Warning: Permanently added '2620:52:6:1161:dead:beef:cafe:c18d' (ED25519) to the list of known hosts.
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-9mcebtp3/samtools/samtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-9mcebtp3/samtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1769509459.061935 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.6 starting (python version = 3.14.2, NVR = mock-6.6-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-9mcebtp3/samtools/samtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-9mcebtp3/samtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1769509459.061935 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-9mcebtp3/samtools/samtools.spec)  Config(fedora-rawhide-ppc64le)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.6
INFO: Mock Version: 6.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1769509459.061935/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-aa5fc689-065b-4fcd-b0a1-910d4738ec07
INFO: Checking that 12a419313a16e514e81c051223cfcfed72dfa675cb3fd0c61041ecca539d81bf image matches host's architecture
INFO: Copy content of container 12a419313a16e514e81c051223cfcfed72dfa675cb3fd0c61041ecca539d81bf to /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1769509459.061935/root
INFO: mounting 12a419313a16e514e81c051223cfcfed72dfa675cb3fd0c61041ecca539d81bf with podman image mount
INFO: image 12a419313a16e514e81c051223cfcfed72dfa675cb3fd0c61041ecca539d81bf as /var/lib/containers/storage/overlay/d570452d4fd034d92f01f2c6d8eb8c19955975875d4ff7a3b07083d9e35671ce/merged
INFO: umounting image 12a419313a16e514e81c051223cfcfed72dfa675cb3fd0c61041ecca539d81bf (/var/lib/containers/storage/overlay/d570452d4fd034d92f01f2c6d8eb8c19955975875d4ff7a3b07083d9e35671ce/merged) with podman image umount
INFO: Removing image mock-bootstrap-aa5fc689-065b-4fcd-b0a1-910d4738ec07
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1769509459.061935/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-2.fc44.ppc64le
  rpm-sequoia-1.10.0-2.fc44.ppc64le
  dnf5-5.3.0.0-7.fc44.ppc64le
  dnf5-plugins-5.3.0.0-7.fc44.ppc64le
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 Copr repository                        100% | 132.0   B/s |   3.9 KiB |  00m31s
 fedora                                 100% | 331.3 KiB/s |  20.3 MiB |  01m03s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/repodata/repomd.xml [Connection timed out after 30000 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/repodata/repomd.xml
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/repodata/fa5606dc2c90157f05db682dc0c520c671e360a90ee0e4da59632e77aa2f4827-primary.xml.zck [Connection timed out after 30001 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/repodata/fa5606dc2c90157f05db682dc0c520c671e360a90ee0e4da59632e77aa2f4827-primary.xml.zck
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/repodata/910018b8af0ac150015a3c5d28cabbd9d624d98783a957189e3d1df40340f9e0-comps-Everything.ppc64le.xml.zst [Connection timed out after 30001 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/repodata/910018b8af0ac150015a3c5d28cabbd9d624d98783a957189e3d1df40340f9e0-comps-Everything.ppc64le.xml.zst
Repositories loaded.
Package                            Arch    Version                      Repository      Size
Installing group/module packages:
 bash                              ppc64le 0:5.3.9-3.fc44               fedora       8.9 MiB
 bzip2                             ppc64le 0:1.0.8-23.fc44              fedora     170.8 KiB
 coreutils                         ppc64le 0:9.9-4.fc44                 fedora       9.3 MiB
 cpio                              ppc64le 0:2.15-6.fc43                fedora       1.2 MiB
 diffutils                         ppc64le 0:3.12-5.fc44                fedora       1.7 MiB
 fedora-release-common             noarch  0:44-0.10                    fedora      20.6 KiB
 findutils                         ppc64le 1:4.10.0-7.fc44              fedora       2.0 MiB
 gawk                              ppc64le 0:5.3.2-3.fc44               fedora       2.8 MiB
 glibc-minimal-langpack            ppc64le 0:2.43-1.fc44                fedora       0.0   B
 grep                              ppc64le 0:3.12-3.fc44                fedora       1.0 MiB
 gzip                              ppc64le 0:1.14-2.fc44                fedora     437.3 KiB
 info                              ppc64le 0:7.2-7.fc44                 fedora     485.4 KiB
 patch                             ppc64le 0:2.8-4.fc44                 fedora     262.3 KiB
 redhat-rpm-config                 noarch  0:343-19.fc44                fedora     183.6 KiB
 rpm-build                         ppc64le 0:6.0.1-2.fc44               fedora     662.4 KiB
 sed                               ppc64le 0:4.9-7.fc44                 fedora     937.0 KiB
 shadow-utils                      ppc64le 2:4.19.0-5.fc44              fedora       4.9 MiB
 tar                               ppc64le 2:1.35-8.fc44                fedora       3.1 MiB
 unzip                             ppc64le 0:6.0-69.fc44                fedora     533.4 KiB
 util-linux                        ppc64le 0:2.41.3-12.fc44             fedora       6.9 MiB
 which                             ppc64le 0:2.23-4.fc44                fedora     123.2 KiB
 xz                                ppc64le 1:5.8.2-2.fc44               fedora       1.4 MiB
Installing dependencies:
 R-srpm-macros                     noarch  0:1.3.4-3.fc44               fedora       3.4 KiB
 add-determinism                   ppc64le 0:0.7.2-3.fc44               fedora       2.4 MiB
 alternatives                      ppc64le 0:1.33-5.fc44                fedora      89.9 KiB
 ansible-srpm-macros               noarch  0:1-20.1.fc44                fedora      35.7 KiB
 audit-libs                        ppc64le 0:4.1.2-4.fc44               fedora     550.2 KiB
 binutils                          ppc64le 0:2.45.50-19.fc44            fedora      32.8 MiB
 build-reproducibility-srpm-macros noarch  0:0.7.2-3.fc44               fedora       1.2 KiB
 bzip2-libs                        ppc64le 0:1.0.8-23.fc44              fedora     136.4 KiB
 ca-certificates                   noarch  0:2025.2.80_v9.0.304-5.fc44  fedora       2.7 MiB
 cmake-srpm-macros                 noarch  0:3.31.10-5.fc44             fedora     524.0   B
 coreutils-common                  ppc64le 0:9.9-4.fc44                 fedora      11.2 MiB
 crypto-policies                   noarch  0:20251128-3.git19878fe.fc44 fedora     132.6 KiB
 curl                              ppc64le 0:8.18.0-3.fc44              fedora     528.0 KiB
 cyrus-sasl-lib                    ppc64le 0:2.1.28-35.fc44             fedora       2.9 MiB
 debugedit                         ppc64le 0:5.2-6.fc44                 fedora     382.0 KiB
 dwz                               ppc64le 0:0.16-3.fc44                fedora     386.5 KiB
 ed                                ppc64le 0:1.22.4-2.fc44              fedora     157.0 KiB
 efi-srpm-macros                   noarch  0:6-6.fc44                   fedora      40.2 KiB
 elfutils                          ppc64le 0:0.194-3.fc44               fedora       3.4 MiB
 elfutils-debuginfod-client        ppc64le 0:0.194-3.fc44               fedora     143.3 KiB
 elfutils-default-yama-scope       noarch  0:0.194-3.fc44               fedora       1.8 KiB
 elfutils-libelf                   ppc64le 0:0.194-3.fc44               fedora       1.2 MiB
 elfutils-libs                     ppc64le 0:0.194-3.fc44               fedora     874.3 KiB
 fedora-gpg-keys                   noarch  0:44-0.1                     fedora     131.2 KiB
 fedora-release                    noarch  0:44-0.10                    fedora       0.0   B
 fedora-release-identity-basic     noarch  0:44-0.10                    fedora     664.0   B
 fedora-repos                      noarch  0:44-0.1                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch  0:44-0.1                     fedora       2.2 KiB
 file                              ppc64le 0:5.46-9.fc44                fedora     140.0 KiB
 file-libs                         ppc64le 0:5.46-9.fc44                fedora      11.9 MiB
 filesystem                        ppc64le 0:3.18-52.fc44               fedora     112.0   B
 filesystem-srpm-macros            noarch  0:3.18-52.fc44               fedora      38.2 KiB
 fonts-srpm-macros                 noarch  1:5.0.0-2.fc44               fedora      55.8 KiB
 forge-srpm-macros                 noarch  0:0.4.0-4.fc44               fedora      38.9 KiB
 fpc-srpm-macros                   noarch  0:1.3-16.fc44                fedora     144.0   B
 gap-srpm-macros                   noarch  0:2-2.fc44                   fedora       2.1 KiB
 gdb-minimal                       ppc64le 0:17.1-2.fc44                fedora      16.5 MiB
 gdbm-libs                         ppc64le 1:1.23-11.fc44               fedora     233.3 KiB
 ghc-srpm-macros                   noarch  0:1.9.2-4.fc44               fedora     779.0   B
 glibc                             ppc64le 0:2.43-1.fc44                fedora      11.7 MiB
 glibc-common                      ppc64le 0:2.43-1.fc44                fedora       1.5 MiB
 glibc-gconv-extra                 ppc64le 0:2.43-1.fc44                fedora      18.5 MiB
 gmp                               ppc64le 1:6.3.0-5.fc44               fedora     786.1 KiB
 gnat-srpm-macros                  noarch  0:7-2.fc44                   fedora       1.0 KiB
 gnulib-l10n                       noarch  0:20241231-2.fc44            fedora     655.0 KiB
 gnupg2                            ppc64le 0:2.4.9-4.fc44               fedora       6.8 MiB
 gnupg2-dirmngr                    ppc64le 0:2.4.9-4.fc44               fedora     837.8 KiB
 gnupg2-gpg-agent                  ppc64le 0:2.4.9-4.fc44               fedora     974.1 KiB
 gnupg2-gpgconf                    ppc64le 0:2.4.9-4.fc44               fedora     321.5 KiB
 gnupg2-keyboxd                    ppc64le 0:2.4.9-4.fc44               fedora     233.1 KiB
 gnupg2-verify                     ppc64le 0:2.4.9-4.fc44               fedora     428.1 KiB
 gnutls                            ppc64le 0:3.8.11-10.fc44             fedora       4.0 MiB
 go-srpm-macros                    noarch  0:3.8.0-2.fc44               fedora      61.9 KiB
 gpgverify                         noarch  0:2.2-4.fc44                 fedora       8.7 KiB
 ima-evm-utils-libs                ppc64le 0:1.6.2-8.fc44               fedora      92.5 KiB
 jansson                           ppc64le 0:2.14-4.fc44                fedora     156.9 KiB
 java-srpm-macros                  noarch  0:1-8.fc44                   fedora     870.0   B
 json-c                            ppc64le 0:0.18-8.fc44                fedora     138.5 KiB
 kernel-srpm-macros                noarch  0:1.0-28.fc44                fedora       1.9 KiB
 keyutils-libs                     ppc64le 0:1.6.3-7.fc44               fedora      97.9 KiB
 krb5-libs                         ppc64le 0:1.21.3-12.fc44             fedora       2.9 MiB
 libacl                            ppc64le 0:2.3.2-6.fc44               fedora      67.5 KiB
 libarchive                        ppc64le 0:3.8.4-2.fc44               fedora       1.3 MiB
 libassuan                         ppc64le 0:2.5.7-5.fc44               fedora     215.8 KiB
 libattr                           ppc64le 0:2.5.2-8.fc44               fedora      68.0 KiB
 libblkid                          ppc64le 0:2.41.3-12.fc44             fedora     354.4 KiB
 libbrotli                         ppc64le 0:1.2.0-3.fc44               fedora       1.0 MiB
 libcap                            ppc64le 0:2.77-2.fc44                fedora     506.7 KiB
 libcap-ng                         ppc64le 0:0.9-5.fc44                 fedora     160.0 KiB
 libcom_err                        ppc64le 0:1.47.3-4.fc44              fedora     110.9 KiB
 libcurl                           ppc64le 0:8.18.0-3.fc44              fedora       1.2 MiB
 libeconf                          ppc64le 0:0.7.9-3.fc44               fedora      80.7 KiB
 libevent                          ppc64le 0:2.1.12-17.fc44             fedora       1.3 MiB
 libfdisk                          ppc64le 0:2.41.3-12.fc44             fedora     482.9 KiB
 libffi                            ppc64le 0:3.5.2-2.fc44               fedora     347.5 KiB
 libfsverity                       ppc64le 0:1.6-4.fc44                 fedora      68.0 KiB
 libgcc                            ppc64le 0:16.0.1-0.3.fc44.1          fedora     286.4 KiB
 libgcrypt                         ppc64le 0:1.11.2-1.fc44              fedora       1.5 MiB
 libgomp                           ppc64le 0:16.0.1-0.3.fc44.1          fedora     655.2 KiB
 libgpg-error                      ppc64le 0:1.58-2.fc44                fedora       1.0 MiB
 libidn2                           ppc64le 0:2.3.8-3.fc44               fedora     560.1 KiB
 libksba                           ppc64le 0:1.6.7-5.fc44               fedora     526.3 KiB
 liblastlog2                       ppc64le 0:2.41.3-12.fc44             fedora     137.2 KiB
 libmount                          ppc64le 0:2.41.3-12.fc44             fedora     548.2 KiB
 libnghttp2                        ppc64le 0:1.68.0-3.fc44              fedora     197.8 KiB
 libnghttp3                        ppc64le 0:1.15.0-1.fc44              fedora     206.5 KiB
 libpkgconf                        ppc64le 0:2.3.0-4.fc44               fedora     133.8 KiB
 libpsl                            ppc64le 0:0.21.5-7.fc44              fedora     132.0 KiB
 librtas                           ppc64le 0:2.0.6-6.fc44               fedora     305.3 KiB
 libselinux                        ppc64le 0:3.9-7.fc44                 fedora     265.0 KiB
 libselinux-utils                  ppc64le 0:3.9-7.fc44                 fedora       1.3 MiB
 libsemanage                       ppc64le 0:3.9-5.fc44                 fedora     423.8 KiB
 libsepol                          ppc64le 0:3.9-3.fc44                 fedora       1.0 MiB
 libsmartcols                      ppc64le 0:2.41.3-12.fc44             fedora     289.3 KiB
 libssh                            ppc64le 0:0.11.3-1.fc44              fedora     715.2 KiB
 libssh-config                     noarch  0:0.11.3-1.fc44              fedora     277.0   B
 libstdc++                         ppc64le 0:16.0.1-0.3.fc44.1          fedora       3.9 MiB
 libtasn1                          ppc64le 0:4.20.0-3.fc44              fedora     219.9 KiB
 libtool-ltdl                      ppc64le 0:2.5.4-10.fc44              fedora      93.8 KiB
 libunistring                      ppc64le 0:1.1-11.fc44                fedora       1.9 MiB
 libusb1                           ppc64le 0:1.0.29-5.fc44              fedora     242.7 KiB
 libuuid                           ppc64le 0:2.41.3-12.fc44             fedora      69.2 KiB
 libverto                          ppc64le 0:0.3.2-12.fc44              fedora      69.0 KiB
 libxcrypt                         ppc64le 0:4.5.2-3.fc44               fedora     336.9 KiB
 libxml2                           ppc64le 0:2.12.10-6.fc44             fedora       2.3 MiB
 libzstd                           ppc64le 0:1.5.7-5.fc44               fedora       1.1 MiB
 linkdupes                         ppc64le 0:0.7.2-3.fc44               fedora     906.9 KiB
 lua-libs                          ppc64le 0:5.4.8-5.fc44               fedora     393.7 KiB
 lua-srpm-macros                   noarch  0:1-17.fc44                  fedora       1.3 KiB
 lz4-libs                          ppc64le 0:1.10.0-4.fc44              fedora     261.0 KiB
 mpfr                              ppc64le 0:4.2.2-3.fc44               fedora     913.5 KiB
 ncurses-base                      noarch  0:6.5-9.20250614.fc44        fedora     328.1 KiB
 ncurses-libs                      ppc64le 0:6.5-9.20250614.fc44        fedora       1.5 MiB
 nettle                            ppc64le 0:3.10.1-3.fc44              fedora     957.4 KiB
 ngtcp2                            ppc64le 0:1.19.0-2.fc44              fedora     405.0 KiB
 ngtcp2-crypto-ossl                ppc64le 0:1.19.0-2.fc44              fedora      67.1 KiB
 npth                              ppc64le 0:1.8-4.fc44                 fedora      93.0 KiB
 ocaml-srpm-macros                 noarch  0:11-3.fc44                  fedora       1.9 KiB
 openblas-srpm-macros              noarch  0:2-21.fc44                  fedora     112.0   B
 openldap                          ppc64le 0:2.6.10-7.fc44              fedora     889.6 KiB
 openssl-libs                      ppc64le 1:3.5.4-2.fc44               fedora       9.1 MiB
 p11-kit                           ppc64le 0:0.25.8-2.fc44              fedora       2.9 MiB
 p11-kit-trust                     ppc64le 0:0.25.8-2.fc44              fedora     593.9 KiB
 package-notes-srpm-macros         noarch  0:0.5-15.fc44                fedora       1.6 KiB
 pam-libs                          ppc64le 0:1.7.2-1.fc44               fedora     286.0 KiB
 pcre2                             ppc64le 0:10.47-1.fc44.1             fedora     841.8 KiB
 pcre2-syntax                      noarch  0:10.47-1.fc44.1             fedora     281.9 KiB
 perl-srpm-macros                  noarch  0:1-61.fc44                  fedora     861.0   B
 pkgconf                           ppc64le 0:2.3.0-4.fc44               fedora     112.2 KiB
 pkgconf-m4                        noarch  0:2.3.0-4.fc44               fedora      14.4 KiB
 pkgconf-pkg-config                ppc64le 0:2.3.0-4.fc44               fedora     990.0   B
 policycoreutils                   ppc64le 0:3.9-8.fc44                 fedora       1.5 MiB
 popt                              ppc64le 0:1.19-10.fc44               fedora     208.6 KiB
 publicsuffix-list-dafsa           noarch  0:20260116-1.fc44            fedora      70.4 KiB
 pyproject-srpm-macros             noarch  0:1.18.6-2.fc44              fedora       1.9 KiB
 python-srpm-macros                noarch  0:3.14-10.fc44               fedora      51.6 KiB
 qt5-srpm-macros                   noarch  0:5.15.18-2.fc44             fedora     500.0   B
 qt6-srpm-macros                   noarch  0:6.10.1-2.fc44              fedora     464.0   B
 readline                          ppc64le 0:8.3-4.fc44                 fedora     627.4 KiB
 rpm                               ppc64le 0:6.0.1-2.fc44               fedora       4.2 MiB
 rpm-build-libs                    ppc64le 0:6.0.1-2.fc44               fedora     327.9 KiB
 rpm-libs                          ppc64le 0:6.0.1-2.fc44               fedora       1.2 MiB
 rpm-plugin-selinux                ppc64le 0:6.0.1-2.fc44               fedora      67.8 KiB
 rpm-sequoia                       ppc64le 0:1.10.0-2.fc44              fedora       4.9 MiB
 rpm-sign-libs                     ppc64le 0:6.0.1-2.fc44               fedora      67.5 KiB
 rust-srpm-macros                  noarch  0:28.4-3.fc44                fedora       5.5 KiB
 selinux-policy                    noarch  0:42.22-1.fc44               fedora      32.0 KiB
 selinux-policy-targeted           noarch  0:42.22-1.fc44               fedora      18.5 MiB
 setup                             noarch  0:2.15.0-28.fc44             fedora     724.9 KiB
 sqlite-libs                       ppc64le 0:3.51.2-1.fc44              fedora       1.9 MiB
 systemd-libs                      ppc64le 0:259-9.fc44                 fedora       3.0 MiB
 systemd-standalone-sysusers       ppc64le 0:259-9.fc44                 fedora     393.7 KiB
 tpm2-tss                          ppc64le 0:4.1.3-9.fc44               fedora       2.4 MiB
 tree-sitter-srpm-macros           noarch  0:0.4.2-2.fc44               fedora       8.3 KiB
 util-linux-core                   ppc64le 0:2.41.3-12.fc44             fedora       2.5 MiB
 xxhash-libs                       ppc64le 0:0.8.3-4.fc44               fedora      85.5 KiB
 xz-libs                           ppc64le 1:5.8.2-2.fc44               fedora     265.2 KiB
 zig-srpm-macros                   noarch  0:1-8.fc44                   fedora       1.3 KiB
 zip                               ppc64le 0:3.0-45.fc44                fedora     889.1 KiB
 zlib-ng-compat                    ppc64le 0:2.3.2-3.fc44               fedora     197.3 KiB
 zstd                              ppc64le 0:1.5.7-5.fc44               fedora     562.0 KiB
Installing groups:
 Buildsystem building group                                                                 

Transaction Summary:
 Installing:       183 packages

Total size of inbound packages is 73 MiB. Need to download 73 MiB.
After this operation, 279 MiB extra will be used (install 279 MiB, remove 0 B).
[  1/183] bzip2-0:1.0.8-23.fc44.ppc64le 100% |   1.7 KiB/s |  53.0 KiB |  00m30s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/b/bzip2-1.0.8-23.fc44.ppc64le.rpm [Connection timed out after 30000 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/b/bzip2-1.0.8-23.fc44.ppc64le.rpm
[  2/183] coreutils-0:9.9-4.fc44.ppc64l 100% |  41.0 KiB/s |   1.2 MiB |  00m31s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/c/coreutils-9.9-4.fc44.ppc64le.rpm [Connection timed out after 30000 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/c/coreutils-9.9-4.fc44.ppc64le.rpm
[  3/183] cpio-0:2.15-6.fc43.ppc64le    100% |   1.4 MiB/s | 300.4 KiB |  00m00s
[  4/183] bash-0:5.3.9-3.fc44.ppc64le   100% |  65.2 KiB/s |   1.9 MiB |  00m31s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/b/bash-5.3.9-3.fc44.ppc64le.rpm [Connection timed out after 30000 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/b/bash-5.3.9-3.fc44.ppc64le.rpm
[  5/183] diffutils-0:3.12-5.fc44.ppc64 100% |   6.4 MiB/s | 406.0 KiB |  00m00s
[  6/183] fedora-release-common-0:44-0. 100% | 632.5 KiB/s |  24.7 KiB |  00m00s
[  7/183] findutils-1:4.10.0-7.fc44.ppc 100% |  11.7 MiB/s | 586.5 KiB |  00m00s
[  8/183] gawk-0:5.3.2-3.fc44.ppc64le   100% |  18.8 MiB/s |   1.2 MiB |  00m00s
[  9/183] glibc-minimal-langpack-0:2.43 100% |   1.2 MiB/s |  78.4 KiB |  00m00s
[ 10/183] grep-0:3.12-3.fc44.ppc64le    100% |   6.9 MiB/s | 308.8 KiB |  00m00s
[ 11/183] gzip-0:1.14-2.fc44.ppc64le    100% |   4.2 MiB/s | 178.8 KiB |  00m00s
[ 12/183] info-0:7.2-7.fc44.ppc64le     100% |   4.6 MiB/s | 203.1 KiB |  00m00s
[ 13/183] patch-0:2.8-4.fc44.ppc64le    100% |   2.9 MiB/s | 123.6 KiB |  00m00s
[ 14/183] redhat-rpm-config-0:343-19.fc 100% |   1.9 MiB/s |  79.4 KiB |  00m00s
[ 15/183] rpm-build-0:6.0.1-2.fc44.ppc6 100% |   3.8 MiB/s | 161.0 KiB |  00m00s
[ 16/183] sed-0:4.9-7.fc44.ppc64le      100% |   7.0 MiB/s | 322.6 KiB |  00m00s
[ 17/183] tar-2:1.35-8.fc44.ppc64le     100% |  14.9 MiB/s | 887.0 KiB |  00m00s
[ 18/183] shadow-utils-2:4.19.0-5.fc44. 100% |  17.0 MiB/s |   1.3 MiB |  00m00s
[ 19/183] unzip-0:6.0-69.fc44.ppc64le   100% |   4.1 MiB/s | 205.2 KiB |  00m00s
[ 20/183] util-linux-0:2.41.3-12.fc44.p 100% |  22.2 MiB/s |   1.3 MiB |  00m00s
[ 21/183] which-0:2.23-4.fc44.ppc64le   100% | 957.0 KiB/s |  43.1 KiB |  00m00s
[ 22/183] xz-1:5.8.2-2.fc44.ppc64le     100% |  12.4 MiB/s | 610.3 KiB |  00m00s
[ 23/183] filesystem-0:3.18-52.fc44.ppc 100% |  23.0 MiB/s |   1.3 MiB |  00m00s
[ 24/183] ncurses-libs-0:6.5-9.20250614 100% |   6.3 MiB/s | 381.1 KiB |  00m00s
[ 25/183] glibc-0:2.43-1.fc44.ppc64le   100% |  31.1 MiB/s |   3.3 MiB |  00m00s
[ 26/183] bzip2-libs-0:1.0.8-23.fc44.pp 100% |   1.0 MiB/s |  49.4 KiB |  00m00s
[ 27/183] coreutils-common-0:9.9-4.fc44 100% |  34.5 MiB/s |   2.1 MiB |  00m00s
[ 28/183] gmp-1:6.3.0-5.fc44.ppc64le    100% |   7.4 MiB/s | 319.9 KiB |  00m00s
[ 29/183] libacl-0:2.3.2-6.fc44.ppc64le 100% | 627.5 KiB/s |  26.4 KiB |  00m00s
[ 30/183] libattr-0:2.5.2-8.fc44.ppc64l 100% | 478.5 KiB/s |  18.7 KiB |  00m00s
[ 31/183] libcap-0:2.77-2.fc44.ppc64le  100% |   2.3 MiB/s |  94.2 KiB |  00m00s
[ 32/183] libselinux-0:3.9-7.fc44.ppc64 100% |   2.7 MiB/s | 111.7 KiB |  00m00s
[ 33/183] openssl-libs-1:3.5.4-2.fc44.p 100% |  40.5 MiB/s |   2.8 MiB |  00m00s
[ 34/183] systemd-libs-0:259-9.fc44.ppc 100% |  14.4 MiB/s | 884.9 KiB |  00m00s
[ 35/183] fedora-repos-0:44-0.1.noarch  100% | 153.8 KiB/s |   9.1 KiB |  00m00s
[ 36/183] mpfr-0:4.2.2-3.fc44.ppc64le   100% |   8.1 MiB/s | 357.9 KiB |  00m00s
[ 37/183] readline-0:8.3-4.fc44.ppc64le 100% |   5.7 MiB/s | 243.1 KiB |  00m00s
[ 38/183] glibc-common-0:2.43-1.fc44.pp 100% |   8.0 MiB/s | 377.2 KiB |  00m00s
[ 39/183] pcre2-0:10.47-1.fc44.1.ppc64l 100% |   6.6 MiB/s | 285.6 KiB |  00m00s
[ 40/183] ed-0:1.22.4-2.fc44.ppc64le    100% |   2.1 MiB/s |  87.1 KiB |  00m00s
[ 41/183] R-srpm-macros-0:1.3.4-3.fc44. 100% | 277.4 KiB/s |  10.8 KiB |  00m00s
[ 42/183] ansible-srpm-macros-0:1-20.1. 100% | 515.4 KiB/s |  20.1 KiB |  00m00s
[ 43/183] build-reproducibility-srpm-ma 100% | 333.4 KiB/s |  13.0 KiB |  00m00s
[ 44/183] cmake-srpm-macros-0:3.31.10-5 100% | 280.1 KiB/s |  10.6 KiB |  00m00s
[ 45/183] dwz-0:0.16-3.fc44.ppc64le     100% |   3.5 MiB/s | 145.8 KiB |  00m00s
[ 46/183] efi-srpm-macros-0:6-6.fc44.no 100% | 563.8 KiB/s |  22.6 KiB |  00m00s
[ 47/183] file-0:5.46-9.fc44.ppc64le    100% |   1.2 MiB/s |  49.6 KiB |  00m00s
[ 48/183] filesystem-srpm-macros-0:3.18 100% | 682.8 KiB/s |  26.6 KiB |  00m00s
[ 49/183] fonts-srpm-macros-1:5.0.0-2.f 100% | 684.5 KiB/s |  27.4 KiB |  00m00s
[ 50/183] forge-srpm-macros-0:0.4.0-4.f 100% | 512.4 KiB/s |  20.0 KiB |  00m00s
[ 51/183] fpc-srpm-macros-0:1.3-16.fc44 100% | 198.5 KiB/s |   7.9 KiB |  00m00s
[ 52/183] gap-srpm-macros-0:2-2.fc44.no 100% | 228.5 KiB/s |   9.1 KiB |  00m00s
[ 53/183] ghc-srpm-macros-0:1.9.2-4.fc4 100% | 227.6 KiB/s |   8.9 KiB |  00m00s
[ 54/183] gnat-srpm-macros-0:7-2.fc44.n 100% | 224.2 KiB/s |   8.7 KiB |  00m00s
[ 55/183] java-srpm-macros-0:1-8.fc44.n 100% | 197.9 KiB/s |   8.1 KiB |  00m00s
[ 56/183] go-srpm-macros-0:3.8.0-2.fc44 100% | 672.0 KiB/s |  28.2 KiB |  00m00s
[ 57/183] kernel-srpm-macros-0:1.0-28.f 100% | 232.0 KiB/s |   9.0 KiB |  00m00s
[ 58/183] lua-srpm-macros-0:1-17.fc44.n 100% | 227.6 KiB/s |   8.9 KiB |  00m00s
[ 59/183] ocaml-srpm-macros-0:11-3.fc44 100% | 237.8 KiB/s |   9.3 KiB |  00m00s
[ 60/183] openblas-srpm-macros-0:2-21.f 100% | 200.1 KiB/s |   7.8 KiB |  00m00s
[ 61/183] package-notes-srpm-macros-0:0 100% | 235.7 KiB/s |   9.2 KiB |  00m00s
[ 62/183] perl-srpm-macros-0:1-61.fc44. 100% | 210.6 KiB/s |   8.4 KiB |  00m00s
[ 63/183] pyproject-srpm-macros-0:1.18. 100% | 346.7 KiB/s |  13.5 KiB |  00m00s
[ 64/183] python-srpm-macros-0:3.14-10. 100% | 614.2 KiB/s |  24.0 KiB |  00m00s
[ 65/183] qt5-srpm-macros-0:5.15.18-2.f 100% | 217.2 KiB/s |   8.7 KiB |  00m00s
[ 66/183] qt6-srpm-macros-0:6.10.1-2.fc 100% | 237.0 KiB/s |   9.2 KiB |  00m00s
[ 67/183] rust-srpm-macros-0:28.4-3.fc4 100% | 269.8 KiB/s |  11.1 KiB |  00m00s
[ 68/183] rpm-0:6.0.1-2.fc44.ppc64le    100% |  12.6 MiB/s | 579.3 KiB |  00m00s
[ 69/183] tree-sitter-srpm-macros-0:0.4 100% | 345.4 KiB/s |  13.5 KiB |  00m00s
[ 70/183] zig-srpm-macros-0:1-8.fc44.no 100% | 225.9 KiB/s |   8.8 KiB |  00m00s
[ 71/183] zip-0:3.0-45.fc44.ppc64le     100% |   6.6 MiB/s | 276.6 KiB |  00m00s
[ 72/183] binutils-0:2.45.50-19.fc44.pp 100% |  54.9 MiB/s |   6.7 MiB |  00m00s
[ 73/183] debugedit-0:5.2-6.fc44.ppc64l 100% | 839.5 KiB/s |  89.8 KiB |  00m00s
[ 74/183] elfutils-0:0.194-3.fc44.ppc64 100% |   5.2 MiB/s | 571.6 KiB |  00m00s
[ 75/183] elfutils-libelf-0:0.194-3.fc4 100% |   4.9 MiB/s | 211.8 KiB |  00m00s
[ 76/183] libarchive-0:3.8.4-2.fc44.ppc 100% |  10.7 MiB/s | 495.1 KiB |  00m00s
[ 77/183] libgcc-0:16.0.1-0.3.fc44.1.pp 100% |   2.2 MiB/s |  95.1 KiB |  00m00s
[ 78/183] libstdc++-0:16.0.1-0.3.fc44.1 100% |  21.3 MiB/s |   1.0 MiB |  00m00s
[ 79/183] pkgconf-pkg-config-0:2.3.0-4. 100% | 219.4 KiB/s |   9.7 KiB |  00m00s
[ 80/183] popt-0:1.19-10.fc44.ppc64le   100% |   1.5 MiB/s |  69.9 KiB |  00m00s
[ 81/183] rpm-build-libs-0:6.0.1-2.fc44 100% |   3.2 MiB/s | 134.1 KiB |  00m00s
[ 82/183] rpm-libs-0:6.0.1-2.fc44.ppc64 100% |   9.6 MiB/s | 444.1 KiB |  00m00s
[ 83/183] zstd-0:1.5.7-5.fc44.ppc64le   100% |   4.2 MiB/s | 194.3 KiB |  00m00s
[ 84/183] audit-libs-0:4.1.2-4.fc44.ppc 100% |   3.7 MiB/s | 155.6 KiB |  00m00s
[ 85/183] libeconf-0:0.7.9-3.fc44.ppc64 100% |   1.0 MiB/s |  40.1 KiB |  00m00s
[ 86/183] libsemanage-0:3.9-5.fc44.ppc6 100% |   3.3 MiB/s | 134.1 KiB |  00m00s
[ 87/183] libxcrypt-0:4.5.2-3.fc44.ppc6 100% |   3.3 MiB/s | 139.7 KiB |  00m00s
[ 88/183] pam-libs-0:1.7.2-1.fc44.ppc64 100% |   1.5 MiB/s |  63.0 KiB |  00m00s
[ 89/183] setup-0:2.15.0-28.fc44.noarch 100% |   3.8 MiB/s | 157.2 KiB |  00m00s
[ 90/183] libblkid-0:2.41.3-12.fc44.ppc 100% |   3.4 MiB/s | 142.9 KiB |  00m00s
[ 91/183] libcap-ng-0:0.9-5.fc44.ppc64l 100% | 800.9 KiB/s |  33.6 KiB |  00m00s
[ 92/183] libfdisk-0:2.41.3-12.fc44.ppc 100% |   4.1 MiB/s | 177.1 KiB |  00m00s
[ 93/183] liblastlog2-0:2.41.3-12.fc44. 100% | 590.0 KiB/s |  24.2 KiB |  00m00s
[ 94/183] libmount-0:2.41.3-12.fc44.ppc 100% |   4.2 MiB/s | 185.7 KiB |  00m00s
[ 95/183] librtas-0:2.0.6-6.fc44.ppc64l 100% |   1.9 MiB/s |  83.2 KiB |  00m00s
[ 96/183] libsmartcols-0:2.41.3-12.fc44 100% |   2.7 MiB/s | 110.6 KiB |  00m00s
[ 97/183] libuuid-0:2.41.3-12.fc44.ppc6 100% | 713.4 KiB/s |  27.8 KiB |  00m00s
[ 98/183] util-linux-core-0:2.41.3-12.f 100% |  12.8 MiB/s | 591.3 KiB |  00m00s
[ 99/183] zlib-ng-compat-0:2.3.2-3.fc44 100% |   2.2 MiB/s |  91.3 KiB |  00m00s
[100/183] xz-libs-1:5.8.2-2.fc44.ppc64l 100% |   3.0 MiB/s | 126.8 KiB |  00m00s
[101/183] glibc-gconv-extra-0:2.43-1.fc 100% |  28.6 MiB/s |   1.7 MiB |  00m00s
[102/183] ncurses-base-0:6.5-9.20250614 100% |   2.1 MiB/s |  88.2 KiB |  00m00s
[103/183] gnulib-l10n-0:20241231-2.fc44 100% |   3.5 MiB/s | 150.3 KiB |  00m00s
[104/183] libsepol-0:3.9-3.fc44.ppc64le 100% |   8.4 MiB/s | 377.7 KiB |  00m00s
[105/183] ca-certificates-0:2025.2.80_v 100% |  19.0 MiB/s | 973.5 KiB |  00m00s
[106/183] crypto-policies-0:20251128-3. 100% |   1.9 MiB/s |  98.3 KiB |  00m00s
[107/183] fedora-gpg-keys-0:44-0.1.noar 100% |   3.2 MiB/s | 138.8 KiB |  00m00s
[108/183] fedora-repos-rawhide-0:44-0.1 100% | 216.2 KiB/s |   8.6 KiB |  00m00s
[109/183] pcre2-syntax-0:10.47-1.fc44.1 100% |   3.9 MiB/s | 164.7 KiB |  00m00s
[110/183] add-determinism-0:0.7.2-3.fc4 100% |  18.7 MiB/s | 918.3 KiB |  00m00s
[111/183] linkdupes-0:0.7.2-3.fc44.ppc6 100% |   8.6 MiB/s | 386.7 KiB |  00m00s
[112/183] file-libs-0:5.46-9.fc44.ppc64 100% |  16.8 MiB/s | 862.1 KiB |  00m00s
[113/183] curl-0:8.18.0-3.fc44.ppc64le  100% |   5.9 MiB/s | 247.6 KiB |  00m00s
[114/183] alternatives-0:1.33-5.fc44.pp 100% |   1.1 MiB/s |  43.2 KiB |  00m00s
[115/183] elfutils-debuginfod-client-0: 100% |   1.2 MiB/s |  49.2 KiB |  00m00s
[116/183] jansson-0:2.14-4.fc44.ppc64le 100% |   1.2 MiB/s |  50.6 KiB |  00m00s
[117/183] elfutils-libs-0:0.194-3.fc44. 100% |   7.0 MiB/s | 307.8 KiB |  00m00s
[118/183] libzstd-0:1.5.7-5.fc44.ppc64l 100% |   8.9 MiB/s | 399.6 KiB |  00m00s
[119/183] libxml2-0:2.12.10-6.fc44.ppc6 100% |  15.8 MiB/s | 778.2 KiB |  00m00s
[120/183] lz4-libs-0:1.10.0-4.fc44.ppc6 100% |   2.4 MiB/s | 101.7 KiB |  00m00s
[121/183] pkgconf-0:2.3.0-4.fc44.ppc64l 100% |   1.1 MiB/s |  45.3 KiB |  00m00s
[122/183] pkgconf-m4-0:2.3.0-4.fc44.noa 100% | 342.9 KiB/s |  14.1 KiB |  00m00s
[123/183] libgomp-0:16.0.1-0.3.fc44.1.p 100% |   8.4 MiB/s | 387.3 KiB |  00m00s
[124/183] lua-libs-0:5.4.8-5.fc44.ppc64 100% |   3.5 MiB/s | 149.7 KiB |  00m00s
[125/183] rpm-sign-libs-0:6.0.1-2.fc44. 100% | 705.6 KiB/s |  28.2 KiB |  00m00s
[126/183] rpm-sequoia-0:1.10.0-2.fc44.p 100% |  28.0 MiB/s |   1.6 MiB |  00m00s
[127/183] sqlite-libs-0:3.51.2-1.fc44.p 100% |  13.9 MiB/s | 880.1 KiB |  00m00s
[128/183] libffi-0:3.5.2-2.fc44.ppc64le 100% | 977.7 KiB/s |  42.0 KiB |  00m00s
[129/183] p11-kit-0:0.25.8-2.fc44.ppc64 100% |  11.1 MiB/s | 512.8 KiB |  00m00s
[130/183] p11-kit-trust-0:0.25.8-2.fc44 100% |   3.7 MiB/s | 155.1 KiB |  00m00s
[131/183] json-c-0:0.18-8.fc44.ppc64le  100% |   1.2 MiB/s |  49.8 KiB |  00m00s
[132/183] elfutils-default-yama-scope-0 100% | 305.3 KiB/s |  11.9 KiB |  00m00s
[133/183] libpkgconf-0:2.3.0-4.fc44.ppc 100% |   1.1 MiB/s |  42.7 KiB |  00m00s
[134/183] gnupg2-0:2.4.9-4.fc44.ppc64le 100% |  31.9 MiB/s |   1.7 MiB |  00m00s
[135/183] ima-evm-utils-libs-0:1.6.2-8. 100% | 778.1 KiB/s |  30.3 KiB |  00m00s
[136/183] libfsverity-0:1.6-4.fc44.ppc6 100% | 501.5 KiB/s |  19.6 KiB |  00m00s
[137/183] libtasn1-0:4.20.0-3.fc44.ppc6 100% |   2.0 MiB/s |  80.4 KiB |  00m00s
[138/183] gpgverify-0:2.2-4.fc44.noarch 100% | 287.9 KiB/s |  11.2 KiB |  00m00s
[139/183] gnupg2-dirmngr-0:2.4.9-4.fc44 100% |   7.5 MiB/s | 313.2 KiB |  00m00s
[140/183] gnupg2-gpg-agent-0:2.4.9-4.fc 100% |   7.1 MiB/s | 304.2 KiB |  00m00s
[141/183] gnupg2-gpgconf-0:2.4.9-4.fc44 100% |   3.0 MiB/s | 125.8 KiB |  00m00s
[142/183] gnupg2-keyboxd-0:2.4.9-4.fc44 100% |   2.5 MiB/s | 103.0 KiB |  00m00s
[143/183] gnupg2-verify-0:2.4.9-4.fc44. 100% |   4.4 MiB/s | 184.6 KiB |  00m00s
[144/183] libassuan-0:2.5.7-5.fc44.ppc6 100% |   1.7 MiB/s |  71.5 KiB |  00m00s
[145/183] libgcrypt-0:1.11.2-1.fc44.ppc 100% |  14.8 MiB/s | 665.1 KiB |  00m00s
[146/183] libgpg-error-0:1.58-2.fc44.pp 100% |   6.2 MiB/s | 259.9 KiB |  00m00s
[147/183] npth-0:1.8-4.fc44.ppc64le     100% | 630.4 KiB/s |  25.2 KiB |  00m00s
[148/183] tpm2-tss-0:4.1.3-9.fc44.ppc64 100% |   9.2 MiB/s | 396.7 KiB |  00m00s
[149/183] gnutls-0:3.8.11-10.fc44.ppc64 100% |  27.0 MiB/s |   1.4 MiB |  00m00s
[150/183] libksba-0:1.6.7-5.fc44.ppc64l 100% |   4.2 MiB/s | 176.0 KiB |  00m00s
[151/183] openldap-0:2.6.10-7.fc44.ppc6 100% |   6.7 MiB/s | 288.8 KiB |  00m00s
[152/183] libusb1-0:1.0.29-5.fc44.ppc64 100% |   2.0 MiB/s |  85.7 KiB |  00m00s
[153/183] libidn2-0:2.3.8-3.fc44.ppc64l 100% |   4.3 MiB/s | 176.9 KiB |  00m00s
[154/183] libunistring-0:1.1-11.fc44.pp 100% |  12.8 MiB/s | 574.5 KiB |  00m00s
[155/183] nettle-0:3.10.1-3.fc44.ppc64l 100% |  10.5 MiB/s | 460.3 KiB |  00m00s
[156/183] cyrus-sasl-lib-0:2.1.28-35.fc 100% |  19.1 MiB/s | 901.5 KiB |  00m00s
[157/183] libevent-0:2.1.12-17.fc44.ppc 100% |   7.0 MiB/s | 292.9 KiB |  00m00s
[158/183] libtool-ltdl-0:2.5.4-10.fc44. 100% |   1.0 MiB/s |  39.5 KiB |  00m00s
[159/183] gdbm-libs-1:1.23-11.fc44.ppc6 100% |   1.6 MiB/s |  62.0 KiB |  00m00s
[160/183] fedora-release-0:44-0.10.noar 100% | 346.3 KiB/s |  13.5 KiB |  00m00s
[161/183] systemd-standalone-sysusers-0 100% |   3.5 MiB/s | 150.3 KiB |  00m00s
[162/183] xxhash-libs-0:0.8.3-4.fc44.pp 100% | 532.8 KiB/s |  37.8 KiB |  00m00s
[163/183] gdb-minimal-0:17.1-2.fc44.ppc 100% |  45.9 MiB/s |   4.9 MiB |  00m00s
[164/183] fedora-release-identity-basic 100% | 190.4 KiB/s |  14.3 KiB |  00m00s
[165/183] libcurl-0:8.18.0-3.fc44.ppc64 100% |  11.1 MiB/s | 490.1 KiB |  00m00s
[166/183] krb5-libs-0:1.21.3-12.fc44.pp 100% |  17.5 MiB/s | 843.6 KiB |  00m00s
[167/183] libbrotli-0:1.2.0-3.fc44.ppc6 100% |   7.7 MiB/s | 393.6 KiB |  00m00s
[168/183] libnghttp2-0:1.68.0-3.fc44.pp 100% |   2.1 MiB/s |  82.6 KiB |  00m00s
[169/183] libnghttp3-0:1.15.0-1.fc44.pp 100% |   1.9 MiB/s |  76.5 KiB |  00m00s
[170/183] libpsl-0:0.21.5-7.fc44.ppc64l 100% |   1.6 MiB/s |  66.4 KiB |  00m00s
[171/183] libssh-0:0.11.3-1.fc44.ppc64l 100% |   6.3 MiB/s | 266.5 KiB |  00m00s
[172/183] ngtcp2-0:1.19.0-2.fc44.ppc64l 100% |   4.0 MiB/s | 166.8 KiB |  00m00s
[173/183] ngtcp2-crypto-ossl-0:1.19.0-2 100% | 682.9 KiB/s |  26.6 KiB |  00m00s
[174/183] keyutils-libs-0:1.6.3-7.fc44. 100% | 831.8 KiB/s |  32.4 KiB |  00m00s
[175/183] libcom_err-0:1.47.3-4.fc44.pp 100% | 666.0 KiB/s |  27.3 KiB |  00m00s
[176/183] libverto-0:0.3.2-12.fc44.ppc6 100% | 546.0 KiB/s |  21.8 KiB |  00m00s
[177/183] publicsuffix-list-dafsa-0:202 100% |   1.5 MiB/s |  60.3 KiB |  00m00s
[178/183] libssh-config-0:0.11.3-1.fc44 100% | 222.2 KiB/s |   9.1 KiB |  00m00s
[179/183] selinux-policy-targeted-0:42. 100% |  50.5 MiB/s |   6.8 MiB |  00m00s
[180/183] policycoreutils-0:3.9-8.fc44. 100% |   2.0 MiB/s | 260.5 KiB |  00m00s
[181/183] selinux-policy-0:42.22-1.fc44 100% | 699.1 KiB/s |  67.8 KiB |  00m00s
[182/183] libselinux-utils-0:3.9-7.fc44 100% |   3.0 MiB/s | 124.4 KiB |  00m00s
[183/183] rpm-plugin-selinux-0:6.0.1-2. 100% | 491.0 KiB/s |  19.2 KiB |  00m00s
--------------------------------------------------------------------------------
[183/183] Total                         100% |   2.2 MiB/s |  72.7 MiB |  00m34s
Running transaction
Importing OpenPGP key 0x6D9F90A6:
 UserID     : "Fedora (44) <fedora-44-primary@fedoraproject.org>"
 Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary
The key was successfully imported.
Importing OpenPGP key 0x6D9F90A6:
 UserID     : "Fedora (44) <fedora-44-primary@fedoraproject.org>"
 Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary
The key was successfully imported.
Importing OpenPGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
Importing OpenPGP key 0xF577861E:
 UserID     : "Fedora (45) <fedora-45-primary@fedoraproject.org>"
 Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary
The key was successfully imported.
[  1/185] Verify package files          100% | 156.0   B/s | 183.0   B |  00m01s
[  2/185] Prepare transaction           100% | 875.0   B/s | 183.0   B |  00m00s
[  3/185] Installing libgcc-0:16.0.1-0. 100% |  70.3 MiB/s | 288.1 KiB |  00m00s
[  4/185] Installing libssh-config-0:0. 100% | 796.9 KiB/s | 816.0   B |  00m00s
[  5/185] Installing publicsuffix-list- 100% |  34.7 MiB/s |  71.1 KiB |  00m00s
[  6/185] Installing fedora-release-ide 100% | 449.2 KiB/s | 920.0   B |  00m00s
[  7/185] Installing fedora-gpg-keys-0: 100% |  11.7 MiB/s | 179.0 KiB |  00m00s
[  8/185] Installing fedora-repos-rawhi 100% |   2.4 MiB/s |   2.4 KiB |  00m00s
[  9/185] Installing fedora-repos-0:44- 100% |   2.8 MiB/s |   5.7 KiB |  00m00s
[ 10/185] Installing fedora-release-com 100% |   6.1 MiB/s |  24.9 KiB |  00m00s
[ 11/185] Installing fedora-release-0:4 100% |   8.6 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.0-28.fc44.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 
[ 12/185] Installing setup-0:2.15.0-28. 100% |  14.6 MiB/s | 730.6 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/185] Installing filesystem-0:3.18- 100% | 718.8 KiB/s | 212.8 KiB |  00m00s
[ 14/185] Installing pkgconf-m4-0:2.3.0 100% |  14.5 MiB/s |  14.8 KiB |  00m00s
[ 15/185] Installing pcre2-syntax-0:10. 100% |  69.4 MiB/s | 284.3 KiB |  00m00s
[ 16/185] Installing gnulib-l10n-0:2024 100% |  49.7 MiB/s | 661.9 KiB |  00m00s
[ 17/185] Installing coreutils-common-0 100% | 105.9 MiB/s |  11.2 MiB |  00m00s
[ 18/185] Installing ncurses-base-0:6.5 100% |  19.2 MiB/s | 353.5 KiB |  00m00s
[ 19/185] Installing bash-0:5.3.9-3.fc4 100% |  82.7 MiB/s |   8.9 MiB |  00m00s
[ 20/185] Installing glibc-common-0:2.4 100% |  27.0 MiB/s |   1.5 MiB |  00m00s
[ 21/185] Installing glibc-gconv-extra- 100% | 122.8 MiB/s |  18.5 MiB |  00m00s
[ 22/185] Installing glibc-0:2.43-1.fc4 100% |  81.1 MiB/s |  11.8 MiB |  00m00s
[ 23/185] Installing ncurses-libs-0:6.5 100% |  93.4 MiB/s |   1.5 MiB |  00m00s
[ 24/185] Installing glibc-minimal-lang 100% | 121.1 KiB/s | 124.0   B |  00m00s
[ 25/185] Installing zlib-ng-compat-0:2 100% |  64.5 MiB/s | 198.1 KiB |  00m00s
[ 26/185] Installing bzip2-libs-0:1.0.8 100% |  44.8 MiB/s | 137.5 KiB |  00m00s
[ 27/185] Installing libgpg-error-0:1.5 100% |  21.1 MiB/s |   1.0 MiB |  00m00s
[ 28/185] Installing libstdc++-0:16.0.1 100% | 122.3 MiB/s |   3.9 MiB |  00m00s
[ 29/185] Installing libassuan-0:2.5.7- 100% |  53.1 MiB/s | 217.6 KiB |  00m00s
[ 30/185] Installing libgcrypt-0:1.11.2 100% | 107.7 MiB/s |   1.5 MiB |  00m00s
[ 31/185] Installing readline-0:8.3-4.f 100% |  87.8 MiB/s | 629.5 KiB |  00m00s
[ 32/185] Installing gmp-1:6.3.0-5.fc44 100% |  96.2 MiB/s | 788.3 KiB |  00m00s
[ 33/185] Installing libuuid-0:2.41.3-1 100% |  34.3 MiB/s |  70.3 KiB |  00m00s
[ 34/185] Installing xz-libs-1:5.8.2-2. 100% |  65.0 MiB/s | 266.3 KiB |  00m00s
[ 35/185] Installing popt-0:1.19-10.fc4 100% |  26.3 MiB/s | 215.2 KiB |  00m00s
[ 36/185] Installing libzstd-0:1.5.7-5. 100% | 109.1 MiB/s |   1.1 MiB |  00m00s
[ 37/185] Installing elfutils-libelf-0: 100% | 109.7 MiB/s |   1.2 MiB |  00m00s
[ 38/185] Installing npth-0:1.8-4.fc44. 100% |  45.9 MiB/s |  94.1 KiB |  00m00s
[ 39/185] Installing libblkid-0:2.41.3- 100% |  86.8 MiB/s | 355.5 KiB |  00m00s
[ 40/185] Installing systemd-libs-0:259 100% | 118.5 MiB/s |   3.0 MiB |  00m00s
[ 41/185] Installing libxcrypt-0:4.5.2- 100% |  66.3 MiB/s | 339.6 KiB |  00m00s
[ 42/185] Installing libsepol-0:3.9-3.f 100% | 104.2 MiB/s |   1.0 MiB |  00m00s
[ 43/185] Installing sqlite-libs-0:3.51 100% | 107.9 MiB/s |   1.9 MiB |  00m00s
[ 44/185] Installing gnupg2-gpgconf-0:2 100% |   7.7 MiB/s | 323.6 KiB |  00m00s
[ 45/185] Installing libattr-0:2.5.2-8. 100% |  33.7 MiB/s |  69.0 KiB |  00m00s
[ 46/185] Installing libacl-0:2.3.2-6.f 100% |  33.4 MiB/s |  68.3 KiB |  00m00s
[ 47/185] Installing pcre2-0:10.47-1.fc 100% | 102.9 MiB/s | 843.2 KiB |  00m00s
[ 48/185] Installing libselinux-0:3.9-7 100% |  65.0 MiB/s | 266.3 KiB |  00m00s
[ 49/185] Installing grep-0:3.12-3.fc44 100% |  19.6 MiB/s |   1.0 MiB |  00m00s
[ 50/185] Installing sed-0:4.9-7.fc44.p 100% |  18.5 MiB/s | 945.2 KiB |  00m00s
[ 51/185] Installing findutils-1:4.10.0 100% |  35.3 MiB/s |   2.0 MiB |  00m00s
[ 52/185] Installing libtasn1-0:4.20.0- 100% |  54.1 MiB/s | 221.7 KiB |  00m00s
[ 53/185] Installing libunistring-0:1.1 100% | 117.0 MiB/s |   1.9 MiB |  00m00s
[ 54/185] Installing libidn2-0:2.3.8-3. 100% |  27.6 MiB/s | 566.3 KiB |  00m00s
[ 55/185] Installing crypto-policies-0: 100% |   9.1 MiB/s | 157.7 KiB |  00m00s
[ 56/185] Installing xz-1:5.8.2-2.fc44. 100% |  24.9 MiB/s |   1.4 MiB |  00m00s
[ 57/185] Installing libmount-0:2.41.3- 100% |  89.4 MiB/s | 549.3 KiB |  00m00s
[ 58/185] Installing gnupg2-verify-0:2. 100% |  10.2 MiB/s | 429.5 KiB |  00m00s
[ 59/185] Installing dwz-0:0.16-3.fc44. 100% |   9.5 MiB/s | 387.8 KiB |  00m00s
[ 60/185] Installing mpfr-0:4.2.2-3.fc4 100% |  89.4 MiB/s | 915.1 KiB |  00m00s
[ 61/185] Installing gawk-0:5.3.2-3.fc4 100% |  44.2 MiB/s |   2.8 MiB |  00m00s
[ 62/185] Installing libksba-0:1.6.7-5. 100% |  86.1 MiB/s | 528.8 KiB |  00m00s
[ 63/185] Installing unzip-0:6.0-69.fc4 100% |  12.5 MiB/s | 536.9 KiB |  00m00s
[ 64/185] Installing file-libs-0:5.46-9 100% | 180.0 MiB/s |  11.9 MiB |  00m00s
[ 65/185] Installing file-0:5.46-9.fc44 100% |   3.5 MiB/s | 141.5 KiB |  00m00s
[ 66/185] Installing diffutils-0:3.12-5 100% |  30.6 MiB/s |   1.7 MiB |  00m00s
[ 67/185] Installing libeconf-0:0.7.9-3 100% |  26.8 MiB/s |  82.4 KiB |  00m00s
[ 68/185] Installing libcap-ng-0:0.9-5. 100% |  52.7 MiB/s | 161.9 KiB |  00m00s
[ 69/185] Installing audit-libs-0:4.1.2 100% |  77.1 MiB/s | 552.7 KiB |  00m00s
[ 70/185] Installing pam-libs-0:1.7.2-1 100% |  56.3 MiB/s | 288.4 KiB |  00m00s
[ 71/185] Installing libcap-0:2.77-2.fc 100% |  11.6 MiB/s | 511.9 KiB |  00m00s
[ 72/185] Installing libsemanage-0:3.9- 100% |  69.3 MiB/s | 425.6 KiB |  00m00s
[ 73/185] Installing libsmartcols-0:2.4 100% |  70.9 MiB/s | 290.4 KiB |  00m00s
[ 74/185] Installing alternatives-0:1.3 100% |   2.4 MiB/s |  91.5 KiB |  00m00s
[ 75/185] Installing lua-libs-0:5.4.8-5 100% |  64.3 MiB/s | 395.1 KiB |  00m00s
[ 76/185] Installing libffi-0:3.5.2-2.f 100% |  68.1 MiB/s | 348.9 KiB |  00m00s
[ 77/185] Installing p11-kit-0:0.25.8-2 100% |  41.8 MiB/s |   2.9 MiB |  00m00s
[ 78/185] Installing p11-kit-trust-0:0. 100% |  11.4 MiB/s | 595.6 KiB |  00m00s
[ 79/185] Installing json-c-0:0.18-8.fc 100% |  45.5 MiB/s | 139.7 KiB |  00m00s
[ 80/185] Installing ngtcp2-0:1.19.0-2. 100% |  79.4 MiB/s | 406.6 KiB |  00m00s
[ 81/185] Installing openssl-libs-1:3.5 100% | 124.8 MiB/s |   9.1 MiB |  00m00s
[ 82/185] Installing coreutils-0:9.9-4. 100% |  77.2 MiB/s |   9.3 MiB |  00m00s
[ 83/185] Installing ca-certificates-0: 100% | 733.1 KiB/s |   2.5 MiB |  00m03s
[ 84/185] Installing gzip-0:1.14-2.fc44 100% |   8.0 MiB/s | 442.9 KiB |  00m00s
[ 85/185] Installing rpm-sequoia-0:1.10 100% | 124.4 MiB/s |   4.9 MiB |  00m00s
[ 86/185] Installing libfsverity-0:1.6- 100% |  33.7 MiB/s |  69.0 KiB |  00m00s
[ 87/185] Installing libevent-0:2.1.12- 100% | 106.0 MiB/s |   1.3 MiB |  00m00s
[ 88/185] Installing ngtcp2-crypto-ossl 100% |  22.1 MiB/s |  68.0 KiB |  00m00s
[ 89/185] Installing util-linux-core-0: 100% |  39.4 MiB/s |   2.5 MiB |  00m00s
[ 90/185] Installing zip-0:3.0-45.fc44. 100% |  19.0 MiB/s | 893.0 KiB |  00m00s
[ 91/185] Installing gnupg2-keyboxd-0:2 100% |  22.9 MiB/s | 234.4 KiB |  00m00s
[ 92/185] Installing libpsl-0:0.21.5-7. 100% |  43.3 MiB/s | 133.1 KiB |  00m00s
[ 93/185] Installing tar-2:1.35-8.fc44. 100% |  47.4 MiB/s |   3.1 MiB |  00m00s
[ 94/185] Installing linkdupes-0:0.7.2- 100% |  19.7 MiB/s | 908.3 KiB |  00m00s
[ 95/185] Installing libselinux-utils-0 100% |  27.1 MiB/s |   1.4 MiB |  00m00s
[ 96/185] Installing liblastlog2-0:2.41 100% |  15.1 MiB/s | 139.2 KiB |  00m00s
[ 97/185] Installing systemd-standalone 100% |   9.2 MiB/s | 394.3 KiB |  00m00s
[ 98/185] Installing rpm-libs-0:6.0.1-2 100% | 101.9 MiB/s |   1.2 MiB |  00m00s
[ 99/185] Installing libusb1-0:1.0.29-5 100% |  17.0 MiB/s | 244.3 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.ppc64le
>>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.ppc64le
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
[100/185] Installing tpm2-tss-0:4.1.3-9 100% | 109.3 MiB/s |   2.4 MiB |  00m00s
[101/185] Installing ima-evm-utils-libs 100% |  30.5 MiB/s |  93.8 KiB |  00m00s
[102/185] Installing gnupg2-gpg-agent-0 100% |  18.4 MiB/s | 977.9 KiB |  00m00s
[103/185] Installing libfdisk-0:2.41.3- 100% |  78.8 MiB/s | 484.0 KiB |  00m00s
[104/185] Installing zstd-0:1.5.7-5.fc4 100% |  12.6 MiB/s | 565.6 KiB |  00m00s
[105/185] Installing libxml2-0:2.12.10- 100% |  41.2 MiB/s |   2.3 MiB |  00m00s
[106/185] Installing nettle-0:3.10.1-3. 100% |  93.8 MiB/s | 960.5 KiB |  00m00s
[107/185] Installing gnutls-0:3.8.11-10 100% | 117.9 MiB/s |   4.0 MiB |  00m00s
[108/185] Installing bzip2-0:1.0.8-23.f 100% |   4.3 MiB/s | 175.4 KiB |  00m00s
[109/185] Installing add-determinism-0: 100% |  42.0 MiB/s |   2.4 MiB |  00m00s
[110/185] Installing cpio-0:2.15-6.fc43 100% |  22.7 MiB/s |   1.2 MiB |  00m00s
[111/185] Installing ed-0:1.22.4-2.fc44 100% |   4.0 MiB/s | 159.3 KiB |  00m00s
[112/185] Installing patch-0:2.8-4.fc44 100% |   6.4 MiB/s | 263.8 KiB |  00m00s
[113/185] Installing librtas-0:2.0.6-6. 100% |  16.7 MiB/s | 307.4 KiB |  00m00s
[114/185] Installing util-linux-0:2.41. 100% |  57.1 MiB/s |   7.0 MiB |  00m00s
[115/185] Installing policycoreutils-0: 100% |  20.4 MiB/s |   1.5 MiB |  00m00s
[116/185] Installing selinux-policy-0:4 100% |   1.1 MiB/s |  33.6 KiB |  00m00s
[117/185] Installing selinux-policy-tar 100% |  50.9 MiB/s |  14.8 MiB |  00m00s
[118/185] Installing build-reproducibil 100% | 757.8 KiB/s |   1.5 KiB |  00m00s
[119/185] Installing jansson-0:2.14-4.f 100% |  51.5 MiB/s | 158.3 KiB |  00m00s
[120/185] Installing lz4-libs-0:1.10.0- 100% |  64.0 MiB/s | 262.1 KiB |  00m00s
[121/185] Installing libarchive-0:3.8.4 100% |  90.5 MiB/s |   1.3 MiB |  00m00s
[122/185] Installing libgomp-0:16.0.1-0 100% |  91.6 MiB/s | 656.6 KiB |  00m00s
[123/185] Installing libpkgconf-0:2.3.0 100% |  43.9 MiB/s | 134.9 KiB |  00m00s
[124/185] Installing pkgconf-0:2.3.0-4. 100% |   2.7 MiB/s | 114.7 KiB |  00m00s
[125/185] Installing pkgconf-pkg-config 100% |  47.9 KiB/s |   1.8 KiB |  00m00s
[126/185] Installing libtool-ltdl-0:2.5 100% |  46.3 MiB/s |  94.9 KiB |  00m00s
[127/185] Installing gdbm-libs-1:1.23-1 100% |  57.4 MiB/s | 235.0 KiB |  00m00s
[128/185] Installing cyrus-sasl-lib-0:2 100% |  47.8 MiB/s |   2.9 MiB |  00m00s
[129/185] Installing openldap-0:2.6.10- 100% |  79.3 MiB/s | 893.4 KiB |  00m00s
[130/185] Installing gnupg2-dirmngr-0:2 100% |  15.8 MiB/s | 840.5 KiB |  00m00s
[131/185] Installing gnupg2-0:2.4.9-4.f 100% |  72.7 MiB/s |   6.8 MiB |  00m00s
[132/185] Installing rpm-sign-libs-0:6. 100% |  33.4 MiB/s |  68.4 KiB |  00m00s
[133/185] Installing gpgverify-0:2.2-4. 100% |   4.6 MiB/s |   9.4 KiB |  00m00s
[134/185] Installing xxhash-libs-0:0.8. 100% |  28.3 MiB/s |  86.9 KiB |  00m00s
[135/185] Installing libbrotli-0:1.2.0- 100% |  92.2 MiB/s |   1.0 MiB |  00m00s
[136/185] Installing libnghttp2-0:1.68. 100% |  64.8 MiB/s | 198.9 KiB |  00m00s
[137/185] Installing libnghttp3-0:1.15. 100% |  50.8 MiB/s | 207.9 KiB |  00m00s
[138/185] Installing keyutils-libs-0:1. 100% |  32.3 MiB/s |  99.3 KiB |  00m00s
[139/185] Installing libcom_err-0:1.47. 100% |  36.5 MiB/s | 112.0 KiB |  00m00s
[140/185] Installing libverto-0:0.3.2-1 100% |  23.0 MiB/s |  70.8 KiB |  00m00s
[141/185] Installing krb5-libs-0:1.21.3 100% | 103.8 MiB/s |   2.9 MiB |  00m00s
[142/185] Installing libssh-0:0.11.3-1. 100% |  87.6 MiB/s | 717.3 KiB |  00m00s
[143/185] Installing libcurl-0:8.18.0-3 100% | 100.8 MiB/s |   1.2 MiB |  00m00s
[144/185] Installing curl-0:8.18.0-3.fc 100% |   9.3 MiB/s | 530.7 KiB |  00m00s
[145/185] Installing rpm-0:6.0.1-2.fc44 100% |  29.7 MiB/s |   2.8 MiB |  00m00s
[146/185] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0   B |  00m00s
[147/185] Installing efi-srpm-macros-0: 100% |  20.1 MiB/s |  41.2 KiB |  00m00s
[148/185] Installing java-srpm-macros-0 100% |   1.1 MiB/s |   1.1 KiB |  00m00s
[149/185] Installing lua-srpm-macros-0: 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[150/185] Installing tree-sitter-srpm-m 100% |   4.5 MiB/s |   9.3 KiB |  00m00s
[151/185] Installing zig-srpm-macros-0: 100% |   1.8 MiB/s |   1.9 KiB |  00m00s
[152/185] Installing filesystem-srpm-ma 100% |  19.0 MiB/s |  38.9 KiB |  00m00s
[153/185] Installing elfutils-default-y 100% | 340.5 KiB/s |   2.0 KiB |  00m00s
[154/185] Installing elfutils-libs-0:0. 100% |  85.6 MiB/s | 876.1 KiB |  00m00s
[155/185] Installing elfutils-debuginfo 100% |   3.4 MiB/s | 145.4 KiB |  00m00s
[156/185] Installing binutils-0:2.45.50 100% | 115.6 MiB/s |  32.8 MiB |  00m00s
[157/185] Installing elfutils-0:0.194-3 100% |  53.9 MiB/s |   3.5 MiB |  00m00s
[158/185] Installing gdb-minimal-0:17.1 100% | 103.0 MiB/s |  16.5 MiB |  00m00s
[159/185] Installing debugedit-0:5.2-6. 100% |   9.0 MiB/s | 385.3 KiB |  00m00s
[160/185] Installing rpm-build-libs-0:6 100% |  64.2 MiB/s | 328.7 KiB |  00m00s
[161/185] Installing rust-srpm-macros-0 100% |   3.1 MiB/s |   6.4 KiB |  00m00s
[162/185] Installing qt6-srpm-macros-0: 100% | 722.7 KiB/s | 740.0   B |  00m00s
[163/185] Installing qt5-srpm-macros-0: 100% | 757.8 KiB/s | 776.0   B |  00m00s
[164/185] Installing perl-srpm-macros-0 100% |   1.1 MiB/s |   1.1 KiB |  00m00s
[165/185] Installing package-notes-srpm 100% |   2.0 MiB/s |   2.0 KiB |  00m00s
[166/185] Installing openblas-srpm-macr 100% | 382.8 KiB/s | 392.0   B |  00m00s
[167/185] Installing ocaml-srpm-macros- 100% |   2.1 MiB/s |   2.1 KiB |  00m00s
[168/185] Installing kernel-srpm-macros 100% |   2.3 MiB/s |   2.3 KiB |  00m00s
[169/185] Installing gnat-srpm-macros-0 100% |   1.2 MiB/s |   1.3 KiB |  00m00s
[170/185] Installing ghc-srpm-macros-0: 100% |   1.0 MiB/s |   1.0 KiB |  00m00s
[171/185] Installing gap-srpm-macros-0: 100% |   2.6 MiB/s |   2.7 KiB |  00m00s
[172/185] Installing fpc-srpm-macros-0: 100% | 410.2 KiB/s | 420.0   B |  00m00s
[173/185] Installing ansible-srpm-macro 100% |  17.7 MiB/s |  36.2 KiB |  00m00s
[174/185] Installing redhat-rpm-config- 100% |  26.5 MiB/s | 189.9 KiB |  00m00s
[175/185] Installing forge-srpm-macros- 100% |  19.7 MiB/s |  40.3 KiB |  00m00s
[176/185] Installing fonts-srpm-macros- 100% |  27.8 MiB/s |  57.0 KiB |  00m00s
[177/185] Installing go-srpm-macros-0:3 100% |  20.5 MiB/s |  63.0 KiB |  00m00s
[178/185] Installing rpm-build-0:6.0.1- 100% |  13.4 MiB/s | 671.6 KiB |  00m00s
[179/185] Installing pyproject-srpm-mac 100% |   1.2 MiB/s |   2.5 KiB |  00m00s
[180/185] Installing R-srpm-macros-0:1. 100% |   2.1 MiB/s |   4.2 KiB |  00m00s
[181/185] Installing python-srpm-macros 100% |  25.9 MiB/s |  52.9 KiB |  00m00s
[182/185] Installing rpm-plugin-selinux 100% |   6.1 MiB/s |  68.8 KiB |  00m00s
[183/185] Installing which-0:2.23-4.fc4 100% |   2.6 MiB/s | 125.4 KiB |  00m00s
[184/185] Installing shadow-utils-2:4.1 100% |  45.2 MiB/s |   4.9 MiB |  00m00s
[185/185] Installing info-0:7.2-7.fc44. 100% |  33.6 KiB/s | 485.8 KiB |  00m14s
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.4-3.fc44.noarch
add-determinism-0.7.2-3.fc44.ppc64le
alternatives-1.33-5.fc44.ppc64le
ansible-srpm-macros-1-20.1.fc44.noarch
audit-libs-4.1.2-4.fc44.ppc64le
bash-5.3.9-3.fc44.ppc64le
binutils-2.45.50-19.fc44.ppc64le
build-reproducibility-srpm-macros-0.7.2-3.fc44.noarch
bzip2-1.0.8-23.fc44.ppc64le
bzip2-libs-1.0.8-23.fc44.ppc64le
ca-certificates-2025.2.80_v9.0.304-5.fc44.noarch
cmake-srpm-macros-3.31.10-5.fc44.noarch
coreutils-9.9-4.fc44.ppc64le
coreutils-common-9.9-4.fc44.ppc64le
cpio-2.15-6.fc43.ppc64le
crypto-policies-20251128-3.git19878fe.fc44.noarch
curl-8.18.0-3.fc44.ppc64le
cyrus-sasl-lib-2.1.28-35.fc44.ppc64le
debugedit-5.2-6.fc44.ppc64le
diffutils-3.12-5.fc44.ppc64le
dwz-0.16-3.fc44.ppc64le
ed-1.22.4-2.fc44.ppc64le
efi-srpm-macros-6-6.fc44.noarch
elfutils-0.194-3.fc44.ppc64le
elfutils-debuginfod-client-0.194-3.fc44.ppc64le
elfutils-default-yama-scope-0.194-3.fc44.noarch
elfutils-libelf-0.194-3.fc44.ppc64le
elfutils-libs-0.194-3.fc44.ppc64le
fedora-gpg-keys-44-0.1.noarch
fedora-release-44-0.10.noarch
fedora-release-common-44-0.10.noarch
fedora-release-identity-basic-44-0.10.noarch
fedora-repos-44-0.1.noarch
fedora-repos-rawhide-44-0.1.noarch
file-5.46-9.fc44.ppc64le
file-libs-5.46-9.fc44.ppc64le
filesystem-3.18-52.fc44.ppc64le
filesystem-srpm-macros-3.18-52.fc44.noarch
findutils-4.10.0-7.fc44.ppc64le
fonts-srpm-macros-5.0.0-2.fc44.noarch
forge-srpm-macros-0.4.0-4.fc44.noarch
fpc-srpm-macros-1.3-16.fc44.noarch
gap-srpm-macros-2-2.fc44.noarch
gawk-5.3.2-3.fc44.ppc64le
gdb-minimal-17.1-2.fc44.ppc64le
gdbm-libs-1.23-11.fc44.ppc64le
ghc-srpm-macros-1.9.2-4.fc44.noarch
glibc-2.43-1.fc44.ppc64le
glibc-common-2.43-1.fc44.ppc64le
glibc-gconv-extra-2.43-1.fc44.ppc64le
glibc-minimal-langpack-2.43-1.fc44.ppc64le
gmp-6.3.0-5.fc44.ppc64le
gnat-srpm-macros-7-2.fc44.noarch
gnulib-l10n-20241231-2.fc44.noarch
gnupg2-2.4.9-4.fc44.ppc64le
gnupg2-dirmngr-2.4.9-4.fc44.ppc64le
gnupg2-gpg-agent-2.4.9-4.fc44.ppc64le
gnupg2-gpgconf-2.4.9-4.fc44.ppc64le
gnupg2-keyboxd-2.4.9-4.fc44.ppc64le
gnupg2-verify-2.4.9-4.fc44.ppc64le
gnutls-3.8.11-10.fc44.ppc64le
go-srpm-macros-3.8.0-2.fc44.noarch
gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b
gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98
gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf
gpgverify-2.2-4.fc44.noarch
grep-3.12-3.fc44.ppc64le
gzip-1.14-2.fc44.ppc64le
ima-evm-utils-libs-1.6.2-8.fc44.ppc64le
info-7.2-7.fc44.ppc64le
jansson-2.14-4.fc44.ppc64le
java-srpm-macros-1-8.fc44.noarch
json-c-0.18-8.fc44.ppc64le
kernel-srpm-macros-1.0-28.fc44.noarch
keyutils-libs-1.6.3-7.fc44.ppc64le
krb5-libs-1.21.3-12.fc44.ppc64le
libacl-2.3.2-6.fc44.ppc64le
libarchive-3.8.4-2.fc44.ppc64le
libassuan-2.5.7-5.fc44.ppc64le
libattr-2.5.2-8.fc44.ppc64le
libblkid-2.41.3-12.fc44.ppc64le
libbrotli-1.2.0-3.fc44.ppc64le
libcap-2.77-2.fc44.ppc64le
libcap-ng-0.9-5.fc44.ppc64le
libcom_err-1.47.3-4.fc44.ppc64le
libcurl-8.18.0-3.fc44.ppc64le
libeconf-0.7.9-3.fc44.ppc64le
libevent-2.1.12-17.fc44.ppc64le
libfdisk-2.41.3-12.fc44.ppc64le
libffi-3.5.2-2.fc44.ppc64le
libfsverity-1.6-4.fc44.ppc64le
libgcc-16.0.1-0.3.fc44.1.ppc64le
libgcrypt-1.11.2-1.fc44.ppc64le
libgomp-16.0.1-0.3.fc44.1.ppc64le
libgpg-error-1.58-2.fc44.ppc64le
libidn2-2.3.8-3.fc44.ppc64le
libksba-1.6.7-5.fc44.ppc64le
liblastlog2-2.41.3-12.fc44.ppc64le
libmount-2.41.3-12.fc44.ppc64le
libnghttp2-1.68.0-3.fc44.ppc64le
libnghttp3-1.15.0-1.fc44.ppc64le
libpkgconf-2.3.0-4.fc44.ppc64le
libpsl-0.21.5-7.fc44.ppc64le
librtas-2.0.6-6.fc44.ppc64le
libselinux-3.9-7.fc44.ppc64le
libselinux-utils-3.9-7.fc44.ppc64le
libsemanage-3.9-5.fc44.ppc64le
libsepol-3.9-3.fc44.ppc64le
libsmartcols-2.41.3-12.fc44.ppc64le
libssh-0.11.3-1.fc44.ppc64le
libssh-config-0.11.3-1.fc44.noarch
libstdc++-16.0.1-0.3.fc44.1.ppc64le
libtasn1-4.20.0-3.fc44.ppc64le
libtool-ltdl-2.5.4-10.fc44.ppc64le
libunistring-1.1-11.fc44.ppc64le
libusb1-1.0.29-5.fc44.ppc64le
libuuid-2.41.3-12.fc44.ppc64le
libverto-0.3.2-12.fc44.ppc64le
libxcrypt-4.5.2-3.fc44.ppc64le
libxml2-2.12.10-6.fc44.ppc64le
libzstd-1.5.7-5.fc44.ppc64le
linkdupes-0.7.2-3.fc44.ppc64le
lua-libs-5.4.8-5.fc44.ppc64le
lua-srpm-macros-1-17.fc44.noarch
lz4-libs-1.10.0-4.fc44.ppc64le
mpfr-4.2.2-3.fc44.ppc64le
ncurses-base-6.5-9.20250614.fc44.noarch
ncurses-libs-6.5-9.20250614.fc44.ppc64le
nettle-3.10.1-3.fc44.ppc64le
ngtcp2-1.19.0-2.fc44.ppc64le
ngtcp2-crypto-ossl-1.19.0-2.fc44.ppc64le
npth-1.8-4.fc44.ppc64le
ocaml-srpm-macros-11-3.fc44.noarch
openblas-srpm-macros-2-21.fc44.noarch
openldap-2.6.10-7.fc44.ppc64le
openssl-libs-3.5.4-2.fc44.ppc64le
p11-kit-0.25.8-2.fc44.ppc64le
p11-kit-trust-0.25.8-2.fc44.ppc64le
package-notes-srpm-macros-0.5-15.fc44.noarch
pam-libs-1.7.2-1.fc44.ppc64le
patch-2.8-4.fc44.ppc64le
pcre2-10.47-1.fc44.1.ppc64le
pcre2-syntax-10.47-1.fc44.1.noarch
perl-srpm-macros-1-61.fc44.noarch
pkgconf-2.3.0-4.fc44.ppc64le
pkgconf-m4-2.3.0-4.fc44.noarch
pkgconf-pkg-config-2.3.0-4.fc44.ppc64le
policycoreutils-3.9-8.fc44.ppc64le
popt-1.19-10.fc44.ppc64le
publicsuffix-list-dafsa-20260116-1.fc44.noarch
pyproject-srpm-macros-1.18.6-2.fc44.noarch
python-srpm-macros-3.14-10.fc44.noarch
qt5-srpm-macros-5.15.18-2.fc44.noarch
qt6-srpm-macros-6.10.1-2.fc44.noarch
readline-8.3-4.fc44.ppc64le
redhat-rpm-config-343-19.fc44.noarch
rpm-6.0.1-2.fc44.ppc64le
rpm-build-6.0.1-2.fc44.ppc64le
rpm-build-libs-6.0.1-2.fc44.ppc64le
rpm-libs-6.0.1-2.fc44.ppc64le
rpm-plugin-selinux-6.0.1-2.fc44.ppc64le
rpm-sequoia-1.10.0-2.fc44.ppc64le
rpm-sign-libs-6.0.1-2.fc44.ppc64le
rust-srpm-macros-28.4-3.fc44.noarch
sed-4.9-7.fc44.ppc64le
selinux-policy-42.22-1.fc44.noarch
selinux-policy-targeted-42.22-1.fc44.noarch
setup-2.15.0-28.fc44.noarch
shadow-utils-4.19.0-5.fc44.ppc64le
sqlite-libs-3.51.2-1.fc44.ppc64le
systemd-libs-259-9.fc44.ppc64le
systemd-standalone-sysusers-259-9.fc44.ppc64le
tar-1.35-8.fc44.ppc64le
tpm2-tss-4.1.3-9.fc44.ppc64le
tree-sitter-srpm-macros-0.4.2-2.fc44.noarch
unzip-6.0-69.fc44.ppc64le
util-linux-2.41.3-12.fc44.ppc64le
util-linux-core-2.41.3-12.fc44.ppc64le
which-2.23-4.fc44.ppc64le
xxhash-libs-0.8.3-4.fc44.ppc64le
xz-5.8.2-2.fc44.ppc64le
xz-libs-5.8.2-2.fc44.ppc64le
zig-srpm-macros-1-8.fc44.noarch
zip-3.0-45.fc44.ppc64le
zlib-ng-compat-2.3.2-3.fc44.ppc64le
zstd-1.5.7-5.fc44.ppc64le
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769040000
Wrote: /builddir/build/SRPMS/samtools-1.23-1.fc44.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1769509459.061935/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-9mcebtp3/samtools/samtools.spec) Config(child) 2 minutes 34 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/samtools-1.23-1.fc44.src.rpm)  Config(fedora-rawhide-ppc64le)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1769509459.061935/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1769509459.061935/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1769509459.061935/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.0.1-2.fc44.ppc64le
  rpm-sequoia-1.10.0-2.fc44.ppc64le
  dnf5-5.3.0.0-7.fc44.ppc64le
  dnf5-plugins-5.3.0.0-7.fc44.ppc64le
Finish: chroot init
Start: build phase for samtools-1.23-1.fc44.src.rpm
Start: build setup for samtools-1.23-1.fc44.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769040000
Wrote: /builddir/build/SRPMS/samtools-1.23-1.fc44.src.rpm
Updating and loading repositories:
 Copr repository                        100% |   3.5 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |   7.4 KiB/s |   3.4 KiB |  00m00s
Repositories loaded.
Package                 Arch    Version                Repository      Size
Installing:
 gcc                    ppc64le 0:16.0.1-0.3.fc44.1    fedora     106.8 MiB
 htslib-devel           ppc64le 0:1.23-1.fc44          copr_base  449.9 KiB
 htslib-tools           ppc64le 0:1.23-1.fc44          copr_base    4.6 MiB
 make                   ppc64le 1:4.4.1-12.fc44        fedora       1.9 MiB
 ncurses-devel          ppc64le 0:6.5-9.20250614.fc44  fedora     893.4 KiB
 perl-FindBin           noarch  0:1.54-521.fc44        fedora       6.8 KiB
 perl-Getopt-Long       noarch  1:2.58-521.fc44        fedora     144.5 KiB
 perl-interpreter       ppc64le 4:5.42.0-521.fc44      fedora     174.4 KiB
 perl-lib               ppc64le 0:0.65-521.fc44        fedora       8.5 KiB
 zlib-ng-compat-devel   ppc64le 0:2.3.2-3.fc44         fedora     107.0 KiB
Installing dependencies:
 annobin-docs           noarch  0:13.05-3.fc44         fedora      99.2 KiB
 annobin-plugin-gcc     ppc64le 0:13.05-3.fc44         fedora     707.7 KiB
 cmake-filesystem       ppc64le 0:3.31.10-5.fc44       fedora       0.0   B
 cpp                    ppc64le 0:16.0.1-0.3.fc44.1    fedora      39.1 MiB
 gcc-plugin-annobin     ppc64le 0:16.0.1-0.3.fc44.1    fedora      68.9 KiB
 glibc-devel            ppc64le 0:2.43-1.fc44          fedora       3.7 MiB
 groff-base             ppc64le 0:1.23.0-12.fc44       fedora       4.5 MiB
 htslib                 ppc64le 0:1.23-1.fc44          copr_base    1.6 MiB
 kernel-headers         ppc64le 0:6.19.0-0.rc7.47.fc44 fedora       6.8 MiB
 libasan                ppc64le 0:16.0.1-0.3.fc44.1    fedora       2.2 MiB
 libatomic              ppc64le 0:16.0.1-0.3.fc44.1    fedora      76.8 KiB
 libmpc                 ppc64le 0:1.3.1-9.fc44         fedora     281.3 KiB
 libubsan               ppc64le 0:16.0.1-0.3.fc44.1    fedora     669.1 KiB
 libxcrypt-devel        ppc64le 0:4.5.2-3.fc44         fedora      31.0 KiB
 ncurses                ppc64le 0:6.5-9.20250614.fc44  fedora     955.9 KiB
 ncurses-c++-libs       ppc64le 0:6.5-9.20250614.fc44  fedora     265.1 KiB
 perl-AutoLoader        noarch  0:5.74-521.fc44        fedora      20.6 KiB
 perl-B                 ppc64le 0:1.89-521.fc44        fedora     545.1 KiB
 perl-Carp              noarch  0:1.54-521.fc44        fedora      46.6 KiB
 perl-Class-Struct      noarch  0:0.68-521.fc44        fedora      25.4 KiB
 perl-Data-Dumper       ppc64le 0:2.191-522.fc44       fedora     135.2 KiB
 perl-Digest            noarch  0:1.20-521.fc44        fedora      35.3 KiB
 perl-Digest-MD5        ppc64le 0:2.59-521.fc44        fedora     103.2 KiB
 perl-DynaLoader        ppc64le 0:1.57-521.fc44        fedora      32.1 KiB
 perl-Encode            ppc64le 4:3.21-521.fc44        fedora       4.8 MiB
 perl-Errno             ppc64le 0:1.38-521.fc44        fedora       8.4 KiB
 perl-Exporter          noarch  0:5.79-521.fc44        fedora      54.3 KiB
 perl-Fcntl             ppc64le 0:1.20-521.fc44        fedora      92.3 KiB
 perl-File-Basename     noarch  0:2.86-521.fc44        fedora      14.0 KiB
 perl-File-Path         noarch  0:2.18-522.fc44        fedora      63.5 KiB
 perl-File-Temp         noarch  1:0.231.200-2.fc44     fedora     163.7 KiB
 perl-File-stat         noarch  0:1.14-521.fc44        fedora      12.5 KiB
 perl-FileHandle        noarch  0:2.05-521.fc44        fedora       9.4 KiB
 perl-Getopt-Std        noarch  0:1.14-521.fc44        fedora      11.2 KiB
 perl-HTTP-Tiny         noarch  0:0.092-2.fc44         fedora     157.6 KiB
 perl-IO                ppc64le 0:1.55-521.fc44        fedora     191.0 KiB
 perl-IO-Socket-IP      noarch  0:0.43-522.fc44        fedora     100.3 KiB
 perl-IO-Socket-SSL     noarch  0:2.098-2.fc44         fedora     723.5 KiB
 perl-IPC-Open3         noarch  0:1.24-521.fc44        fedora      27.7 KiB
 perl-MIME-Base32       noarch  0:1.303-25.fc44        fedora      30.7 KiB
 perl-MIME-Base64       ppc64le 0:3.16-521.fc44        fedora      93.6 KiB
 perl-Net-SSLeay        ppc64le 0:1.94-12.fc44         fedora       1.5 MiB
 perl-POSIX             ppc64le 0:2.23-521.fc44        fedora     328.1 KiB
 perl-PathTools         ppc64le 0:3.94-521.fc44        fedora     223.8 KiB
 perl-Pod-Escapes       noarch  1:1.07-521.fc44        fedora      24.9 KiB
 perl-Pod-Perldoc       noarch  0:3.28.01-522.fc44     fedora     163.7 KiB
 perl-Pod-Simple        noarch  1:3.47-4.fc44          fedora     565.3 KiB
 perl-Pod-Usage         noarch  4:2.05-521.fc44        fedora      86.3 KiB
 perl-Scalar-List-Utils ppc64le 5:1.70-2.fc44          fedora     152.5 KiB
 perl-SelectSaver       noarch  0:1.02-521.fc44        fedora       2.2 KiB
 perl-Socket            ppc64le 4:2.040-3.fc44         fedora     143.8 KiB
 perl-Storable          ppc64le 1:3.37-522.fc44        fedora     243.0 KiB
 perl-Symbol            noarch  0:1.09-521.fc44        fedora       6.8 KiB
 perl-Term-ANSIColor    noarch  0:5.01-522.fc44        fedora      97.5 KiB
 perl-Term-Cap          noarch  0:1.18-521.fc44        fedora      29.3 KiB
 perl-Text-ParseWords   noarch  0:3.31-521.fc44        fedora      13.6 KiB
 perl-Text-Tabs+Wrap    noarch  0:2024.001-521.fc44    fedora      22.6 KiB
 perl-Time-HiRes        ppc64le 4:1.9778-521.fc44      fedora     151.4 KiB
 perl-Time-Local        noarch  2:1.350-521.fc44       fedora      69.0 KiB
 perl-URI               noarch  0:5.34-3.fc44          fedora     268.0 KiB
 perl-base              noarch  0:2.27-521.fc44        fedora      12.6 KiB
 perl-constant          noarch  0:1.33-522.fc44        fedora      26.2 KiB
 perl-if                noarch  0:0.61.000-521.fc44    fedora       5.8 KiB
 perl-libnet            noarch  0:3.15-522.fc44        fedora     289.4 KiB
 perl-libs              ppc64le 4:5.42.0-521.fc44      fedora      12.3 MiB
 perl-locale            noarch  0:1.13-521.fc44        fedora       6.1 KiB
 perl-mro               ppc64le 0:1.29-521.fc44        fedora      81.1 KiB
 perl-overload          noarch  0:1.40-521.fc44        fedora      71.6 KiB
 perl-overloading       noarch  0:0.02-521.fc44        fedora       4.9 KiB
 perl-parent            noarch  1:0.244-521.fc44       fedora      10.3 KiB
 perl-podlators         noarch  1:6.0.2-521.fc44       fedora     317.5 KiB
 perl-vars              noarch  0:1.05-521.fc44        fedora       3.9 KiB

Transaction Summary:
 Installing:        82 packages

Total size of inbound packages is 66 MiB. Need to download 66 MiB.
After this operation, 201 MiB extra will be used (install 201 MiB, remove 0 B).
[ 1/82] ncurses-devel-0:6.5-9.20250614. 100% |  19.5 KiB/s | 590.1 KiB |  00m30s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/n/ncurses-devel-6.5-9.20250614.fc44.ppc64le.rpm [Connection timed out after 30001 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/n/ncurses-devel-6.5-9.20250614.fc44.ppc64le.rpm
[ 2/82] perl-FindBin-0:1.54-521.fc44.no 100% | 120.8 KiB/s |  13.9 KiB |  00m00s
[ 3/82] make-1:4.4.1-12.fc44.ppc64le    100% |  19.7 KiB/s | 602.0 KiB |  00m31s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/m/make-4.4.1-12.fc44.ppc64le.rpm [Connection timed out after 30001 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/m/make-4.4.1-12.fc44.ppc64le.rpm
[ 4/82] perl-Getopt-Long-1:2.58-521.fc4 100% | 662.6 KiB/s |  63.6 KiB |  00m00s
[ 5/82] perl-lib-0:0.65-521.fc44.ppc64l 100% | 362.5 KiB/s |  14.5 KiB |  00m00s
[ 6/82] perl-interpreter-4:5.42.0-521.f 100% |   1.8 MiB/s |  72.0 KiB |  00m00s
[ 7/82] gcc-0:16.0.1-0.3.fc44.1.ppc64le 100% |   1.2 MiB/s |  37.8 MiB |  00m31s
>>> Curl error (28): Timeout was reached for https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/g/gcc-16.0.1-0.3.fc44.1.ppc64le.rpm [Connection timed out after 30001 milliseconds] - https://dl.fedoraproject.org/pub/fedora-secondary/development/rawhide/Everything/ppc64le/os/Packages/g/gcc-16.0.1-0.3.fc44.1.ppc64le.rpm
[ 8/82] zlib-ng-compat-devel-0:2.3.2-3. 100% | 176.5 KiB/s |  37.9 KiB |  00m00s
[ 9/82] cpp-0:16.0.1-0.3.fc44.1.ppc64le 100% |  66.7 MiB/s |  12.7 MiB |  00m00s
[10/82] glibc-devel-0:2.43-1.fc44.ppc64 100% |  13.9 MiB/s | 656.6 KiB |  00m00s
[11/82] libasan-0:16.0.1-0.3.fc44.1.ppc 100% |  11.3 MiB/s | 532.6 KiB |  00m00s
[12/82] htslib-devel-0:1.23-1.fc44.ppc6 100% | 203.1 KiB/s | 106.8 KiB |  00m01s
[13/82] libatomic-0:16.0.1-0.3.fc44.1.p 100% | 859.7 KiB/s |  33.5 KiB |  00m00s
[14/82] libmpc-0:1.3.1-9.fc44.ppc64le   100% |   2.3 MiB/s |  94.9 KiB |  00m00s
[15/82] libubsan-0:16.0.1-0.3.fc44.1.pp 100% |   6.2 MiB/s | 258.2 KiB |  00m00s
[16/82] ncurses-c++-libs-0:6.5-9.202506 100% | 980.6 KiB/s |  39.2 KiB |  00m00s
[17/82] perl-Carp-0:1.54-521.fc44.noarc 100% | 719.6 KiB/s |  28.8 KiB |  00m00s
[18/82] perl-Exporter-0:5.79-521.fc44.n 100% | 770.4 KiB/s |  30.8 KiB |  00m00s
[19/82] perl-File-Basename-0:2.86-521.f 100% | 420.8 KiB/s |  16.8 KiB |  00m00s
[20/82] perl-PathTools-0:3.94-521.fc44. 100% |   2.1 MiB/s |  87.7 KiB |  00m00s
[21/82] perl-libs-4:5.42.0-521.fc44.ppc 100% |  38.1 MiB/s |   2.7 MiB |  00m00s
[22/82] perl-Pod-Usage-4:2.05-521.fc44. 100% |   1.0 MiB/s |  40.7 KiB |  00m00s
[23/82] htslib-tools-0:1.23-1.fc44.ppc6 100% |   1.5 MiB/s | 839.9 KiB |  00m01s
[24/82] perl-Text-ParseWords-0:3.31-521 100% | 401.8 KiB/s |  16.5 KiB |  00m00s
[25/82] perl-base-0:2.27-521.fc44.noarc 100% | 396.9 KiB/s |  15.9 KiB |  00m00s
[26/82] perl-constant-0:1.33-522.fc44.n 100% | 572.5 KiB/s |  22.9 KiB |  00m00s
[27/82] perl-overload-0:1.40-521.fc44.n 100% |   1.1 MiB/s |  45.2 KiB |  00m00s
[28/82] cmake-filesystem-0:3.31.10-5.fc 100% | 342.9 KiB/s |  14.1 KiB |  00m00s
[29/82] libxcrypt-devel-0:4.5.2-3.fc44. 100% | 680.4 KiB/s |  29.9 KiB |  00m00s
[30/82] htslib-0:1.23-1.fc44.ppc64le    100% |   3.2 MiB/s | 652.9 KiB |  00m00s
[31/82] kernel-headers-0:6.19.0-0.rc7.4 100% |   8.2 MiB/s |   1.7 MiB |  00m00s
[32/82] perl-Errno-0:1.38-521.fc44.ppc6 100% |  87.9 KiB/s |  14.5 KiB |  00m00s
[33/82] perl-Scalar-List-Utils-5:1.70-2 100% |   1.0 MiB/s |  77.2 KiB |  00m00s
[34/82] perl-DynaLoader-0:1.57-521.fc44 100% | 623.8 KiB/s |  25.6 KiB |  00m00s
[35/82] perl-Encode-4:3.21-521.fc44.ppc 100% |  20.5 MiB/s |   1.0 MiB |  00m00s
[36/82] perl-Pod-Perldoc-0:3.28.01-522. 100% |   2.1 MiB/s |  86.1 KiB |  00m00s
[37/82] perl-podlators-1:6.0.2-521.fc44 100% |   3.1 MiB/s | 128.5 KiB |  00m00s
[38/82] perl-mro-0:1.29-521.fc44.ppc64l 100% | 746.2 KiB/s |  29.8 KiB |  00m00s
[39/82] perl-overloading-0:0.02-521.fc4 100% | 314.1 KiB/s |  12.6 KiB |  00m00s
[40/82] perl-vars-0:1.05-521.fc44.noarc 100% | 316.0 KiB/s |  12.6 KiB |  00m00s
[41/82] perl-Getopt-Std-0:1.14-521.fc44 100% | 383.7 KiB/s |  15.3 KiB |  00m00s
[42/82] perl-MIME-Base64-0:3.16-521.fc4 100% | 766.0 KiB/s |  30.6 KiB |  00m00s
[43/82] perl-Storable-1:3.37-522.fc44.p 100% |   2.4 MiB/s | 102.4 KiB |  00m00s
[44/82] perl-parent-1:0.244-521.fc44.no 100% | 372.0 KiB/s |  14.9 KiB |  00m00s
[45/82] groff-base-0:1.23.0-12.fc44.ppc 100% |  22.0 MiB/s |   1.1 MiB |  00m00s
[46/82] perl-Fcntl-0:1.20-521.fc44.ppc6 100% | 742.6 KiB/s |  29.7 KiB |  00m00s
[47/82] perl-File-Temp-1:0.231.200-2.fc 100% |   1.5 MiB/s |  59.6 KiB |  00m00s
[48/82] perl-HTTP-Tiny-0:0.092-2.fc44.n 100% |   1.4 MiB/s |  57.2 KiB |  00m00s
[49/82] perl-IO-0:1.55-521.fc44.ppc64le 100% |   2.0 MiB/s |  82.2 KiB |  00m00s
[50/82] perl-IPC-Open3-0:1.24-521.fc44. 100% | 561.3 KiB/s |  23.6 KiB |  00m00s
[51/82] perl-Pod-Simple-1:3.47-4.fc44.n 100% |   5.0 MiB/s | 220.0 KiB |  00m00s
[52/82] perl-Symbol-0:1.09-521.fc44.noa 100% | 330.0 KiB/s |  13.9 KiB |  00m00s
[53/82] perl-POSIX-0:2.23-521.fc44.ppc6 100% |   2.7 MiB/s | 117.3 KiB |  00m00s
[54/82] perl-Term-ANSIColor-0:5.01-522. 100% |   1.1 MiB/s |  47.7 KiB |  00m00s
[55/82] perl-Term-Cap-0:1.18-521.fc44.n 100% | 511.6 KiB/s |  22.0 KiB |  00m00s
[56/82] perl-File-Path-0:2.18-522.fc44. 100% | 881.4 KiB/s |  35.3 KiB |  00m00s
[57/82] perl-IO-Socket-SSL-0:2.098-2.fc 100% |   5.2 MiB/s | 234.7 KiB |  00m00s
[58/82] perl-Net-SSLeay-0:1.94-12.fc44. 100% |   8.0 MiB/s | 386.0 KiB |  00m00s
[59/82] perl-Socket-4:2.040-3.fc44.ppc6 100% |   1.3 MiB/s |  55.6 KiB |  00m00s
[60/82] perl-Time-HiRes-4:1.9778-521.fc 100% |   1.3 MiB/s |  57.7 KiB |  00m00s
[61/82] perl-Time-Local-2:1.350-521.fc4 100% | 841.7 KiB/s |  34.5 KiB |  00m00s
[62/82] perl-File-stat-0:1.14-521.fc44. 100% | 418.1 KiB/s |  16.7 KiB |  00m00s
[63/82] perl-SelectSaver-0:1.02-521.fc4 100% | 277.7 KiB/s |  11.4 KiB |  00m00s
[64/82] perl-Pod-Escapes-1:1.07-521.fc4 100% | 494.8 KiB/s |  19.8 KiB |  00m00s
[65/82] perl-Text-Tabs+Wrap-0:2024.001- 100% | 543.8 KiB/s |  21.8 KiB |  00m00s
[66/82] perl-if-0:0.61.000-521.fc44.noa 100% | 333.2 KiB/s |  13.7 KiB |  00m00s
[67/82] perl-locale-0:1.13-521.fc44.noa 100% | 329.0 KiB/s |  13.2 KiB |  00m00s
[68/82] ncurses-0:6.5-9.20250614.fc44.p 100% |   9.7 MiB/s | 435.7 KiB |  00m00s
[69/82] perl-IO-Socket-IP-0:0.43-522.fc 100% |   1.0 MiB/s |  42.2 KiB |  00m00s
[70/82] perl-URI-0:5.34-3.fc44.noarch   100% |   3.4 MiB/s | 149.2 KiB |  00m00s
[71/82] perl-AutoLoader-0:5.74-521.fc44 100% | 535.9 KiB/s |  20.9 KiB |  00m00s
[72/82] perl-Class-Struct-0:0.68-521.fc 100% | 530.0 KiB/s |  21.7 KiB |  00m00s
[73/82] perl-Data-Dumper-0:2.191-522.fc 100% |   1.4 MiB/s |  58.3 KiB |  00m00s
[74/82] perl-MIME-Base32-0:1.303-25.fc4 100% | 500.5 KiB/s |  20.5 KiB |  00m00s
[75/82] perl-libnet-0:3.15-522.fc44.noa 100% |   2.9 MiB/s | 128.4 KiB |  00m00s
[76/82] perl-Digest-MD5-0:2.59-521.fc44 100% | 855.5 KiB/s |  35.9 KiB |  00m00s
[77/82] perl-B-0:1.89-521.fc44.ppc64le  100% |   3.9 MiB/s | 180.0 KiB |  00m00s
[78/82] perl-FileHandle-0:2.05-521.fc44 100% | 369.7 KiB/s |  15.2 KiB |  00m00s
[79/82] perl-Digest-0:1.20-521.fc44.noa 100% | 591.8 KiB/s |  24.9 KiB |  00m00s
[80/82] annobin-plugin-gcc-0:13.05-3.fc 100% |  14.9 MiB/s | 685.4 KiB |  00m00s
[81/82] gcc-plugin-annobin-0:16.0.1-0.3 100% |   1.0 MiB/s |  40.1 KiB |  00m00s
[82/82] annobin-docs-0:13.05-3.fc44.noa 100% |   2.1 MiB/s |  88.9 KiB |  00m00s
--------------------------------------------------------------------------------
[82/82] Total                           100% |   2.0 MiB/s |  65.9 MiB |  00m32s
Running transaction
[ 1/84] Verify package files            100% |  82.0   B/s |  82.0   B |  00m01s
[ 2/84] Prepare transaction             100% | 573.0   B/s |  82.0   B |  00m00s
[ 3/84] Installing htslib-0:1.23-1.fc44 100% |  97.2 MiB/s |   1.7 MiB |  00m00s
[ 4/84] Installing libmpc-0:1.3.1-9.fc4 100% |  69.1 MiB/s | 282.9 KiB |  00m00s
[ 5/84] Installing cpp-0:16.0.1-0.3.fc4 100% | 112.0 MiB/s |  39.1 MiB |  00m00s
[ 6/84] Installing annobin-docs-0:13.05 100% |  32.7 MiB/s | 100.3 KiB |  00m00s
[ 7/84] Installing ncurses-0:6.5-9.2025 100% |  16.5 MiB/s | 962.5 KiB |  00m00s
[ 8/84] Installing groff-base-0:1.23.0- 100% |  47.5 MiB/s |   4.5 MiB |  00m00s
[ 9/84] Installing perl-Digest-0:1.20-5 100% |  18.1 MiB/s |  37.1 KiB |  00m00s
[10/84] Installing perl-Digest-MD5-0:2. 100% |  34.2 MiB/s | 105.1 KiB |  00m00s
[11/84] Installing perl-FileHandle-0:2. 100% |   9.6 MiB/s |   9.8 KiB |  00m00s
[12/84] Installing perl-B-0:1.89-521.fc 100% |  76.5 MiB/s | 548.5 KiB |  00m00s
[13/84] Installing perl-libnet-0:3.15-5 100% |  41.1 MiB/s | 294.7 KiB |  00m00s
[14/84] Installing perl-Data-Dumper-0:2 100% |  44.6 MiB/s | 137.1 KiB |  00m00s
[15/84] Installing perl-MIME-Base32-0:1 100% |  10.5 MiB/s |  32.2 KiB |  00m00s
[16/84] Installing perl-URI-0:5.34-3.fc 100% |  25.0 MiB/s | 281.8 KiB |  00m00s
[17/84] Installing perl-IO-Socket-IP-0: 100% |  33.3 MiB/s | 102.2 KiB |  00m00s
[18/84] Installing perl-AutoLoader-0:5. 100% |  10.3 MiB/s |  21.0 KiB |  00m00s
[19/84] Installing perl-IO-Socket-SSL-0 100% |  79.0 MiB/s | 727.6 KiB |  00m00s
[20/84] Installing perl-Net-SSLeay-0:1. 100% |  62.3 MiB/s |   1.6 MiB |  00m00s
[21/84] Installing perl-locale-0:1.13-5 100% |   3.2 MiB/s |   6.5 KiB |  00m00s
[22/84] Installing perl-if-0:0.61.000-5 100% |   3.0 MiB/s |   6.2 KiB |  00m00s
[23/84] Installing perl-Text-Tabs+Wrap- 100% |   7.8 MiB/s |  23.9 KiB |  00m00s
[24/84] Installing perl-Pod-Escapes-1:1 100% |   8.4 MiB/s |  25.9 KiB |  00m00s
[25/84] Installing perl-Time-Local-2:1. 100% |  17.2 MiB/s |  70.6 KiB |  00m00s
[26/84] Installing perl-Time-HiRes-4:1. 100% |  30.0 MiB/s | 153.4 KiB |  00m00s
[27/84] Installing perl-File-Path-0:2.1 100% |  21.0 MiB/s |  64.5 KiB |  00m00s
[28/84] Installing perl-Pod-Simple-1:3. 100% |  43.2 MiB/s | 574.9 KiB |  00m00s
[29/84] Installing perl-HTTP-Tiny-0:0.0 100% |  39.0 MiB/s | 159.7 KiB |  00m00s
[30/84] Installing perl-Class-Struct-0: 100% |  12.7 MiB/s |  25.9 KiB |  00m00s
[31/84] Installing perl-IPC-Open3-0:1.2 100% |  13.9 MiB/s |  28.5 KiB |  00m00s
[32/84] Installing perl-File-Temp-1:0.2 100% |  53.9 MiB/s | 165.5 KiB |  00m00s
[33/84] Installing perl-POSIX-0:2.23-52 100% |  64.3 MiB/s | 329.3 KiB |  00m00s
[34/84] Installing perl-Term-Cap-0:1.18 100% |  14.9 MiB/s |  30.6 KiB |  00m00s
[35/84] Installing perl-Term-ANSIColor- 100% |  32.3 MiB/s |  99.2 KiB |  00m00s
[36/84] Installing perl-podlators-1:6.0 100% |   7.1 MiB/s | 321.4 KiB |  00m00s
[37/84] Installing perl-Pod-Perldoc-0:3 100% |   3.8 MiB/s | 169.2 KiB |  00m00s
[38/84] Installing perl-File-stat-0:1.1 100% |   6.4 MiB/s |  13.1 KiB |  00m00s
[39/84] Installing perl-SelectSaver-0:1 100% |   2.6 MiB/s |   2.6 KiB |  00m00s
[40/84] Installing perl-Socket-4:2.040- 100% |  35.6 MiB/s | 145.8 KiB |  00m00s
[41/84] Installing perl-Symbol-0:1.09-5 100% |   3.5 MiB/s |   7.3 KiB |  00m00s
[42/84] Installing perl-Pod-Usage-4:2.0 100% |   2.0 MiB/s |  87.9 KiB |  00m00s
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Warning: skipped OpenPGP checks for 3 packages from repository: copr_base
Complete!
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769040000
Wrote: /builddir/build/SRPMS/samtools-1.23-1.fc44.src.rpm
Updating and loading repositories:
 Copr repository                        100% |   4.0 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |   8.4 KiB/s |   3.4 KiB |  00m00s
Repositories loaded.
Nothing to do.
Package "gcc-16.0.1-0.3.fc44.1.ppc64le" is already installed.
Package "htslib-devel-1.23-1.fc44.ppc64le" is already installed.
Package "htslib-tools-1.23-1.fc44.ppc64le" is already installed.
Package "make-1:4.4.1-12.fc44.ppc64le" is already installed.
Package "ncurses-devel-6.5-9.20250614.fc44.ppc64le" is already installed.
Package "perl-FindBin-1.54-521.fc44.noarch" is already installed.
Package "perl-Getopt-Long-1:2.58-521.fc44.noarch" is already installed.
Package "perl-lib-0.65-521.fc44.ppc64le" is already installed.
Package "perl-interpreter-4:5.42.0-521.fc44.ppc64le" is already installed.
Package "zlib-ng-compat-devel-2.3.2-3.fc44.ppc64le" is already installed.

Finish: build setup for samtools-1.23-1.fc44.src.rpm
Start: rpmbuild samtools-1.23-1.fc44.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1769040000
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.0mXv89
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.rySUZO
+ umask 022
+ cd /builddir/build/BUILD/samtools-1.23-build
+ cd /builddir/build/BUILD/samtools-1.23-build
+ rm -rf samtools-1.23
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/samtools-1.23.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd samtools-1.23
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm -f INSTALL
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.A9OBo6
+ umask 022
+ cd /builddir/build/BUILD/samtools-1.23-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.23
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.23/configure
+ diff -u ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ mv ./htslib-1.23/configure.backup ./htslib-1.23/configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.23/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./htslib-1.23/config.guess
++ basename ./htslib-1.23/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./htslib-1.23/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './htslib-1.23/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.23/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./htslib-1.23/config.sub
++ basename ./htslib-1.23/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./htslib-1.23/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './htslib-1.23/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=ppc64le-redhat-linux --host=ppc64le-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  ' --prefix=/usr --with-htslib=system
checking for gawk... gawk
checking for ppc64le-redhat-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for gcc option to enable large file support... none needed
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking for NcursesW wide-character library... yes
checking for working ncursesw/curses.h... yes
checking for library containing cbreak... none required
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
+ /usr/bin/make -O -j5 V=1 VERBOSE=1
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_aux.o bam_aux.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_index.o bam_index.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_cat.o bam_cat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_md.o bam_md.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_plbuf.o bam_plbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_reheader.o bam_reheader.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_fastq.o bam_fastq.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_plcmd.o bam_plcmd.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sam_view.o sam_view.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_rmdupse.o bam_rmdupse.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_color.o bam_color.c
echo '#define SAMTOOLS_VERSION "1.23"' > version.h
echo '#define SAMTOOLS_CC "gcc"' >> version.h
echo '#define SAMTOOLS_CPPFLAGS ""' >> version.h
echo '#define SAMTOOLS_CFLAGS "-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection"' >> version.h
echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  "' >> version.h
echo '#define SAMTOOLS_HTSDIR ""' >> version.h
echo '#define SAMTOOLS_LIBS ""' >> version.h
echo '#define SAMTOOLS_CURSES_LIB "-lncursesw"' >> version.h
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_rmdup.o bam_rmdup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_stat.o bam_stat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam2bcf.o bam2bcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o cut_target.o cut_target.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sample.o sample.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_mate.o bam_mate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o coverage.o coverage.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o padding.o padding.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bedcov.o bedcov.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam2depth.o bam2depth.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o phase.o phase.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o faidx.o faidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o dict.o dict.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_flags.o bam_flags.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o stats_isize.o stats_isize.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bamshuf.o bamshuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_tview.o bam_tview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_tview_curses.o bam_tview_curses.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_split.o bam_split.c
bam_split.c: In function ‘prep_sam_file’:
bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  379 |     char *dirsep = strrchr(opts->merged_input_name, '/');
      |                    ^~~~~~~
bam_split.c: In function ‘init’:
bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  641 |     char* dirsep = strrchr(opts->merged_input_name, '/');
      |                    ^~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_quickcheck.o bam_quickcheck.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_tview_html.o bam_tview_html.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_lpileup.o bam_lpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o tmp_file.o tmp_file.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_addrprg.o bam_addrprg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_sort.o bam_sort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o stats.o stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_import.o bam_import.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_ampliconclip.o bam_ampliconclip.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_samples.o bam_samples.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o consensus_pileup.o consensus_pileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o reference.o reference.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o reset.o reset.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o amplicon_stats.o amplicon_stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o cram_size.o cram_size.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_markdup.o bam_markdup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sam_opts.o sam_opts.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sam_utils.o sam_utils.c
sam_utils.c: In function ‘auto_index’:
sam_utils.c:122:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  122 |     char *delim = strstr(fn, HTS_IDX_DELIM);
      |                   ^~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam.o bam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_consensus.o bam_consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_checksum.o bam_checksum.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DMAQ_LONGREADS -I.  -I./lz4  -c -o misc/maq2sam-long.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bedidx.o bedidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/md5sum-lite.o misc/md5sum-lite.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/maq2sam-short.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/md5fa.o misc/md5fa.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/test.o test/test.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/ace2sam.o misc/ace2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/wgsim.o misc/wgsim.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_count_rg.o test/split/test_count_rg.c
In file included from test/split/test_count_rg.c:27:
test/split/../../bam_split.c: In function ‘prep_sam_file’:
test/split/../../bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  379 |     char *dirsep = strrchr(opts->merged_input_name, '/');
      |                    ^~~~~~~
test/split/../../bam_split.c: In function ‘init’:
test/split/../../bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  641 |     char* dirsep = strrchr(opts->merged_input_name, '/');
      |                    ^~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o lz4/lz4.o lz4/lz4.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c
In file included from test/split/test_expand_format_string.c:27:
test/split/../../bam_split.c: In function ‘prep_sam_file’:
test/split/../../bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  379 |     char *dirsep = strrchr(opts->merged_input_name, '/');
      |                    ^~~~~~~
test/split/../../bam_split.c: In function ‘init’:
test/split/../../bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  641 |     char* dirsep = strrchr(opts->merged_input_name, '/');
      |                    ^~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/vcf-miniview.o test/vcf-miniview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bamtk.o bamtk.c
ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o bam.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_parse_args.o test/split/test_parse_args.c
In file included from test/split/test_parse_args.c:27:
test/split/../../bam_split.c: In function ‘prep_sam_file’:
test/split/../../bam_split.c:379:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  379 |     char *dirsep = strrchr(opts->merged_input_name, '/');
      |                    ^~~~~~~
test/split/../../bam_split.c: In function ‘init’:
test/split/../../bam_split.c:641:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
  641 |     char* dirsep = strrchr(opts->merged_input_name, '/');
      |                    ^~~~~~~
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o misc/maq2sam-long misc/maq2sam-long.o -lz 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o misc/maq2sam-short misc/maq2sam-short.o -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o misc/ace2sam misc/ace2sam.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o misc/md5fa misc/md5fa.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o misc/wgsim misc/wgsim.o -lm -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/vcf-miniview test/vcf-miniview.o -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz  -lpthread
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz  -lpthread
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o samtools bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o reference.o reset.o cram_size.o bam_checksum.o ./lz4/lz4.o libst.a -lhts -lncursesw -lm -lz  -lpthread
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.iEp0jl
+ umask 022
+ cd /builddir/build/BUILD/samtools-1.23-build
+ '[' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/samtools-1.23-build/BUILDROOT
++ dirname /builddir/build/BUILD/samtools-1.23-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/samtools-1.23-build
+ mkdir /builddir/build/BUILD/samtools-1.23-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.23
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/samtools-1.23-build/BUILDROOT 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/share/man/man1
/usr/bin/install -p samtools /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin
/usr/bin/install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin
/usr/bin/install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin
/usr/bin/install -p -m 644 doc/samtools*.1 misc/wgsim.1 /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/share/man/man1
++ grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/ace2sam /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/blast2sam.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/bowtie2sam.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/export2sam.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/fasta-sanitize.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/interpolate_sam.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/maq2sam-long /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/maq2sam-short /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/md5fa /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/md5sum-lite /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/novo2sam.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/plot-ampliconstats /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/plot-bamstats /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/psl2sam.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/sam2vcf.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/samtools /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/samtools.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/seq_cache_populate.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/soap2sam.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/wgsim /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/wgsim_eval.pl /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/zoom2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/blast2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/bowtie2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/export2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/fasta-sanitize.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/interpolate_sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/novo2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/plot-ampliconstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/plot-bamstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/psl2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/sam2vcf.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/samtools.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/seq_cache_populate.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/soap2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/wgsim_eval.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/bin/zoom2sam.pl
+ /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 1.23-1.fc44 --unique-debug-suffix -1.23-1.fc44.ppc64le --unique-debug-src-base samtools-1.23-1.fc44.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/samtools-1.23-build/samtools-1.23
find-debuginfo: starting
Extracting debug info from 7 files
DWARF-compressing 7 files
sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/samtools-1.23-1.fc44.ppc64le
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j5
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j5 /builddir/build/BUILD/samtools-1.23-build/BUILDROOT
Scanned 16 directories and 148 files,
    processed 43 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr
Scanned 15 directories and 148 files,
    considered 148 files, read 6 files, linked 0 files, 0 errors
    sum of sizes of linked files: 0 bytes
Reading /builddir/build/BUILD/samtools-1.23-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.71HLKJ
+ umask 022
+ cd /builddir/build/BUILD/samtools-1.23-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.23
+ ldd samtools
+ grep -E -e '/lib(64)?/libhts\.so\.' -e '/lib64/lp64d/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x00007fffa1830000)
+ make test
test/split/test_count_rg
test/split/test_expand_format_string
test/split/test_filter_header_rg
test/split/test_parse_args
REF_PATH=: test/test.pl --exec bgzip= ${TEST_OPTS:-}
test_reference:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reference test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reference -e test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reference -r 17:1000-1500 test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reference -r 17:1000-1500 -e test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reference -@ 2 test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reference -@ 2 -e test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reference -@ 2 -r 17:1000-1500 test/reference/mpileup.1.tmp.cram
.. ok

test_reference:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reference -@ 2 -r 17:1000-1500 -e test/reference/mpileup.1.tmp.cram
.. ok

bgzip -c -b 65272 -s 5 /tmp/uv8k5VIgJi/bgzip.dat.gz
.. ok

bgzip -c -b 979200 -s 6 /tmp/uv8k5VIgJi/bgzip.dat.gz
.. ok

bgzip -c -b 652804 -s 6 /tmp/uv8k5VIgJi/bgzip.dat.gz
.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools faidx /tmp/uv8k5VIgJi/faidx.fa 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools faidx /tmp/uv8k5VIgJi/faidx.fa.gz 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools faidx /tmp/uv8k5VIgJi/faidx.fa 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools faidx /tmp/uv8k5VIgJi/faidx.fa.gz 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools faidx /tmp/uv8k5VIgJi/faidx.fa 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools faidx /tmp/uv8k5VIgJi/faidx.fa.gz 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools faidx /tmp/uv8k5VIgJi/faidx.fa 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools faidx /tmp/uv8k5VIgJi/faidx.fa.gz 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fqidx /tmp/uv8k5VIgJi/fqidx.fq 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fqidx /tmp/uv8k5VIgJi/fqidx.fq.gz 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fqidx /tmp/uv8k5VIgJi/fqidx.fq 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fqidx /tmp/uv8k5VIgJi/fqidx.fq.gz 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fqidx /tmp/uv8k5VIgJi/fqidx.fq 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fqidx /tmp/uv8k5VIgJi/fqidx.fq.gz 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fqidx /tmp/uv8k5VIgJi/fqidx.fq 1:99998-100007
.. ok

.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fqidx /tmp/uv8k5VIgJi/fqidx.fq.gz 1:99998-100007
.. ok

.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/dict.fa
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /tmp/uv8k5VIgJi/dict.fa.gz
.. ok

test_dict:
	cat /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/dict.fa | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools dict -AH < /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/dict.alias.fa
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools dict -H -l /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/dict.alt < /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/dict.alias.fa
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view /tmp/uv8k5VIgJi/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view /tmp/uv8k5VIgJi/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -X /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /tmp/uv8k5VIgJi/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -X /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /tmp/uv8k5VIgJi/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam.bai /tmp/uv8k5VIgJi/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -X /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /tmp/uv8k5VIgJi/test_input_1_b_opt.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index -M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam && cat /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -X /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index -c /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.bam /tmp/uv8k5VIgJi/auto_indexed.csi && cat /tmp/uv8k5VIgJi/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.cram /tmp/uv8k5VIgJi/auto_indexed.crai && cat /tmp/uv8k5VIgJi/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index -c /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.sam /tmp/uv8k5VIgJi/auto_indexed.csi && cat /tmp/uv8k5VIgJi/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -@ 2 /tmp/uv8k5VIgJi/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -@ 2 /tmp/uv8k5VIgJi/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index -@ 2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /tmp/uv8k5VIgJi/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /tmp/uv8k5VIgJi/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam.bai /tmp/uv8k5VIgJi/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /tmp/uv8k5VIgJi/test_input_1_b_opt.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index -@ 2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index -@ 2 -M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam && cat /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.bam /tmp/uv8k5VIgJi/auto_indexed.csi && cat /tmp/uv8k5VIgJi/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index -@ 2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.cram /tmp/uv8k5VIgJi/auto_indexed.crai && cat /tmp/uv8k5VIgJi/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.sam /tmp/uv8k5VIgJi/auto_indexed.csi && cat /tmp/uv8k5VIgJi/auto_indexed.csi
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools mpileup -b /tmp/uv8k5VIgJi/mpileup.bam.list -f /tmp/uv8k5VIgJi/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools mpileup -b /tmp/uv8k5VIgJi/mpileup.cram.list -f /tmp/uv8k5VIgJi/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools mpileup -b /tmp/uv8k5VIgJi/mpileup.bam.urllist -f /tmp/uv8k5VIgJi/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools mpileup -b /tmp/uv8k5VIgJi/mpileup.cram.urllist -f /tmp/uv8k5VIgJi/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools mpileup -B --ff 0x14 -f /tmp/uv8k5VIgJi/mpileup.ref.fa.gz -r17:1050-1060 /tmp/uv8k5VIgJi/mpileup.1.bam | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools mpileup -B --ff 0x14 -f /tmp/uv8k5VIgJi/mpileup.ref.fa.gz -r17:1050-1060 /tmp/uv8k5VIgJi/mpileup.1.cram | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools mpileup /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/mpileup/overlap.bam | grep 128814202
test/test.pl: no IO::Pty module or can't open pty; skipping usage tests
.. ok

test_usage:
	samtools
test_view:
	Generating test data file .................. done
	1: SAM -> BAM -> SAM                                        .. ok

	2: SAM -> uncompressed BAM                                  .. ok

	3: uncompressed BAM -> SAM and compare                      .. ok

	4: SAM -> fast compressed BAM                               .. ok

	5: fast compressed BAM -> SAM and compare                   .. ok

	6: SAM -> CRAM -> SAM (UR header tags)                      .. ok

	7: SAM -> CRAM -> SAM (M5 header tags)                      .. ok

	8: BAM -> CRAM with UR -> SAM                               .. ok

	9: SAM -> BAM (M5 header tags)                              .. ok

	10: SAM -> BAM -> CRAM -> SAM (M5 header tags)              .. ok

	11: CRAM -> BAM with UR                                     .. ok

	12: CRAM -> BAM with M5                                     .. ok

	13: SAM -> SAM via stdout                                   .. ok

	14: SAM -> BAM via stdout                                   .. ok

	15: SAM -> CRAM via stdout                                  .. ok

	16: SAM from stdin -> SAM                                   .. ok

	17: BAM from stdin -> SAM                                   .. ok

	18: CRAM from stdin -> SAM                                  .. ok

	19: samtools view -H (SAM input)                            .. ok

	20: samtools view -H (BAM input)                            .. ok

	21: samtools view -H (CRAM input)                           .. ok

	22: No headers (SAM input)                                  .. ok

	23: No headers (BAM input)                                  .. ok

	24: No headers (CRAM input)                                 .. ok

	25: Filter -f 128 (SAM input)                               .. ok

	26: Count -f 128 (SAM input)                                .. ok

	27: Filter -f 128 (BAM input)                               .. ok

	28: Count -f 128 (BAM input)                                .. ok

	29: Filter -f 128 (CRAM input)                              .. ok

	30: Count -f 128 (CRAM input)                               .. ok

	31: Filter -F 128 (SAM input)                               .. ok

	32: Count -F 128 (SAM input)                                .. ok

	33: Filter -F 128 (BAM input)                               .. ok

	34: Count -F 128 (BAM input)                                .. ok

	35: Filter -F 128 (CRAM input)                              .. ok

	36: Count -F 128 (CRAM input)                               .. ok

	37: Filter -F 128 -f 2 (SAM input)                          .. ok

	38: Count -F 128 -f 2 (SAM input)                           .. ok

	39: Filter -F 128 -f 2 (BAM input)                          .. ok

	40: Count -F 128 -f 2 (BAM input)                           .. ok

	41: Filter -F 128 -f 2 (CRAM input)                         .. ok

	42: Count -F 128 -f 2 (CRAM input)                          .. ok

	43: Filter -r grp2 (SAM input)                              .. ok

	44: Count -r grp2 (SAM input)                               .. ok

	45: Filter -r grp2 (BAM input)                              .. ok

	46: Count -r grp2 (BAM input)                               .. ok

	47: Filter -r grp2 (CRAM input)                             .. ok

	48: Count -r grp2 (CRAM input)                              .. ok

	49: Filter -R /tmp/uv8k5VIgJi/view.001.fogn (SAM input)     .. ok

	50: Count -R /tmp/uv8k5VIgJi/view.001.fogn (SAM input)      .. ok

	51: Filter -R /tmp/uv8k5VIgJi/view.001.fogn (BAM input)     .. ok

	52: Count -R /tmp/uv8k5VIgJi/view.001.fogn (BAM input)      .. ok

	53: Filter -R /tmp/uv8k5VIgJi/view.001.fogn (CRAM input)    .. ok

	54: Count -R /tmp/uv8k5VIgJi/view.001.fogn (CRAM input)     .. ok

	55: Filter -R /tmp/uv8k5VIgJi/view.001.fogn -r grp2 (SAM input).. ok

	56: Count -R /tmp/uv8k5VIgJi/view.001.fogn -r grp2 (SAM input).. ok

	57: Filter -R /tmp/uv8k5VIgJi/view.001.fogn -r grp2 (BAM input).. ok

	58: Count -R /tmp/uv8k5VIgJi/view.001.fogn -r grp2 (BAM input).. ok

	59: Filter -R /tmp/uv8k5VIgJi/view.001.fogn -r grp2 (CRAM input).. ok

	60: Count -R /tmp/uv8k5VIgJi/view.001.fogn -r grp2 (CRAM input).. ok

	61: Filter -r grp2 -R /tmp/uv8k5VIgJi/view.001.fogn (SAM input).. ok

	62: Count -r grp2 -R /tmp/uv8k5VIgJi/view.001.fogn (SAM input).. ok

	63: Filter -r grp2 -R /tmp/uv8k5VIgJi/view.001.fogn (BAM input).. ok

	64: Count -r grp2 -R /tmp/uv8k5VIgJi/view.001.fogn (BAM input).. ok

	65: Filter -r grp2 -R /tmp/uv8k5VIgJi/view.001.fogn (CRAM input).. ok

	66: Count -r grp2 -R /tmp/uv8k5VIgJi/view.001.fogn (CRAM input).. ok

	67: Filter -N /tmp/uv8k5VIgJi/view.001.forn (SAM input)     .. ok

	68: Count -N /tmp/uv8k5VIgJi/view.001.forn (SAM input)      .. ok

	69: Filter -N /tmp/uv8k5VIgJi/view.001.forn (BAM input)     .. ok

	70: Count -N /tmp/uv8k5VIgJi/view.001.forn (BAM input)      .. ok

	71: Filter -N /tmp/uv8k5VIgJi/view.001.forn (CRAM input)    .. ok

	72: Count -N /tmp/uv8k5VIgJi/view.001.forn (CRAM input)     .. ok

	73: Filter -d BC (SAM input)                                .. ok

	74: Count -d BC (SAM input)                                 .. ok

	75: Filter -d BC (BAM input)                                .. ok

	76: Count -d BC (BAM input)                                 .. ok

	77: Filter -d BC (CRAM input)                               .. ok

	78: Count -d BC (CRAM input)                                .. ok

	79: Filter -d BC:TGCA (SAM input)                           .. ok

	80: Count -d BC:TGCA (SAM input)                            .. ok

	81: Filter -d BC:TGCA (BAM input)                           .. ok

	82: Count -d BC:TGCA (BAM input)                            .. ok

	83: Filter -d BC:TGCA (CRAM input)                          .. ok

	84: Count -d BC:TGCA (CRAM input)                           .. ok

	85: Filter -D BC:/tmp/uv8k5VIgJi/view.001.fobc (SAM input)  .. ok

	86: Count -D BC:/tmp/uv8k5VIgJi/view.001.fobc (SAM input)   .. ok

	87: Filter -D BC:/tmp/uv8k5VIgJi/view.001.fobc (BAM input)  .. ok

	88: Count -D BC:/tmp/uv8k5VIgJi/view.001.fobc (BAM input)   .. ok

	89: Filter -D BC:/tmp/uv8k5VIgJi/view.001.fobc (CRAM input) .. ok

	90: Count -D BC:/tmp/uv8k5VIgJi/view.001.fobc (CRAM input)  .. ok

	91: Filter -D BC:/tmp/uv8k5VIgJi/view.001.fobc -d BC:TGCA (SAM input).. ok

	92: Count -D BC:/tmp/uv8k5VIgJi/view.001.fobc -d BC:TGCA (SAM input).. ok

	93: Filter -D BC:/tmp/uv8k5VIgJi/view.001.fobc -d BC:TGCA (BAM input).. ok

	94: Count -D BC:/tmp/uv8k5VIgJi/view.001.fobc -d BC:TGCA (BAM input).. ok

	95: Filter -D BC:/tmp/uv8k5VIgJi/view.001.fobc -d BC:TGCA (CRAM input).. ok

	96: Count -D BC:/tmp/uv8k5VIgJi/view.001.fobc -d BC:TGCA (CRAM input).. ok

	97: Filter -d BC:TGCA -D BC:/tmp/uv8k5VIgJi/view.001.fobc (SAM input).. ok

	98: Count -d BC:TGCA -D BC:/tmp/uv8k5VIgJi/view.001.fobc (SAM input).. ok

	99: Filter -d BC:TGCA -D BC:/tmp/uv8k5VIgJi/view.001.fobc (BAM input).. ok

	100: Count -d BC:TGCA -D BC:/tmp/uv8k5VIgJi/view.001.fobc (BAM input).. ok

	101: Filter -d BC:TGCA -D BC:/tmp/uv8k5VIgJi/view.001.fobc (CRAM input).. ok

	102: Count -d BC:TGCA -D BC:/tmp/uv8k5VIgJi/view.001.fobc (CRAM input).. ok

	103: Filter -D RG:/tmp/uv8k5VIgJi/view.001.fogn (SAM input) .. ok

	104: Count -D RG:/tmp/uv8k5VIgJi/view.001.fogn (SAM input)  .. ok

	105: Filter -D RG:/tmp/uv8k5VIgJi/view.001.fogn (BAM input) .. ok

	106: Count -D RG:/tmp/uv8k5VIgJi/view.001.fogn (BAM input)  .. ok

	107: Filter -D RG:/tmp/uv8k5VIgJi/view.001.fogn (CRAM input).. ok

	108: Count -D RG:/tmp/uv8k5VIgJi/view.001.fogn (CRAM input) .. ok

	109: Filter -d NE:TGCA (SAM input)                          .. ok

	110: Count -d NE:TGCA (SAM input)                           .. ok

	111: Filter -d NE:TGCA (BAM input)                          .. ok

	112: Count -d NE:TGCA (BAM input)                           .. ok

	113: Filter -d NE:TGCA (CRAM input)                         .. ok

	114: Count -d NE:TGCA (CRAM input)                          .. ok

	115: Filter -d TGCA (SAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -o /tmp/uv8k5VIgJi/view.test115.sam -h -d TGCA /tmp/uv8k5VIgJi/view.001.sam --no-PG


.. expected failure

	116: Count -d TGCA (SAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -c -d TGCA /tmp/uv8k5VIgJi/view.001.sam --no-PG


.. expected failure

	117: Filter -d TGCA (BAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -o /tmp/uv8k5VIgJi/view.test117.sam -h -d TGCA /tmp/uv8k5VIgJi/view.test001.bam --no-PG


.. expected failure

	118: Count -d TGCA (BAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -c -d TGCA /tmp/uv8k5VIgJi/view.test001.bam --no-PG


.. expected failure

	119: Filter -d TGCA (CRAM input)                            samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -o /tmp/uv8k5VIgJi/view.test119.sam -h -d TGCA /tmp/uv8k5VIgJi/view.test006.cram --no-PG


.. expected failure

	120: Count -d TGCA (CRAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -c -d TGCA /tmp/uv8k5VIgJi/view.test006.cram --no-PG


.. expected failure

	121: Filter -D BClong:/tmp/uv8k5VIgJi/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/uv8k5VIgJi/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -o /tmp/uv8k5VIgJi/view.test121.sam -h -D BClong:/tmp/uv8k5VIgJi/view.001.fobc /tmp/uv8k5VIgJi/view.001.sam --no-PG


.. expected failure

	122: Count -D BClong:/tmp/uv8k5VIgJi/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/uv8k5VIgJi/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -c -D BClong:/tmp/uv8k5VIgJi/view.001.fobc /tmp/uv8k5VIgJi/view.001.sam --no-PG


.. expected failure

	123: Filter -D BClong:/tmp/uv8k5VIgJi/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/uv8k5VIgJi/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -o /tmp/uv8k5VIgJi/view.test123.sam -h -D BClong:/tmp/uv8k5VIgJi/view.001.fobc /tmp/uv8k5VIgJi/view.test001.bam --no-PG


.. expected failure

	124: Count -D BClong:/tmp/uv8k5VIgJi/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/uv8k5VIgJi/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -c -D BClong:/tmp/uv8k5VIgJi/view.001.fobc /tmp/uv8k5VIgJi/view.test001.bam --no-PG


.. expected failure

	125: Filter -D BClong:/tmp/uv8k5VIgJi/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/uv8k5VIgJi/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -o /tmp/uv8k5VIgJi/view.test125.sam -h -D BClong:/tmp/uv8k5VIgJi/view.001.fobc /tmp/uv8k5VIgJi/view.test006.cram --no-PG


.. expected failure

	126: Count -D BClong:/tmp/uv8k5VIgJi/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/uv8k5VIgJi/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -c -D BClong:/tmp/uv8k5VIgJi/view.001.fobc /tmp/uv8k5VIgJi/view.test006.cram --no-PG


.. expected failure

	127: Filter -d BC:ACGT -d RG:grp2 (SAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -o /tmp/uv8k5VIgJi/view.test127.sam -h -d BC:ACGT -d RG:grp2 /tmp/uv8k5VIgJi/view.001.sam --no-PG


.. expected failure

	128: Count -d BC:ACGT -d RG:grp2 (SAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/uv8k5VIgJi/view.001.sam --no-PG


.. expected failure

	129: Filter -d BC:ACGT -d RG:grp2 (BAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -o /tmp/uv8k5VIgJi/view.test129.sam -h -d BC:ACGT -d RG:grp2 /tmp/uv8k5VIgJi/view.test001.bam --no-PG


.. expected failure

	130: Count -d BC:ACGT -d RG:grp2 (BAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/uv8k5VIgJi/view.test001.bam --no-PG


.. expected failure

	131: Filter -d BC:ACGT -d RG:grp2 (CRAM input)              samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -o /tmp/uv8k5VIgJi/view.test131.sam -h -d BC:ACGT -d RG:grp2 /tmp/uv8k5VIgJi/view.test006.cram --no-PG


.. expected failure

	132: Count -d BC:ACGT -d RG:grp2 (CRAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/uv8k5VIgJi/view.test006.cram --no-PG


.. expected failure

	133: Filter -d NM:13 (SAM input)                            .. ok

	134: Count -d NM:13 (SAM input)                             .. ok

	135: Filter -d NM:13 (BAM input)                            .. ok

	136: Count -d NM:13 (BAM input)                             .. ok

	137: Filter -d NM:13 (CRAM input)                           .. ok

	138: Count -d NM:13 (CRAM input)                            .. ok

	139: Filter -d ab:z (SAM input)                             .. ok

	140: Count -d ab:z (SAM input)                              .. ok

	141: Filter -d ab:z (BAM input)                             .. ok

	142: Count -d ab:z (BAM input)                              .. ok

	143: Filter -d ab:z (CRAM input)                            .. ok

	144: Count -d ab:z (CRAM input)                             .. ok

	145: Filter -l Library 2 (SAM input)                        .. ok

	146: Count -l Library 2 (SAM input)                         .. ok

	147: Filter -l Library 2 (BAM input)                        .. ok

	148: Count -l Library 2 (BAM input)                         .. ok

	149: Filter -l Library 2 (CRAM input)                       .. ok

	150: Count -l Library 2 (CRAM input)                        .. ok

	151: Filter -l Library 3 (SAM input)                        .. ok

	152: Count -l Library 3 (SAM input)                         .. ok

	153: Filter -l Library 3 (BAM input)                        .. ok

	154: Count -l Library 3 (BAM input)                         .. ok

	155: Filter -l Library 3 (CRAM input)                       .. ok

	156: Count -l Library 3 (CRAM input)                        .. ok

	157: Filter -q 50 (SAM input)                               .. ok

	158: Count -q 50 (SAM input)                                .. ok

	159: Filter -q 50 (BAM input)                               .. ok

	160: Count -q 50 (BAM input)                                .. ok

	161: Filter -q 50 (CRAM input)                              .. ok

	162: Count -q 50 (CRAM input)                               .. ok

	163: Filter -q 99 (SAM input)                               .. ok

	164: Count -q 99 (SAM input)                                .. ok

	165: Filter -q 99 (BAM input)                               .. ok

	166: Count -q 99 (BAM input)                                .. ok

	167: Filter -q 99 (CRAM input)                              .. ok

	168: Count -q 99 (CRAM input)                               .. ok

	169: Filter -q 100 (SAM input)                              .. ok

	170: Count -q 100 (SAM input)                               .. ok

	171: Filter -q 100 (BAM input)                              .. ok

	172: Count -q 100 (BAM input)                               .. ok

	173: Filter -q 100 (CRAM input)                             .. ok

	174: Count -q 100 (CRAM input)                              .. ok

	175: Filter -x fa (SAM input)                               .. ok

	176: Count -x fa (SAM input)                                .. ok

	177: Filter -x fa (BAM input)                               .. ok

	178: Count -x fa (BAM input)                                .. ok

	179: Filter -x fa (CRAM input)                              .. ok

	180: Count -x fa (CRAM input)                               .. ok

	181: Filter -x fa -x ha (SAM input)                         .. ok

	182: Count -x fa -x ha (SAM input)                          .. ok

	183: Filter -x fa -x ha (BAM input)                         .. ok

	184: Count -x fa -x ha (BAM input)                          .. ok

	185: Filter -x fa -x ha (CRAM input)                        .. ok

	186: Count -x fa -x ha (CRAM input)                         .. ok

	187: Filter -x fa,ha (SAM input)                            .. ok

	188: Count -x fa,ha (SAM input)                             .. ok

	189: Filter -x fa,ha (BAM input)                            .. ok

	190: Count -x fa,ha (BAM input)                             .. ok

	191: Filter -x fa,ha (CRAM input)                           .. ok

	192: Count -x fa,ha (CRAM input)                            .. ok

	193: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	194: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	195: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	196: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	197: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	198: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	199: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	200: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	201: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	202: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	203: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	204: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	205: Filter -x fa -r grp2 (SAM input)                       .. ok

	206: Count -x fa -r grp2 (SAM input)                        .. ok

	207: Filter -x fa -r grp2 (BAM input)                       .. ok

	208: Count -x fa -r grp2 (BAM input)                        .. ok

	209: Filter -x fa -r grp2 (CRAM input)                      .. ok

	210: Count -x fa -r grp2 (CRAM input)                       .. ok

	211: Filter -x RG -r grp2 (SAM input)                       .. ok

	212: Count -x RG -r grp2 (SAM input)                        .. ok

	213: Filter -x RG -r grp2 (BAM input)                       .. ok

	214: Count -x RG -r grp2 (BAM input)                        .. ok

	215: Filter -x RG -r grp2 (CRAM input)                      .. ok

	216: Count -x RG -r grp2 (CRAM input)                       .. ok

	217: Filter -m 10 (SAM input)                               .. ok

	218: Count -m 10 (SAM input)                                .. ok

	219: Filter -m 10 (BAM input)                               .. ok

	220: Count -m 10 (BAM input)                                .. ok

	221: Filter -m 10 (CRAM input)                              .. ok

	222: Count -m 10 (CRAM input)                               .. ok

	223: Filter -m 11 (SAM input)                               .. ok

	224: Count -m 11 (SAM input)                                .. ok

	225: Filter -m 11 (BAM input)                               .. ok

	226: Count -m 11 (BAM input)                                .. ok

	227: Filter -m 11 (CRAM input)                              .. ok

	228: Count -m 11 (CRAM input)                               .. ok

	229: Filter -m 15 (SAM input)                               .. ok

	230: Count -m 15 (SAM input)                                .. ok

	231: Filter -m 15 (BAM input)                               .. ok

	232: Count -m 15 (BAM input)                                .. ok

	233: Filter -m 15 (CRAM input)                              .. ok

	234: Count -m 15 (CRAM input)                               .. ok

	235: Filter -m 16 (SAM input)                               .. ok

	236: Count -m 16 (SAM input)                                .. ok

	237: Filter -m 16 (BAM input)                               .. ok

	238: Count -m 16 (BAM input)                                .. ok

	239: Filter -m 16 (CRAM input)                              .. ok

	240: Count -m 16 (CRAM input)                               .. ok

	241: Filter -e !(flag & 128) && (flag & 2) (SAM input)      .. ok

	242: Count -e !(flag & 128) && (flag & 2) (SAM input)       .. ok

	243: Filter -e !(flag & 128) && (flag & 2) (BAM input)      .. ok

	244: Count -e !(flag & 128) && (flag & 2) (BAM input)       .. ok

	245: Filter -e !(flag & 128) && (flag & 2) (CRAM input)     .. ok

	246: Count -e !(flag & 128) && (flag & 2) (CRAM input)      .. ok

	247: Filter -e [BC] (SAM input)                             .. ok

	248: Count -e [BC] (SAM input)                              .. ok

	249: Filter -e [BC] (BAM input)                             .. ok

	250: Count -e [BC] (BAM input)                              .. ok

	251: Filter -e [BC] (CRAM input)                            .. ok

	252: Count -e [BC] (CRAM input)                             .. ok

	253: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	254: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	255: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	256: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	257: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	258: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	259: Filter -e mapq >= 50 (SAM input)                       .. ok

	260: Count -e mapq >= 50 (SAM input)                        .. ok

	261: Filter -e mapq >= 50 (BAM input)                       .. ok

	262: Count -e mapq >= 50 (BAM input)                        .. ok

	263: Filter -e mapq >= 50 (CRAM input)                      .. ok

	264: Count -e mapq >= 50 (CRAM input)                       .. ok

	265: Filter -e mapq >= 99 (SAM input)                       .. ok

	266: Count -e mapq >= 99 (SAM input)                        .. ok

	267: Filter -e mapq >= 99 (BAM input)                       .. ok

	268: Count -e mapq >= 99 (BAM input)                        .. ok

	269: Filter -e mapq >= 99 (CRAM input)                      .. ok

	270: Count -e mapq >= 99 (CRAM input)                       .. ok

	271: Filter -e mapq >= 100 (SAM input)                      .. ok

	272: Count -e mapq >= 100 (SAM input)                       .. ok

	273: Filter -e mapq >= 100 (BAM input)                      .. ok

	274: Count -e mapq >= 100 (BAM input)                       .. ok

	275: Filter -e mapq >= 100 (CRAM input)                     .. ok

	276: Count -e mapq >= 100 (CRAM input)                      .. ok

	277: 1bp reads file SAM -> BAM -> SAM                       .. ok

	278: 1bp reads file SAM -> CRAM -> SAM                      .. ok

	278: Region  Z (BAM input)                                  .. ok

	279: Count  Z (BAM input)                                   .. ok

	280: Region  Z (CRAM input)                                 .. ok

	281: Count  Z (CRAM input)                                  .. ok

	282: Region  Z:30 (BAM input)                               .. ok

	283: Count  Z:30 (BAM input)                                .. ok

	284: Region  Z:30 (CRAM input)                              .. ok

	285: Count  Z:30 (CRAM input)                               .. ok

	286: Region  Z:20-40 (BAM input)                            .. ok

	287: Count  Z:20-40 (BAM input)                             .. ok

	288: Region  Z:20-40 (CRAM input)                           .. ok

	289: Count  Z:20-40 (CRAM input)                            .. ok

	290: Region  ref1 (BAM input)                               .. ok

	291: Count  ref1 (BAM input)                                .. ok

	292: Region  ref1 (CRAM input)                              .. ok

	293: Count  ref1 (CRAM input)                               .. ok

	294: Region  ref1:15 (BAM input)                            .. ok

	295: Count  ref1:15 (BAM input)                             .. ok

	296: Region  ref1:15 (CRAM input)                           .. ok

	297: Count  ref1:15 (CRAM input)                            .. ok

	298: Region  ref1:15-45 (BAM input)                         .. ok

	299: Count  ref1:15-45 (BAM input)                          .. ok

	300: Region  ref1:15-45 (CRAM input)                        .. ok

	301: Count  ref1:15-45 (CRAM input)                         .. ok

	302: Region  ref1:15-45 ref2 (BAM input)                    .. ok

	303: Count  ref1:15-45 ref2 (BAM input)                     .. ok

	304: Region  ref1:15-45 ref2 (CRAM input)                   .. ok

	305: Count  ref1:15-45 ref2 (CRAM input)                    .. ok

	306: Region  ref1:15-45 ref2:16 (BAM input)                 .. ok

	307: Count  ref1:15-45 ref2:16 (BAM input)                  .. ok

	308: Region  ref1:15-45 ref2:16 (CRAM input)                .. ok

	309: Count  ref1:15-45 ref2:16 (CRAM input)                 .. ok

	310: Region  ref1:15-45 ref2:16-31 (BAM input)              .. ok

	311: Count  ref1:15-45 ref2:16-31 (BAM input)               .. ok

	312: Region  ref1:15-45 ref2:16-31 (CRAM input)             .. ok

	313: Count  ref1:15-45 ref2:16-31 (CRAM input)              .. ok

	314: Region  ref1:15-15 ref1:45-45 (BAM input)              .. ok

	315: Count  ref1:15-15 ref1:45-45 (BAM input)               .. ok

	316: Region  ref1:15-15 ref1:45-45 (CRAM input)             .. ok

	317: Count  ref1:15-15 ref1:45-45 (CRAM input)              .. ok

	318: Region -f 128 ref1 (BAM input)                         .. ok

	319: Count -f 128 ref1 (BAM input)                          .. ok

	320: Region -f 128 ref1 (CRAM input)                        .. ok

	321: Count -f 128 ref1 (CRAM input)                         .. ok

	322: Region -q 50 ref1:15-45 (BAM input)                    .. ok

	323: Count -q 50 ref1:15-45 (BAM input)                     .. ok

	324: Region -q 50 ref1:15-45 (CRAM input)                   .. ok

	325: Count -q 50 ref1:15-45 (CRAM input)                    .. ok

	326: Region -r grp2 ref1:15-45 (BAM input)                  .. ok

	327: Count -r grp2 ref1:15-45 (BAM input)                   .. ok

	328: Region -r grp2 ref1:15-45 (CRAM input)                 .. ok

	329: Count -r grp2 ref1:15-45 (CRAM input)                  .. ok

	330: Region  * (BAM input)                                  .. ok

	331: Count  * (BAM input)                                   .. ok

	332: Region  * (CRAM input)                                 .. ok

	333: Count  * (CRAM input)                                  .. ok

	334: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed  (BAM input).. ok

	335: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed  (BAM input).. ok

	336: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed  (CRAM input).. ok

	337: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed  (CRAM input).. ok

	338: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.02.bed  (BAM input).. ok

	339: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.02.bed  (BAM input).. ok

	340: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.02.bed  (CRAM input).. ok

	341: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.02.bed  (CRAM input).. ok

	342: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed  (BAM input).. ok

	343: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed  (BAM input).. ok

	344: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed  (CRAM input).. ok

	345: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed  (CRAM input).. ok

	346: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.02.bed  (BAM input).. ok

	347: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.02.bed  (BAM input).. ok

	348: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.02.bed  (CRAM input).. ok

	349: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.02.bed  (CRAM input).. ok

	350: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.03.bed  (BAM input).. ok

	351: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.03.bed  (BAM input).. ok

	352: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.03.bed  (CRAM input).. ok

	353: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.03.bed  (CRAM input).. ok

	354: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z (BAM input).. ok

	355: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z (BAM input).. ok

	356: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z (CRAM input).. ok

	357: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z (CRAM input).. ok

	358: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	359: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	360: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	361: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	362: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	363: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	364: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	365: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	366: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	367: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	368: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	369: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	370: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	371: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	372: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	373: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	374: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref2 (BAM input).. ok

	375: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref2 (BAM input).. ok

	376: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	377: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	378: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	379: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	380: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	381: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	382: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	383: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	384: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	385: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	386: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	387: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	388: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	389: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	390: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	391: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	392: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	393: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	394: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	395: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	396: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	397: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	398: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	399: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	400: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	401: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	402: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	403: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	404: Region -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	405: Count -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	406: -L with nested regions                                 .. ok

	407: Make BAM with no M5/UR tags                            .. ok

	408: Add @SQ with -t (SAM -> SAM)                           .. ok

	409: Add @SQ with -T (SAM -> SAM)                           .. ok

	410: Add @SQ with -t (BAM -> SAM)                           .. ok

	411: Add @SQ with -T (BAM -> SAM)                           .. ok

	412: Add @SQ with -t (SAM -> BAM)                           .. ok

	413: Add @SQ with -T (SAM -> BAM)                           .. ok

	414: Add @SQ with -t (BAM -> BAM)                           .. ok

	415: Add @SQ with -T (BAM -> BAM)                           .. ok

	416: Add @SQ with -t (SAM -> CRAM)                          .. ok

	417: Add @SQ with -T (SAM -> CRAM)                          .. ok

	418: Add @SQ with -t (BAM -> CRAM)                          .. ok

	419: Add @SQ with -T (BAM -> CRAM)                          .. ok

	420: Make CRAM with no UR field                             .. ok

	421: Decoding CRAM with no UR field via -T                  .. ok

	422: CIGAR B-operator removal                               .. ok

	423: Big SAM -> BAM                                         .. ok

	424: Big SAM -> BAM (2 threads)                             .. ok

	425: Big SAM -> BAM (4 threads)                             .. ok

	426: Big SAM -> CRAM                                        .. ok

	427: Big SAM -> CRAM (2 threads)                            .. ok

	428: Big SAM -> CRAM (4 threads)                            .. ok

	429: Subsample 0.2 (SAM input) ............ ok

	430: Subsample 0.5 (SAM input) ............ ok

	431: Subsample 0.8 (SAM input) ............ ok

	432: Subsample 0.2 (BAM input) ............ ok

	433: Subsample 0.5 (BAM input) ............ ok

	434: Subsample 0.8 (BAM input) ............ ok

	435: Subsample 0.2 (CRAM input) ............ ok

	436: Subsample 0.5 (CRAM input) ............ ok

	437: Subsample 0.8 (CRAM input) ............ ok

	438: SAM add PG                                             .. ok

	439: Unset dup flag, remove dt and do tags                  .. ok

	440: Unmap dup flagged reads.                               .. ok

	441: Unmap dup flagged reads.                               .. ok

	442: fetch pairs                                            .. ok

	443: fetch pairs                                            .. ok

	444: fetch pairs                                            .. ok

test_head:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools head /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools head -h 0 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools head -h 1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools head -h 5 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools head -h 29 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools head -h 30 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools head -n 0 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools head -n 1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools head -n 5 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools head -h 5 -n 5 < /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.sam
.. ok

test_cat:
	Generating test data file .................. done
	Generate BAM file #1                                        .. ok

	Generate BAM region file #1                                 .. ok

	Generate CRAM file #1                                       .. ok

	Generating test data file .................. done
	Generate BAM file #2                                        .. ok

	Generate BAM region file #2                                 .. ok

	Generate CRAM file #2                                       .. ok

	Generating test data file .................. done
	Generate BAM file #3                                        .. ok

	Generate BAM region file #3                                 .. ok

	Generate CRAM file #3                                       .. ok

	Generating test data file .................. done
	Generate BAM file #4                                        .. ok

	Generate BAM region file #4                                 .. ok

	Generate CRAM file #4                                       .. ok

	1: cat BAM files                                            .. ok

	2: cat recompressed BAM files                               .. ok

	3: cat CRAM files                                           .. ok

	4: cat CRAM subregion files                                 .. ok

	5: cat BAM files to stdout                                  .. ok

	6: cat recompressed BAM files to stdout                     .. ok

	7: cat CRAM files to stdout                                 .. ok

	8: cat CRAM subregion files to stdout                       .. ok

	9: cat CRAM part 1/2                                        .. ok

	9: cat CRAM part 2/2                                        .. ok

	9: cat CRAM parts 1/2 + 2/2                                 .. ok

	10: cat BAM files with new header                           .. ok

	11: cat recompressed BAM files with new header              .. ok

	12: cat CRAM files with new header                          .. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG -0 test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -0 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG -s test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -0 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG -s test/bam2fq/5.s.fq.expected  | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG test/bam2fq/5.1.fq.expected test/bam2fq/5.2.fq.expected | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -N -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG --barcode-tag OX -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq --barcode-tag OX -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG -T "" -1 test/bam2fq/6.1.fq.expected -2 test/bam2fq/6.2.fq.expected | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -N -T RG,BC,QT -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG -T "*" -1 test/bam2fq/7.1.fq.expected -2 test/bam2fq/7.2.fq.expected | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -N -T RG,BC,QT,MD,ia -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -R rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r ID:rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r '@RG	ID:rgid'
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG test/import/2.interleaved.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG test/import/3.interleaved.fq -i
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG test/import/4.aux.fq -T "*"
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG test/import/4.aux.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG test/import/4.aux.fq -T XZ,XA,AA
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq --barcode-tag OX --quality-tag BZ
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG -U test/bam2fq/UMI.fq.expected
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools import --no-PG -U --UMI-tag OX test/bam2fq/UMI.fq.expected
.. ok

test_bam2fq:
	Generate BAM file                                           .. ok

	Generate CRAM file                                          .. ok

	1: fastq  (SAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input)                                      [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input)                                    [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -N -t -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/i.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/i.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -N -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/o.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/o.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fasta  -N -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/o.fa -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/o.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -N -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/o.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -N -s /tmp/uv8k5VIgJi/bam2fq.discard.s.fq -0 /tmp/uv8k5VIgJi/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/i2.fq -0 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/0.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.014.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -N -T '' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -N -t -T '*' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -N -T '*' -d MD:10 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -N -T '*' -d NM:0 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -N -T '*' -d ia /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -d NM:13 -d NM:14 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -D NM:test/dat/bam2fq.NM-D /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -D MD:test/dat/bam2fq.MD-D /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -O --no-sc --no-sc-bkp -T 's0' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -O --no-sc -T's0' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -O --no-sc /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq  -O --no-sc --sc-aux s1 -T's0,s1' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -U test/import/UMI.expected.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -U --UMI-tag RX,OX test/import/UMI-OX.expected.sam
.. ok

test_bam2fq:
	Generate BAM file (2 threads)                               .. ok

	Generate CRAM file (2 threads)                              .. ok

	1: fastq  (SAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input) (2 threads)                          [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input) (2 threads)                        [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bc.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -N -t -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/i.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/i.fq -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/s.fq -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/1.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/2.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -N -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/o.fq -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/o.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fasta -@ 2 -N -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/o.fa -2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/o.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -N -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/o.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -N -s /tmp/uv8k5VIgJi/bam2fq.discard.s.fq -0 /tmp/uv8k5VIgJi/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/i2.fq -0 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/0.fq /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.014.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -N -T '' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -N -t -T '*' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -N -T '*' -d MD:10 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -N -T '*' -d NM:0 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -N -T '*' -d ia /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -d NM:13 -d NM:14 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -D NM:test/dat/bam2fq.NM-D /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -D MD:test/dat/bam2fq.MD-D /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -O --no-sc --no-sc-bkp -T 's0' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -O --no-sc -T's0' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -O --no-sc /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -@ 2 -O --no-sc --sc-aux s1 -T's0,s1' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/bam2fq.sc.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -U test/import/UMI.expected.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fastq -U --UMI-tag RX,OX test/import/UMI-OX.expected.sam
.. ok

test_depad:
	Generate BAM file                                           .. ok

	depad  (SAM input)                                          .. ok

	depad -s (SAM input)                                        .. ok

	depad -u (SAM input)                                        .. ok

	depad -1 (SAM input)                                        .. ok

	depad  (BAM input)                                          .. ok

	depad -s (BAM input)                                        .. ok

	depad -u (BAM input)                                        .. ok

	depad -1 (BAM input)                                        .. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/1_map_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/2_equal_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/2_equal_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/3_map_cigar_equal_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/3_map_cigar_equal_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/4_X_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/4_X_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/5_insert_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test.fa -i 0 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/7_supp.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/7_supp_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/8_secondary.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/8_secondary_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/10_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -t /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -g 4 -t /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -g 4 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/13_barcodes_ok.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/13_barcodes_ok_ox_bz.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/13_barcodes_fail_bc_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/13_barcodes_fail_hyphen.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/13_barcodes_fail_qt_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -I s1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -I grp2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -I grp3 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -I Sample /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/mpileup/ce.fa /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/15.big_del.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.sam | grep -e"^RFS"
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.sam -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test.fa

	ERR: [E::faidx_adjust_position] The sequence "ref1" was not found
Failed to fetch the sequence "ref1"

.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.sam -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test1.fa | grep -e"^RFS"
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats --ref-stats --ref-stats-chunk -1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.sam -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test1.fa | grep -e"^RFS"
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.bam -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test1.fa alpha:10-20 | grep -e"^RFS"
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.sam -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test1.fa -t /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11.stats.targets  | grep -e"^RFS"
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools stats --ref-stats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11_target.bam -r /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/test1.fa -t /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/stat/11.stats.targets ref1 | grep -e"^RFS"
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -s 1 -O sam -b /tmp/cf4V4EgKia - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -s 1 -p -c -t PG -O SAM - /tmp/uv8k5VIgJi/merge.tag.1.bam /tmp/uv8k5VIgJi/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -s 1 -p -c -n -t PG -O SAM - /tmp/uv8k5VIgJi/merge.tag.3.bam /tmp/uv8k5VIgJi/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge --no-PG -O SAM - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/merge/merge.bed - /tmp/uv8k5VIgJi/merge.bed.1.bam /tmp/uv8k5VIgJi/merge.bed.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge --no-PG -r -O SAM - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge --no-PG -O SAM --template-coordinate - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/merge/test_template_coordinate.1.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/merge/test_template_coordinate.2.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 -s 1 -O sam -b /tmp/kkjo17yHSz - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 -s 1 -p -c -t PG -O SAM - /tmp/uv8k5VIgJi/merge.tag.1.bam /tmp/uv8k5VIgJi/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 -s 1 -p -c -n -t PG -O SAM - /tmp/uv8k5VIgJi/merge.tag.3.bam /tmp/uv8k5VIgJi/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 --no-PG -O SAM - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/merge/merge.bed - /tmp/uv8k5VIgJi/merge.bed.1.bam /tmp/uv8k5VIgJi/merge.bed.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 --no-PG -r -O SAM - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -@ 2 --no-PG -O SAM --template-coordinate - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/merge/test_template_coordinate.1.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/merge/test_template_coordinate.2.sam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /tmp/uv8k5VIgJi/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /tmp/uv8k5VIgJi/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /tmp/uv8k5VIgJi/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -n -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -N -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -n -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/sort_name_input_1.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -t RG -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -n -t RG -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -t AS -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -t FI -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort --template-coordinate -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/sort/template-coordinate.sort.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -m 10M -M -K10 -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -m 10M -M -K10 -I /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.ref.fa -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -m 10M -MH -K10 -I /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.ref.fa -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /tmp/uv8k5VIgJi/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /tmp/uv8k5VIgJi/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam /tmp/uv8k5VIgJi/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -n -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -N -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_b.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -n -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/sort_name_input_1.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -t RG -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -n -t RG -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -t AS -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -t FI -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 --template-coordinate -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/sort/template-coordinate.sort.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -m 10M -M -K10 -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -m 10M -M -K10 -I /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.ref.fa -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/auto_indexed.tmp.bam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -@ 2 -m 10M -MH -K10 -I /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.ref.fa -O SAM -o -
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate --output-fmt=sam -O /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate --output-fmt=sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate --output-fmt=sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate -@ 2 --output-fmt=sam -O /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate -@ 2 --output-fmt=sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate -@ 2 --output-fmt=sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools collate -@ 2 --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/sanitize.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_ok+.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_ok-.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_draft.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_not_updated.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_not_updated_noML.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_not_updated_noMN.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_bad_MN.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_MN_only.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_ML_only.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_ML_wrong_len.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_noseq.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_bounds.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/sanitize.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_ok+.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_ok-.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_draft.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_not_updated.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_not_updated_noML.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_not_updated_noMN.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_bad_MN.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_MN_only.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_ML_only.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_ML_wrong_len.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_noseq.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -@ 2 -M -z off -O sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/fixmate/mod_bounds.sam -
.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools calmd -uAr /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.ref.fa
.. ok

/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools calmd -@ 2 -uAr /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.ref.fa
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools idxstats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools idxstats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.cram
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools idxstats /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.sam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/1.quickcheck.badeof.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/2.quickcheck.badheader.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/3.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/4.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/5.quickcheck.scramble30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/6.quickcheck.cram21.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/7.quickcheck.cram30.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/8.quickcheck.cram21.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/9.quickcheck.cram30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/10.quickcheck.notargets.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck -v  /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/1.quickcheck.badeof.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/2.quickcheck.badheader.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/3.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/4.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/5.quickcheck.scramble30.truncated.cram /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/6.quickcheck.cram21.ok.cram /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/7.quickcheck.cram30.ok.cram /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/8.quickcheck.cram21.truncated.cram /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/9.quickcheck.cram30.truncated.cram /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools quickcheck -uv /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reheader /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reheader /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.tmp.v21.cram | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reheader /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reheader --in-place /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.tmp.v21.cram && /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.tmp.v21.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reheader --in-place /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.tmp.v30.cram && /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.tmp.v30.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -O sam -m orphan_only /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -O sam -R '1#9' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -@ 2 -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -@ 2 -O sam -m orphan_only /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -@ 2 -O sam -R '1#9' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -@ 2 -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -@ 2 -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -@ 2 -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools addreplacerg -@ 2 -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/addrprg/1_fixup.sam
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/1_name_sort.sam -

	ERR: samtools markdup: error, queryname sorted, must be sorted by coordinate.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/2_bad_order.sam -

	ERR: samtools markdup: error, not in coordinate sorted order.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/3_missing_mc.sam -

	ERR: samtools markdup: error, no MC tag. Please run samtools fixmate on file first.

samtools markdup: error, unable to assign pair hash key.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/4_missing_ms.sam -

	ERR: samtools markdup: error, no ms score tag. Please run samtools fixmate on file first.

samtools markdup: error, no ms score tag. Please run samtools fixmate on file first.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -O sam -r --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/12_optical_chain_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -d 100 --mode s -t --barcode-tag BX -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/13_optical_barcode_tag.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -d 100 --mode s -t --barcode-name -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/14_optical_barcode_name.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]+):([0-9]+)' --coords-order xy -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/15_optical_barcode_rgx_name.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]{4})([0-9]{4})' --coords-order xy -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/16_optical_barcode_rgx_name_test_2.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -d 100 --mode s -t --use-read-groups -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/17_read_group.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup --mode t -t -O sam --no-PG --duplicate-count --barcode-tag BC -S /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/18_primary_duplicate_count.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/1_name_sort.sam -

	ERR: samtools markdup: error, queryname sorted, must be sorted by coordinate.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/2_bad_order.sam -

	ERR: samtools markdup: error, not in coordinate sorted order.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/3_missing_mc.sam -

	ERR: samtools markdup: error, no MC tag. Please run samtools fixmate on file first.

samtools markdup: error, unable to assign pair hash key.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/4_missing_ms.sam -

	ERR: samtools markdup: error, no ms score tag. Please run samtools fixmate on file first.

samtools markdup: error, no ms score tag. Please run samtools fixmate on file first.


.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -O sam -r --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/12_optical_chain_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-tag BX -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/13_optical_barcode_tag.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-name -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/14_optical_barcode_name.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]+):([0-9]+)' --coords-order xy -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/15_optical_barcode_rgx_name.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]{4})([0-9]{4})' --coords-order xy -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/16_optical_barcode_rgx_name_test_2.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 -d 100 --mode s -t --use-read-groups -O sam --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/17_read_group.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools markdup -@ 2 --mode t -t -O sam --no-PG --duplicate-count --barcode-tag BC -S /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/markdup/18_primary_duplicate_count.sam -
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools bedcov /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools bedcov -j /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools bedcov -g512 -G2048 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bedcov/bedcov_gG.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools bedcov -c /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bedcov/bedcov_gG.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/bedcov/bedcov.bam
.. ok

.. ok

.. ok

.. ok

.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  --output-fmt sam -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%#.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  --output-fmt sam -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -p 5 -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%#.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  --output-fmt sam -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  --output-fmt sam -d RG -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  --output-fmt sam -d an -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  --output-fmt sam -d an -M 3 -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  --output-fmt sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -d nn -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.unk.sam  /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split_d_nn.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  --output-fmt sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -p 4 -d nn -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.0unk.sam  /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split_d_nn.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort  -t nn /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split_d_nn.sam |
                /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  --output-fmt sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -p 4 -d nn -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.0unk.sam - 
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%#.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -p 5 -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%#.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  -@ 2 --output-fmt sam -d RG -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  -@ 2 --output-fmt sam -d an -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  -@ 2 --output-fmt sam -d an -M 3 -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  -@ 2 --output-fmt sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -d nn -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.unk.sam  /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split_d_nn.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  -@ 2 --output-fmt sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -p 4 -d nn -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.0unk.sam  /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split_d_nn.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort  -@ 2 -t nn /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split_d_nn.sam |
                /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools split  -@ 2 --output-fmt sam -f /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.%!.%. -p 4 -d nn -u /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/split/split.tmp.d_nn.0unk.sam - 
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -h --no-PG /tmp/uv8k5VIgJi/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -h --no-PG /tmp/uv8k5VIgJi/longref.sam.gz CHROMOSOME_I:10000000114-10000000168
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view -h --no-PG -L /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/large_pos/test.bed /tmp/uv8k5VIgJi/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort -O sam --no-PG -m 10M /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/large_pos/longref_name.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools merge -O sam --no-PG - /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/large_pos/longref.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/large_pos/longref2.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools depth /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools depth -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/large_pos/test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools tview -d T -p CHROMOSOME_I:10000000000 /tmp/uv8k5VIgJi/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort    -O sam --no-PG -n -m 10M test/large_pos/longref3.sam |
                     /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools fixmate -O sam --no-PG - - |
                     /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools sort    -O sam --no-PG -m 10M
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --primer-counts /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/primer_counts.tsv --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --primer-counts /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/primer_counts.tsv -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip --no-PG --output-fmt=sam --keep-tag --primer-counts /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/primer_counts.tsv -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/3_multi_ref_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip --no-PG --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test2.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/4_total_hc_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --primer-counts /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/primer_counts.tsv --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --primer-counts /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/primer_counts.tsv -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam --keep-tag --primer-counts /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/primer_counts.tsv -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/3_multi_ref_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test2.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/4_total_hc_data.sam
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconstats -@ 2 -S -t 50 -d 1,20,100 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_hard_clipped.expected.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_soft_clipped.expected.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/1_soft_clipped_strand.expected.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/2_both_clipped.expected.sam | grep -E -v 'Samtools version|Command line'
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconstats -@ 2 -c 0 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconstats/mixed_clipped.sam | grep -E -v 'Samtools version|Command line'
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools ampliconstats -@ 2 -c 0 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/ampliconstats/mixed_clipped.sam | grep -E -v 'Samtools version|Command line'
.. ok

test_reset:
	cat /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset --dupflag | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag < /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools view
.. ok

test_reset:
	cat /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam | /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output.tmp.sam
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output.tmp.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.bam
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output.tmp.sam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/test_input_1_a.cram
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output.tmp.sam; grep /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output.tmp.sam -e"@PG	ID:samtools	PN:samtools" | wc -l | sed 's/ //g'
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag --reject-PG sam_to_fixed_bam /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output.tmp.sam; grep /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output.tmp.sam -e"@PG	ID:" | wc -l | sed 's/ //g'
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index --no-PG /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output.tmp.sam; grep /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output.tmp.sam -e"@PG"
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam --no-RG -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam --no-RG --keep-tag RG -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam --no-RG --keep-tag X0,MD -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam --no-RG --remove-tag X0,X1,MD --keep-tag X0,MD -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam --no-RG --remove-tag X0,X1,MD -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam --no-RG -x X0,X1,MD -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag --reject-PG bwa_index /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/mpileup.1.sam --no-RG --remove-tag ^X0,MD --keep-tag X1 -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset  --dupflag /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/seq.sam -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output
.. ok

test_reset:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools reset /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/seq.sam -o /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/reset/output
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk1.bam | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -a /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -qv /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -qv -a /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -m /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk1-ERR*.tmp.chk | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -m /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk2-*.tmp.chk | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -@ 2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk1.bam | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -@ 2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -@ 2 -a /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -@ 2 -qv /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -@ 2 -qv -a /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk2.cram | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -@ 2 -m /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk1-ERR*.tmp.chk | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_checksum:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools checksum -@ 2 -m /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/checksum/chk2-*.tmp.chk | sed 's/\(# Checksum[^:]*:\).*/\1/'
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools coverage /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/sample.sam
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools coverage --min-depth 1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/sample.sam
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools coverage --min-depth 2 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/sample.sam
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools coverage --min-depth 2 -Q 8 -q 45 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/sample.sam
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools coverage --min-depth 1 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/sample.sam /tmp/uv8k5VIgJi/sample1.sam
.. ok

test_coverage:
	/builddir/build/BUILD/samtools-1.23-build/samtools-1.23/samtools coverage --min-depth 4 /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/test/dat/sample.sam /tmp/uv8k5VIgJi/sample1.sam
.. ok


Number of tests:
    total            .. 998
    passed           .. 966
    failed           .. 0
    expected failure .. 32
    unexpected pass  .. 0

test/merge/test_bam_translate test/merge/test_bam_translate.tmp
test/merge/test_rtrans_build
test/merge/test_trans_tbl_init
cd test/mpileup && AWK="gawk" ../regression.sh mpileup.reg

=== Testing mpileup.reg regressions ===
[W::cram_encode_aux] Missing @RG header for RG "ERR162872"
[W::cram_encode_aux] Missing @RG header for RG "ERR162872"
[W::cram_encode_aux] Missing @RG header for RG "ERR162872"
[W::cram_encode_aux] Missing @RG header for RG "ERR162872"

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools mpileup -ABQ0 -a -l xx.bed3 xx#depth3.bam

Expected   passes:   120
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/mpileup && AWK="gawk" ../regression.sh depth.reg

=== Testing depth.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools depth -a -b xx.bed3 xx#depth3.bam

Expected   passes:   55
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/mpileup && AWK="gawk" ../regression.sh cram-size.reg

=== Testing cram-size.reg regressions ===

Expected   passes:   5
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
cd test/consensus && AWK="gawk" ../regression.sh consensus.reg

=== Testing consensus.reg regressions ===

Expected   passes:   77
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
cd test/consensus && AWK="gawk" PARAM="-@4 -Z4" ../regression.sh consensus.reg

=== Testing consensus.reg regressions ===

Expected   passes:   77
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
cd test/cram_size && AWK="gawk" ../regression.sh cram_size.reg

=== Testing cram_size.reg regressions ===

Expected   passes:   3
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: samtools-1.23-1.fc44.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.mqc0TG
+ umask 022
+ cd /builddir/build/BUILD/samtools-1.23-build
+ cd samtools-1.23
+ DOCDIR=/builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/share/doc/samtools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/AUTHORS /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/ChangeLog.old /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/NEWS.md /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/examples /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/share/doc/samtools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.WKKANi
+ umask 022
+ cd /builddir/build/BUILD/samtools-1.23-build
+ cd samtools-1.23
+ LICENSEDIR=/builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/share/licenses/samtools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/share/licenses/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.23-build/samtools-1.23/LICENSE /builddir/build/BUILD/samtools-1.23-build/BUILDROOT/usr/share/licenses/samtools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: samtools = 1.23-1.fc44 samtools(ppc-64) = 1.23-1.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl ld64.so.2()(64bit) ld64.so.2(GLIBC_2.23)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libhts.so.3()(64bit) libhts.so.3(HTSLIB_1.0)(64bit) libhts.so.3(HTSLIB_1.1)(64bit) libhts.so.3(HTSLIB_1.10)(64bit) libhts.so.3(HTSLIB_1.11)(64bit) libhts.so.3(HTSLIB_1.12)(64bit) libhts.so.3(HTSLIB_1.14)(64bit) libhts.so.3(HTSLIB_1.15)(64bit) libhts.so.3(HTSLIB_1.16)(64bit) libhts.so.3(HTSLIB_1.17)(64bit) libhts.so.3(HTSLIB_1.18)(64bit) libhts.so.3(HTSLIB_1.2.1)(64bit) libhts.so.3(HTSLIB_1.21)(64bit) libhts.so.3(HTSLIB_1.22)(64bit) libhts.so.3(HTSLIB_1.23)(64bit) libhts.so.3(HTSLIB_1.3)(64bit) libhts.so.3(HTSLIB_1.4)(64bit) libhts.so.3(HTSLIB_1.5)(64bit) libhts.so.3(HTSLIB_1.6)(64bit) libhts.so.3(HTSLIB_1.7)(64bit) libhts.so.3(HTSLIB_1.9)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libncursesw.so.6()(64bit) libtinfo.so.6()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: samtools-debugsource-1.23-1.fc44.ppc64le
Provides: samtools-debugsource = 1.23-1.fc44 samtools-debugsource(ppc-64) = 1.23-1.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: samtools-debuginfo-1.23-1.fc44.ppc64le
Provides: debuginfo(build-id) = 65f8ba22b134b06785245651986edda560b321b5 debuginfo(build-id) = 96542bb463e3e3081c94a7d89306f584635ce028 debuginfo(build-id) = b1471ff6e72a6e2d478d92f219544a14fb1729fa debuginfo(build-id) = b5b7c3c7d6e085a578ba0154b7c041957d042eb1 debuginfo(build-id) = b74d92c3033c4ef9d1e3057a7aa5dfd7af683dd1 debuginfo(build-id) = d5d3fec7d2e3bbd85737a0d5a03941abdd15b07c debuginfo(build-id) = f0aca79bf95d2a9fe8c1d5614605b0d2a55e20c4 samtools-debuginfo = 1.23-1.fc44 samtools-debuginfo(ppc-64) = 1.23-1.fc44
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: samtools-debugsource(ppc-64) = 1.23-1.fc44
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/samtools-1.23-build/BUILDROOT
Wrote: /builddir/build/RPMS/samtools-1.23-1.fc44.ppc64le.rpm
Wrote: /builddir/build/RPMS/samtools-debugsource-1.23-1.fc44.ppc64le.rpm
Wrote: /builddir/build/RPMS/samtools-debuginfo-1.23-1.fc44.ppc64le.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.nrqXJA
+ umask 022
+ cd /builddir/build/BUILD/samtools-1.23-build
+ test -d /builddir/build/BUILD/samtools-1.23-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/samtools-1.23-build
+ rm -rf /builddir/build/BUILD/samtools-1.23-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild samtools-1.23-1.fc44.src.rpm
Finish: build phase for samtools-1.23-1.fc44.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1769509459.061935/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/samtools-1.23-1.fc44.src.rpm) Config(child) 2 minutes 20 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "samtools",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc44",
            "arch": "ppc64le"
        },
        {
            "name": "samtools",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc44",
            "arch": "src"
        },
        {
            "name": "samtools-debuginfo",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc44",
            "arch": "ppc64le"
        },
        {
            "name": "samtools-debugsource",
            "epoch": null,
            "version": "1.23",
            "release": "1.fc44",
            "arch": "ppc64le"
        }
    ]
}
RPMResults finished