTR8/merge.a.vcf.gz /tmp/LPHPr3nTR8/merge.b.vcf.gz /tmp/LPHPr3nTR8/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -Fx /tmp/LPHPr3nTR8/merge.a.bcf /tmp/LPHPr3nTR8/merge.b.bcf /tmp/LPHPr3nTR8/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -Fx /tmp/LPHPr3nTR8/merge.a.bcf /tmp/LPHPr3nTR8/merge.b.bcf /tmp/LPHPr3nTR8/merge.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -0 /tmp/LPHPr3nTR8/merge.a.vcf.gz /tmp/LPHPr3nTR8/merge.b.vcf.gz /tmp/LPHPr3nTR8/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -0 /tmp/LPHPr3nTR8/merge.a.vcf.gz /tmp/LPHPr3nTR8/merge.b.vcf.gz /tmp/LPHPr3nTR8/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -0 /tmp/LPHPr3nTR8/merge.a.bcf /tmp/LPHPr3nTR8/merge.b.bcf /tmp/LPHPr3nTR8/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -0 /tmp/LPHPr3nTR8/merge.a.bcf /tmp/LPHPr3nTR8/merge.b.bcf /tmp/LPHPr3nTR8/merge.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m none /tmp/LPHPr3nTR8/merge.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m none /tmp/LPHPr3nTR8/merge.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m none /tmp/LPHPr3nTR8/merge.2.a.bcf /tmp/LPHPr3nTR8/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m none /tmp/LPHPr3nTR8/merge.2.a.bcf /tmp/LPHPr3nTR8/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m both /tmp/LPHPr3nTR8/merge.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m both /tmp/LPHPr3nTR8/merge.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m both /tmp/LPHPr3nTR8/merge.2.a.bcf /tmp/LPHPr3nTR8/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m both /tmp/LPHPr3nTR8/merge.2.a.bcf /tmp/LPHPr3nTR8/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m all /tmp/LPHPr3nTR8/merge.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m all /tmp/LPHPr3nTR8/merge.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m all /tmp/LPHPr3nTR8/merge.2.a.bcf /tmp/LPHPr3nTR8/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m all /tmp/LPHPr3nTR8/merge.2.a.bcf /tmp/LPHPr3nTR8/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/LPHPr3nTR8/merge.3.a.vcf.gz /tmp/LPHPr3nTR8/merge.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/LPHPr3nTR8/merge.3.a.vcf.gz /tmp/LPHPr3nTR8/merge.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/LPHPr3nTR8/merge.3.a.bcf /tmp/LPHPr3nTR8/merge.3.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/LPHPr3nTR8/merge.3.a.bcf /tmp/LPHPr3nTR8/merge.3.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m id /tmp/LPHPr3nTR8/merge.4.a.vcf.gz /tmp/LPHPr3nTR8/merge.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m id /tmp/LPHPr3nTR8/merge.4.a.vcf.gz /tmp/LPHPr3nTR8/merge.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples -m id /tmp/LPHPr3nTR8/merge.4.a.bcf /tmp/LPHPr3nTR8/merge.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples -m id /tmp/LPHPr3nTR8/merge.4.a.bcf /tmp/LPHPr3nTR8/merge.4.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/gvcf.merge.1.vcf.gz /tmp/LPHPr3nTR8/gvcf.merge.2.vcf.gz /tmp/LPHPr3nTR8/gvcf.merge.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/gvcf.merge.1.vcf.gz /tmp/LPHPr3nTR8/gvcf.merge.2.vcf.gz /tmp/LPHPr3nTR8/gvcf.merge.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/gvcf.merge.1.bcf /tmp/LPHPr3nTR8/gvcf.merge.2.bcf /tmp/LPHPr3nTR8/gvcf.merge.3.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/gvcf.merge.1.bcf /tmp/LPHPr3nTR8/gvcf.merge.2.bcf /tmp/LPHPr3nTR8/gvcf.merge.3.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -m both,* /tmp/LPHPr3nTR8/merge.gvcf.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -m both,* /tmp/LPHPr3nTR8/merge.gvcf.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -m both,** /tmp/LPHPr3nTR8/merge.gvcf.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -m both,** /tmp/LPHPr3nTR8/merge.gvcf.2.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -i SRC:join /tmp/LPHPr3nTR8/merge.gvcf.3.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -i SRC:join /tmp/LPHPr3nTR8/merge.gvcf.3.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.4.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.4.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.4.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.4.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.4.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.5.a.vcf.gz /tmp/LPHPr3nTR8/merge.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.5.a.vcf.gz /tmp/LPHPr3nTR8/merge.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.5.a.bcf /tmp/LPHPr3nTR8/merge.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.5.a.bcf /tmp/LPHPr3nTR8/merge.5.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.6.a.vcf.gz /tmp/LPHPr3nTR8/merge.6.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.6.a.vcf.gz /tmp/LPHPr3nTR8/merge.6.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.6.a.bcf /tmp/LPHPr3nTR8/merge.6.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.6.a.bcf /tmp/LPHPr3nTR8/merge.6.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.7.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.7.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.7.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.7.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.7.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.8.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.8.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.8.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.8.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.8.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/LPHPr3nTR8/merge.7.a.vcf.gz /tmp/LPHPr3nTR8/merge.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/LPHPr3nTR8/merge.7.a.vcf.gz /tmp/LPHPr3nTR8/merge.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --force-samples /tmp/LPHPr3nTR8/merge.7.a.bcf /tmp/LPHPr3nTR8/merge.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --force-samples /tmp/LPHPr3nTR8/merge.7.a.bcf /tmp/LPHPr3nTR8/merge.7.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/LPHPr3nTR8/merge.gvcf.9a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9c.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/LPHPr3nTR8/merge.gvcf.9a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9c.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/LPHPr3nTR8/merge.gvcf.9a.bcf /tmp/LPHPr3nTR8/merge.gvcf.9b.bcf /tmp/LPHPr3nTR8/merge.gvcf.9c.bcf /tmp/LPHPr3nTR8/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/LPHPr3nTR8/merge.gvcf.9a.bcf /tmp/LPHPr3nTR8/merge.gvcf.9b.bcf /tmp/LPHPr3nTR8/merge.gvcf.9c.bcf /tmp/LPHPr3nTR8/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/LPHPr3nTR8/merge.gvcf.9a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9c.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/LPHPr3nTR8/merge.gvcf.9a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9c.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/LPHPr3nTR8/merge.gvcf.9a.bcf /tmp/LPHPr3nTR8/merge.gvcf.9b.bcf /tmp/LPHPr3nTR8/merge.gvcf.9c.bcf /tmp/LPHPr3nTR8/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/LPHPr3nTR8/merge.gvcf.9a.bcf /tmp/LPHPr3nTR8/merge.gvcf.9b.bcf /tmp/LPHPr3nTR8/merge.gvcf.9c.bcf /tmp/LPHPr3nTR8/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/LPHPr3nTR8/merge.gvcf.9a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9c.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9d.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/LPHPr3nTR8/merge.gvcf.9a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9c.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9d.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/LPHPr3nTR8/merge.gvcf.9a.bcf /tmp/LPHPr3nTR8/merge.gvcf.9b.bcf /tmp/LPHPr3nTR8/merge.gvcf.9c.bcf /tmp/LPHPr3nTR8/merge.gvcf.9d.bcf /tmp/LPHPr3nTR8/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/LPHPr3nTR8/merge.gvcf.9a.bcf /tmp/LPHPr3nTR8/merge.gvcf.9b.bcf /tmp/LPHPr3nTR8/merge.gvcf.9c.bcf /tmp/LPHPr3nTR8/merge.gvcf.9d.bcf /tmp/LPHPr3nTR8/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/LPHPr3nTR8/merge.gvcf.9a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9c.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9d.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/LPHPr3nTR8/merge.gvcf.9a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9c.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9d.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/LPHPr3nTR8/merge.gvcf.9a.bcf /tmp/LPHPr3nTR8/merge.gvcf.9b.bcf /tmp/LPHPr3nTR8/merge.gvcf.9c.bcf /tmp/LPHPr3nTR8/merge.gvcf.9d.bcf /tmp/LPHPr3nTR8/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa -r 22:21-23 /tmp/LPHPr3nTR8/merge.gvcf.9a.bcf /tmp/LPHPr3nTR8/merge.gvcf.9b.bcf /tmp/LPHPr3nTR8/merge.gvcf.9c.bcf /tmp/LPHPr3nTR8/merge.gvcf.9d.bcf /tmp/LPHPr3nTR8/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.gvcf.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.gvcf.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.gvcf.10.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.gvcf.10.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/LPHPr3nTR8/merge.gvcf.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/LPHPr3nTR8/merge.gvcf.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/LPHPr3nTR8/merge.gvcf.10.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/LPHPr3nTR8/merge.gvcf.10.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/LPHPr3nTR8/merge.gvcf.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/LPHPr3nTR8/merge.gvcf.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/LPHPr3nTR8/merge.gvcf.10.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa /tmp/LPHPr3nTR8/merge.gvcf.10.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/LPHPr3nTR8/merge.gvcf.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/LPHPr3nTR8/merge.gvcf.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/LPHPr3nTR8/merge.gvcf.10.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.gvcf.10.fa -m none /tmp/LPHPr3nTR8/merge.gvcf.10.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.noidx.a.vcf.gz /tmp/LPHPr3nTR8/merge.noidx.b.vcf.gz /tmp/LPHPr3nTR8/merge.noidx.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.noidx.a.vcf.gz /tmp/LPHPr3nTR8/merge.noidx.b.vcf.gz /tmp/LPHPr3nTR8/merge.noidx.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.noidx.a.bcf /tmp/LPHPr3nTR8/merge.noidx.b.bcf /tmp/LPHPr3nTR8/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.noidx.a.bcf /tmp/LPHPr3nTR8/merge.noidx.b.bcf /tmp/LPHPr3nTR8/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --no-index /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.c.vcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --no-index /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/merge.noidx.c.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --no-index /tmp/LPHPr3nTR8/merge.noidx.a.bcf /tmp/LPHPr3nTR8/merge.noidx.b.bcf /tmp/LPHPr3nTR8/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --no-index /tmp/LPHPr3nTR8/merge.noidx.a.bcf /tmp/LPHPr3nTR8/merge.noidx.b.bcf /tmp/LPHPr3nTR8/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.8.a.vcf.gz /tmp/LPHPr3nTR8/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.8.a.vcf.gz /tmp/LPHPr3nTR8/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.8.a.bcf /tmp/LPHPr3nTR8/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.8.a.bcf /tmp/LPHPr3nTR8/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/LPHPr3nTR8/merge.8.a.vcf.gz /tmp/LPHPr3nTR8/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/LPHPr3nTR8/merge.8.a.vcf.gz /tmp/LPHPr3nTR8/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/LPHPr3nTR8/merge.8.a.bcf /tmp/LPHPr3nTR8/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/LPHPr3nTR8/merge.8.a.bcf /tmp/LPHPr3nTR8/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.9.a.vcf.gz /tmp/LPHPr3nTR8/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.9.a.vcf.gz /tmp/LPHPr3nTR8/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version  /tmp/LPHPr3nTR8/merge.9.a.bcf /tmp/LPHPr3nTR8/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob  /tmp/LPHPr3nTR8/merge.9.a.bcf /tmp/LPHPr3nTR8/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/LPHPr3nTR8/merge.9.a.vcf.gz /tmp/LPHPr3nTR8/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/LPHPr3nTR8/merge.9.a.vcf.gz /tmp/LPHPr3nTR8/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -i AN:sum,AC:sum /tmp/LPHPr3nTR8/merge.9.a.bcf /tmp/LPHPr3nTR8/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/LPHPr3nTR8/merge.9.a.bcf /tmp/LPHPr3nTR8/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/LPHPr3nTR8/merge.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/LPHPr3nTR8/merge.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m none /tmp/LPHPr3nTR8/merge.10.a.bcf /tmp/LPHPr3nTR8/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m none /tmp/LPHPr3nTR8/merge.10.a.bcf /tmp/LPHPr3nTR8/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m both /tmp/LPHPr3nTR8/merge.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m both /tmp/LPHPr3nTR8/merge.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m both /tmp/LPHPr3nTR8/merge.10.a.bcf /tmp/LPHPr3nTR8/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m both /tmp/LPHPr3nTR8/merge.10.a.bcf /tmp/LPHPr3nTR8/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m snp-ins-del /tmp/LPHPr3nTR8/merge.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m snp-ins-del /tmp/LPHPr3nTR8/merge.10.a.vcf.gz /tmp/LPHPr3nTR8/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -m snp-ins-del /tmp/LPHPr3nTR8/merge.10.a.bcf /tmp/LPHPr3nTR8/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob -m snp-ins-del /tmp/LPHPr3nTR8/merge.10.a.bcf /tmp/LPHPr3nTR8/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.mrules.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.mrules.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.mrules.1.a.bcf /tmp/LPHPr3nTR8/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.mrules.1.a.bcf /tmp/LPHPr3nTR8/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/LPHPr3nTR8/merge.mrules.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/LPHPr3nTR8/merge.mrules.1.a.vcf.gz /tmp/LPHPr3nTR8/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/LPHPr3nTR8/merge.mrules.1.a.bcf /tmp/LPHPr3nTR8/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/LPHPr3nTR8/merge.mrules.1.a.bcf /tmp/LPHPr3nTR8/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.5.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.5.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.5.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.5.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - --merge none /tmp/LPHPr3nTR8/merge.gvcf.5.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/LPHPr3nTR8/merge.gvcf.5.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - --merge none /tmp/LPHPr3nTR8/merge.gvcf.5.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/LPHPr3nTR8/merge.gvcf.5.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.11.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.11.b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.11.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.11.a.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.11.b.vcf.gz /tmp/LPHPr3nTR8/merge.gvcf.11.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.11.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.11.b.bcf /tmp/LPHPr3nTR8/merge.gvcf.11.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools merge --no-version -Ob --gvcf - /tmp/LPHPr3nTR8/merge.gvcf.11.a.bcf /tmp/LPHPr3nTR8/merge.gvcf.11.b.bcf /tmp/LPHPr3nTR8/merge.gvcf.11.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' /tmp/LPHPr3nTR8/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1' /tmp/LPHPr3nTR8/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"' /tmp/LPHPr3nTR8/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1' /tmp/LPHPr3nTR8/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]="."' /tmp/LPHPr3nTR8/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]~"\."' /tmp/LPHPr3nTR8/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!="."' /tmp/LPHPr3nTR8/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!~"\."' /tmp/LPHPr3nTR8/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%TAG' -i 'TAG[*]!~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER' /tmp/LPHPr3nTR8/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]' /tmp/LPHPr3nTR8/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]' /tmp/LPHPr3nTR8/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' /tmp/LPHPr3nTR8/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."' /tmp/LPHPr3nTR8/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"' /tmp/LPHPr3nTR8/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)' /tmp/LPHPr3nTR8/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)' /tmp/LPHPr3nTR8/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]' /tmp/LPHPr3nTR8/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]' /tmp/LPHPr3nTR8/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"' /tmp/LPHPr3nTR8/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"' /tmp/LPHPr3nTR8/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"' /tmp/LPHPr3nTR8/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.1.txt' /tmp/LPHPr3nTR8/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.1.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.2.txt' /tmp/LPHPr3nTR8/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.string.2.2.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%RSX\t%VKX\n' /tmp/LPHPr3nTR8/query.variantkey.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.variantkey.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%RSX\t%VKX\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRI\n' -i'XRI[*]>1111' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRI\n' -i'XRI[*]>1111'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XRF\n' -i'XRF[*]=2e6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[2]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XGS\n' -i'XGS[*]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' /tmp/LPHPr3nTR8/view.vectors.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.vectors.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"' /tmp/LPHPr3nTR8/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"' /tmp/LPHPr3nTR8/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"' /tmp/LPHPr3nTR8/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"' /tmp/LPHPr3nTR8/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' /tmp/LPHPr3nTR8/query.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT="."'  -f'%POS %IINT\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT!="."' -f'%POS %IINT\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT!="."' -f'%POS %IINT\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT="."'  -f'%POS %IINT\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n' /tmp/LPHPr3nTR8/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n' /tmp/LPHPr3nTR8/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n' /tmp/LPHPr3nTR8/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n' /tmp/LPHPr3nTR8/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%LINE' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%LINE'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"' /tmp/LPHPr3nTR8/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"' /tmp/LPHPr3nTR8/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"' /tmp/LPHPr3nTR8/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"' /tmp/LPHPr3nTR8/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"' /tmp/LPHPr3nTR8/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/LPHPr3nTR8/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/LPHPr3nTR8/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n' /tmp/LPHPr3nTR8/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"' /tmp/LPHPr3nTR8/query.filter.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2' /tmp/LPHPr3nTR8/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."' /tmp/LPHPr3nTR8/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1' /tmp/LPHPr3nTR8/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"' /tmp/LPHPr3nTR8/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"' /tmp/LPHPr3nTR8/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1' /tmp/LPHPr3nTR8/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12' /tmp/LPHPr3nTR8/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"' /tmp/LPHPr3nTR8/query.filter.4.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.4.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.56.out' /tmp/LPHPr3nTR8/view.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/view.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.56.out'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01' /tmp/LPHPr3nTR8/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01' /tmp/LPHPr3nTR8/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01' /tmp/LPHPr3nTR8/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10' /tmp/LPHPr3nTR8/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210' /tmp/LPHPr3nTR8/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30' /tmp/LPHPr3nTR8/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2' /tmp/LPHPr3nTR8/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2' /tmp/LPHPr3nTR8/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"' /tmp/LPHPr3nTR8/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"' /tmp/LPHPr3nTR8/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."' /tmp/LPHPr3nTR8/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)' /tmp/LPHPr3nTR8/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)' /tmp/LPHPr3nTR8/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)' /tmp/LPHPr3nTR8/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)' /tmp/LPHPr3nTR8/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1' /tmp/LPHPr3nTR8/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1' /tmp/LPHPr3nTR8/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1' /tmp/LPHPr3nTR8/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1' /tmp/LPHPr3nTR8/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0' /tmp/LPHPr3nTR8/query.pbinom.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.pbinom.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904' /tmp/LPHPr3nTR8/query.filter.6.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.6.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6' /tmp/LPHPr3nTR8/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7' /tmp/LPHPr3nTR8/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2' /tmp/LPHPr3nTR8/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75' /tmp/LPHPr3nTR8/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2' /tmp/LPHPr3nTR8/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75' /tmp/LPHPr3nTR8/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2' /tmp/LPHPr3nTR8/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5' /tmp/LPHPr3nTR8/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1' /tmp/LPHPr3nTR8/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1' /tmp/LPHPr3nTR8/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]' /tmp/LPHPr3nTR8/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]' /tmp/LPHPr3nTR8/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5' /tmp/LPHPr3nTR8/query.filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2' /tmp/LPHPr3nTR8/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2' /tmp/LPHPr3nTR8/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n' /tmp/LPHPr3nTR8/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0 /tmp/LPHPr3nTR8/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3 /tmp/LPHPr3nTR8/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/LPHPr3nTR8/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/LPHPr3nTR8/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/LPHPr3nTR8/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt /tmp/LPHPr3nTR8/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt /tmp/LPHPr3nTR8/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt /tmp/LPHPr3nTR8/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID~"s12"' /tmp/LPHPr3nTR8/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID~"s12"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="rs123"' /tmp/LPHPr3nTR8/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="rs123"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="abc"' /tmp/LPHPr3nTR8/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt' /tmp/LPHPr3nTR8/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!="abc"' /tmp/LPHPr3nTR8/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt' /tmp/LPHPr3nTR8/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%FILTER\n' /tmp/LPHPr3nTR8/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%FILTER\n' /tmp/LPHPr3nTR8/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A;B"' -f'%FILTER\n' /tmp/LPHPr3nTR8/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n' /tmp/LPHPr3nTR8/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n' /tmp/LPHPr3nTR8/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n' /tmp/LPHPr3nTR8/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'DP%10==2' -f'[ %DP]\n' /tmp/LPHPr3nTR8/filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'DP%10==2' -f'[ %DP]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n' /tmp/LPHPr3nTR8/filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]' /tmp/LPHPr3nTR8/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n' /tmp/LPHPr3nTR8/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n' /tmp/LPHPr3nTR8/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]' /tmp/LPHPr3nTR8/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n' /tmp/LPHPr3nTR8/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/LPHPr3nTR8/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/LPHPr3nTR8/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2' /tmp/LPHPr3nTR8/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2' /tmp/LPHPr3nTR8/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2'
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s /tmp/LPHPr3nTR8/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.check-ref.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s /tmp/LPHPr3nTR8/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.check-ref.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/LPHPr3nTR8/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/LPHPr3nTR8/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/LPHPr3nTR8/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/LPHPr3nTR8/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/LPHPr3nTR8/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.filter.txt' /tmp/LPHPr3nTR8/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/LPHPr3nTR8/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/LPHPr3nTR8/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c e /tmp/LPHPr3nTR8/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c e /tmp/LPHPr3nTR8/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.breakend.1.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.breakend.1.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -S lex /tmp/LPHPr3nTR8/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -S lex /tmp/LPHPr3nTR8/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/LPHPr3nTR8/norm.join-missing-ploidy.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/LPHPr3nTR8/norm.join-missing-ploidy.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/LPHPr3nTR8/norm.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/LPHPr3nTR8/norm.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version  /tmp/LPHPr3nTR8/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version  /tmp/LPHPr3nTR8/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -cx /tmp/LPHPr3nTR8/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -cx /tmp/LPHPr3nTR8/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/LPHPr3nTR8/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/LPHPr3nTR8/norm.split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/LPHPr3nTR8/norm.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/LPHPr3nTR8/norm.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --force /tmp/LPHPr3nTR8/norm.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --force /tmp/LPHPr3nTR8/norm.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/LPHPr3nTR8/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/LPHPr3nTR8/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --keep-sum AD /tmp/LPHPr3nTR8/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- --keep-sum AD /tmp/LPHPr3nTR8/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/LPHPr3nTR8/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m- /tmp/LPHPr3nTR8/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/LPHPr3nTR8/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/LPHPr3nTR8/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/LPHPr3nTR8/norm.merge.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/LPHPr3nTR8/norm.merge.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/LPHPr3nTR8/norm.merge.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ /tmp/LPHPr3nTR8/norm.merge.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ -s /tmp/LPHPr3nTR8/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m+ -s /tmp/LPHPr3nTR8/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -Nc s /tmp/LPHPr3nTR8/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -Nc s /tmp/LPHPr3nTR8/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version /tmp/LPHPr3nTR8/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version /tmp/LPHPr3nTR8/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/LPHPr3nTR8/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d none /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d indels /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d any /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d any /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d both /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d snps /tmp/LPHPr3nTR8/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/LPHPr3nTR8/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d exact /tmp/LPHPr3nTR8/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/LPHPr3nTR8/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -d all /tmp/LPHPr3nTR8/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/LPHPr3nTR8/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/LPHPr3nTR8/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/LPHPr3nTR8/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.iupac.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/LPHPr3nTR8/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.iupac.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/LPHPr3nTR8/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s --old-rec-tag XX /tmp/LPHPr3nTR8/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/LPHPr3nTR8/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/LPHPr3nTR8/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --force
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --force -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/LPHPr3nTR8/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/LPHPr3nTR8/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -a -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/LPHPr3nTR8/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/LPHPr3nTR8/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . /tmp/LPHPr3nTR8/atomize.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . /tmp/LPHPr3nTR8/atomize.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/LPHPr3nTR8/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/LPHPr3nTR8/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/LPHPr3nTR8/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/LPHPr3nTR8/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/LPHPr3nTR8/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/LPHPr3nTR8/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/LPHPr3nTR8/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/LPHPr3nTR8/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/LPHPr3nTR8/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/LPHPr3nTR8/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/LPHPr3nTR8/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/LPHPr3nTR8/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - --multi-overlaps . /tmp/LPHPr3nTR8/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/LPHPr3nTR8/norm.m-any.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/LPHPr3nTR8/norm.m-any.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/LPHPr3nTR8/norm.phased-split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/LPHPr3nTR8/norm.phased-split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/LPHPr3nTR8/norm.phased-join.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/LPHPr3nTR8/norm.phased-join.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/LPHPr3nTR8/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/LPHPr3nTR8/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/LPHPr3nTR8/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/LPHPr3nTR8/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/LPHPr3nTR8/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI /tmp/LPHPr3nTR8/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.gff /tmp/LPHPr3nTR8/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.gff /tmp/LPHPr3nTR8/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/LPHPr3nTR8/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.atom-split-norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/LPHPr3nTR8/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.atom-split-norm.fa -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/LPHPr3nTR8/norm.string-tags.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m -any /tmp/LPHPr3nTR8/norm.string-tags.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +indels
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +indels -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -i 'type="snp"' /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m - -i 'type="snp"' /tmp/LPHPr3nTR8/norm.split.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/LPHPr3nTR8/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +any /tmp/LPHPr3nTR8/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/LPHPr3nTR8/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools norm --no-version -m +both /tmp/LPHPr3nTR8/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/LPHPr3nTR8/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/LPHPr3nTR8/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/LPHPr3nTR8/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.string.1.txt' /tmp/LPHPr3nTR8/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -HA /tmp/LPHPr3nTR8/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -HAA /tmp/LPHPr3nTR8/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r 1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r 1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r 1:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r 1:1-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r 1:1,1:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r 1:1,1:2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r 1:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r 1:1-1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1} | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1}:1-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1}:1-1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1-1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1-1} | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1-1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1-1}:1-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1-1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1-1}:1-1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1-1}-2
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/weird-chr-names.vcf.gz -r {1:1-1}-2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -aUc1 -C1 -s NA00002 -v snps /tmp/LPHPr3nTR8/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -aUc1 -C1 -s NA00002 -v snps /tmp/LPHPr3nTR8/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -f PASS -Xks NA00003 /tmp/LPHPr3nTR8/view.vcf.gz -r20,Y
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -f PASS -Xks NA00003 /tmp/LPHPr3nTR8/view.vcf.gz -r20,Y | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -xs NA00003 /tmp/LPHPr3nTR8/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -xs NA00003 /tmp/LPHPr3nTR8/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/LPHPr3nTR8/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/LPHPr3nTR8/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -p /tmp/LPHPr3nTR8/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -p /tmp/LPHPr3nTR8/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -P /tmp/LPHPr3nTR8/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -P /tmp/LPHPr3nTR8/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -hm2 -M2 -q0.3 -Q0.7 /tmp/LPHPr3nTR8/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -hm2 -M2 -q0.3 -Q0.7 /tmp/LPHPr3nTR8/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Hu /tmp/LPHPr3nTR8/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -GVsnps /tmp/LPHPr3nTR8/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -GVsnps /tmp/LPHPr3nTR8/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -ne 'INDEL=1 || PV4[0]<0.006' /tmp/LPHPr3nTR8/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -ne 'INDEL=1 || PV4[0]<0.006' /tmp/LPHPr3nTR8/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -s ^NA00003 /tmp/LPHPr3nTR8/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -s ^NA00003 /tmp/LPHPr3nTR8/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version  /tmp/LPHPr3nTR8/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob  /tmp/LPHPr3nTR8/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -G /tmp/LPHPr3nTR8/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -G /tmp/LPHPr3nTR8/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -HG /tmp/LPHPr3nTR8/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -a /tmp/LPHPr3nTR8/many.alleles.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -a /tmp/LPHPr3nTR8/many.alleles.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -asA /tmp/LPHPr3nTR8/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -asA /tmp/LPHPr3nTR8/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -asB /tmp/LPHPr3nTR8/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -asB /tmp/LPHPr3nTR8/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -asA /tmp/LPHPr3nTR8/view.vectors.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -asA /tmp/LPHPr3nTR8/view.vectors.2.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FGS[*:0]="AAAAAA"' /tmp/LPHPr3nTR8/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FGS[*:2]="C"' /tmp/LPHPr3nTR8/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FGS[*:4]="EE"' /tmp/LPHPr3nTR8/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'FMT/FRS[*:1]="BB"' /tmp/LPHPr3nTR8/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i'TXT0="text"' /tmp/LPHPr3nTR8/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.chrs.tab /tmp/LPHPr3nTR8/view.chrs.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.chrs.tab /tmp/LPHPr3nTR8/view.chrs.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -i 'POS>=3062917' /tmp/LPHPr3nTR8/filter.2.vcf.gz 1:3062917-3157410
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -i 'POS>=3062917' /tmp/LPHPr3nTR8/filter.2.vcf.gz 1:3062917-3157410 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r 1:10,1:12,1:10 /tmp/LPHPr3nTR8/idx.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r 1:1172777-1172804,1:1172806-1172808 /tmp/LPHPr3nTR8/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/idx.2.bed /tmp/LPHPr3nTR8/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/idx.3.bed /tmp/LPHPr3nTR8/idx.3.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/idx.4.bed /tmp/LPHPr3nTR8/idx.4.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ht 2 /tmp/LPHPr3nTR8/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ht 3 /tmp/LPHPr3nTR8/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 0 /tmp/LPHPr3nTR8/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 1 /tmp/LPHPr3nTR8/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 2 /tmp/LPHPr3nTR8/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 0 /tmp/LPHPr3nTR8/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 1 /tmp/LPHPr3nTR8/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 2 /tmp/LPHPr3nTR8/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 0 /tmp/LPHPr3nTR8/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 1 /tmp/LPHPr3nTR8/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 2 /tmp/LPHPr3nTR8/overlap.vcf.gz 
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.1.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.1.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.1.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.2.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.2.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.2.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.3.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.3.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.4.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.4.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.4.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.5.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.5.vcf     | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view64bit.5.vcf -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -C5:nonmajor /tmp/LPHPr3nTR8/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -c6:nonmajor /tmp/LPHPr3nTR8/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -q0.3:major /tmp/LPHPr3nTR8/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i 'Gene.refGene=="RAD21L1"' /tmp/LPHPr3nTR8/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i 'Gene.refGene~"NOD"' /tmp/LPHPr3nTR8/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -i 'LJB2_MutationTaster=="0.291000"' /tmp/LPHPr3nTR8/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -H -a /tmp/LPHPr3nTR8/view-a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt /tmp/LPHPr3nTR8/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt /tmp/LPHPr3nTR8/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt.gz /tmp/LPHPr3nTR8/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.sites.txt.gz /tmp/LPHPr3nTR8/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 5 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 22 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 23 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -n 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -n 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -n 5 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -h 5 -n 5 < /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s0 /tmp/LPHPr3nTR8/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ob /tmp/LPHPr3nTR8/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s0
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s1 /tmp/LPHPr3nTR8/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ob /tmp/LPHPr3nTR8/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s1
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s2 -h2 /tmp/LPHPr3nTR8/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version -Ob /tmp/LPHPr3nTR8/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools head -s2 -h2
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s sample1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s sample1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s sample3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/samples.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-ploidy.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mg0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mg0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.1.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mA -C alleles -T /tmp/LPHPr3nTR8/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.cals.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ped /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.2.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call-G.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/view.filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'ALT="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'ALT="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="A"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="A"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="RR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="RR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="RA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="RA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="AR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="AR"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="AA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="AA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="aA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="aA"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="HET"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="HET"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.7.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.7.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools filter -Ob --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -m 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -Ob -m 0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -m 1000 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools sort -Ob -m 1000 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/sort.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/regions.tab /tmp/LPHPr3nTR8/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/regions.tab
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/regions.tab /tmp/LPHPr3nTR8/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/LPHPr3nTR8/regions.tab.gz /tmp/LPHPr3nTR8/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/LPHPr3nTR8/regions.tab.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/LPHPr3nTR8/regions.tab.gz /tmp/LPHPr3nTR8/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/LPHPr3nTR8/regions.bed /tmp/LPHPr3nTR8/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/LPHPr3nTR8/regions.bed
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/LPHPr3nTR8/regions.bed /tmp/LPHPr3nTR8/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/LPHPr3nTR8/regions.bed.gz /tmp/LPHPr3nTR8/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/LPHPr3nTR8/regions.bed.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/LPHPr3nTR8/regions.bed.gz /tmp/LPHPr3nTR8/regions.vcf.gz
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/LPHPr3nTR8/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/LPHPr3nTR8/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/LPHPr3nTR8/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/LPHPr3nTR8/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x FORMAT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x FORMAT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots4.vcf.gz  -c +INFO /tmp/LPHPr3nTR8/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots4.vcf.gz  -c +INFO /tmp/LPHPr3nTR8/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots11.vcf.gz  -c FMT /tmp/LPHPr3nTR8/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots11.vcf.gz  -c FMT /tmp/LPHPr3nTR8/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/LPHPr3nTR8/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -x FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -x FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/LPHPr3nTR8/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate20.src.vcf.gz  -c  FMT/GT /tmp/LPHPr3nTR8/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate20.src.vcf.gz  -c  FMT/GT /tmp/LPHPr3nTR8/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate20.src.vcf.gz  -c +FMT/GT /tmp/LPHPr3nTR8/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate20.src.vcf.gz  -c +FMT/GT /tmp/LPHPr3nTR8/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate20.src.vcf.gz  -c -FMT/GT /tmp/LPHPr3nTR8/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate20.src.vcf.gz  -c -FMT/GT /tmp/LPHPr3nTR8/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   --rename-annots /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   --rename-annots /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.txt /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/LPHPr3nTR8/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/LPHPr3nTR8/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate24.src.vcf.gz  -c XX /tmp/LPHPr3nTR8/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate24.src.vcf.gz  -c XX /tmp/LPHPr3nTR8/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots.id.vcf.gz  -c ALT /tmp/LPHPr3nTR8/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots.id.vcf.gz  -c ALT /tmp/LPHPr3nTR8/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots.id.vcf.gz  -c +ALT /tmp/LPHPr3nTR8/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots.id.vcf.gz  -c +ALT /tmp/LPHPr3nTR8/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/LPHPr3nTR8/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/LPHPr3nTR8/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/LPHPr3nTR8/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/LPHPr3nTR8/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate   -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob   -m XXX /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -a /tmp/LPHPr3nTR8/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate -Ob -a /tmp/LPHPr3nTR8/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/LPHPr3nTR8/checkploidy.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/LPHPr3nTR8/checkploidy.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/LPHPr3nTR8/checkploidy.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/LPHPr3nTR8/checkploidy.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/LPHPr3nTR8/checkploidy.2.vcf.gz -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +check-ploidy --no-version /tmp/LPHPr3nTR8/checkploidy.2.bcf -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +missing2ref --no-version /tmp/LPHPr3nTR8/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +missing2ref --no-version /tmp/LPHPr3nTR8/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/plugin1.vcf.gz -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/plugin1.bcf -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.vcf.gz -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.bcf -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.2.vcf.gz -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.2.bcf -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.vcf.gz -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.bcf -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.vcf.gz -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.bcf -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.vcf.gz -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.bcf -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.vcf.gz -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.bcf -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.vcf.gz -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.bcf -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.vcf.gz -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.bcf -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.vcf.gz -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.3.bcf -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.4.bcf -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.4.bcf -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.5.vcf.gz -- -t a -n X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.5.bcf -- -t a -n X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.5.vcf.gz -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.5.bcf -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.6.vcf.gz -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.6.bcf -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.6.vcf.gz -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.6.bcf -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.6.vcf.gz -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +setGT --no-version /tmp/LPHPr3nTR8/setGT.6.bcf -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-AN-AC --no-version /tmp/LPHPr3nTR8/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-AN-AC --no-version /tmp/LPHPr3nTR8/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/LPHPr3nTR8/dosage.vcf.gz -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/LPHPr3nTR8/dosage.bcf -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/LPHPr3nTR8/dosage.vcf.gz -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/LPHPr3nTR8/dosage.bcf -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/LPHPr3nTR8/dosage.vcf.gz -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +dosage /tmp/LPHPr3nTR8/dosage.bcf -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixploidy --no-version /tmp/LPHPr3nTR8/fixploidy.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixploidy --no-version /tmp/LPHPr3nTR8/fixploidy.bcf -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/LPHPr3nTR8/view.PL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/LPHPr3nTR8/view.PL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/LPHPr3nTR8/view.GL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +guess-ploidy /tmp/LPHPr3nTR8/view.GL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/view.GL.vcf.gz -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/view.GL.bcf -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/view.GL.vcf.gz -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/view.GL.bcf -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/view.GP.vcf.gz -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/view.GP.bcf -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/tag2tag.LPL.1.bcf -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/tag2tag.LPL.1.bcf -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +tag2tag --no-version /tmp/LPHPr3nTR8/tag2tag.LPL.1.bcf -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +add-variantkey /tmp/LPHPr3nTR8/query.variantkey.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +add-variantkey /tmp/LPHPr3nTR8/query.variantkey.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variantkey-hex /tmp/LPHPr3nTR8/query.variantkey.vcf.gz test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variantkey-hex /tmp/LPHPr3nTR8/query.variantkey.bcf test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +allele-length /tmp/LPHPr3nTR8/query.nucleotide.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +allele-length /tmp/LPHPr3nTR8/query.nucleotide.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/query.func.1.vcf.gz -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/query.func.1.bcf -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/merge.a.vcf.gz -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/merge.a.bcf -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/view.vcf.gz -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/view.bcf -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/view.vcf.gz -- -t AC -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/view.bcf -- -t AC -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/view.vcf.gz -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/view.bcf -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/many-alts.vcf.gz -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/many-alts.bcf -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-hemi.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-hemi.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-hemi.vcf.gz -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-hemi.bcf -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-hwe.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-hwe.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-hwe.vcf.gz -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-hwe.bcf -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-rw.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-rw.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AN0.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AN0.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-VAF.vcf.gz -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-VAF.bcf -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AD.vcf.gz -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AD.bcf -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AD.vcf.gz -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AD.bcf -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AD.vcf.gz -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-tags --no-version /tmp/LPHPr3nTR8/fill-tags-AD.bcf -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.vcf.gz -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.bcf -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.vcf.gz -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.bcf -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.vcf.gz -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.bcf -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.vcf.gz -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.bcf -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.vcf.gz -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.bcf -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.vcf.gz -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.bcf -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.vcf.gz -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTisec /tmp/LPHPr3nTR8/view.bcf -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-switch-rate /tmp/LPHPr3nTR8/trio.vcf.gz -- -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-switch-rate /tmp/LPHPr3nTR8/trio.bcf -- -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/LPHPr3nTR8/trio-stats.vcf.gz -a 1 -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/LPHPr3nTR8/trio-stats.bcf -a 1 -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/LPHPr3nTR8/trio-stats.vcf.gz -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-stats /tmp/LPHPr3nTR8/trio-stats.bcf -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +smpl-stats /tmp/LPHPr3nTR8/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +smpl-stats /tmp/LPHPr3nTR8/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/LPHPr3nTR8/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/LPHPr3nTR8/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/LPHPr3nTR8/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/LPHPr3nTR8/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/LPHPr3nTR8/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +indel-stats /tmp/LPHPr3nTR8/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/LPHPr3nTR8/ad-bias.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/LPHPr3nTR8/ad-bias.bcf -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/LPHPr3nTR8/ad-bias.2.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/LPHPr3nTR8/ad-bias.2.bcf -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/LPHPr3nTR8/ad-bias.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/LPHPr3nTR8/ad-bias.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/LPHPr3nTR8/ad-bias.2.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +ad-bias /tmp/LPHPr3nTR8/ad-bias.2.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +af-dist /tmp/LPHPr3nTR8/af-dist.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +af-dist /tmp/LPHPr3nTR8/af-dist.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -i /tmp/LPHPr3nTR8/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -i /tmp/LPHPr3nTR8/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.3.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.3.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fixref /tmp/LPHPr3nTR8/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/LPHPr3nTR8/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/LPHPr3nTR8/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/LPHPr3nTR8/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/LPHPr3nTR8/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/LPHPr3nTR8/ref.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +fill-from-fasta /tmp/LPHPr3nTR8/ref.bcf -- -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/LPHPr3nTR8/view.vcf.gz -- -s NA00001 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/LPHPr3nTR8/view.bcf -- -s NA00001 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/LPHPr3nTR8/view.vcf.gz -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/LPHPr3nTR8/view.bcf -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/LPHPr3nTR8/view.vcf.gz -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +GTsubset --no-version /tmp/LPHPr3nTR8/view.bcf -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.vcf.gz -p child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.bcf -p child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.vcf.gz -p child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.bcf -p child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.vcf.gz -p child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.bcf -p child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.vcf.gz -p child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.bcf -p child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.vcf.gz -p child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.bcf -p child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.vcf.gz -p child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +mendelian2 /tmp/LPHPr3nTR8/mendelian.bcf -p child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/LPHPr3nTR8/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/LPHPr3nTR8/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/LPHPr3nTR8/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/LPHPr3nTR8/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/LPHPr3nTR8/contrast.vcf.gz -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/LPHPr3nTR8/contrast.bcf -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/LPHPr3nTR8/contrast.1.vcf.gz -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/LPHPr3nTR8/contrast.1.bcf -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/LPHPr3nTR8/contrast.1.vcf.gz -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +contrast /tmp/LPHPr3nTR8/contrast.1.bcf -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.1.vcf.gz -p proband,father,mother --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.1.bcf -p proband,father,mother --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.2.vcf.gz -p proband,father,mother --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.2.bcf -p proband,father,mother --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother           | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.4.bcf -p proband,father,mother           | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.4.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.5.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.5.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.6.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.6.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.7.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother        --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.7.bcf -p proband,father,mother        --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.8.vcf.gz -p proband,father,mother  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.8.bcf -p proband,father,mother  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.9.vcf.gz -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.9.bcf -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.9.vcf.gz -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.9.bcf -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.10.vcf.gz -p proband,father,mother --with-pAD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.10.bcf -p proband,father,mother --with-pAD | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother --strictly-novel | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +trio-dnm2 /tmp/LPHPr3nTR8/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother --strictly-novel | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/LPHPr3nTR8/gvcfz.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/LPHPr3nTR8/gvcfz.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/LPHPr3nTR8/gvcfz.vcf.gz -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/LPHPr3nTR8/gvcfz.bcf -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/LPHPr3nTR8/gvcfz.2.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +gvcfz /tmp/LPHPr3nTR8/gvcfz.2.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.vcf.gz -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.bcf -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.vcf.gz -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.bcf -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.vcf.gz -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.bcf -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.vcf.gz -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.bcf -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.vcf.gz -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.bcf -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.vcf.gz -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.1.bcf -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.2.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.2.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +remove-overlaps /tmp/LPHPr3nTR8/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.2.bcf -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.2.bcf -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.3.vcf.gz -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.3.bcf -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.3.vcf.gz -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.3.bcf -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.3.vcf.gz -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.3.bcf -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.5.vcf.gz -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.5.bcf -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.5.vcf.gz -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.5.bcf -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.6.vcf.gz -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.6.bcf -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.6.vcf.gz -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.6.bcf -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.6.vcf.gz -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.6.bcf -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.7.vcf.gz --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.7.bcf --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.8.vcf.gz -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.8.bcf -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.8.vcf.gz         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.8.bcf         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.8.vcf.gz -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.8.bcf -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.8.vcf.gz         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.8.bcf         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.9.vcf.gz -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.9.bcf -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.9.vcf.gz -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.9.bcf -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.10.vcf.gz -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.10.bcf -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.10.vcf.gz -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.10.bcf -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.10.vcf.gz        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.10.bcf        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.vcf.gz -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.bcf -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.vcf.gz -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.bcf -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.vcf.gz -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.bcf -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.vcf.gz -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.select-tr-expr.bcf -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.filter-missing-bt2098.vcf.gz -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.filter-missing-bt2098.bcf -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.filter-missing-bt2098.vcf.gz -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split-vep /tmp/LPHPr3nTR8/split-vep.filter-missing-bt2098.bcf -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/LPHPr3nTR8/parental-origin.vcf.gz -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/LPHPr3nTR8/parental-origin.bcf -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/LPHPr3nTR8/parental-origin.vcf.gz -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/LPHPr3nTR8/parental-origin.bcf -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/LPHPr3nTR8/parental-origin.vcf.gz -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/LPHPr3nTR8/parental-origin.bcf -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/LPHPr3nTR8/parental-origin.vcf.gz -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/LPHPr3nTR8/parental-origin.bcf -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/LPHPr3nTR8/parental-origin.vcf.gz -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +parental-origin /tmp/LPHPr3nTR8/parental-origin.bcf -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/LPHPr3nTR8/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/LPHPr3nTR8/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/LPHPr3nTR8/prune.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 1 -a r2,LD,HD /tmp/LPHPr3nTR8/prune.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/LPHPr3nTR8/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/LPHPr3nTR8/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/LPHPr3nTR8/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/LPHPr3nTR8/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/LPHPr3nTR8/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/LPHPr3nTR8/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/LPHPr3nTR8/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/LPHPr3nTR8/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N 1st /tmp/LPHPr3nTR8/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N 1st /tmp/LPHPr3nTR8/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/LPHPr3nTR8/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/LPHPr3nTR8/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/LPHPr3nTR8/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/LPHPr3nTR8/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/LPHPr3nTR8/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/LPHPr3nTR8/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/LPHPr3nTR8/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/LPHPr3nTR8/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance /tmp/LPHPr3nTR8/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance /tmp/LPHPr3nTR8/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d nearest /tmp/LPHPr3nTR8/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d nearest /tmp/LPHPr3nTR8/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d fwd /tmp/LPHPr3nTR8/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d fwd /tmp/LPHPr3nTR8/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d rev /tmp/LPHPr3nTR8/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d rev /tmp/LPHPr3nTR8/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d both /tmp/LPHPr3nTR8/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +variant-distance -d both /tmp/LPHPr3nTR8/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_plugin_vrfs:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vrfs -a /tmp/LPHPr3nTR8/mpileup.bam.list -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/vrfs.sites.txt | sort
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/LPHPr3nTR8/split.1.1   && cd /tmp/LPHPr3nTR8/split.1.1  && for f in A1.vcf A2.vcf A3.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/LPHPr3nTR8/split.1.2 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.2.txt  && cd /tmp/LPHPr3nTR8/split.1.2  && for f in A.vcf B.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/LPHPr3nTR8/split.1.3 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.3.txt  && cd /tmp/LPHPr3nTR8/split.1.3  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/LPHPr3nTR8/split.1.4 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.3.txt -i 'GT[0]="alt"'  && cd /tmp/LPHPr3nTR8/split.1.4  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/LPHPr3nTR8/split.1.5 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.3.txt -i 'GT="alt"'  && cd /tmp/LPHPr3nTR8/split.1.5  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/LPHPr3nTR8/split.1.6 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.smpl.1.4.txt -i 'GT="alt"'  && cd /tmp/LPHPr3nTR8/split.1.6  && for f in file1.vcf file2.vcf file3.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.1.vcf -o /tmp/LPHPr3nTR8/split.1.7 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.grp.1.1.txt  && cd /tmp/LPHPr3nTR8/split.1.7  && for f in A.vcf A1.vcf A2.vcf B.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +split /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/split.2.vcf -o /tmp/LPHPr3nTR8/split.2.1   && cd /tmp/LPHPr3nTR8/split.2.1  && for f in A1_A1-1.vcf A1_A1-2.vcf A1_A1.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H $f; done
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +scatter /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/scatter.1.vcf -o /tmp/LPHPr3nTR8/scatter.1.1 -n 3 && cd /tmp/LPHPr3nTR8/scatter.1.1 && cat 0.vcf 1.vcf 2.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +scatter /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/scatter.1.vcf -o /tmp/LPHPr3nTR8/scatter.1.2 -s 21,22 && cd /tmp/LPHPr3nTR8/scatter.1.2 && cat 21.vcf 22.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +scatter /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/scatter.1.vcf -o /tmp/LPHPr3nTR8/scatter.1.3 -s 21,22 -x X && cd /tmp/LPHPr3nTR8/scatter.1.3 && cat 21.vcf 22.vcf X.vcf | grep -v ^##
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G  /tmp/LPHPr3nTR8/concat.1.a.vcf.gz /tmp/LPHPr3nTR8/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -G  /tmp/LPHPr3nTR8/concat.1.a.vcf.gz /tmp/LPHPr3nTR8/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G  /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version   /tmp/LPHPr3nTR8/concat.1.a.vcf.gz /tmp/LPHPr3nTR8/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob   /tmp/LPHPr3nTR8/concat.1.a.vcf.gz /tmp/LPHPr3nTR8/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version   /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version   /tmp/LPHPr3nTR8/concat.1.a.bcf /tmp/LPHPr3nTR8/concat.1.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob   /tmp/LPHPr3nTR8/concat.1.a.bcf /tmp/LPHPr3nTR8/concat.1.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -a  /tmp/LPHPr3nTR8/concat.2.a.vcf.gz /tmp/LPHPr3nTR8/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -a  /tmp/LPHPr3nTR8/concat.2.a.vcf.gz /tmp/LPHPr3nTR8/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -a  /tmp/LPHPr3nTR8/concat.2.a.bcf /tmp/LPHPr3nTR8/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -a  /tmp/LPHPr3nTR8/concat.2.a.bcf /tmp/LPHPr3nTR8/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -aD  /tmp/LPHPr3nTR8/concat.2.a.vcf.gz /tmp/LPHPr3nTR8/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -aD  /tmp/LPHPr3nTR8/concat.2.a.vcf.gz /tmp/LPHPr3nTR8/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -aD  /tmp/LPHPr3nTR8/concat.2.a.bcf /tmp/LPHPr3nTR8/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -aD  /tmp/LPHPr3nTR8/concat.2.a.bcf /tmp/LPHPr3nTR8/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/LPHPr3nTR8/concat.3.a.vcf.gz /tmp/LPHPr3nTR8/concat.3.b.vcf.gz /tmp/LPHPr3nTR8/concat.3.0.vcf.gz /tmp/LPHPr3nTR8/concat.3.c.vcf.gz /tmp/LPHPr3nTR8/concat.3.d.vcf.gz /tmp/LPHPr3nTR8/concat.3.e.vcf.gz /tmp/LPHPr3nTR8/concat.3.f.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/LPHPr3nTR8/concat.3.a.vcf.gz /tmp/LPHPr3nTR8/concat.3.b.vcf.gz /tmp/LPHPr3nTR8/concat.3.0.vcf.gz /tmp/LPHPr3nTR8/concat.3.c.vcf.gz /tmp/LPHPr3nTR8/concat.3.d.vcf.gz /tmp/LPHPr3nTR8/concat.3.e.vcf.gz /tmp/LPHPr3nTR8/concat.3.f.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/LPHPr3nTR8/concat.3.a.bcf /tmp/LPHPr3nTR8/concat.3.b.bcf /tmp/LPHPr3nTR8/concat.3.0.bcf /tmp/LPHPr3nTR8/concat.3.c.bcf /tmp/LPHPr3nTR8/concat.3.d.bcf /tmp/LPHPr3nTR8/concat.3.e.bcf /tmp/LPHPr3nTR8/concat.3.f.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/LPHPr3nTR8/concat.3.a.bcf /tmp/LPHPr3nTR8/concat.3.b.bcf /tmp/LPHPr3nTR8/concat.3.0.bcf /tmp/LPHPr3nTR8/concat.3.c.bcf /tmp/LPHPr3nTR8/concat.3.d.bcf /tmp/LPHPr3nTR8/concat.3.e.bcf /tmp/LPHPr3nTR8/concat.3.f.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
Random seed for test_naive_concat: 2087763851
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --naive-force /tmp/LPHPr3nTR8/naive_concat.0.bcf /tmp/LPHPr3nTR8/naive_concat.1.bcf /tmp/LPHPr3nTR8/naive_concat.2.bcf /tmp/LPHPr3nTR8/naive_concat.3.bcf /tmp/LPHPr3nTR8/naive_concat.4.bcf /tmp/LPHPr3nTR8/naive_concat.5.bcf /tmp/LPHPr3nTR8/naive_concat.6.bcf /tmp/LPHPr3nTR8/naive_concat.7.bcf /tmp/LPHPr3nTR8/naive_concat.8.bcf /tmp/LPHPr3nTR8/naive_concat.9.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --naive /tmp/LPHPr3nTR8/naive_concat.0.vcf.gz /tmp/LPHPr3nTR8/naive_concat.1.vcf.gz /tmp/LPHPr3nTR8/naive_concat.2.vcf.gz /tmp/LPHPr3nTR8/naive_concat.3.vcf.gz /tmp/LPHPr3nTR8/naive_concat.4.vcf.gz /tmp/LPHPr3nTR8/naive_concat.5.vcf.gz /tmp/LPHPr3nTR8/naive_concat.6.vcf.gz /tmp/LPHPr3nTR8/naive_concat.7.vcf.gz /tmp/LPHPr3nTR8/naive_concat.8.vcf.gz /tmp/LPHPr3nTR8/naive_concat.9.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -H
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l  /tmp/LPHPr3nTR8/concat.4.a.vcf.gz /tmp/LPHPr3nTR8/concat.4.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l  /tmp/LPHPr3nTR8/concat.4.a.vcf.gz /tmp/LPHPr3nTR8/concat.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l  /tmp/LPHPr3nTR8/concat.4.a.bcf /tmp/LPHPr3nTR8/concat.4.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l  /tmp/LPHPr3nTR8/concat.4.a.bcf /tmp/LPHPr3nTR8/concat.4.b.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/LPHPr3nTR8/concat.5.a.vcf.gz /tmp/LPHPr3nTR8/concat.5.b.vcf.gz /tmp/LPHPr3nTR8/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/LPHPr3nTR8/concat.5.a.vcf.gz /tmp/LPHPr3nTR8/concat.5.b.vcf.gz /tmp/LPHPr3nTR8/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-warn  /tmp/LPHPr3nTR8/concat.5.a.bcf /tmp/LPHPr3nTR8/concat.5.b.bcf /tmp/LPHPr3nTR8/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-warn  /tmp/LPHPr3nTR8/concat.5.a.bcf /tmp/LPHPr3nTR8/concat.5.b.bcf /tmp/LPHPr3nTR8/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -l --ligate-force  /tmp/LPHPr3nTR8/concat.5.a.bcf /tmp/LPHPr3nTR8/concat.5.b.bcf /tmp/LPHPr3nTR8/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -l --ligate-force  /tmp/LPHPr3nTR8/concat.5.a.bcf /tmp/LPHPr3nTR8/concat.5.b.bcf /tmp/LPHPr3nTR8/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G -a -D  /tmp/LPHPr3nTR8/concat.5.a.vcf.gz /tmp/LPHPr3nTR8/concat.5.b.vcf.gz /tmp/LPHPr3nTR8/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -G -a -D  /tmp/LPHPr3nTR8/concat.5.a.vcf.gz /tmp/LPHPr3nTR8/concat.5.b.vcf.gz /tmp/LPHPr3nTR8/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat --no-version -G -a -D  /tmp/LPHPr3nTR8/concat.5.a.bcf /tmp/LPHPr3nTR8/concat.5.b.bcf /tmp/LPHPr3nTR8/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools concat -Ob -G -a -D  /tmp/LPHPr3nTR8/concat.5.a.bcf /tmp/LPHPr3nTR8/concat.5.b.bcf /tmp/LPHPr3nTR8/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -N /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -s /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/empty.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/empty.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr /tmp/LPHPr3nTR8/empty.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/empty.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr /tmp/LPHPr3nTR8/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/LPHPr3nTR8/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/LPHPr3nTR8/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/LPHPr3nTR8/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/LPHPr3nTR8/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -h /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.fai /tmp/LPHPr3nTR8/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.fai /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.fai /tmp/LPHPr3nTR8/reheader.3.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools reheader -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/reheader.3.fai /tmp/LPHPr3nTR8/reheader.3.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/LPHPr3nTR8/rename.map -Ov /tmp/LPHPr3nTR8/annotate.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/LPHPr3nTR8/rename.map -Ob /tmp/LPHPr3nTR8/annotate.bcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/LPHPr3nTR8/rename.map -Ov /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools annotate --rename-chrs /tmp/LPHPr3nTR8/rename.map -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids --3N6 /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --tag PL /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --tag PL /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids /tmp/LPHPr3nTR8/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --vcf-ids /tmp/LPHPr3nTR8/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6 /tmp/LPHPr3nTR8/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6 /tmp/LPHPr3nTR8/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6 --vcf-ids /tmp/LPHPr3nTR8/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g -,. --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6 --vcf-ids /tmp/LPHPr3nTR8/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/check.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -g .,- --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h -,.,. /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,. /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,. --vcf-ids /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,-,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,.,- /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -h .,.,-
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -H /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -H /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hls.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --haplegendsample -,.,. /tmp/LPHPr3nTR8/convert.hap-missing.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.hap-missing.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --haplegendsample -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,. /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,. --vcf-ids /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample .,- /tmp/LPHPr3nTR8/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/LPHPr3nTR8/convert.gvcf.vcf.gz
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa /tmp/LPHPr3nTR8/convert.gvcf.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view --no-version
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view -Ob /tmp/LPHPr3nTR8/convert.gvcf.vcf.gz | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gvcf.fa | grep -v ^##bcftools
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.23andme
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -Ou  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.23andme | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert --no-version  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.tsv
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools convert -Ou  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/convert.tsv | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.gvcf-missing.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.gvcf-missing.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.beyond.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.beyond.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab -c /tmp/LPHPr3nTR8/consensus.1.chain.new >/dev/null; cat /tmp/LPHPr3nTR8/consensus.1.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab -c /tmp/LPHPr3nTR8/consensus.2.chain.new >/dev/null; cat /tmp/LPHPr3nTR8/consensus.2.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.tab -c /tmp/LPHPr3nTR8/consensus.3.chain.new >/dev/null; cat /tmp/LPHPr3nTR8/consensus.3.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H 1  -c /tmp/LPHPr3nTR8/consensus.4.chain.new >/dev/null; cat /tmp/LPHPr3nTR8/consensus.4.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/empty.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/empty.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus4.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus4.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus5.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus5.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus6.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus6.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.13.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.13.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.14.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.14.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.15.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.15.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.17.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.17.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.18.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.18.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.19.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.19.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.21.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.21.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools consensus /tmp/LPHPr3nTR8/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/consensus.22.fa --regions-overlap 2  
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/iupac.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/LPHPr3nTR8/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/LPHPr3nTR8/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/LPHPr3nTR8/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/LPHPr3nTR8/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/LPHPr3nTR8/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/LPHPr3nTR8/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -b /tmp/LPHPr3nTR8/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob -b /tmp/LPHPr3nTR8/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.cram | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.1.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.fa /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.fa -Ob /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/mpileup/annot-NMBZ.3.2.bam | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.gff3 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.chr.gff3 --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.gff --ncsq 64 /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names -,-,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names -,-,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names -,chr,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names chr,chr,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.fa --unify-chr-names chr,-,chr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names chr,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa --unify-chr-names chr,-,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.nchr.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.ychr.gff --unify-chr-names Chromosome,chr,- /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq.yychr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000593942/ENST00000593942.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000593942/ENST00000593942.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000593942/last-codon-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000528237/ENST00000528237.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000528237/ENST00000528237.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000528237/retained-stop-incomplete-cds.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000422159 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000422159.fa -g ENST00000422159.gff multiallelic.vcf  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000422159.fa -g short.gff multiallelic.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000390520/ENST00000390520.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000390520/ENST00000390520.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000390520/deletion-overlap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f EMN908947.fa -g ribosomal-slippage.gff ribosomal-slippage.vcf --force | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f EMN908947.fa -g simple.gff simple.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000379416 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.del-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-del.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-ins.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff single.vcf                 | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000301246/ENST00000301246.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000301246/ENST00000301246.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000301246/15bp-insert.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414-ENST00000521270/valgrind.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000571540/ENST00000571540.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000571540/ENST00000571540.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000571540/nmd.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000285021/ENST00000285021.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000285021/ENST00000285021.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000285021/stop-gained-inframe-indel.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000357367/ENST00000357367.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000357367/ENST00000357367.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000357367/stop-retained.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000230048/ENST00000230048.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000230048/ENST00000230048.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000230048/start-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 0 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 1 | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2/ENST00000368801.2.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2/ENST00000368801.2.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801.2/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414/ENST00000518414.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414/ENST00000518414.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000518414/incorrect-inframe-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000382647/ENST00000382647.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000382647/ENST00000382647.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000382647/synon-splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a -Ot | grep -v ^#
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000400151/ENST00000400151.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000400151/ENST00000400151.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000400151/long-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000580206 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff single.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENST00000580206.fa -g short.gff single.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000519442/ENST00000519442.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000519442/ENST00000519442.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000519442/synon-splice-region-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420190/ENST00000420190.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420190/ENST00000420190.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420190/abort-in-csq-push.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000557788/ENST00000557788.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000557788/ENST00000557788.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000557788/long-overlap-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0003/EDUMMY0003.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0003/EDUMMY0003.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0003/long-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000133836 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000133836.fa -g ENSMUST00000133836.gff filter-problem.vcf -i 'FILTER="PASS"' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000436063/ENST00000436063.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000436063/ENST00000436063.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000436063/insert-before-utr.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000375992/ENST00000375992.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000375992/ENST00000375992.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000375992/incorrect-synon-del-not-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249.2/ENST00000318249.2.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249.2/ENST00000318249.2.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249.2/synonymous-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25500' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25496' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25105' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0002/EDUMMY0002.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0002/EDUMMY0002.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/EDUMMY0002/boundaries.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000269081/ENST00000269081.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000269081/ENST00000269081.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000269081/stop-gained-not-inframe-insertion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000271583/ENST00000271583.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000271583/ENST00000271583.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000271583/splice-acceptor.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000256452/ENST00000256452.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000256452/ENST00000256452.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000256452/intron.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSCAFT00000047742/test.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573035-bt2212/complex-event.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000227471/ENST00000227471.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000227471/ENST00000227471.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000227471/insert-splice-vs-frameshift.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000624631/ENST00000624631.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000624631/ENST00000624631.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000624631/ambiguous.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -b -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -B 5 -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -lb -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009/ENST00000410009.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009/ENST00000410009.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000410009/frameshift.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000360372/ENST00000360372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000360372/ENST00000360372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000360372/mnp.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000409523/ENST00000409523.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000409523/ENST00000409523.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000409523/long-overlapping-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/start-lost-del.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000545279/ENST00000545279.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000545279/ENST00000545279.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000545279/splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/start-stop-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000420670/segfault.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000381157/ENST00000381157.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000381157/ENST00000381157.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000381157/haploid-diploid.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520868/ENST00000520868.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520868/ENST00000520868.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000520868/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801/ENST00000368801.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801/ENST00000368801.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000368801/compound-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000448695/ENST00000448695.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000448695/ENST00000448695.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000448695/syn-and-splice-reg.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSG00000173376/ENSG00000173376.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSG00000173376/ENSG00000173376.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENSG00000173376/synon.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000413103/ENST00000413103.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000413103/ENST00000413103.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000413103/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000000000 && /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -p a -f ENST00000000000.fa -g ENST00000000000.gff upstream-stop.vcf  | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'[%POS\t%REF\t%ALT\t%SAMPLE\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools csq -f /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000263103-INS/ENST00000263103-INS.fa -g /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000263103-INS/ENST00000263103-INS.gff /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/ENST00000263103-INS/insertions.vcf | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz -Or -G30 --AF-dflt 0.4| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.tab.gz| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.tab.gz --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref --include-noalt| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools roh /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --include-noalt| grep -v ^#
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck --keep-refs /tmp/LPHPr3nTR8/gtcheck.gvcf.a.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck --keep-refs /tmp/LPHPr3nTR8/gtcheck.gvcf.b.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/LPHPr3nTR8/gtcheck.gvcf.a.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/LPHPr3nTR8/gtcheck.gvcf.b.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 --no-HWE-prob /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,GT /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,PL /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,GT /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,PL /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -p s1,s1 /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 /tmp/LPHPr3nTR8/gtcheck.2.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0  /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -p B,A,C,A,C,B,D,A,D,B,D,C,E,A,E,B,E,C,E,D /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gtcheck.3.pairs /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 --n-matches 4 /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO  | sort
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:E,D,C /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:E,D,C -u PL /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:B -s gt:D /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:B -s gt:D -u PL /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -s qry:B -s gt:D,C /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -p B,C,B,D /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,GT -H /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u GT,PL -H /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,GT -H /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -u PL,PL -H /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gtcheck.4.pairs --distinctive-sites 3 /tmp/LPHPr3nTR8/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/test/gtcheck.4.pairs --distinctive-sites 3,1 /tmp/LPHPr3nTR8/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u GT -e 30 /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u GT -e 30 -p s1,s1 /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u GT -e 300 /tmp/LPHPr3nTR8/gtcheck.1.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -u PL -e 30 /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/LPHPr3nTR8/gtcheck.ntop.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck --n-matches 2 /tmp/LPHPr3nTR8/gtcheck.ntop.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck  /tmp/LPHPr3nTR8/gtcheck.5.vcf.gz -g /tmp/LPHPr3nTR8/gtcheck.5.gts.vcf.gz | grep -v ^# | grep -v Time
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -p A,B,B,C /tmp/LPHPr3nTR8/gtcheck.6.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools gtcheck -t 11:33 -p A,D,A,E,D,E -u GT -e 10 /tmp/LPHPr3nTR8/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/LPHPr3nTR8/merge.4.b.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/LPHPr3nTR8/merge.4.b.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/LPHPr3nTR8/split-vep.2.vcf.gz  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/plugins; /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/bcftools +vcf2table /tmp/LPHPr3nTR8/split-vep.2.bcf  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok


Number of tests:
    total   .. 2396
    passed  .. 2396
    failed  .. 0

+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bcftools-1.23-1.fc44.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.dX6IiM
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ cd bcftools-1.23
+ DOCDIR=/builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/AUTHORS /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/NEWS /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/doc/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.RuZkdx
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ cd bcftools-1.23
+ LICENSEDIR=/builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/licenses/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/licenses/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.23-build/bcftools-1.23/LICENSE /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT/usr/share/licenses/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bcftools = 1.23-1.fc44 bcftools(ppc-64) = 1.23-1.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl /usr/bin/python3 ld64.so.2()(64bit) ld64.so.2(GLIBC_2.23)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgsl.so.28()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libhts.so.3(HTSLIB_1.0)(64bit) libhts.so.3(HTSLIB_1.1)(64bit) libhts.so.3(HTSLIB_1.10)(64bit) libhts.so.3(HTSLIB_1.13)(64bit) libhts.so.3(HTSLIB_1.16)(64bit) libhts.so.3(HTSLIB_1.17)(64bit) libhts.so.3(HTSLIB_1.2.1)(64bit) libhts.so.3(HTSLIB_1.22)(64bit) libhts.so.3(HTSLIB_1.3)(64bit) libhts.so.3(HTSLIB_1.4)(64bit) libhts.so.3(HTSLIB_1.5)(64bit) libhts.so.3(HTSLIB_1.6)(64bit) libhts.so.3(HTSLIB_1.7)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.32)(64bit) libm.so.6(GLIBC_2.43)(64bit) libperl.so.5.42()(64bit) rtld(GNU_HASH)
Conflicts: samtools < 1.0
Processing files: bcftools-debugsource-1.23-1.fc44.ppc64le
Provides: bcftools-debugsource = 1.23-1.fc44 bcftools-debugsource(ppc-64) = 1.23-1.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bcftools-debuginfo-1.23-1.fc44.ppc64le
Provides: bcftools-debuginfo = 1.23-1.fc44 bcftools-debuginfo(ppc-64) = 1.23-1.fc44 debuginfo(build-id) = 034d4524d4ff7c381dd572a5cdee81ae46caaf28 debuginfo(build-id) = 1021f97ccdccd0197ac6e181ddfda888a5d8d8ee debuginfo(build-id) = 13485a05e48dba4393ed536cb0acb0be717be65a debuginfo(build-id) = 1d341b97be2ea837bf1b3f20300e74f743f6101f debuginfo(build-id) = 2bc2d3562457335f59034ffda2f44384c525057b debuginfo(build-id) = 2d82758e910db49e02456bd4b9c13969bae3f66e debuginfo(build-id) = 32f704b45eab2a97392fbcd3d50e20d694a951e2 debuginfo(build-id) = 385cb4f2572fef700605aada3da2239a7a43aafb debuginfo(build-id) = 3d7833e8dd43d1e64bbe66c1d9afe48279069f31 debuginfo(build-id) = 419a3cce8dae714295c309cf7fc06f01629b7200 debuginfo(build-id) = 47541aa820f8db1c64b537e3506d8695a8cdb0e1 debuginfo(build-id) = 4755c679908b61f7d11ff1371ceadae71cd30489 debuginfo(build-id) = 4d8c88eb33c0fde2eeb6c065c41d0cd811219217 debuginfo(build-id) = 64ac54ad4796da919f4ff7d222bed6a62d41f978 debuginfo(build-id) = 66782dc0cf92c08af0dee8c3a86458848cba1b08 debuginfo(build-id) = 68e561753be58448a47734861b6b3d9febe86bac debuginfo(build-id) = 765e9ab3d4fe25beff22c751b309705467260de9 debuginfo(build-id) = 7d4bbadbf071870ab040de669548eecb1bf49fd0 debuginfo(build-id) = 8179ece72226a39304152f21e71db949d1ba6599 debuginfo(build-id) = 88447a59855b493df7a5e5761fa61749d9edca0c debuginfo(build-id) = 93d0069bc86da87000cd7b7628002841a2a8b688 debuginfo(build-id) = 97a3cd5301b5df32eb28c2a6b3088eae743e29eb debuginfo(build-id) = 9b1972aee51c1a84cee9557c585cf7a01514bab5 debuginfo(build-id) = a2079d7218f935c017d65e6eba629462769a88ab debuginfo(build-id) = a544c41336d3c1a5540e4d14db0d042195fcaf69 debuginfo(build-id) = b1072e9284d2c8b21356b5e531e42965c407b454 debuginfo(build-id) = b16b64b7e1ddde532e0ed5d72a80507448b59ca0 debuginfo(build-id) = b69152b71c0fb8749eb69a96d407a35492e3506b debuginfo(build-id) = bddddff9ad3de03c7691701af21e51d7802656c1 debuginfo(build-id) = cde0cd2fa5166163819626e9cb39b9256dffb0b0 debuginfo(build-id) = ce4c8b2c90145050308e3f44c531cdb92cabf985 debuginfo(build-id) = cf670c9a499f875203b8bd7f5bfcbbe42fd87f07 debuginfo(build-id) = d2eb2d58cf8f324bd2c660623694fcf270afd84c debuginfo(build-id) = d9c925d7482e2e7b1f98430f993b78e51bf93feb debuginfo(build-id) = dbaac961578026949e8b300b1d996065d1255e74 debuginfo(build-id) = e5fa6fa4476bd266367d943ce0814a58525de1cd debuginfo(build-id) = e89fda6a339412bccccedc928640549f57b63965 debuginfo(build-id) = ef19feceab49b43fb631b7b6c291123bf91c8a7f debuginfo(build-id) = f759ce1fd8c72f3807e0913af82c75194ee747e8 debuginfo(build-id) = fcfd2c7e163ab62159f3d4832fd522aea393c3ad debuginfo(build-id) = fdb24ad3dc18529d22d3b59ba5e8476c91964dff debuginfo(build-id) = ff108a5bf79c4f321d64c090185d4dada09dbd32
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bcftools-debugsource(ppc-64) = 1.23-1.fc44
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/bcftools-1.23-build/BUILDROOT
Wrote: /builddir/build/RPMS/bcftools-1.23-1.fc44.ppc64le.rpm
Wrote: /builddir/build/RPMS/bcftools-debugsource-1.23-1.fc44.ppc64le.rpm
Wrote: /builddir/build/RPMS/bcftools-debuginfo-1.23-1.fc44.ppc64le.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.tBAgbx
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.23-build
+ test -d /builddir/build/BUILD/bcftools-1.23-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bcftools-1.23-build
+ rm -rf /builddir/build/BUILD/bcftools-1.23-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bcftools-1.23-1.fc44.src.rpm
Finish: build phase for bcftools-1.23-1.fc44.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1769509248.800739/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/bcftools-1.23-1.fc44.src.rpm) Config(child) 3 minutes 1 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc44",
            "arch": "ppc64le"
        },
        {
            "name": "bcftools-debuginfo",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc44",
            "arch": "ppc64le"
        },
        {
            "name": "bcftools-debugsource",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc44",
            "arch": "ppc64le"
        },
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc44",
            "arch": "src"
        }
    ]
}
RPMResults finished