Warning: Permanently added '13.120.89.142' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9960888-fedora-rawhide-s390x --chroot fedora-rawhide-s390x Version: 1.6 PID: 15372 Logging PID: 15374 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 9960888, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-s390x', 'enable_net': False, 'fedora_review': False, 'git_hash': '5048f8eaa75f10fb5f16268f2c58e0aeb4448e92', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/python-pysam', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-pysam', 'package_version': '0.23.3-3', 'project_dirname': 'mbp-gcc-16', 'project_name': 'mbp-gcc-16', 'project_owner': 'siddhesh', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/siddhesh/mbp-gcc-16/fedora-rawhide-s390x/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'https://kojipkgs.fedoraproject.org/repos/f44-build-side-124978/latest/$basearch/', 'id': 'https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch', 'name': 'Additional repo https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch'}], 'sandbox': 'siddhesh/mbp-gcc-16--siddhesh', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'siddhesh', 'tags': [], 'task_id': '9960888-fedora-rawhide-s390x', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/python-pysam /var/lib/copr-rpmbuild/workspace/workdir-d4x6497d/python-pysam --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/siddhesh/mbp-gcc-16/python-pysam', '/var/lib/copr-rpmbuild/workspace/workdir-d4x6497d/python-pysam', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-d4x6497d/python-pysam'... Running: git checkout 5048f8eaa75f10fb5f16268f2c58e0aeb4448e92 -- cmd: ['git', 'checkout', '5048f8eaa75f10fb5f16268f2c58e0aeb4448e92', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-d4x6497d/python-pysam rc: 0 stdout: stderr: Note: switching to '5048f8eaa75f10fb5f16268f2c58e0aeb4448e92'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 5048f8e automatic import of python-pysam Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-d4x6497d/python-pysam rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading pysam-0.23.3.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o pysam-0.23.3.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/siddhesh/mbp-gcc-16/python-pysam/pysam-0.23.3.tar.gz/md5/df44a9ab7bbf73d29e767e82de7b7227/pysam-0.23.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 4857k 100 4857k 0 0 3429k 0 0:00:01 0:00:01 --:--:-- 3430k INFO: Reading stdout from command: md5sum pysam-0.23.3.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-d4x6497d/python-pysam/python-pysam.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-d4x6497d/python-pysam --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1767276016.222837 -r /var/lib/copr-rpmbuild/results/configs/child.cfg tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: mock.py version 6.6 starting (python version = 3.13.7, NVR = mock-6.6-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-d4x6497d/python-pysam/python-pysam.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-d4x6497d/python-pysam --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1767276016.222837 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-d4x6497d/python-pysam/python-pysam.spec) Config(fedora-rawhide-s390x) Start: clean chroot Finish: clean chroot Mock Version: 6.6 INFO: Mock Version: 6.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1767276016.222837/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-8449664e-30a6-44e2-9e67-d300bff787d0 INFO: Checking that b00fc08da7709506c5302438358becd465e576077e2473214270b0ead599c539 image matches host's architecture INFO: Copy content of container b00fc08da7709506c5302438358becd465e576077e2473214270b0ead599c539 to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1767276016.222837/root INFO: mounting b00fc08da7709506c5302438358becd465e576077e2473214270b0ead599c539 with podman image mount INFO: image b00fc08da7709506c5302438358becd465e576077e2473214270b0ead599c539 as /var/lib/containers/storage/overlay/3088e1aa51869b4e872fddaf4f7b9b698eae7337b9913b5b46ec08149fa50134/merged INFO: umounting image b00fc08da7709506c5302438358becd465e576077e2473214270b0ead599c539 (/var/lib/containers/storage/overlay/3088e1aa51869b4e872fddaf4f7b9b698eae7337b9913b5b46ec08149fa50134/merged) with podman image umount INFO: Removing image mock-bootstrap-8449664e-30a6-44e2-9e67-d300bff787d0 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1767276016.222837/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc44.s390x rpm-sequoia-1.10.0-1.fc44.s390x dnf5-5.3.0.0-3.fc44.s390x dnf5-plugins-5.3.0.0-3.fc44.s390x Start: installing minimal buildroot with dnf5 Updating and loading repositories: Additional repo https_kojipkgs_fedorap 100% | 1.5 KiB/s | 3.5 KiB | 00m02s Copr repository 100% | 696.0 B/s | 1.5 KiB | 00m02s fedora 100% | 2.2 KiB/s | 5.6 KiB | 00m02s Repositories loaded. 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https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 277.0 B libstdc++ s390x 0:16.0.0-0.3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 3.2 MiB libtasn1 s390x 0:4.20.0-2.fc44 copr_base 183.9 KiB libtool-ltdl s390x 0:2.5.4-9.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 69.6 KiB libunistring s390x 0:1.1-10.fc44 copr_base 1.8 MiB libusb1 s390x 0:1.0.29-4.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 170.6 KiB libuuid s390x 0:2.41.3-8.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 33.0 KiB libverto s390x 0:0.3.2-11.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 25.1 KiB libxcrypt s390x 0:4.5.2-2.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 289.1 KiB libxml2 s390x 0:2.12.10-5.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.9 MiB libzstd s390x 0:1.5.7-3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.0 MiB linkdupes s390x 0:0.7.2-2.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 973.7 KiB lua-libs s390x 0:5.4.8-4.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 321.8 KiB lua-srpm-macros noarch 0:1-16.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.3 KiB lz4-libs s390x 0:1.10.0-3.fc44 copr_base 201.1 KiB mpfr s390x 0:4.2.2-2.fc44 copr_base 699.3 KiB ncurses-base noarch 0:6.5-8.20250614.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 328.1 KiB ncurses-libs s390x 0:6.5-8.20250614.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.0 MiB nettle s390x 0:3.10.1-2.fc44 copr_base 837.4 KiB ngtcp2 s390x 0:1.18.0-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 309.0 KiB ngtcp2-crypto-ossl s390x 0:1.18.0-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 47.3 KiB npth s390x 0:1.8-3.fc44 copr_base 45.1 KiB ocaml-srpm-macros noarch 0:11-2.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.9 KiB openblas-srpm-macros noarch 0:2-20.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 112.0 B openldap s390x 0:2.6.10-4.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 669.3 KiB openssl-libs s390x 1:3.5.4-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 7.3 MiB p11-kit s390x 0:0.25.8-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 2.6 MiB p11-kit-trust s390x 0:0.25.8-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 545.9 KiB package-notes-srpm-macros noarch 0:0.5-14.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.6 KiB pam-libs s390x 0:1.7.1-3.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 122.1 KiB pcre2 s390x 0:10.47-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 734.0 KiB pcre2-syntax noarch 0:10.47-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 281.9 KiB perl-srpm-macros noarch 0:1-60.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 861.0 B pkgconf s390x 0:2.3.0-3.fc44 copr_base 84.1 KiB pkgconf-m4 noarch 0:2.3.0-3.fc44 copr_base 14.4 KiB pkgconf-pkg-config s390x 0:2.3.0-3.fc44 copr_base 988.0 B policycoreutils s390x 0:3.9-7.fc44 copr_base 865.2 KiB popt s390x 0:1.19-9.fc44 copr_base 140.4 KiB publicsuffix-list-dafsa noarch 0:20250616-2.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 69.1 KiB pyproject-srpm-macros noarch 0:1.18.6-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.9 KiB python-srpm-macros noarch 0:3.14-9.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 500.0 B qt6-srpm-macros noarch 0:6.10.1-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 464.0 B readline s390x 0:8.3-2.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 575.3 KiB rpm s390x 0:6.0.1-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 3.1 MiB rpm-build-libs s390x 0:6.0.1-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 271.9 KiB rpm-libs s390x 0:6.0.1-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.0 MiB rpm-plugin-selinux s390x 0:6.0.1-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 11.7 KiB rpm-sequoia s390x 0:1.10.0-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 2.6 MiB rpm-sign-libs s390x 0:6.0.1-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 35.5 KiB rust-srpm-macros noarch 0:28.4-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 5.5 KiB selinux-policy noarch 0:42.19-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 32.0 KiB selinux-policy-targeted noarch 0:42.19-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 18.7 MiB setup noarch 0:2.15.0-27.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 724.9 KiB sqlite-libs s390x 0:3.51.0-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.7 MiB systemd-libs s390x 0:259-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 2.4 MiB systemd-standalone-sysusers s390x 0:259-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 301.5 KiB tpm2-tss s390x 0:4.1.3-8.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.6 MiB tree-sitter-srpm-macros noarch 0:0.4.2-1.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 8.3 KiB util-linux-core s390x 0:2.41.3-8.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.4 MiB xxhash-libs s390x 0:0.8.3-3.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 65.7 KiB xz-libs s390x 1:5.8.1-4.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 221.3 KiB zig-srpm-macros noarch 0:1-5.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.1 KiB zip s390x 0:3.0-44.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 729.6 KiB zlib-ng-compat s390x 0:2.3.2-2.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 125.1 KiB zstd s390x 0:1.5.7-3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 521.4 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 183 packages Total size of inbound packages is 67 MiB. Need to download 0 B. After this operation, 223 MiB extra will be used (install 223 MiB, remove 0 B). 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Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. [ 1/185] Verify package files 100% | 1.0 KiB/s | 183.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-51.fc44.s390x >>> Finished %pretrans scriptlet: filesystem-0:3.18-51.fc44.s390x >>> [RPM] /var/lib/mock/fedora-rawhide-s390x-1767276016.222837/root/var/cache/dnf/copr_base-15004adc45ddc503/packages/bzip2-1.0.8-21.fc44.s390x.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID 52ac7d71d4a9769d: NOKEY [ 2/185] Prepare transaction 100% | 2.0 KiB/s | 183.0 B | 00m00s [ 3/185] Installing libgcc-0:16.0.0-0. 100% | 198.3 MiB/s | 203.1 KiB | 00m00s [ 4/185] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/185] Installing publicsuffix-list- 100% | 0.0 B/s | 69.8 KiB | 00m00s [ 6/185] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 7/185] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/185] Installing fedora-gpg-keys-0: 100% | 43.7 MiB/s | 179.0 KiB | 00m00s [ 9/185] Installing fedora-repos-0:44- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/185] Installing fedora-release-com 100% | 24.3 MiB/s | 24.9 KiB | 00m00s [ 11/185] Installing fedora-release-0:4 100% | 17.3 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 12/185] Installing setup-0:2.15.0-27. 100% | 44.6 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/185] Installing filesystem-0:3.18- 100% | 2.5 MiB/s | 212.8 KiB | 00m00s [ 14/185] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB | 00m00s [ 15/185] Installing coreutils-common-0 100% | 340.3 MiB/s | 11.2 MiB | 00m00s [ 16/185] Installing ncurses-base-0:6.5 100% | 86.3 MiB/s | 353.5 KiB | 00m00s [ 17/185] Installing bash-0:5.3.0-2.fc4 100% | 246.4 MiB/s | 8.6 MiB | 00m00s [ 18/185] Installing glibc-common-0:2.4 100% | 60.2 MiB/s | 1.1 MiB | 00m00s [ 19/185] Installing glibc-gconv-extra- 100% | 234.9 MiB/s | 6.8 MiB | 00m00s [ 20/185] Installing glibc-0:2.42.9000- 100% | 132.8 MiB/s | 5.3 MiB | 00m00s [ 21/185] Installing ncurses-libs-0:6.5 100% | 201.4 MiB/s | 1.0 MiB | 00m00s [ 22/185] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 23/185] Installing zlib-ng-compat-0:2 100% | 122.9 MiB/s | 125.9 KiB | 00m00s [ 24/185] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 85.4 KiB | 00m00s [ 25/185] Installing libgpg-error-0:1.5 100% | 62.2 MiB/s | 955.1 KiB | 00m00s [ 26/185] Installing libassuan-0:2.5.7- 100% | 161.6 MiB/s | 165.4 KiB | 00m00s [ 27/185] Installing libgcrypt-0:1.11.2 100% | 249.9 MiB/s | 1.2 MiB | 00m00s [ 28/185] Installing readline-0:8.3-2.f 100% | 282.0 MiB/s | 577.5 KiB | 00m00s [ 29/185] Installing gmp-1:6.3.0-4.fc44 100% | 252.6 MiB/s | 776.1 KiB | 00m00s [ 30/185] Installing xz-libs-1:5.8.1-4. 100% | 217.2 MiB/s | 222.4 KiB | 00m00s [ 31/185] Installing libuuid-0:2.41.3-8 100% | 0.0 B/s | 34.1 KiB | 00m00s [ 32/185] Installing popt-0:1.19-9.fc44 100% | 71.8 MiB/s | 147.0 KiB | 00m00s [ 33/185] Installing libzstd-0:1.5.7-3. 100% | 250.3 MiB/s | 1.0 MiB | 00m00s [ 34/185] Installing elfutils-libelf-0: 100% | 283.1 MiB/s | 1.1 MiB | 00m00s [ 35/185] Installing npth-0:1.8-3.fc44. 100% | 0.0 B/s | 46.2 KiB | 00m00s [ 36/185] Installing libblkid-0:2.41.3- 100% | 276.6 MiB/s | 283.2 KiB | 00m00s [ 37/185] Installing systemd-libs-0:259 100% | 263.9 MiB/s | 2.4 MiB | 00m00s [ 38/185] Installing libxcrypt-0:4.5.2- 100% | 285.0 MiB/s | 291.8 KiB | 00m00s [ 39/185] Installing libsepol-0:3.9-2.f 100% | 279.5 MiB/s | 858.7 KiB | 00m00s [ 40/185] Installing sqlite-libs-0:3.51 100% | 281.4 MiB/s | 1.7 MiB | 00m00s [ 41/185] Installing gnupg2-gpgconf-0:2 100% | 22.1 MiB/s | 271.2 KiB | 00m00s [ 42/185] Installing libattr-0:2.5.2-6. 100% | 0.0 B/s | 25.1 KiB | 00m00s [ 43/185] Installing libacl-0:2.3.2-4.f 100% | 0.0 B/s | 36.4 KiB | 00m00s [ 44/185] Installing libtasn1-0:4.20.0- 100% | 181.4 MiB/s | 185.8 KiB | 00m00s [ 45/185] Installing libunistring-0:1.1 100% | 294.9 MiB/s | 1.8 MiB | 00m00s [ 46/185] Installing libidn2-0:2.3.8-2. 100% | 61.5 MiB/s | 566.3 KiB | 00m00s [ 47/185] Installing crypto-policies-0: 100% | 38.5 MiB/s | 157.7 KiB | 00m00s [ 48/185] Installing gnupg2-verify-0:2. 100% | 25.5 MiB/s | 365.4 KiB | 00m00s [ 49/185] Installing dwz-0:0.16-2.fc44. 100% | 23.1 MiB/s | 307.6 KiB | 00m00s [ 50/185] Installing mpfr-0:4.2.2-2.fc4 100% | 228.2 MiB/s | 701.0 KiB | 00m00s [ 51/185] Installing gawk-0:5.3.2-2.fc4 100% | 98.6 MiB/s | 1.9 MiB | 00m00s [ 52/185] Installing libksba-0:1.6.7-4. 100% | 201.5 MiB/s | 412.7 KiB | 00m00s [ 53/185] Installing unzip-0:6.0-68.fc4 100% | 30.1 MiB/s | 401.1 KiB | 00m00s [ 54/185] Installing file-libs-0:5.46-8 100% | 564.8 MiB/s | 11.9 MiB | 00m00s [ 55/185] Installing file-0:5.46-8.fc44 100% | 8.3 MiB/s | 101.5 KiB | 00m00s [ 56/185] Installing diffutils-0:3.12-3 100% | 93.3 MiB/s | 1.6 MiB | 00m00s [ 57/185] Installing libcap-ng-0:0.8.5- 100% | 0.0 B/s | 62.3 KiB | 00m00s [ 58/185] Installing audit-libs-0:4.1.2 100% | 195.6 MiB/s | 400.7 KiB | 00m00s [ 59/185] Installing libsmartcols-0:2.4 100% | 188.6 MiB/s | 193.1 KiB | 00m00s [ 60/185] Installing libeconf-0:0.7.9-2 100% | 64.7 MiB/s | 66.2 KiB | 00m00s [ 61/185] Installing pam-libs-0:1.7.1-3 100% | 121.6 MiB/s | 124.5 KiB | 00m00s [ 62/185] Installing libcap-0:2.77-1.fc 100% | 16.2 MiB/s | 216.2 KiB | 00m00s [ 63/185] Installing alternatives-0:1.3 100% | 5.5 MiB/s | 67.5 KiB | 00m00s [ 64/185] Installing lua-libs-0:5.4.8-4 100% | 315.7 MiB/s | 323.3 KiB | 00m00s [ 65/185] Installing json-c-0:0.18-7.fc 100% | 81.6 MiB/s | 83.5 KiB | 00m00s [ 66/185] Installing libffi-0:3.5.2-1.f 100% | 78.9 MiB/s | 80.8 KiB | 00m00s [ 67/185] Installing p11-kit-0:0.25.8-1 100% | 119.7 MiB/s | 2.6 MiB | 00m00s [ 68/185] Installing p11-kit-trust-0:0. 100% | 26.7 MiB/s | 547.6 KiB | 00m00s [ 69/185] Installing ngtcp2-0:1.18.0-1. 100% | 151.6 MiB/s | 310.5 KiB | 00m00s [ 70/185] Installing zip-0:3.0-44.fc43. 100% | 47.8 MiB/s | 733.5 KiB | 00m00s [ 71/185] Installing gnupg2-keyboxd-0:2 100% | 41.8 MiB/s | 214.2 KiB | 00m00s [ 72/185] Installing libpsl-0:0.21.5-6. 100% | 75.4 MiB/s | 77.2 KiB | 00m00s [ 73/185] Installing liblastlog2-0:2.41 100% | 8.6 MiB/s | 35.1 KiB | 00m00s [ 74/185] Installing systemd-standalone 100% | 21.1 MiB/s | 302.0 KiB | 00m00s [ 75/185] Installing libusb1-0:1.0.29-4 100% | 168.2 MiB/s | 172.3 KiB | 00m00s [ 76/185] Installing libfdisk-0:2.41.3- 100% | 193.2 MiB/s | 395.7 KiB | 00m00s [ 77/185] Installing libxml2-0:2.12.10- 100% | 98.1 MiB/s | 1.9 MiB | 00m00s [ 78/185] Installing nettle-0:3.10.1-2. 100% | 273.6 MiB/s | 840.6 KiB | 00m00s [ 79/185] Installing gnutls-0:3.8.11-8. 100% | 298.0 MiB/s | 3.6 MiB | 00m00s [ 80/185] Installing bzip2-0:1.0.8-21.f 100% | 7.4 MiB/s | 91.1 KiB | 00m00s [ 81/185] Installing add-determinism-0: 100% | 122.6 MiB/s | 2.6 MiB | 00m00s [ 82/185] Installing cpio-0:2.15-6.fc44 100% | 69.7 MiB/s | 1.1 MiB | 00m00s [ 83/185] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 82.8 KiB | 00m00s [ 84/185] Installing pkgconf-0:2.3.0-3. 100% | 7.0 MiB/s | 86.6 KiB | 00m00s [ 85/185] Installing ed-0:1.22.3-1.fc44 100% | 12.3 MiB/s | 150.9 KiB | 00m00s [ 86/185] Installing patch-0:2.8-3.fc44 100% | 19.5 MiB/s | 239.6 KiB | 00m00s [ 87/185] Installing libatomic-0:16.0.0 100% | 0.0 B/s | 29.2 KiB | 00m00s [ 88/185] Installing libstdc++-0:16.0.0 100% | 318.0 MiB/s | 3.2 MiB | 00m00s [ 89/185] Installing zstd-0:1.5.7-3.fc4 100% | 36.6 MiB/s | 525.0 KiB | 00m00s [ 90/185] Installing lz4-libs-0:1.10.0- 100% | 197.4 MiB/s | 202.1 KiB | 00m00s [ 91/185] Installing jansson-0:2.14-3.f 100% | 88.0 MiB/s | 90.1 KiB | 00m00s [ 92/185] Installing libgomp-0:16.0.0-0 100% | 281.2 MiB/s | 575.8 KiB | 00m00s [ 93/185] Installing libtool-ltdl-0:2.5 100% | 0.0 B/s | 70.7 KiB | 00m00s [ 94/185] Installing gdbm-libs-1:1.23-1 100% | 123.9 MiB/s | 126.9 KiB | 00m00s [ 95/185] Installing cyrus-sasl-lib-0:2 100% | 117.8 MiB/s | 2.4 MiB | 00m00s [ 96/185] Installing xxhash-libs-0:0.8. 100% | 0.0 B/s | 67.1 KiB | 00m00s [ 97/185] Installing libbrotli-0:1.2.0- 100% | 223.4 MiB/s | 914.9 KiB | 00m00s [ 98/185] Installing libnghttp2-0:1.68. 100% | 163.0 MiB/s | 166.9 KiB | 00m00s [ 99/185] Installing libnghttp3-0:1.14. 100% | 152.1 MiB/s | 155.7 KiB | 00m00s [100/185] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 51.4 KiB | 00m00s [101/185] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 60.0 KiB | 00m00s [102/185] Installing libverto-0:0.3.2-1 100% | 0.0 B/s | 26.9 KiB | 00m00s [103/185] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [104/185] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s [105/185] Installing elfutils-libs-0:0. 100% | 190.5 MiB/s | 780.2 KiB | 00m00s [106/185] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB | 00m00s [107/185] Installing pcre2-0:10.47-1.fc 100% | 239.4 MiB/s | 735.4 KiB | 00m00s [108/185] Installing libselinux-0:3.9-5 100% | 205.2 MiB/s | 210.1 KiB | 00m00s [109/185] Installing grep-0:3.12-2.fc44 100% | 56.3 MiB/s | 1.0 MiB | 00m00s [110/185] Installing sed-0:4.9-6.fc44.s 100% | 53.3 MiB/s | 873.2 KiB | 00m00s [111/185] Installing findutils-1:4.10.0 100% | 99.0 MiB/s | 1.9 MiB | 00m00s [112/185] Installing xz-1:5.8.1-4.fc44. 100% | 74.2 MiB/s | 1.3 MiB | 00m00s [113/185] Installing libmount-0:2.41.3- 100% | 191.9 MiB/s | 393.0 KiB | 00m00s [114/185] Installing libsemanage-0:3.9- 100% | 153.2 MiB/s | 313.8 KiB | 00m00s [115/185] Installing util-linux-core-0: 100% | 74.9 MiB/s | 1.4 MiB | 00m00s [116/185] Installing openssl-libs-1:3.5 100% | 270.7 MiB/s | 7.3 MiB | 00m00s [117/185] Installing coreutils-0:9.9-1. 100% | 165.4 MiB/s | 5.8 MiB | 00m00s [118/185] Installing ca-certificates-0: 100% | 1.8 MiB/s | 2.5 MiB | 00m01s [119/185] Installing libarchive-0:3.8.4 100% | 204.1 MiB/s | 1.0 MiB | 00m00s [120/185] Installing krb5-libs-0:1.21.3 100% | 141.7 MiB/s | 2.4 MiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.s390x >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.s390x >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [121/185] Installing tpm2-tss-0:4.1.3-8 100% | 226.9 MiB/s | 1.6 MiB | 00m00s [122/185] Installing gnupg2-gpg-agent-0 100% | 33.7 MiB/s | 725.3 KiB | 00m00s [123/185] Installing ima-evm-utils-libs 100% | 56.4 MiB/s | 57.8 KiB | 00m00s [124/185] Installing libssh-0:0.11.3-1. 100% | 190.4 MiB/s | 584.9 KiB | 00m00s [125/185] Installing util-linux-0:2.41. 100% | 92.3 MiB/s | 3.4 MiB | 00m00s [126/185] Installing gzip-0:1.14-1.fc44 100% | 28.1 MiB/s | 402.9 KiB | 00m00s [127/185] Installing rpm-sequoia-0:1.10 100% | 260.1 MiB/s | 2.6 MiB | 00m00s [128/185] Installing rpm-libs-0:6.0.1-1 100% | 247.2 MiB/s | 1.0 MiB | 00m00s [129/185] Installing libfsverity-0:1.6- 100% | 0.0 B/s | 25.1 KiB | 00m00s [130/185] Installing libevent-0:2.1.12- 100% | 240.6 MiB/s | 985.5 KiB | 00m00s [131/185] Installing openldap-0:2.6.10- 100% | 219.1 MiB/s | 673.1 KiB | 00m00s [132/185] Installing gnupg2-dirmngr-0:2 100% | 32.4 MiB/s | 663.9 KiB | 00m00s [133/185] Installing gnupg2-0:2.4.8-4.f 100% | 187.6 MiB/s | 6.6 MiB | 00m00s [134/185] Installing rpm-sign-libs-0:6. 100% | 0.0 B/s | 36.3 KiB | 00m00s [135/185] Installing rpm-build-libs-0:6 100% | 266.3 MiB/s | 272.7 KiB | 00m00s [136/185] Installing gpgverify-0:2.2-3. 100% | 0.0 B/s | 9.4 KiB | 00m00s [137/185] Installing ngtcp2-crypto-ossl 100% | 0.0 B/s | 48.0 KiB | 00m00s [138/185] Installing libcurl-0:8.18.0~r 100% | 251.4 MiB/s | 1.0 MiB | 00m00s [139/185] Installing elfutils-debuginfo 100% | 5.8 MiB/s | 77.8 KiB | 00m00s [140/185] Installing binutils-0:2.45.50 100% | 295.8 MiB/s | 28.7 MiB | 00m00s [141/185] Installing elfutils-0:0.194-2 100% | 142.2 MiB/s | 3.0 MiB | 00m00s [142/185] Installing gdb-minimal-0:16.3 100% | 242.2 MiB/s | 15.3 MiB | 00m00s [143/185] Installing debugedit-0:5.2-3. 100% | 16.6 MiB/s | 220.6 KiB | 00m00s [144/185] Installing curl-0:8.18.0~rc2- 100% | 24.7 MiB/s | 506.0 KiB | 00m00s [145/185] Installing rpm-0:6.0.1-1.fc44 100% | 74.8 MiB/s | 2.5 MiB | 00m00s [146/185] Installing cmake-srpm-macros- 100% | 0.0 B/s | 804.0 B | 00m00s [147/185] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [148/185] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [149/185] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [150/185] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.3 KiB | 00m00s [151/185] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [152/185] Installing tar-2:1.35-6.fc43. 100% | 131.3 MiB/s | 3.0 MiB | 00m00s [153/185] Installing linkdupes-0:0.7.2- 100% | 63.5 MiB/s | 975.1 KiB | 00m00s [154/185] Installing libselinux-utils-0 100% | 18.7 MiB/s | 287.0 KiB | 00m00s [155/185] Installing policycoreutils-0: 100% | 34.9 MiB/s | 893.5 KiB | 00m00s [156/185] Installing selinux-policy-0:4 100% | 1.9 MiB/s | 33.6 KiB | 00m00s [157/185] Installing selinux-policy-tar 100% | 184.1 MiB/s | 14.9 MiB | 00m00s [158/185] Installing build-reproducibil 100% | 0.0 B/s | 1.5 KiB | 00m00s [159/185] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [160/185] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [161/185] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [162/185] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [163/185] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [164/185] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [165/185] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [166/185] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [167/185] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [168/185] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [169/185] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [170/185] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [171/185] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [172/185] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [173/185] Installing pkgconf-pkg-config 100% | 126.7 KiB/s | 1.8 KiB | 00m00s [174/185] Installing rpm-build-0:6.0.1- 100% | 20.3 MiB/s | 290.7 KiB | 00m00s [175/185] Installing pyproject-srpm-mac 100% | 0.0 B/s | 2.5 KiB | 00m00s [176/185] Installing redhat-rpm-config- 100% | 92.7 MiB/s | 189.9 KiB | 00m00s [177/185] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [178/185] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [179/185] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 63.0 KiB | 00m00s [180/185] Installing R-srpm-macros-0:1. 100% | 0.0 B/s | 4.0 KiB | 00m00s [181/185] Installing python-srpm-macros 100% | 0.0 B/s | 52.9 KiB | 00m00s [182/185] Installing rpm-plugin-selinux 100% | 0.0 B/s | 12.6 KiB | 00m00s [183/185] Installing which-0:2.23-3.fc4 100% | 4.9 MiB/s | 85.4 KiB | 00m00s [184/185] Installing shadow-utils-2:4.1 100% | 130.2 MiB/s | 4.0 MiB | 00m00s [185/185] Installing info-0:7.2-7.fc44. 100% | 52.3 KiB/s | 397.4 KiB | 00m08s Warning: skipped OpenPGP checks for 179 packages from repositories: copr_base, https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.0-1.fc44.noarch add-determinism-0.7.2-2.fc44.s390x alternatives-1.33-3.fc44.s390x ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.2-2.fc44.s390x bash-5.3.0-2.fc44.s390x binutils-2.45.50-12.fc44.s390x build-reproducibility-srpm-macros-0.7.2-2.fc44.noarch bzip2-1.0.8-21.fc44.s390x bzip2-libs-1.0.8-21.fc44.s390x ca-certificates-2025.2.80_v9.0.304-2.fc44.noarch cmake-srpm-macros-3.31.10-3.fc44.noarch coreutils-9.9-1.fc44.s390x coreutils-common-9.9-1.fc44.s390x cpio-2.15-6.fc44.s390x crypto-policies-20251128-1.git19878fe.fc44.noarch curl-8.18.0~rc2-1.fc44.s390x cyrus-sasl-lib-2.1.28-33.fc44.s390x debugedit-5.2-3.fc44.s390x diffutils-3.12-3.fc44.s390x dwz-0.16-2.fc44.s390x ed-1.22.3-1.fc44.s390x efi-srpm-macros-6-5.fc44.noarch elfutils-0.194-2.fc44.s390x elfutils-debuginfod-client-0.194-2.fc44.s390x elfutils-default-yama-scope-0.194-2.fc44.noarch elfutils-libelf-0.194-2.fc44.s390x elfutils-libs-0.194-2.fc44.s390x fedora-gpg-keys-44-0.1.noarch fedora-release-44-0.10.noarch fedora-release-common-44-0.10.noarch fedora-release-identity-basic-44-0.10.noarch fedora-repos-44-0.1.noarch fedora-repos-rawhide-44-0.1.noarch file-5.46-8.fc44.s390x file-libs-5.46-8.fc44.s390x filesystem-3.18-51.fc44.s390x filesystem-srpm-macros-3.18-51.fc44.noarch findutils-4.10.0-6.fc44.s390x fonts-srpm-macros-5.0.0-1.fc44.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-2-1.fc44.noarch gawk-5.3.2-2.fc44.s390x gdb-minimal-16.3-6.fc44.s390x gdbm-libs-1.23-10.fc44.s390x ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42.9000-17.fc44.s390x glibc-common-2.42.9000-17.fc44.s390x glibc-gconv-extra-2.42.9000-17.fc44.s390x glibc-minimal-langpack-2.42.9000-17.fc44.s390x gmp-6.3.0-4.fc44.s390x gnat-srpm-macros-6-8.fc43.noarch gnulib-l10n-20241231-1.fc44.noarch gnupg2-2.4.8-4.fc44.s390x gnupg2-dirmngr-2.4.8-4.fc44.s390x gnupg2-gpg-agent-2.4.8-4.fc44.s390x gnupg2-gpgconf-2.4.8-4.fc44.s390x gnupg2-keyboxd-2.4.8-4.fc44.s390x gnupg2-verify-2.4.8-4.fc44.s390x gnutls-3.8.11-8.fc44.s390x go-srpm-macros-3.8.0-1.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc44.s390x gzip-1.14-1.fc44.s390x ima-evm-utils-libs-1.6.2-7.fc44.s390x info-7.2-7.fc44.s390x jansson-2.14-3.fc44.s390x java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc44.s390x kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc44.s390x krb5-libs-1.21.3-10.fc44.s390x libacl-2.3.2-4.fc44.s390x libarchive-3.8.4-1.fc44.s390x libassuan-2.5.7-4.fc44.s390x libatomic-16.0.0-0.3.fc44.s390x libattr-2.5.2-6.fc43.s390x libblkid-2.41.3-8.fc44.s390x libbrotli-1.2.0-1.fc44.s390x libcap-2.77-1.fc44.s390x libcap-ng-0.8.5-8.fc44.s390x libcom_err-1.47.3-3.fc44.s390x libcurl-8.18.0~rc2-1.fc44.s390x libeconf-0.7.9-2.fc44.s390x libevent-2.1.12-16.fc44.s390x libfdisk-2.41.3-8.fc44.s390x libffi-3.5.2-1.fc44.s390x libfsverity-1.6-3.fc44.s390x libgcc-16.0.0-0.3.fc44.s390x libgcrypt-1.11.2-1.fc44.s390x libgomp-16.0.0-0.3.fc44.s390x libgpg-error-1.58-1.fc44.s390x libidn2-2.3.8-2.fc44.s390x libksba-1.6.7-4.fc44.s390x liblastlog2-2.41.3-8.fc44.s390x libmount-2.41.3-8.fc44.s390x libnghttp2-1.68.0-2.fc44.s390x libnghttp3-1.14.0-1.fc44.s390x libpkgconf-2.3.0-3.fc44.s390x libpsl-0.21.5-6.fc44.s390x libselinux-3.9-5.fc44.s390x libselinux-utils-3.9-5.fc44.s390x libsemanage-3.9-4.fc44.s390x libsepol-3.9-2.fc44.s390x libsmartcols-2.41.3-8.fc44.s390x libssh-0.11.3-1.fc44.s390x libssh-config-0.11.3-1.fc44.noarch libstdc++-16.0.0-0.3.fc44.s390x libtasn1-4.20.0-2.fc44.s390x libtool-ltdl-2.5.4-9.fc44.s390x libunistring-1.1-10.fc44.s390x libusb1-1.0.29-4.fc44.s390x libuuid-2.41.3-8.fc44.s390x libverto-0.3.2-11.fc43.s390x libxcrypt-4.5.2-2.fc44.s390x libxml2-2.12.10-5.fc44.s390x libzstd-1.5.7-3.fc44.s390x linkdupes-0.7.2-2.fc44.s390x lua-libs-5.4.8-4.fc44.s390x lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc44.s390x mpfr-4.2.2-2.fc44.s390x ncurses-base-6.5-8.20250614.fc44.noarch ncurses-libs-6.5-8.20250614.fc44.s390x nettle-3.10.1-2.fc44.s390x ngtcp2-1.18.0-1.fc44.s390x ngtcp2-crypto-ossl-1.18.0-1.fc44.s390x npth-1.8-3.fc44.s390x ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.10-4.fc44.s390x openssl-libs-3.5.4-1.fc44.s390x p11-kit-0.25.8-1.fc44.s390x p11-kit-trust-0.25.8-1.fc44.s390x package-notes-srpm-macros-0.5-14.fc43.noarch pam-libs-1.7.1-3.fc43.s390x patch-2.8-3.fc44.s390x pcre2-10.47-1.fc44.s390x pcre2-syntax-10.47-1.fc44.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc44.s390x pkgconf-m4-2.3.0-3.fc44.noarch pkgconf-pkg-config-2.3.0-3.fc44.s390x policycoreutils-3.9-7.fc44.s390x popt-1.19-9.fc44.s390x publicsuffix-list-dafsa-20250616-2.fc43.noarch pyproject-srpm-macros-1.18.6-1.fc44.noarch python-srpm-macros-3.14-9.fc44.noarch qt5-srpm-macros-5.15.18-1.fc44.noarch qt6-srpm-macros-6.10.1-1.fc44.noarch readline-8.3-2.fc43.s390x redhat-rpm-config-343-19.fc44.noarch rpm-6.0.1-1.fc44.s390x rpm-build-6.0.1-1.fc44.s390x rpm-build-libs-6.0.1-1.fc44.s390x rpm-libs-6.0.1-1.fc44.s390x rpm-plugin-selinux-6.0.1-1.fc44.s390x rpm-sequoia-1.10.0-1.fc44.s390x rpm-sign-libs-6.0.1-1.fc44.s390x rust-srpm-macros-28.4-1.fc44.noarch sed-4.9-6.fc44.s390x selinux-policy-42.19-1.fc44.noarch selinux-policy-targeted-42.19-1.fc44.noarch setup-2.15.0-27.fc44.noarch shadow-utils-4.18.0-7.fc44.s390x sqlite-libs-3.51.0-1.fc44.s390x systemd-libs-259-1.fc44.s390x systemd-standalone-sysusers-259-1.fc44.s390x tar-1.35-6.fc43.s390x tpm2-tss-4.1.3-8.fc43.s390x tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-68.fc44.s390x util-linux-2.41.3-8.fc44.s390x util-linux-core-2.41.3-8.fc44.s390x which-2.23-3.fc43.s390x xxhash-libs-0.8.3-3.fc43.s390x xz-5.8.1-4.fc44.s390x xz-libs-5.8.1-4.fc44.s390x zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.s390x zlib-ng-compat-2.3.2-2.fc44.s390x zstd-1.5.7-3.fc44.s390x Start: buildsrpm Start: rpmbuild -bs Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1758499200 Wrote: /builddir/build/SRPMS/python-pysam-0.23.3-3.fc44.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1767276016.222837/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-d4x6497d/python-pysam/python-pysam.spec) Config(child) 0 minutes 32 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-pysam-0.23.3-3.fc44.src.rpm) Config(fedora-rawhide-s390x) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1767276016.222837/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1767276016.222837/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1767276016.222837/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-1.fc44.s390x rpm-sequoia-1.10.0-1.fc44.s390x dnf5-5.3.0.0-3.fc44.s390x dnf5-plugins-5.3.0.0-3.fc44.s390x Finish: chroot init Start: build phase for python-pysam-0.23.3-3.fc44.src.rpm Start: build setup for python-pysam-0.23.3-3.fc44.src.rpm Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1758499200 Wrote: /builddir/build/SRPMS/python-pysam-0.23.3-3.fc44.src.rpm Updating and loading repositories: Additional repo https_kojipkgs_fedorap 100% | 9.6 KiB/s | 3.5 KiB | 00m00s Copr repository 100% | 4.2 KiB/s | 1.5 KiB | 00m00s fedora 100% | 11.5 KiB/s | 5.6 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: bzip2-devel s390x 0:1.0.8-21.fc44 copr_base 309.8 KiB gcc s390x 0:16.0.0-0.3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 95.0 MiB python3-cython s390x 0:3.2.3-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 19.1 MiB python3-devel s390x 0:3.14.2-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.9 MiB python3-sphinx noarch 1:8.2.3-17.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 12.3 MiB python3-sphinx_rtd_theme noarch 0:3.0.2-8.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 327.4 KiB xz-devel s390x 1:5.8.1-4.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 258.8 KiB zlib-ng-compat-devel s390x 0:2.3.2-2.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 107.0 KiB Installing dependencies: annobin-docs noarch 0:13.04-3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 99.2 KiB annobin-plugin-gcc s390x 0:13.04-3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 695.3 KiB cmake-filesystem s390x 0:3.31.10-3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 0.0 B cpp s390x 0:16.0.0-0.3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 32.1 MiB expat s390x 0:2.7.3-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 328.6 KiB fontawesome4-fonts noarch 1:4.7.0-25.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 296.6 KiB fonts-filesystem noarch 1:5.0.0-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 0.0 B gcc-plugin-annobin s390x 0:16.0.0-0.3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 52.8 KiB glibc-devel s390x 0:2.42.9000-17.fc44 fedora 3.7 MiB google-roboto-slab-fonts noarch 0:1.100263-0.27.20150923git.fc44 fedora 699.6 KiB kernel-headers s390x 0:6.19.0-0.rc2.20.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 6.8 MiB lato-fonts noarch 0:2.015-24.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 11.3 MiB libasan s390x 0:16.0.0-0.3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.9 MiB libmpc s390x 0:1.3.1-8.fc44 copr_base 156.3 KiB libubsan s390x 0:16.0.0-0.3.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 499.9 KiB libxcrypt-devel s390x 0:4.5.2-2.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 31.0 KiB make s390x 1:4.4.1-11.fc44 copr_base 1.9 MiB mpdecimal s390x 0:4.0.1-2.fc44 copr_base 236.8 KiB pyproject-rpm-macros noarch 0:1.18.6-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 115.6 KiB python-pip-wheel noarch 0:25.3-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.2 MiB python-rpm-macros noarch 0:3.14-9.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 27.6 KiB python3 s390x 0:3.14.2-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 24.7 KiB python3-babel noarch 0:2.17.0-6.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 30.3 MiB python3-charset-normalizer noarch 0:3.4.4-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 356.2 KiB python3-docutils noarch 0:0.22.3-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 5.5 MiB python3-idna noarch 0:3.11-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 738.4 KiB python3-imagesize noarch 0:1.4.1-14.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 36.0 KiB python3-jinja2 noarch 0:3.1.6-6.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 3.1 MiB python3-libs s390x 0:3.14.2-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 43.4 MiB python3-markupsafe s390x 0:3.0.2-6.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 61.3 KiB python3-packaging noarch 0:25.0-7.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 607.4 KiB python3-pygments noarch 0:2.19.1-7.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 11.3 MiB python3-requests noarch 0:2.32.5-2.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 476.9 KiB python3-roman-numerals-py noarch 0:3.1.0-5.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 40.4 KiB python3-rpm-generators noarch 0:14-13.fc43 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 81.7 KiB python3-rpm-macros noarch 0:3.14-9.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 6.5 KiB python3-snowballstemmer noarch 0:3.0.1-8.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.8 MiB python3-sphinx-theme-alabaster noarch 0:0.7.16-11.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 42.0 KiB python3-sphinxcontrib-jquery noarch 0:4.1-14.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 382.5 KiB python3-urllib3 noarch 0:2.6.2-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.1 MiB tzdata noarch 0:2025c-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 1.2 MiB Transaction Summary: Installing: 49 packages Total size of inbound packages is 87 MiB. Need to download 327 KiB. After this operation, 292 MiB extra will be used (install 292 MiB, remove 0 B). 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python3-libs-0:3.14. 100% | 293.9 MiB/s | 43.8 MiB | 00m00s [18/51] Installing python3-0:3.14.2-1.f 100% | 2.0 MiB/s | 26.4 KiB | 00m00s [19/51] Installing python3-docutils-0:0 100% | 159.5 MiB/s | 5.6 MiB | 00m00s [20/51] Installing python3-packaging-0: 100% | 201.8 MiB/s | 619.9 KiB | 00m00s [21/51] Installing python3-idna-0:3.11- 100% | 242.5 MiB/s | 744.9 KiB | 00m00s [22/51] Installing python3-urllib3-0:2. 100% | 226.9 MiB/s | 1.1 MiB | 00m00s [23/51] Installing python3-rpm-generato 100% | 40.5 MiB/s | 82.9 KiB | 00m00s [24/51] Installing python3-babel-0:2.17 100% | 272.3 MiB/s | 30.5 MiB | 00m00s [25/51] Installing python3-imagesize-0: 100% | 19.1 MiB/s | 39.1 KiB | 00m00s [26/51] Installing python3-pygments-0:2 100% | 198.1 MiB/s | 11.5 MiB | 00m00s [27/51] Installing python3-roman-numera 100% | 42.4 MiB/s | 43.4 KiB | 00m00s [28/51] Installing python3-snowballstem 100% | 265.7 MiB/s | 1.9 MiB | 00m00s [29/51] Installing python3-sphinx-theme 100% | 45.5 MiB/s | 46.6 KiB | 00m00s 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Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1758499200 Wrote: /builddir/build/SRPMS/python-pysam-0.23.3-3.fc44.src.rpm Updating and loading repositories: Additional repo https_kojipkgs_fedorap 100% | 3.6 KiB/s | 3.5 KiB | 00m01s Copr repository 100% | 1.6 KiB/s | 1.5 KiB | 00m01s fedora 100% | 5.2 KiB/s | 5.6 KiB | 00m01s Repositories loaded. Package "bzip2-devel-1.0.8-21.fc44.s390x" is already installed. Package "gcc-16.0.0-0.3.fc44.s390x" is already installed. Package "python3-devel-3.14.2-1.fc44.s390x" is already installed. Package "python3-sphinx_rtd_theme-3.0.2-8.fc44.noarch" is already installed. Package "python3-cython-3.2.3-1.fc44.s390x" is already installed. Package "python3-sphinx-1:8.2.3-17.fc44.noarch" is already installed. Package "xz-devel-1:5.8.1-4.fc44.s390x" is already installed. Package "zlib-ng-compat-devel-2.3.2-2.fc44.s390x" is already installed. Nothing to do. Finish: build setup for python-pysam-0.23.3-3.fc44.src.rpm Start: rpmbuild python-pysam-0.23.3-3.fc44.src.rpm Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1758499200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.SWuDhz Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.DAxHaY + umask 022 + cd /builddir/build/BUILD/python-pysam-0.23.3-build + cd /builddir/build/BUILD/python-pysam-0.23.3-build + rm -rf pysam-0.23.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pysam-0.23.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pysam-0.23.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . ++ grep -rl '/\* Generated by Cython' + rm pysam/libcvcf.c pysam/libcutils.c pysam/libctabixproxies.c pysam/libctabix.c pysam/libcsamtools.c pysam/libcsamfile.c pysam/libchtslib.c pysam/libcfaidx.c pysam/libcbgzf.c pysam/libcbcftools.c pysam/libcbcf.c pysam/libcalignmentfile.c pysam/libcalignedsegment.c + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.OEftc1 + umask 022 + cd /builddir/build/BUILD/python-pysam-0.23.3-build + cd pysam-0.23.3 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pysam-0.23.3-build/pyproject-wheeldir --output /builddir/build/BUILD/python-pysam-0.23.3-build/python-pysam-0.23.3-3.fc44.s390x-pyproject-buildrequires Handling setuptools>=59.0 from build-system.requires Requirement not satisfied: setuptools>=59.0 Handling Cython>=0.29.12,<4 from build-system.requires Requirement satisfied: Cython>=0.29.12,<4 (installed: Cython 3.2.3) Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-pysam-0.23.3-build/python-pysam-0.23.3-3.fc44.s390x-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pysam-0.23.3-3.fc44.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Additional repo https_kojipkgs_fedorap 100% | 4.7 KiB/s | 3.5 KiB | 00m01s Copr repository 100% | 2.1 KiB/s | 1.5 KiB | 00m01s fedora 100% | 6.5 KiB/s | 5.6 KiB | 00m01s Repositories loaded. Package "bzip2-devel-1.0.8-21.fc44.s390x" is already installed. Package "gcc-16.0.0-0.3.fc44.s390x" is already installed. Package "pyproject-rpm-macros-1.18.6-1.fc44.noarch" is already installed. Package "python3-devel-3.14.2-1.fc44.s390x" is already installed. Package "python3-sphinx_rtd_theme-3.0.2-8.fc44.noarch" is already installed. Package "python3-cython-3.2.3-1.fc44.s390x" is already installed. Package "python3-packaging-25.0-7.fc44.noarch" is already installed. Package "python3-sphinx-1:8.2.3-17.fc44.noarch" is already installed. Package "xz-devel-1:5.8.1-4.fc44.s390x" is already installed. Package "zlib-ng-compat-devel-2.3.2-2.fc44.s390x" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 0:25.3-1.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 11.2 MiB python3-setuptools noarch 0:80.9.0-2.fc44 https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch 8.6 MiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 4 MiB. Need to download 0 B. After this operation, 20 MiB extra will be used (install 20 MiB, remove 0 B). [1/2] python3-pip-0:25.3-1.fc44.noarch 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [2/2] python3-setuptools-0:80.9.0-2.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction [1/4] Verify package files 100% | 222.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 62.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-setuptools-0:8 100% | 195.3 MiB/s | 8.8 MiB | 00m00s [4/4] Installing python3-pip-0:25.3-1.f 100% | 135.1 MiB/s | 11.5 MiB | 00m00s Warning: skipped OpenPGP checks for 2 packages from repository: https_kojipkgs_fedoraproject_org_repos_f44_build_side_124978_latest_basearch Complete! Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1758499200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.xECyOs + umask 022 + cd /builddir/build/BUILD/python-pysam-0.23.3-build + cd pysam-0.23.3 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pysam-0.23.3-build/pyproject-wheeldir --output /builddir/build/BUILD/python-pysam-0.23.3-build/python-pysam-0.23.3-3.fc44.s390x-pyproject-buildrequires Handling setuptools>=59.0 from build-system.requires Requirement satisfied: setuptools>=59.0 (installed: setuptools 80.9.0) Handling Cython>=0.29.12,<4 from build-system.requires Requirement satisfied: Cython>=0.29.12,<4 (installed: Cython 3.2.3) # pysam: Cython 3.2.3 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' # pysam: Cython 3.2.3 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running dist_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam-0.23.3.dist-info' + cat /builddir/build/BUILD/python-pysam-0.23.3-build/python-pysam-0.23.3-3.fc44.s390x-pyproject-buildrequires + rm -rfv pysam-0.23.3.dist-info/ removed 'pysam-0.23.3.dist-info/licenses/AUTHORS' removed 'pysam-0.23.3.dist-info/licenses/COPYING' removed directory 'pysam-0.23.3.dist-info/licenses' removed 'pysam-0.23.3.dist-info/METADATA' removed 'pysam-0.23.3.dist-info/top_level.txt' removed directory 'pysam-0.23.3.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pysam-0.23.3-3.fc44.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Additional repo https_kojipkgs_fedorap 100% | 1.7 KiB/s | 3.5 KiB | 00m02s Copr repository 100% | 781.0 B/s | 1.5 KiB | 00m02s fedora 100% | 2.6 KiB/s | 5.6 KiB | 00m02s Repositories loaded. Package "bzip2-devel-1.0.8-21.fc44.s390x" is already installed. Package "gcc-16.0.0-0.3.fc44.s390x" is already installed. Package "pyproject-rpm-macros-1.18.6-1.fc44.noarch" is already installed. Package "python3-devel-3.14.2-1.fc44.s390x" is already installed. Package "python3-sphinx_rtd_theme-3.0.2-8.fc44.noarch" is already installed. Package "python3-cython-3.2.3-1.fc44.s390x" is already installed. Package "python3-packaging-25.0-7.fc44.noarch" is already installed. Package "python3-pip-25.3-1.fc44.noarch" is already installed. Package "python3-setuptools-80.9.0-2.fc44.noarch" is already installed. Package "python3-sphinx-1:8.2.3-17.fc44.noarch" is already installed. Package "xz-devel-1:5.8.1-4.fc44.s390x" is already installed. Package "zlib-ng-compat-devel-2.3.2-2.fc44.s390x" is already installed. Nothing to do. Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1758499200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.ovCYIm + umask 022 + cd /builddir/build/BUILD/python-pysam-0.23.3-build + cd pysam-0.23.3 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir + RPM_TOXENV=py314 + FEDORA=44 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pysam-0.23.3-build/pyproject-wheeldir --output /builddir/build/BUILD/python-pysam-0.23.3-build/python-pysam-0.23.3-3.fc44.s390x-pyproject-buildrequires Handling setuptools>=59.0 from build-system.requires Requirement satisfied: setuptools>=59.0 (installed: setuptools 80.9.0) Handling Cython>=0.29.12,<4 from build-system.requires Requirement satisfied: Cython>=0.29.12,<4 (installed: Cython 3.2.3) # pysam: Cython 3.2.3 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' # pysam: Cython 3.2.3 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running dist_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam-0.23.3.dist-info' + cat /builddir/build/BUILD/python-pysam-0.23.3-build/python-pysam-0.23.3-3.fc44.s390x-pyproject-buildrequires + rm -rfv pysam-0.23.3.dist-info/ removed 'pysam-0.23.3.dist-info/licenses/AUTHORS' removed 'pysam-0.23.3.dist-info/licenses/COPYING' removed directory 'pysam-0.23.3.dist-info/licenses' removed 'pysam-0.23.3.dist-info/METADATA' removed 'pysam-0.23.3.dist-info/top_level.txt' removed directory 'pysam-0.23.3.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.qpN84g + umask 022 + cd /builddir/build/BUILD/python-pysam-0.23.3-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pysam-0.23.3 + export FORCE_CYTHON=1 + FORCE_CYTHON=1 + mkdir -p /builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-pysam-0.23.3-build/pyproject-wheeldir Processing /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) # pysam: Cython 3.2.3 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running dist_info creating /builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir/pip-modern-metadata-0zdwrqy1/pysam.egg-info writing /builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir/pip-modern-metadata-0zdwrqy1/pysam.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir/pip-modern-metadata-0zdwrqy1/pysam.egg-info/dependency_links.txt writing top-level names to /builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir/pip-modern-metadata-0zdwrqy1/pysam.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir/pip-modern-metadata-0zdwrqy1/pysam.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir/pip-modern-metadata-0zdwrqy1/pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file '/builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir/pip-modern-metadata-0zdwrqy1/pysam.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir/pip-modern-metadata-0zdwrqy1/pysam-0.23.3.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: pysam Building wheel for pysam (pyproject.toml): started Running command Building wheel for pysam (pyproject.toml) # pysam: Cython 3.2.3 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.14/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running bdist_wheel running build running build_py creating build/lib.linux-s390x-cpython-314/pysam copying pysam/config.py -> build/lib.linux-s390x-cpython-314/pysam copying pysam/version.py -> build/lib.linux-s390x-cpython-314/pysam copying pysam/utils.py -> build/lib.linux-s390x-cpython-314/pysam copying pysam/samtools.py -> build/lib.linux-s390x-cpython-314/pysam copying pysam/bcftools.py -> build/lib.linux-s390x-cpython-314/pysam copying pysam/__init__.py -> build/lib.linux-s390x-cpython-314/pysam copying pysam/Pileup.py -> build/lib.linux-s390x-cpython-314/pysam creating build/lib.linux-s390x-cpython-314/pysam/include copying pysam/include/__init__.py -> build/lib.linux-s390x-cpython-314/pysam/include running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.htslib.cram' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.cram' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.cram' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.cram' to be distributed and are already explicitly excluding 'pysam.include.htslib.cram' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.htslib.htscodecs.htscodecs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.htscodecs.htscodecs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.htscodecs.htscodecs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.htscodecs.htscodecs' to be distributed and are already explicitly excluding 'pysam.include.htslib.htscodecs.htscodecs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.htslib.m4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.m4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.m4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.m4' to be distributed and are already explicitly excluding 'pysam.include.htslib.m4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.htslib.os' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.os' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.os' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.os' to be distributed and are already explicitly excluding 'pysam.include.htslib.os' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.14/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/cbcftools_util.h -> build/lib.linux-s390x-cpython-314/pysam copying pysam/conftest_cstd.c -> build/lib.linux-s390x-cpython-314/pysam copying pysam/csamtools_util.h -> build/lib.linux-s390x-cpython-314/pysam copying pysam/htslib_util.c -> build/lib.linux-s390x-cpython-314/pysam copying pysam/htslib_util.h -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcalignedsegment.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcalignedsegment.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcalignedsegment.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcalignmentfile.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcalignmentfile.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcalignmentfile.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcbcf.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcbcf.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcbcf.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcbcftools.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcbcftools.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcbcftools.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcbgzf.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcbgzf.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcbgzf.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcfaidx.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcfaidx.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcfaidx.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libchtslib.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libchtslib.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libchtslib.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcsamfile.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcsamfile.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcsamfile.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcsamtools.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcsamtools.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcsamtools.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libctabix.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libctabix.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libctabix.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libctabixproxies.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libctabixproxies.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libctabixproxies.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcutils.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcutils.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcutils.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcvcf.pxd -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcvcf.pyi -> build/lib.linux-s390x-cpython-314/pysam copying pysam/libcvcf.pyx -> build/lib.linux-s390x-cpython-314/pysam copying pysam/py.typed -> build/lib.linux-s390x-cpython-314/pysam copying pysam/pysam_stream.h -> build/lib.linux-s390x-cpython-314/pysam copying pysam/pysam_util.c -> build/lib.linux-s390x-cpython-314/pysam copying pysam/pysam_util.h -> build/lib.linux-s390x-cpython-314/pysam copying pysam/version.h -> build/lib.linux-s390x-cpython-314/pysam copying pysam/version.pyi -> build/lib.linux-s390x-cpython-314/pysam creating build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/LICENSE -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/README -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/amplicon_stats.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/amplicon_stats.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam2depth.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam2depth.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_addrprg.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_addrprg.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_ampliconclip.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_ampliconclip.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_ampliconclip.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_aux.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_aux.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_cat.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_cat.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_color.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_color.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_consensus.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_consensus.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_fastq.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_fastq.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_flags.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_flags.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_import.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_import.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_index.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_index.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_lpileup.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_lpileup.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_lpileup.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_markdup.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_markdup.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_mate.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_mate.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_md.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_md.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_plbuf.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_plbuf.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_plbuf.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_plcmd.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_plcmd.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_quickcheck.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_quickcheck.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_reheader.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_reheader.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_rmdup.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_rmdup.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_rmdupse.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_rmdupse.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_samples.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_samples.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_sort.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_sort.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_split.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_split.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_stat.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bam_stat.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bamshuf.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bamshuf.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bamtk.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bamtk.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bedcov.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bedcov.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bedidx.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bedidx.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/bedidx.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/consensus_pileup.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/consensus_pileup.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/consensus_pileup.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/coverage.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/coverage.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/cram_size.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/cram_size.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/cut_target.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/cut_target.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/dict.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/dict.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/faidx.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/faidx.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/padding.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/padding.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/phase.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/phase.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/reference.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/reference.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/reset.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/reset.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/sam_opts.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/sam_opts.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/sam_opts.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/sam_utils.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/sam_utils.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/sam_utils.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/sam_view.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/sam_view.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/sample.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/sample.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/sample.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/samtools.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/samtools.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/samtools.pysam.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/splaysort.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/stats.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/stats.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/stats_isize.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/stats_isize.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/stats_isize.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/tmp_file.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/tmp_file.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/tmp_file.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools copying samtools/version.sh -> build/lib.linux-s390x-cpython-314/pysam/include/samtools creating build/lib.linux-s390x-cpython-314/pysam/include/samtools/lz4 copying samtools/lz4/LICENSE -> build/lib.linux-s390x-cpython-314/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/samtools/lz4 copying samtools/lz4/lz4.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools/lz4 copying samtools/config.h -> build/lib.linux-s390x-cpython-314/pysam/include/samtools creating build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/HMM.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/HMM.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/HMM.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/LICENSE -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/README -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/abuf.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/abuf.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/abuf.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam2bcf.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam2bcf.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam2bcf.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam2bcf_indel.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam2bcf_indel.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam_sample.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam_sample.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bam_sample.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bcftools.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bcftools.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bcftools.pysam.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bin.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bin.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/bin.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/call.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/ccall.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/ccall.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/cigar_state.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/cols.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/cols.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/cols.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/consensus.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/consensus.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/convert.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/convert.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/convert.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/csq.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/csq.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/dbuf.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/dist.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/dist.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/dist.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/edlib.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/edlib.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/edlib.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/em.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/em.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/extsort.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/extsort.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/extsort.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/filter.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/filter.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/filter.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/gff.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/gff.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/gff.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/gvcf.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/gvcf.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/gvcf.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/hclust.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/hclust.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/hclust.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/hex.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/khash_str2str.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/kheap.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/kmin.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/kmin.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/kmin.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/main.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/main.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/mcall.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/mcall.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/mpileup.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/mpileup.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/mw.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/ploidy.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/ploidy.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/ploidy.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/prob1.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/prob1.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/prob1.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/rbuf.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/read_consensus.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/read_consensus.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/read_consensus.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/regidx.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/regidx.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/regidx.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/reheader.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/reheader.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/smpl_ilist.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/smpl_ilist.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/smpl_ilist.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/str_finder.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/str_finder.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/str_finder.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/tabix.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/tabix.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/tsv2vcf.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/tsv2vcf.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/tsv2vcf.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/utlist.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/variantkey.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfannotate.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfannotate.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfbuf.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfbuf.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfbuf.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfcall.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfcall.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfcnv.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfcnv.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfconcat.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfconcat.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfconvert.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfconvert.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcffilter.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcffilter.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfgtcheck.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfgtcheck.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfhead.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfhead.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfindex.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfindex.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfisec.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfisec.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfmerge.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfmerge.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfnorm.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfnorm.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfplugin.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfplugin.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfquery.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfquery.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfroh.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfroh.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfsom.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfsom.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfsort.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfsort.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfstats.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfstats.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfview.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcfview.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcmp.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcmp.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/vcmp.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/version.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/version.c.pysam.c -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/version.sh -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools copying bcftools/config.h -> build/lib.linux-s390x-cpython-314/pysam/include/bcftools creating build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/LICENSE -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/Makefile -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/README -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/bcf_sr_sort.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/bcf_sr_sort.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/bgzf.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/builddir_vars.mk.in -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/config.guess -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/config.h.in -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/config.mk.in -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/config.sub -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/configure -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/configure.ac -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/errmod.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/faidx.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/fuzz_settings.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/header.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/header.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/hfile.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/hfile_gcs.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/hfile_internal.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/hfile_libcurl.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/hfile_s3.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/hfile_s3_write.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/hts.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/hts_expr.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/hts_internal.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/hts_os.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/hts_time_funcs.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/htscodecs_bundled.mk -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/htscodecs_external.mk -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/htslib.mk -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/htslib.pc.in -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/htslib_vars.mk -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/kfunc.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/kstring.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/md5.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/multipart.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/plugin.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/probaln.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/realn.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/regidx.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/region.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/sam.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/sam_internal.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/sam_mods.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/simd.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/synced_bcf_reader.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/tbx.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/textutils.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/textutils_internal.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/thread_pool.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/thread_pool_internal.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/vcf.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/vcf_sweep.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/vcfutils.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib copying htslib/version.sh -> build/lib.linux-s390x-cpython-314/pysam/include/htslib creating build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_codecs.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_codecs.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_decode.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_decode.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_encode.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_encode.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_external.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_index.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_index.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_io.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_io.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_samtools.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_stats.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_stats.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/cram_structs.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/mFILE.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/mFILE.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/misc.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/open_trace_file.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/open_trace_file.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/os.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/pooled_alloc.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/pooled_alloc.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/string_alloc.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram copying htslib/cram/string_alloc.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram creating build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/arith_dynamic.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/arith_dynamic.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/c_range_coder.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/c_simple_model.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pack.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pack.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/permute.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pooled_alloc.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_byte.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_word.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rle.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rle.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/tokenise_name3.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/tokenise_name3.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/utils.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/utils.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/varint.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/varint2.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/version.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs creating build/lib.linux-s390x-cpython-314/pysam/include/htslib/m4 copying htslib/m4/hts_check_compile_flags_needed.m4 -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/m4 copying htslib/m4/hts_hide_dynamic_syms.m4 -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/m4 copying htslib/m4/hts_prog_cc_warnings.m4 -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/m4 copying htslib/m4/pkg.m4 -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/m4 creating build/lib.linux-s390x-cpython-314/pysam/include/htslib/os copying htslib/os/lzma_stub.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/os copying htslib/os/rand.c -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/os copying htslib/config.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib creating build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/bgzf.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/cram.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/faidx.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/hfile.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/hts.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/hts_defs.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/hts_endian.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/hts_expr.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/hts_log.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/hts_os.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/kbitset.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/kfunc.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/khash.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/khash_str2int.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/klist.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/knetfile.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/kroundup.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/kseq.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/ksort.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/kstring.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/regidx.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/sam.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/tbx.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/thread_pool.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/vcf.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/vcf_sweep.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib copying htslib/htslib/vcfutils.h -> build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib running build_ext checking for gcc option to enable C99 features... creating build/temp.linux-s390x-cpython-314/pysam gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/usr/include/python3.14 -c pysam/conftest_cstd.c -o build/temp.linux-s390x-cpython-314/pysam/conftest_cstd.o gcc option to enable C99 features: none needed creating htslib/config_vars.h for 'pysam.libchtslib' extension building 'libhts.a' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kfunc.o kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kstring.o kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bgzf.o bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o errmod.o errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o faidx.o faidx.c faidx.c: In function ‘fai_path’: faidx.c:1042:25: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1042 | char *fai_tmp = strstr(fa, HTS_IDX_DELIM); | ^~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o header.o header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.21"' > version.h gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts.o hts.c hts.c: In function ‘hts_open_format’: hts.c:938:33: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 938 | char *rmme = NULL, *fnidx = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ hts.c: In function ‘hts_hopen’: hts.c:1464:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1464 | if ((cp = strchr(mode, ','))) { | ^ hts.c: In function ‘idx_find_and_load’: hts.c:4874:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 4874 | char *fnidx = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_expr.o hts_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_os.o hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o md5.o md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o multipart.o multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o probaln.o probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o realn.o realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o regidx.o regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o region.o region.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam.o sam.c sam.c: In function ‘sam_open_mode_opts’: sam.c:5295:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 5295 | if ((opts = strchr(format, ','))) { | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam_mods.o sam_mods.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o simd.o simd.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf_sweep.o vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o tbx.o tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o thread_pool.o thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf.o vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcfutils.o vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_decode.o cram/cram_decode.c cram/cram_decode.c: In function ‘cram_decode_seq’: cram/cram_decode.c:1229:35: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1229 | char *N = memchr(refp, 'N', frag_len); | ^~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_encode.o cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_external.o cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_index.o cram/cram_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_io.o cram/cram_io.c cram/cram_io.c: In function ‘refs_load_fai’: cram/cram_io.c:2530:22: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2530 | char *fn_delim = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ cram/cram_io.c: In function ‘cram_dopen’: cram/cram_io.c:5353:29: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 5353 | fd->prefix = strdup((cp = strrchr(filename, '/')) ? cp+1 : filename); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_stats.o cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/mFILE.o cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/string_alloc.o cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx2.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_avx512.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_sse4.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o ranlib libhts.a Compiling pysam/libchtslib.pyx because it changed. [1/1] Cythonizing pysam/libchtslib.pyx building 'pysam.libchtslib' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/htslib_util.c -o build/temp.linux-s390x-cpython-314/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libchtslib.c -o build/temp.linux-s390x-cpython-314/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/htslib_util.o build/temp.linux-s390x-cpython-314/pysam/libchtslib.o htslib/kfunc.o htslib/kstring.o htslib/bcf_sr_sort.o htslib/bgzf.o htslib/errmod.o htslib/faidx.o htslib/header.o htslib/hfile.o htslib/hts.o htslib/hts_expr.o htslib/hts_os.o htslib/md5.o htslib/multipart.o htslib/probaln.o htslib/realn.o htslib/regidx.o htslib/region.o htslib/sam.o htslib/sam_mods.o htslib/simd.o htslib/synced_bcf_reader.o htslib/vcf_sweep.o htslib/tbx.o htslib/textutils.o htslib/thread_pool.o htslib/vcf.o htslib/vcfutils.o htslib/cram/cram_codecs.o htslib/cram/cram_decode.o htslib/cram/cram_encode.o htslib/cram/cram_external.o htslib/cram/cram_index.o htslib/cram/cram_io.o htslib/cram/cram_stats.o htslib/cram/mFILE.o htslib/cram/open_trace_file.o htslib/cram/pooled_alloc.o htslib/cram/string_alloc.o htslib/htscodecs/htscodecs/arith_dynamic.o htslib/htscodecs/htscodecs/fqzcomp_qual.o htslib/htscodecs/htscodecs/htscodecs.o htslib/htscodecs/htscodecs/pack.o htslib/htscodecs/htscodecs/rANS_static4x16pr.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.o htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.o htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.o htslib/htscodecs/htscodecs/rANS_static32x16pr.o htslib/htscodecs/htscodecs/rANS_static.o htslib/htscodecs/htscodecs/rle.o htslib/htscodecs/htscodecs/tokenise_name3.o htslib/htscodecs/htscodecs/utils.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -o build/lib.linux-s390x-cpython-314/pysam/libchtslib.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension Compiling pysam/libcsamtools.pyx because it changed. [1/1] Cythonizing pysam/libcsamtools.pyx building 'pysam.libcsamtools' extension creating build/temp.linux-s390x-cpython-314/samtools creating build/temp.linux-s390x-cpython-314/samtools/lz4 gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libcsamtools.c -o build/temp.linux-s390x-cpython-314/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_color.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_import.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_index.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_md.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_split.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement samtools/bam_split.c.pysam.c: In function ‘prep_sam_file’: samtools/bam_split.c.pysam.c:378:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 378 | char *dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ samtools/bam_split.c.pysam.c: In function ‘init’: samtools/bam_split.c.pysam.c:595:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 595 | char* dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bamtk.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bedcov.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/bedidx.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/coverage.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/cram_size.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/cut_target.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/dict.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/faidx.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/lz4/lz4.c -o build/temp.linux-s390x-cpython-314/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/padding.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/phase.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/reference.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/reset.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement samtools/sam_utils.c.pysam.c: In function ‘auto_index’: samtools/sam_utils.c.pysam.c:124:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 124 | char *delim = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/sam_view.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/sample.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/samtools.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/stats.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-s390x-cpython-314/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/libcsamtools.o build/temp.linux-s390x-cpython-314/samtools/amplicon_stats.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam2depth.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_addrprg.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_aux.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_cat.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_color.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_consensus.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_fastq.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_flags.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_import.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_index.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_lpileup.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_markdup.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_mate.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_md.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_plbuf.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_plcmd.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_quickcheck.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_reheader.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_rmdup.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_rmdupse.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_samples.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_sort.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_split.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bam_stat.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bamshuf.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bamtk.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bedcov.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/bedidx.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/consensus_pileup.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/coverage.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/cram_size.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/cut_target.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/dict.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/faidx.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/lz4/lz4.o build/temp.linux-s390x-cpython-314/samtools/padding.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/phase.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/reference.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/reset.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/sam_opts.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/sam_utils.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/sam_view.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/sample.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/samtools.pysam.o build/temp.linux-s390x-cpython-314/samtools/stats.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/stats_isize.c.pysam.o build/temp.linux-s390x-cpython-314/samtools/tmp_file.c.pysam.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libcsamtools.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcftools.pyx because it changed. [1/1] Cythonizing pysam/libcbcftools.pyx building 'pysam.libcbcftools' extension creating build/temp.linux-s390x-cpython-314/bcftools gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/HMM.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/abuf.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement bcftools/bam_sample.c.pysam.c: In function ‘bam_smpl_add_bam’: bcftools/bam_sample.c.pysam.c:174:21: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 174 | char *eol = strchr(q + 3, '\n'); | ^~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/bcftools.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/bin.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/ccall.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/cols.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/consensus.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/convert.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/csq.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/dist.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/edlib.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/em.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/extsort.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/filter.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/gff.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/hclust.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/kmin.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/main.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/mcall.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/prob1.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/regidx.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/reheader.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/tabix.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c bcftools/version.c.pysam.c -o build/temp.linux-s390x-cpython-314/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement bcftools/version.c.pysam.c: In function ‘init_index2’: bcftools/version.c.pysam.c:156:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 156 | char *delim = strstr(fname, HTS_IDX_DELIM); | ^~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libcbcftools.c -o build/temp.linux-s390x-cpython-314/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/bcftools/HMM.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/abuf.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/bam2bcf.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/bam_sample.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/bcftools.pysam.o build/temp.linux-s390x-cpython-314/bcftools/bin.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/ccall.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/cols.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/consensus.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/convert.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/csq.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/dist.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/edlib.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/em.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/extsort.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/filter.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/gff.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/gvcf.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/hclust.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/kmin.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/main.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/mcall.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/mpileup.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/ploidy.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/prob1.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/read_consensus.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/regidx.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/reheader.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/smpl_ilist.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/str_finder.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/tabix.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/tsv2vcf.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfannotate.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfbuf.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfcall.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfcnv.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfconcat.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfconvert.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcffilter.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfhead.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfindex.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfisec.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfmerge.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfnorm.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfplugin.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfquery.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfroh.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfsom.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfsort.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfstats.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcfview.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/vcmp.c.pysam.o build/temp.linux-s390x-cpython-314/bcftools/version.c.pysam.o build/temp.linux-s390x-cpython-314/pysam/libcbcftools.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libcbcftools.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcutils.pyx because it changed. [1/1] Cythonizing pysam/libcutils.pyx building 'pysam.libcutils' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libcutils.c -o build/temp.linux-s390x-cpython-314/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/pysam_util.c -o build/temp.linux-s390x-cpython-314/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/libcutils.o build/temp.linux-s390x-cpython-314/pysam/pysam_util.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -lcsamtools.cpython-314-s390x-linux-gnu -lcbcftools.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libcutils.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcalignmentfile.pyx:2564:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2569:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2574:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2613:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2618:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2623:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation Compiling pysam/libcalignmentfile.pyx because it changed. [1/1] Cythonizing pysam/libcalignmentfile.pyx building 'pysam.libcalignmentfile' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libcalignmentfile.c -o build/temp.linux-s390x-cpython-314/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/libcalignmentfile.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -lcutils.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libcalignmentfile.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcsamfile.pyx because it changed. [1/1] Cythonizing pysam/libcsamfile.pyx building 'pysam.libcsamfile' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libcsamfile.c -o build/temp.linux-s390x-cpython-314/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/libcsamfile.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -lcutils.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libcsamfile.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcalignedsegment.pyx because it changed. [1/1] Cythonizing pysam/libcalignedsegment.pyx building 'pysam.libcalignedsegment' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libcalignedsegment.c -o build/temp.linux-s390x-cpython-314/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/libcalignedsegment.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -lcutils.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libcalignedsegment.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabix.pyx because it changed. [1/1] Cythonizing pysam/libctabix.pyx building 'pysam.libctabix' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libctabix.c -o build/temp.linux-s390x-cpython-314/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/libctabix.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -lcutils.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libctabix.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcfaidx.pyx because it changed. [1/1] Cythonizing pysam/libcfaidx.pyx building 'pysam.libcfaidx' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libcfaidx.c -o build/temp.linux-s390x-cpython-314/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/libcfaidx.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -lcutils.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libcfaidx.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcf.pyx because it changed. [1/1] Cythonizing pysam/libcbcf.pyx building 'pysam.libcbcf' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libcbcf.c -o build/temp.linux-s390x-cpython-314/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/libcbcf.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -lcutils.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libcbcf.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbgzf.pyx because it changed. [1/1] Cythonizing pysam/libcbgzf.pyx building 'pysam.libcbgzf' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libcbgzf.c -o build/temp.linux-s390x-cpython-314/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/libcbgzf.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -lcutils.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libcbgzf.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabixproxies.pyx because it changed. [1/1] Cythonizing pysam/libctabixproxies.pyx building 'pysam.libctabixproxies' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libctabixproxies.c -o build/temp.linux-s390x-cpython-314/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/libctabixproxies.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -lcutils.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libctabixproxies.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcvcf.pyx:1083:27: Unreachable code Compiling pysam/libcvcf.pyx because it changed. [1/1] Cythonizing pysam/libcvcf.pyx building 'pysam.libcvcf' extension gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools -I/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -I/usr/include/python3.14 -c pysam/libcvcf.c -o build/temp.linux-s390x-cpython-314/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.isra.0’: pysam/libcvcf.c:25015:15: warning: ‘__pyx_v_qual’ may be used uninitialized [-Wmaybe-uninitialized] 25015 | __pyx_t_2 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 873, __pyx_L1_error) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcvcf.c:20695:10: note: ‘__pyx_v_qual’ was declared here 20695 | double __pyx_v_qual; | ^~~~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-s390x-cpython-314/pysam/libcvcf.o -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/pysam -L/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -Lbuild/lib.linux-s390x-cpython-314/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-314-s390x-linux-gnu -lcutils.cpython-314-s390x-linux-gnu -o build/lib.linux-s390x-cpython-314/pysam/libcvcf.cpython-314-s390x-linux-gnu.so -Wl,-rpath,$ORIGIN installing to build/bdist.linux-s390x/wheel running install running install_lib creating build/bdist.linux-s390x/wheel creating build/bdist.linux-s390x/wheel/pysam copying build/lib.linux-s390x-cpython-314/pysam/libcvcf.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libctabixproxies.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbgzf.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbcf.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcfaidx.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libctabix.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcalignedsegment.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcsamfile.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcalignmentfile.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcutils.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbcftools.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcsamtools.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libchtslib.cpython-314-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/version.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/version.h -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/pysam_util.h -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/pysam_util.c -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/pysam_stream.h -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/py.typed -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcvcf.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcvcf.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcvcf.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcutils.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcutils.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcutils.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libctabixproxies.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libctabixproxies.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libctabixproxies.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libctabix.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libctabix.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libctabix.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcsamtools.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcsamtools.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcsamtools.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcsamfile.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcsamfile.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcsamfile.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libchtslib.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libchtslib.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libchtslib.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcfaidx.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcfaidx.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcfaidx.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbgzf.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbgzf.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbgzf.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbcftools.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbcftools.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbcftools.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbcf.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbcf.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcbcf.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcalignmentfile.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcalignmentfile.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcalignmentfile.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcalignedsegment.pyx -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcalignedsegment.pyi -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/libcalignedsegment.pxd -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/htslib_util.h -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/htslib_util.c -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/csamtools_util.h -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/conftest_cstd.c -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/cbcftools_util.h -> build/bdist.linux-s390x/wheel/./pysam creating build/bdist.linux-s390x/wheel/pysam/include creating build/bdist.linux-s390x/wheel/pysam/include/htslib creating build/bdist.linux-s390x/wheel/pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/vcfutils.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/vcf_sweep.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/vcf.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/thread_pool.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/tbx.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/synced_bcf_reader.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/sam.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/regidx.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/kstring.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/ksort.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/kseq.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/kroundup.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/knetfile.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/klist.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/khash_str2int.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/khash.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/kfunc.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/kbitset.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/hts_os.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/hts_log.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/hts_expr.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/hts_endian.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/hts_defs.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/hts.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/hfile.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/faidx.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/cram.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib/bgzf.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/config.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib creating build/bdist.linux-s390x/wheel/pysam/include/htslib/os copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/os/rand.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/os copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/os/lzma_stub.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/os creating build/bdist.linux-s390x/wheel/pysam/include/htslib/m4 copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/m4/pkg.m4 -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/m4 copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/m4/hts_prog_cc_warnings.m4 -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/m4 copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/m4/hts_hide_dynamic_syms.m4 -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/m4 copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/m4/hts_check_compile_flags_needed.m4 -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/m4 creating build/bdist.linux-s390x/wheel/pysam/include/htslib/htscodecs creating build/bdist.linux-s390x/wheel/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/version.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/varint2.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/varint.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/utils.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/utils.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rle.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rle.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_word.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_static.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_static.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/permute.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/pack.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/pack.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/htscodecs.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/htscodecs.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/htscodecs/htscodecs creating build/bdist.linux-s390x/wheel/pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/string_alloc.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/string_alloc.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/pooled_alloc.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/pooled_alloc.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/os.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/open_trace_file.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/open_trace_file.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/misc.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/mFILE.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/mFILE.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_structs.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_stats.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_stats.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_samtools.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_io.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_io.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_index.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_index.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_external.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_encode.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_encode.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_decode.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_decode.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_codecs.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram_codecs.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/cram/cram.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib/cram copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/version.sh -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/vcfutils.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/vcf_sweep.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/vcf.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/thread_pool_internal.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/thread_pool.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/textutils_internal.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/textutils.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/tbx.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/synced_bcf_reader.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/simd.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/sam_mods.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/sam_internal.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/sam.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/region.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/regidx.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/realn.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/probaln.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/plugin.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/multipart.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/md5.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/kstring.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/kfunc.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib_vars.mk -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib.pc.in -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htslib.mk -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs_external.mk -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/htscodecs_bundled.mk -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/hts_time_funcs.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/hts_os.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/hts_internal.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/hts_expr.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/hts.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/hfile_s3_write.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/hfile_s3.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/hfile_libcurl.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/hfile_internal.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/hfile_gcs.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/hfile.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/header.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/header.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/fuzz_settings.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/faidx.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/errmod.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/configure.ac -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/configure -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/config.sub -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/config.mk.in -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/config.h.in -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/config.guess -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/builddir_vars.mk.in -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/bgzf.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/bcf_sr_sort.h -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/bcf_sr_sort.c -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/README -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/Makefile -> build/bdist.linux-s390x/wheel/./pysam/include/htslib copying build/lib.linux-s390x-cpython-314/pysam/include/htslib/LICENSE -> build/bdist.linux-s390x/wheel/./pysam/include/htslib creating build/bdist.linux-s390x/wheel/pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/config.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/version.sh -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/version.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/version.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcmp.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcmp.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcmp.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfview.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfview.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfstats.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfstats.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfsort.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfsort.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfsom.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfsom.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfroh.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfroh.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfquery.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfquery.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfplugin.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfplugin.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfnorm.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfnorm.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfmerge.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfmerge.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfisec.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfisec.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfindex.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfindex.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfhead.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfhead.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfgtcheck.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcffilter.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcffilter.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfconvert.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfconvert.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfconcat.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfconcat.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfcnv.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfcnv.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfcall.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfcall.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfbuf.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfbuf.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfbuf.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfannotate.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/vcfannotate.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/variantkey.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/utlist.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/tsv2vcf.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/tsv2vcf.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/tsv2vcf.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/tabix.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/tabix.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/str_finder.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/str_finder.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/str_finder.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/smpl_ilist.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/smpl_ilist.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/smpl_ilist.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/reheader.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/reheader.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/regidx.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/regidx.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/regidx.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/read_consensus.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/read_consensus.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/read_consensus.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/rbuf.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/prob1.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/prob1.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/prob1.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/ploidy.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/ploidy.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/ploidy.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/mw.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/mpileup.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/mpileup.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/mcall.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/mcall.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/main.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/main.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/kmin.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/kmin.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/kmin.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/kheap.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/khash_str2str.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/hex.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/hclust.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/hclust.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/hclust.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/gvcf.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/gvcf.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/gvcf.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/gff.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/gff.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/gff.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/filter.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/filter.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/filter.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/extsort.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/extsort.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/extsort.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/em.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/em.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/edlib.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/edlib.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/edlib.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/dist.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/dist.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/dist.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/dbuf.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/csq.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/csq.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/convert.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/convert.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/convert.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/consensus.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/consensus.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/cols.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/cols.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/cols.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/cigar_state.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/ccall.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/ccall.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/call.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bin.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bin.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bin.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bcftools.pysam.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bcftools.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bcftools.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam_sample.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam_sample.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam_sample.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam2bcf_indel.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam2bcf_iaux.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam2bcf_edlib.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam2bcf.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam2bcf.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/bam2bcf.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/abuf.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/abuf.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/abuf.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/README -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/LICENSE -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/HMM.h -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/HMM.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools copying build/lib.linux-s390x-cpython-314/pysam/include/bcftools/HMM.c -> build/bdist.linux-s390x/wheel/./pysam/include/bcftools creating build/bdist.linux-s390x/wheel/pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/config.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools creating build/bdist.linux-s390x/wheel/pysam/include/samtools/lz4 copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/lz4/lz4.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools/lz4 copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/lz4/lz4.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools/lz4 copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/lz4/lz4.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools/lz4 copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/lz4/LICENSE -> build/bdist.linux-s390x/wheel/./pysam/include/samtools/lz4 copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/version.sh -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/tmp_file.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/tmp_file.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/tmp_file.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/stats_isize.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/stats_isize.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/stats_isize.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/stats.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/stats.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/splaysort.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/samtools.pysam.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/samtools.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/samtools.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/sample.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/sample.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/sample.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/sam_view.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/sam_view.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/sam_utils.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/sam_utils.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/sam_utils.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/sam_opts.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/sam_opts.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/sam_opts.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/reset.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/reset.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/reference.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/reference.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/phase.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/phase.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/padding.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/padding.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/faidx.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/faidx.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/dict.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/dict.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/cut_target.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/cut_target.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/cram_size.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/cram_size.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/coverage.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/coverage.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/consensus_pileup.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/consensus_pileup.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/consensus_pileup.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bedidx.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bedidx.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bedidx.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bedcov.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bedcov.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bamtk.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bamtk.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bamshuf.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bamshuf.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_stat.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_stat.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_split.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_split.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_sort.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_sort.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_samples.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_samples.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_rmdupse.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_rmdupse.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_rmdup.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_rmdup.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_reheader.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_reheader.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_quickcheck.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_quickcheck.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_plcmd.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_plcmd.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_plbuf.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_plbuf.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_plbuf.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_md.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_md.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_mate.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_mate.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_markdup.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_markdup.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_lpileup.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_lpileup.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_lpileup.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_index.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_index.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_import.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_import.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_flags.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_flags.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_fastq.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_fastq.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_consensus.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_consensus.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_color.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_color.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_cat.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_cat.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_aux.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_aux.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_ampliconclip.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_ampliconclip.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_addrprg.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam_addrprg.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam2depth.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam2depth.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam.h -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/bam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/amplicon_stats.c.pysam.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/amplicon_stats.c -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/README -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/samtools/LICENSE -> build/bdist.linux-s390x/wheel/./pysam/include/samtools copying build/lib.linux-s390x-cpython-314/pysam/include/__init__.py -> build/bdist.linux-s390x/wheel/./pysam/include copying build/lib.linux-s390x-cpython-314/pysam/Pileup.py -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/__init__.py -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/bcftools.py -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/samtools.py -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/utils.py -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/version.py -> build/bdist.linux-s390x/wheel/./pysam copying build/lib.linux-s390x-cpython-314/pysam/config.py -> build/bdist.linux-s390x/wheel/./pysam running install_egg_info Copying pysam.egg-info to build/bdist.linux-s390x/wheel/./pysam-0.23.3-py3.14.egg-info running install_scripts creating build/bdist.linux-s390x/wheel/pysam-0.23.3.dist-info/WHEEL creating '/builddir/.cache/pip/wheels/50/eb/be/1465d8f0fddae09adb6471028b3bc51bfbf949bdc17e2cb452/tmpbqg6_mrd/.tmp-jtmylmf7/pysam-0.23.3-cp314-cp314-linux_s390x.whl' and adding 'build/bdist.linux-s390x/wheel' to it adding 'pysam/Pileup.py' adding 'pysam/__init__.py' adding 'pysam/bcftools.py' adding 'pysam/cbcftools_util.h' adding 'pysam/config.py' adding 'pysam/conftest_cstd.c' adding 'pysam/csamtools_util.h' adding 'pysam/htslib_util.c' adding 'pysam/htslib_util.h' adding 'pysam/libcalignedsegment.cpython-314-s390x-linux-gnu.so' adding 'pysam/libcalignedsegment.pxd' adding 'pysam/libcalignedsegment.pyi' adding 'pysam/libcalignedsegment.pyx' adding 'pysam/libcalignmentfile.cpython-314-s390x-linux-gnu.so' adding 'pysam/libcalignmentfile.pxd' adding 'pysam/libcalignmentfile.pyi' adding 'pysam/libcalignmentfile.pyx' adding 'pysam/libcbcf.cpython-314-s390x-linux-gnu.so' adding 'pysam/libcbcf.pxd' adding 'pysam/libcbcf.pyi' adding 'pysam/libcbcf.pyx' adding 'pysam/libcbcftools.cpython-314-s390x-linux-gnu.so' adding 'pysam/libcbcftools.pxd' adding 'pysam/libcbcftools.pyi' adding 'pysam/libcbcftools.pyx' adding 'pysam/libcbgzf.cpython-314-s390x-linux-gnu.so' adding 'pysam/libcbgzf.pxd' adding 'pysam/libcbgzf.pyi' adding 'pysam/libcbgzf.pyx' adding 'pysam/libcfaidx.cpython-314-s390x-linux-gnu.so' adding 'pysam/libcfaidx.pxd' adding 'pysam/libcfaidx.pyi' adding 'pysam/libcfaidx.pyx' adding 'pysam/libchtslib.cpython-314-s390x-linux-gnu.so' adding 'pysam/libchtslib.pxd' adding 'pysam/libchtslib.pyi' adding 'pysam/libchtslib.pyx' adding 'pysam/libcsamfile.cpython-314-s390x-linux-gnu.so' adding 'pysam/libcsamfile.pxd' adding 'pysam/libcsamfile.pyi' adding 'pysam/libcsamfile.pyx' adding 'pysam/libcsamtools.cpython-314-s390x-linux-gnu.so' adding 'pysam/libcsamtools.pxd' adding 'pysam/libcsamtools.pyi' adding 'pysam/libcsamtools.pyx' adding 'pysam/libctabix.cpython-314-s390x-linux-gnu.so' adding 'pysam/libctabix.pxd' adding 'pysam/libctabix.pyi' adding 'pysam/libctabix.pyx' adding 'pysam/libctabixproxies.cpython-314-s390x-linux-gnu.so' adding 'pysam/libctabixproxies.pxd' adding 'pysam/libctabixproxies.pyi' adding 'pysam/libctabixproxies.pyx' adding 'pysam/libcutils.cpython-314-s390x-linux-gnu.so' adding 'pysam/libcutils.pxd' adding 'pysam/libcutils.pyi' adding 'pysam/libcutils.pyx' adding 'pysam/libcvcf.cpython-314-s390x-linux-gnu.so' adding 'pysam/libcvcf.pxd' adding 'pysam/libcvcf.pyi' adding 'pysam/libcvcf.pyx' adding 'pysam/py.typed' adding 'pysam/pysam_stream.h' adding 'pysam/pysam_util.c' adding 'pysam/pysam_util.h' adding 'pysam/samtools.py' adding 'pysam/utils.py' adding 'pysam/version.h' adding 'pysam/version.py' adding 'pysam/version.pyi' adding 'pysam/include/__init__.py' adding 'pysam/include/bcftools/HMM.c' adding 'pysam/include/bcftools/HMM.c.pysam.c' adding 'pysam/include/bcftools/HMM.h' adding 'pysam/include/bcftools/LICENSE' adding 'pysam/include/bcftools/README' adding 'pysam/include/bcftools/abuf.c' adding 'pysam/include/bcftools/abuf.c.pysam.c' adding 'pysam/include/bcftools/abuf.h' adding 'pysam/include/bcftools/bam2bcf.c' adding 'pysam/include/bcftools/bam2bcf.c.pysam.c' adding 'pysam/include/bcftools/bam2bcf.h' adding 'pysam/include/bcftools/bam2bcf_edlib.c' adding 'pysam/include/bcftools/bam2bcf_edlib.c.pysam.c' adding 'pysam/include/bcftools/bam2bcf_iaux.c' adding 'pysam/include/bcftools/bam2bcf_iaux.c.pysam.c' adding 'pysam/include/bcftools/bam2bcf_indel.c' adding 'pysam/include/bcftools/bam2bcf_indel.c.pysam.c' adding 'pysam/include/bcftools/bam_sample.c' adding 'pysam/include/bcftools/bam_sample.c.pysam.c' adding 'pysam/include/bcftools/bam_sample.h' adding 'pysam/include/bcftools/bcftools.h' adding 'pysam/include/bcftools/bcftools.pysam.c' adding 'pysam/include/bcftools/bcftools.pysam.h' adding 'pysam/include/bcftools/bin.c' adding 'pysam/include/bcftools/bin.c.pysam.c' adding 'pysam/include/bcftools/bin.h' adding 'pysam/include/bcftools/call.h' adding 'pysam/include/bcftools/ccall.c' adding 'pysam/include/bcftools/ccall.c.pysam.c' adding 'pysam/include/bcftools/cigar_state.h' adding 'pysam/include/bcftools/cols.c' adding 'pysam/include/bcftools/cols.c.pysam.c' adding 'pysam/include/bcftools/cols.h' adding 'pysam/include/bcftools/config.h' adding 'pysam/include/bcftools/consensus.c' adding 'pysam/include/bcftools/consensus.c.pysam.c' adding 'pysam/include/bcftools/convert.c' adding 'pysam/include/bcftools/convert.c.pysam.c' adding 'pysam/include/bcftools/convert.h' adding 'pysam/include/bcftools/csq.c' adding 'pysam/include/bcftools/csq.c.pysam.c' adding 'pysam/include/bcftools/dbuf.h' adding 'pysam/include/bcftools/dist.c' adding 'pysam/include/bcftools/dist.c.pysam.c' adding 'pysam/include/bcftools/dist.h' adding 'pysam/include/bcftools/edlib.c' adding 'pysam/include/bcftools/edlib.c.pysam.c' adding 'pysam/include/bcftools/edlib.h' adding 'pysam/include/bcftools/em.c' adding 'pysam/include/bcftools/em.c.pysam.c' adding 'pysam/include/bcftools/extsort.c' adding 'pysam/include/bcftools/extsort.c.pysam.c' adding 'pysam/include/bcftools/extsort.h' adding 'pysam/include/bcftools/filter.c' adding 'pysam/include/bcftools/filter.c.pysam.c' adding 'pysam/include/bcftools/filter.h' adding 'pysam/include/bcftools/gff.c' adding 'pysam/include/bcftools/gff.c.pysam.c' adding 'pysam/include/bcftools/gff.h' adding 'pysam/include/bcftools/gvcf.c' adding 'pysam/include/bcftools/gvcf.c.pysam.c' adding 'pysam/include/bcftools/gvcf.h' adding 'pysam/include/bcftools/hclust.c' adding 'pysam/include/bcftools/hclust.c.pysam.c' adding 'pysam/include/bcftools/hclust.h' adding 'pysam/include/bcftools/hex.h' adding 'pysam/include/bcftools/khash_str2str.h' adding 'pysam/include/bcftools/kheap.h' adding 'pysam/include/bcftools/kmin.c' adding 'pysam/include/bcftools/kmin.c.pysam.c' adding 'pysam/include/bcftools/kmin.h' adding 'pysam/include/bcftools/main.c' adding 'pysam/include/bcftools/main.c.pysam.c' adding 'pysam/include/bcftools/mcall.c' adding 'pysam/include/bcftools/mcall.c.pysam.c' adding 'pysam/include/bcftools/mpileup.c' adding 'pysam/include/bcftools/mpileup.c.pysam.c' adding 'pysam/include/bcftools/mw.h' adding 'pysam/include/bcftools/ploidy.c' adding 'pysam/include/bcftools/ploidy.c.pysam.c' adding 'pysam/include/bcftools/ploidy.h' adding 'pysam/include/bcftools/prob1.c' adding 'pysam/include/bcftools/prob1.c.pysam.c' adding 'pysam/include/bcftools/prob1.h' adding 'pysam/include/bcftools/rbuf.h' adding 'pysam/include/bcftools/read_consensus.c' adding 'pysam/include/bcftools/read_consensus.c.pysam.c' adding 'pysam/include/bcftools/read_consensus.h' adding 'pysam/include/bcftools/regidx.c' adding 'pysam/include/bcftools/regidx.c.pysam.c' adding 'pysam/include/bcftools/regidx.h' adding 'pysam/include/bcftools/reheader.c' adding 'pysam/include/bcftools/reheader.c.pysam.c' adding 'pysam/include/bcftools/smpl_ilist.c' adding 'pysam/include/bcftools/smpl_ilist.c.pysam.c' adding 'pysam/include/bcftools/smpl_ilist.h' adding 'pysam/include/bcftools/str_finder.c' adding 'pysam/include/bcftools/str_finder.c.pysam.c' adding 'pysam/include/bcftools/str_finder.h' adding 'pysam/include/bcftools/tabix.c' adding 'pysam/include/bcftools/tabix.c.pysam.c' adding 'pysam/include/bcftools/tsv2vcf.c' adding 'pysam/include/bcftools/tsv2vcf.c.pysam.c' adding 'pysam/include/bcftools/tsv2vcf.h' adding 'pysam/include/bcftools/utlist.h' adding 'pysam/include/bcftools/variantkey.h' adding 'pysam/include/bcftools/vcfannotate.c' adding 'pysam/include/bcftools/vcfannotate.c.pysam.c' adding 'pysam/include/bcftools/vcfbuf.c' adding 'pysam/include/bcftools/vcfbuf.c.pysam.c' adding 'pysam/include/bcftools/vcfbuf.h' adding 'pysam/include/bcftools/vcfcall.c' adding 'pysam/include/bcftools/vcfcall.c.pysam.c' adding 'pysam/include/bcftools/vcfcnv.c' adding 'pysam/include/bcftools/vcfcnv.c.pysam.c' adding 'pysam/include/bcftools/vcfconcat.c' adding 'pysam/include/bcftools/vcfconcat.c.pysam.c' adding 'pysam/include/bcftools/vcfconvert.c' adding 'pysam/include/bcftools/vcfconvert.c.pysam.c' adding 'pysam/include/bcftools/vcffilter.c' adding 'pysam/include/bcftools/vcffilter.c.pysam.c' adding 'pysam/include/bcftools/vcfgtcheck.c' adding 'pysam/include/bcftools/vcfgtcheck.c.pysam.c' adding 'pysam/include/bcftools/vcfhead.c' adding 'pysam/include/bcftools/vcfhead.c.pysam.c' adding 'pysam/include/bcftools/vcfindex.c' adding 'pysam/include/bcftools/vcfindex.c.pysam.c' adding 'pysam/include/bcftools/vcfisec.c' adding 'pysam/include/bcftools/vcfisec.c.pysam.c' adding 'pysam/include/bcftools/vcfmerge.c' adding 'pysam/include/bcftools/vcfmerge.c.pysam.c' adding 'pysam/include/bcftools/vcfnorm.c' adding 'pysam/include/bcftools/vcfnorm.c.pysam.c' adding 'pysam/include/bcftools/vcfplugin.c' adding 'pysam/include/bcftools/vcfplugin.c.pysam.c' adding 'pysam/include/bcftools/vcfquery.c' adding 'pysam/include/bcftools/vcfquery.c.pysam.c' adding 'pysam/include/bcftools/vcfroh.c' adding 'pysam/include/bcftools/vcfroh.c.pysam.c' adding 'pysam/include/bcftools/vcfsom.c' adding 'pysam/include/bcftools/vcfsom.c.pysam.c' adding 'pysam/include/bcftools/vcfsort.c' adding 'pysam/include/bcftools/vcfsort.c.pysam.c' adding 'pysam/include/bcftools/vcfstats.c' adding 'pysam/include/bcftools/vcfstats.c.pysam.c' adding 'pysam/include/bcftools/vcfview.c' adding 'pysam/include/bcftools/vcfview.c.pysam.c' adding 'pysam/include/bcftools/vcmp.c' adding 'pysam/include/bcftools/vcmp.c.pysam.c' adding 'pysam/include/bcftools/vcmp.h' adding 'pysam/include/bcftools/version.c' adding 'pysam/include/bcftools/version.c.pysam.c' adding 'pysam/include/bcftools/version.sh' adding 'pysam/include/htslib/LICENSE' adding 'pysam/include/htslib/Makefile' adding 'pysam/include/htslib/README' adding 'pysam/include/htslib/bcf_sr_sort.c' adding 'pysam/include/htslib/bcf_sr_sort.h' adding 'pysam/include/htslib/bgzf.c' adding 'pysam/include/htslib/builddir_vars.mk.in' adding 'pysam/include/htslib/config.guess' adding 'pysam/include/htslib/config.h' adding 'pysam/include/htslib/config.h.in' adding 'pysam/include/htslib/config.mk.in' adding 'pysam/include/htslib/config.sub' adding 'pysam/include/htslib/configure' adding 'pysam/include/htslib/configure.ac' adding 'pysam/include/htslib/errmod.c' adding 'pysam/include/htslib/faidx.c' adding 'pysam/include/htslib/fuzz_settings.h' adding 'pysam/include/htslib/header.c' adding 'pysam/include/htslib/header.h' adding 'pysam/include/htslib/hfile.c' adding 'pysam/include/htslib/hfile_gcs.c' adding 'pysam/include/htslib/hfile_internal.h' adding 'pysam/include/htslib/hfile_libcurl.c' adding 'pysam/include/htslib/hfile_s3.c' adding 'pysam/include/htslib/hfile_s3_write.c' adding 'pysam/include/htslib/hts.c' adding 'pysam/include/htslib/hts_expr.c' adding 'pysam/include/htslib/hts_internal.h' adding 'pysam/include/htslib/hts_os.c' adding 'pysam/include/htslib/hts_time_funcs.h' adding 'pysam/include/htslib/htscodecs_bundled.mk' adding 'pysam/include/htslib/htscodecs_external.mk' adding 'pysam/include/htslib/htslib.mk' adding 'pysam/include/htslib/htslib.pc.in' adding 'pysam/include/htslib/htslib_vars.mk' adding 'pysam/include/htslib/kfunc.c' adding 'pysam/include/htslib/kstring.c' adding 'pysam/include/htslib/md5.c' adding 'pysam/include/htslib/multipart.c' adding 'pysam/include/htslib/plugin.c' adding 'pysam/include/htslib/probaln.c' adding 'pysam/include/htslib/realn.c' adding 'pysam/include/htslib/regidx.c' adding 'pysam/include/htslib/region.c' adding 'pysam/include/htslib/sam.c' adding 'pysam/include/htslib/sam_internal.h' adding 'pysam/include/htslib/sam_mods.c' adding 'pysam/include/htslib/simd.c' adding 'pysam/include/htslib/synced_bcf_reader.c' adding 'pysam/include/htslib/tbx.c' adding 'pysam/include/htslib/textutils.c' adding 'pysam/include/htslib/textutils_internal.h' adding 'pysam/include/htslib/thread_pool.c' adding 'pysam/include/htslib/thread_pool_internal.h' adding 'pysam/include/htslib/vcf.c' adding 'pysam/include/htslib/vcf_sweep.c' adding 'pysam/include/htslib/vcfutils.c' adding 'pysam/include/htslib/version.sh' adding 'pysam/include/htslib/cram/cram.h' adding 'pysam/include/htslib/cram/cram_codecs.c' adding 'pysam/include/htslib/cram/cram_codecs.h' adding 'pysam/include/htslib/cram/cram_decode.c' adding 'pysam/include/htslib/cram/cram_decode.h' adding 'pysam/include/htslib/cram/cram_encode.c' adding 'pysam/include/htslib/cram/cram_encode.h' adding 'pysam/include/htslib/cram/cram_external.c' adding 'pysam/include/htslib/cram/cram_index.c' adding 'pysam/include/htslib/cram/cram_index.h' adding 'pysam/include/htslib/cram/cram_io.c' adding 'pysam/include/htslib/cram/cram_io.h' adding 'pysam/include/htslib/cram/cram_samtools.h' adding 'pysam/include/htslib/cram/cram_stats.c' adding 'pysam/include/htslib/cram/cram_stats.h' adding 'pysam/include/htslib/cram/cram_structs.h' adding 'pysam/include/htslib/cram/mFILE.c' adding 'pysam/include/htslib/cram/mFILE.h' adding 'pysam/include/htslib/cram/misc.h' adding 'pysam/include/htslib/cram/open_trace_file.c' adding 'pysam/include/htslib/cram/open_trace_file.h' adding 'pysam/include/htslib/cram/os.h' adding 'pysam/include/htslib/cram/pooled_alloc.c' adding 'pysam/include/htslib/cram/pooled_alloc.h' adding 'pysam/include/htslib/cram/string_alloc.c' adding 'pysam/include/htslib/cram/string_alloc.h' adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c' adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h' adding 'pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h' adding 'pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h' adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c' adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h' adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.c' adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.h' adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h' adding 'pysam/include/htslib/htscodecs/htscodecs/pack.c' adding 'pysam/include/htslib/htscodecs/htscodecs/pack.h' adding 'pysam/include/htslib/htscodecs/htscodecs/permute.h' adding 'pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_word.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rle.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rle.h' adding 'pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c' adding 'pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h' adding 'pysam/include/htslib/htscodecs/htscodecs/utils.c' adding 'pysam/include/htslib/htscodecs/htscodecs/utils.h' adding 'pysam/include/htslib/htscodecs/htscodecs/varint.h' adding 'pysam/include/htslib/htscodecs/htscodecs/varint2.h' adding 'pysam/include/htslib/htscodecs/htscodecs/version.h' adding 'pysam/include/htslib/htslib/bgzf.h' adding 'pysam/include/htslib/htslib/cram.h' adding 'pysam/include/htslib/htslib/faidx.h' adding 'pysam/include/htslib/htslib/hfile.h' adding 'pysam/include/htslib/htslib/hts.h' adding 'pysam/include/htslib/htslib/hts_defs.h' adding 'pysam/include/htslib/htslib/hts_endian.h' adding 'pysam/include/htslib/htslib/hts_expr.h' adding 'pysam/include/htslib/htslib/hts_log.h' adding 'pysam/include/htslib/htslib/hts_os.h' adding 'pysam/include/htslib/htslib/kbitset.h' adding 'pysam/include/htslib/htslib/kfunc.h' adding 'pysam/include/htslib/htslib/khash.h' adding 'pysam/include/htslib/htslib/khash_str2int.h' adding 'pysam/include/htslib/htslib/klist.h' adding 'pysam/include/htslib/htslib/knetfile.h' adding 'pysam/include/htslib/htslib/kroundup.h' adding 'pysam/include/htslib/htslib/kseq.h' adding 'pysam/include/htslib/htslib/ksort.h' adding 'pysam/include/htslib/htslib/kstring.h' adding 'pysam/include/htslib/htslib/regidx.h' adding 'pysam/include/htslib/htslib/sam.h' adding 'pysam/include/htslib/htslib/synced_bcf_reader.h' adding 'pysam/include/htslib/htslib/tbx.h' adding 'pysam/include/htslib/htslib/thread_pool.h' adding 'pysam/include/htslib/htslib/vcf.h' adding 'pysam/include/htslib/htslib/vcf_sweep.h' adding 'pysam/include/htslib/htslib/vcfutils.h' adding 'pysam/include/htslib/m4/hts_check_compile_flags_needed.m4' adding 'pysam/include/htslib/m4/hts_hide_dynamic_syms.m4' adding 'pysam/include/htslib/m4/hts_prog_cc_warnings.m4' adding 'pysam/include/htslib/m4/pkg.m4' adding 'pysam/include/htslib/os/lzma_stub.h' adding 'pysam/include/htslib/os/rand.c' adding 'pysam/include/samtools/LICENSE' adding 'pysam/include/samtools/README' adding 'pysam/include/samtools/amplicon_stats.c' adding 'pysam/include/samtools/amplicon_stats.c.pysam.c' adding 'pysam/include/samtools/bam.c' adding 'pysam/include/samtools/bam.c.pysam.c' adding 'pysam/include/samtools/bam.h' adding 'pysam/include/samtools/bam2depth.c' adding 'pysam/include/samtools/bam2depth.c.pysam.c' adding 'pysam/include/samtools/bam_addrprg.c' adding 'pysam/include/samtools/bam_addrprg.c.pysam.c' adding 'pysam/include/samtools/bam_ampliconclip.c' adding 'pysam/include/samtools/bam_ampliconclip.c.pysam.c' adding 'pysam/include/samtools/bam_ampliconclip.h' adding 'pysam/include/samtools/bam_aux.c' adding 'pysam/include/samtools/bam_aux.c.pysam.c' adding 'pysam/include/samtools/bam_cat.c' adding 'pysam/include/samtools/bam_cat.c.pysam.c' adding 'pysam/include/samtools/bam_color.c' adding 'pysam/include/samtools/bam_color.c.pysam.c' adding 'pysam/include/samtools/bam_consensus.c' adding 'pysam/include/samtools/bam_consensus.c.pysam.c' adding 'pysam/include/samtools/bam_fastq.c' adding 'pysam/include/samtools/bam_fastq.c.pysam.c' adding 'pysam/include/samtools/bam_flags.c' adding 'pysam/include/samtools/bam_flags.c.pysam.c' adding 'pysam/include/samtools/bam_import.c' adding 'pysam/include/samtools/bam_import.c.pysam.c' adding 'pysam/include/samtools/bam_index.c' adding 'pysam/include/samtools/bam_index.c.pysam.c' adding 'pysam/include/samtools/bam_lpileup.c' adding 'pysam/include/samtools/bam_lpileup.c.pysam.c' adding 'pysam/include/samtools/bam_lpileup.h' adding 'pysam/include/samtools/bam_markdup.c' adding 'pysam/include/samtools/bam_markdup.c.pysam.c' adding 'pysam/include/samtools/bam_mate.c' adding 'pysam/include/samtools/bam_mate.c.pysam.c' adding 'pysam/include/samtools/bam_md.c' adding 'pysam/include/samtools/bam_md.c.pysam.c' adding 'pysam/include/samtools/bam_plbuf.c' adding 'pysam/include/samtools/bam_plbuf.c.pysam.c' adding 'pysam/include/samtools/bam_plbuf.h' adding 'pysam/include/samtools/bam_plcmd.c' adding 'pysam/include/samtools/bam_plcmd.c.pysam.c' adding 'pysam/include/samtools/bam_quickcheck.c' adding 'pysam/include/samtools/bam_quickcheck.c.pysam.c' adding 'pysam/include/samtools/bam_reheader.c' adding 'pysam/include/samtools/bam_reheader.c.pysam.c' adding 'pysam/include/samtools/bam_rmdup.c' adding 'pysam/include/samtools/bam_rmdup.c.pysam.c' adding 'pysam/include/samtools/bam_rmdupse.c' adding 'pysam/include/samtools/bam_rmdupse.c.pysam.c' adding 'pysam/include/samtools/bam_samples.c' adding 'pysam/include/samtools/bam_samples.c.pysam.c' adding 'pysam/include/samtools/bam_sort.c' adding 'pysam/include/samtools/bam_sort.c.pysam.c' adding 'pysam/include/samtools/bam_split.c' adding 'pysam/include/samtools/bam_split.c.pysam.c' adding 'pysam/include/samtools/bam_stat.c' adding 'pysam/include/samtools/bam_stat.c.pysam.c' adding 'pysam/include/samtools/bamshuf.c' adding 'pysam/include/samtools/bamshuf.c.pysam.c' adding 'pysam/include/samtools/bamtk.c' adding 'pysam/include/samtools/bamtk.c.pysam.c' adding 'pysam/include/samtools/bedcov.c' adding 'pysam/include/samtools/bedcov.c.pysam.c' adding 'pysam/include/samtools/bedidx.c' adding 'pysam/include/samtools/bedidx.c.pysam.c' adding 'pysam/include/samtools/bedidx.h' adding 'pysam/include/samtools/config.h' adding 'pysam/include/samtools/consensus_pileup.c' adding 'pysam/include/samtools/consensus_pileup.c.pysam.c' adding 'pysam/include/samtools/consensus_pileup.h' adding 'pysam/include/samtools/coverage.c' adding 'pysam/include/samtools/coverage.c.pysam.c' adding 'pysam/include/samtools/cram_size.c' adding 'pysam/include/samtools/cram_size.c.pysam.c' adding 'pysam/include/samtools/cut_target.c' adding 'pysam/include/samtools/cut_target.c.pysam.c' adding 'pysam/include/samtools/dict.c' adding 'pysam/include/samtools/dict.c.pysam.c' adding 'pysam/include/samtools/faidx.c' adding 'pysam/include/samtools/faidx.c.pysam.c' adding 'pysam/include/samtools/padding.c' adding 'pysam/include/samtools/padding.c.pysam.c' adding 'pysam/include/samtools/phase.c' adding 'pysam/include/samtools/phase.c.pysam.c' adding 'pysam/include/samtools/reference.c' adding 'pysam/include/samtools/reference.c.pysam.c' adding 'pysam/include/samtools/reset.c' adding 'pysam/include/samtools/reset.c.pysam.c' adding 'pysam/include/samtools/sam_opts.c' adding 'pysam/include/samtools/sam_opts.c.pysam.c' adding 'pysam/include/samtools/sam_opts.h' adding 'pysam/include/samtools/sam_utils.c' adding 'pysam/include/samtools/sam_utils.c.pysam.c' adding 'pysam/include/samtools/sam_utils.h' adding 'pysam/include/samtools/sam_view.c' adding 'pysam/include/samtools/sam_view.c.pysam.c' adding 'pysam/include/samtools/sample.c' adding 'pysam/include/samtools/sample.c.pysam.c' adding 'pysam/include/samtools/sample.h' adding 'pysam/include/samtools/samtools.h' adding 'pysam/include/samtools/samtools.pysam.c' adding 'pysam/include/samtools/samtools.pysam.h' adding 'pysam/include/samtools/splaysort.h' adding 'pysam/include/samtools/stats.c' adding 'pysam/include/samtools/stats.c.pysam.c' adding 'pysam/include/samtools/stats_isize.c' adding 'pysam/include/samtools/stats_isize.c.pysam.c' adding 'pysam/include/samtools/stats_isize.h' adding 'pysam/include/samtools/tmp_file.c' adding 'pysam/include/samtools/tmp_file.c.pysam.c' adding 'pysam/include/samtools/tmp_file.h' adding 'pysam/include/samtools/version.sh' adding 'pysam/include/samtools/lz4/LICENSE' adding 'pysam/include/samtools/lz4/lz4.c' adding 'pysam/include/samtools/lz4/lz4.c.pysam.c' adding 'pysam/include/samtools/lz4/lz4.h' adding 'pysam-0.23.3.dist-info/licenses/AUTHORS' adding 'pysam-0.23.3.dist-info/licenses/COPYING' adding 'pysam-0.23.3.dist-info/METADATA' adding 'pysam-0.23.3.dist-info/WHEEL' adding 'pysam-0.23.3.dist-info/top_level.txt' adding 'pysam-0.23.3.dist-info/RECORD' removing build/bdist.linux-s390x/wheel Building wheel for pysam (pyproject.toml): finished with status 'done' Created wheel for pysam: filename=pysam-0.23.3-cp314-cp314-linux_s390x.whl size=18711646 sha256=da444f3f3900be7bcb0ac08e643cae05618d5ec4af60b9af69e915601eade26c Stored in directory: /builddir/.cache/pip/wheels/50/eb/be/1465d8f0fddae09adb6471028b3bc51bfbf949bdc17e2cb452 Successfully built pysam ++ echo /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/build/lib.linux-s390x-cpython-314 + PYTHONPATH=/builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/build/lib.linux-s390x-cpython-314 + sphinx-build-3 doc html Running Sphinx v8.2.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: api.rst, benchmarking.rst, developer.rst, faq.rst, glossary.rst, index.rst, installation.rst, release.rst, usage.rst loading intersphinx inventory 'python' from https://docs.python.org/3.14/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/3.14/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3.14/objects.inv (Caused by NameResolutionError("HTTPSConnection(host='docs.python.org', port=443): Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 9 source files that are out of date updating environment: [new config] 9 added, 0 changed, 0 removed reading sources... [ 11%] api reading sources... [ 22%] benchmarking reading sources... [ 33%] developer reading sources... [ 44%] faq reading sources... [ 56%] glossary reading sources... [ 67%] index reading sources... [ 78%] installation reading sources... [ 89%] release reading sources... [100%] usage looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/html/_static/language_data.js Writing evaluated template result to /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/html/_static/documentation_options.js Writing evaluated template result to /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/html/_static/basic.css Writing evaluated template result to /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 11%] api writing output... [ 22%] benchmarking writing output... [ 33%] developer writing output... [ 44%] faq writing output... [ 56%] glossary writing output... [ 67%] index writing output... [ 78%] installation writing output... [ 89%] release writing output... [100%] usage generating indices... genindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in html. + rm -rf html/.doctrees html/.buildinfo + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.yGDPB2 + umask 022 + cd /builddir/build/BUILD/python-pysam-0.23.3-build + '[' /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-pysam-0.23.3-build + mkdir /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pysam-0.23.3 ++ ls /builddir/build/BUILD/python-pysam-0.23.3-build/pyproject-wheeldir/pysam-0.23.3-cp314-cp314-linux_s390x.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=pysam==0.23.3 + '[' -z pysam==0.23.3 ']' + TMPDIR=/builddir/build/BUILD/python-pysam-0.23.3-build/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-pysam-0.23.3-build/pyproject-wheeldir pysam==0.23.3 Using pip 25.3 from /usr/lib/python3.14/site-packages/pip (python 3.14) Looking in links: /builddir/build/BUILD/python-pysam-0.23.3-build/pyproject-wheeldir Processing /builddir/build/BUILD/python-pysam-0.23.3-build/pyproject-wheeldir/pysam-0.23.3-cp314-cp314-linux_s390x.whl Installing collected packages: pysam Successfully installed pysam-0.23.3 + '[' -d /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-pysam-0.23.3-build/python-pysam-0.23.3-3.fc44.s390x-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib/python3.14/site-packages ']' + '[' /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages '!=' /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib/python3.14/site-packages ']' + '[' -d /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages ']' + site_dirs+=("/usr/lib64/python3.14/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost %dir /usr/lib64/python3.14/site-packages/pysam-0.23.3.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam-0.23.3.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT --record /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam-0.23.3.dist-info/RECORD --output /builddir/build/BUILD/python-pysam-0.23.3-build/python-pysam-0.23.3-3.fc44.s390x-pyproject-record + rm -fv /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam-0.23.3.dist-info/RECORD removed '/builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam-0.23.3.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam-0.23.3.dist-info/REQUESTED removed '/builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam-0.23.3.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-pysam-0.23.3-build/python-pysam-0.23.3-3.fc44.s390x-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + rm /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libcalignedsegment.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libcalignmentfile.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libcbcf.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libcbcftools.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libcbgzf.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libcfaidx.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libchtslib.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libcsamfile.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libcsamtools.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libctabix.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libctabixproxies.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libcutils.pyx /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/libcvcf.pyx + rm /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/conftest_cstd.c /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/htslib_util.c /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/pysam_util.c + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.23.3-3.fc44 --unique-debug-suffix -0.23.3-3.fc44.s390x --unique-debug-src-base python-pysam-0.23.3-3.fc44.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3 find-debuginfo: starting Extracting debug info from 13 files DWARF-compressing 13 files sepdebugcrcfix: Updated 13 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-pysam-0.23.3-3.fc44.s390x find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + COMPRESS='gzip -9 -n' + COMPRESS_EXT=.gz + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib64/python3.14/site-packages/pysam/include/samtools/version.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.14/site-packages/pysam/include/htslib/version.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.14/site-packages/pysam/include/htslib/configure from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.14/site-packages/pysam/include/htslib/config.sub from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.14/site-packages/pysam/include/htslib/config.guess from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.14/site-packages/pysam/include/bcftools/version.sh from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.14 using python3.14 Bytecompiling .py files below /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14 using python3.14 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j2 /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/__pycache__/version.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/__pycache__/utils.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/__pycache__/samtools.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/__pycache__/bcftools.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/__pycache__/Pileup.cpython-314.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/__pycache__/config.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/include/__pycache__/__init__.cpython-314.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/lib64/python3.14/site-packages/pysam/__pycache__/Pileup.cpython-314.pyc: replacing with normalized version Scanned 41 directories and 798 files, processed 9 inodes, 9 modified (2 replaced + 7 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr Scanned 40 directories and 798 files, considered 798 files, read 22 files, linked 3 files, 0 errors sum of sizes of linked files: 77 bytes Reading /builddir/build/BUILD/python-pysam-0.23.3-build/SPECPARTS/rpm-debuginfo.specpart Processing files: python3-pysam-0.23.3-3.fc44.s390x Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.fBAkR1 + umask 022 + cd /builddir/build/BUILD/python-pysam-0.23.3-build + cd pysam-0.23.3 + DOCDIR=/builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/doc/python3-pysam + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/doc/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/README.rst /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/doc/python3-pysam + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.IIyjW4 + umask 022 + cd /builddir/build/BUILD/python-pysam-0.23.3-build + cd pysam-0.23.3 + LICENSEDIR=/builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/licenses/python3-pysam + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/COPYING /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/bcftools/LICENSE /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/htslib/LICENSE /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/samtools/LICENSE /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/licenses/python3-pysam + RPM_EC=0 ++ jobs -p + exit 0 warning: File listed twice: /usr/share/licenses/python3-pysam/LICENSE warning: File listed twice: /usr/share/licenses/python3-pysam/LICENSE Provides: bundled(bcftools) = 1.31 bundled(htslib) = 1.31 bundled(samtools) = 1.31 libcalignedsegment.cpython-314-s390x-linux-gnu.so()(64bit) libcalignmentfile.cpython-314-s390x-linux-gnu.so()(64bit) libcbcf.cpython-314-s390x-linux-gnu.so()(64bit) libcbcftools.cpython-314-s390x-linux-gnu.so()(64bit) libcbgzf.cpython-314-s390x-linux-gnu.so()(64bit) libcfaidx.cpython-314-s390x-linux-gnu.so()(64bit) libchtslib.cpython-314-s390x-linux-gnu.so()(64bit) libcsamfile.cpython-314-s390x-linux-gnu.so()(64bit) libcsamtools.cpython-314-s390x-linux-gnu.so()(64bit) libctabix.cpython-314-s390x-linux-gnu.so()(64bit) libctabixproxies.cpython-314-s390x-linux-gnu.so()(64bit) libcutils.cpython-314-s390x-linux-gnu.so()(64bit) libcvcf.cpython-314-s390x-linux-gnu.so()(64bit) python-pysam = 0.23.3-3.fc44 python3-pysam = 0.23.3-3.fc44 python3-pysam(s390-64) = 0.23.3-3.fc44 python3.14-pysam = 0.23.3-3.fc44 python3.14dist(pysam) = 0.23.3 python3dist(pysam) = 0.23.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.42.9000-17 libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcbcftools.cpython-314-s390x-linux-gnu.so()(64bit) libchtslib.cpython-314-s390x-linux-gnu.so()(64bit) libcsamtools.cpython-314-s390x-linux-gnu.so()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.4)(64bit) libm.so.6(GLIBC_2.43)(64bit) libz.so.1()(64bit) python(abi) = 3.14 rtld(GNU_HASH) Processing files: python3-pysam-devel-0.23.3-3.fc44.s390x Provides: python-pysam-devel = 0.23.3-3.fc44 python3-pysam-devel = 0.23.3-3.fc44 python3-pysam-devel(s390-64) = 0.23.3-3.fc44 python3.14-pysam-devel = 0.23.3-3.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh python(abi) = 3.14 Processing files: python-pysam-doc-0.23.3-3.fc44.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.nTYOQo + umask 022 + cd /builddir/build/BUILD/python-pysam-0.23.3-build + cd pysam-0.23.3 + DOCDIR=/builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/doc/python-pysam-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/doc/python-pysam-doc + cp -pr /builddir/build/BUILD/python-pysam-0.23.3-build/pysam-0.23.3/html /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT/usr/share/doc/python-pysam-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pysam-doc = 0.23.3-3.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python-pysam-debugsource-0.23.3-3.fc44.s390x Provides: python-pysam-debugsource = 0.23.3-3.fc44 python-pysam-debugsource(s390-64) = 0.23.3-3.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-pysam-debuginfo-0.23.3-3.fc44.s390x Provides: debuginfo(build-id) = 0ae3eb6769d273b0d3bc7d4a8724f7ac33dbfa5d debuginfo(build-id) = 3e6b9ad753992380237cf025b4fd33ff5ca29918 debuginfo(build-id) = 410c18b5aab63736ace6fd3d518e715c6ee5df5d debuginfo(build-id) = 9464c559ad694da21b661022371321957a9aa7e1 debuginfo(build-id) = 98024bba81df2c151daaf2cb8c51ae78c4fe6d3f debuginfo(build-id) = 99872dc67850e7a833da547b25fdeafda85e5146 debuginfo(build-id) = bb711b91481f8f237225b423a2e686c74ad418cf debuginfo(build-id) = cd8da5e3b7b4fe398d4e0509fea7d45664f29d54 debuginfo(build-id) = dc12543603979359b78c9e807432ab78444050e4 debuginfo(build-id) = e0de014246525b62c503b089c408e2365a7e07e9 debuginfo(build-id) = e732491530bb5d8dc6795c1261728b08ed67ab87 debuginfo(build-id) = edd3b3e959ef7e91c03f380f99824a64410d2c6d debuginfo(build-id) = f5de49348a2ae148eeaae73bdb2be288e4656fec libcalignedsegment.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libcalignmentfile.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libcbcf.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libcbcftools.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libcbgzf.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libcfaidx.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libchtslib.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libcsamfile.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libcsamtools.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libctabix.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libctabixproxies.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libcutils.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) libcvcf.cpython-314-s390x-linux-gnu.so-0.23.3-3.fc44.s390x.debug()(64bit) python-pysam-debuginfo = 0.23.3-3.fc44 python3-pysam-debuginfo = 0.23.3-3.fc44 python3-pysam-debuginfo(s390-64) = 0.23.3-3.fc44 python3.14-pysam-debuginfo = 0.23.3-3.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-pysam-debugsource(s390-64) = 0.23.3-3.fc44 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-pysam-0.23.3-build/BUILDROOT Wrote: /builddir/build/SRPMS/python-pysam-0.23.3-3.fc44.src.rpm Wrote: /builddir/build/RPMS/python3-pysam-debuginfo-0.23.3-3.fc44.s390x.rpm Wrote: /builddir/build/RPMS/python-pysam-debugsource-0.23.3-3.fc44.s390x.rpm Wrote: /builddir/build/RPMS/python3-pysam-devel-0.23.3-3.fc44.s390x.rpm Wrote: /builddir/build/RPMS/python-pysam-doc-0.23.3-3.fc44.noarch.rpm Wrote: /builddir/build/RPMS/python3-pysam-0.23.3-3.fc44.s390x.rpm RPM build warnings: File listed twice: /usr/share/licenses/python3-pysam/LICENSE File listed twice: /usr/share/licenses/python3-pysam/LICENSE Finish: rpmbuild python-pysam-0.23.3-3.fc44.src.rpm Finish: build phase for python-pysam-0.23.3-3.fc44.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1767276016.222837/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/python-pysam-0.23.3-3.fc44.src.rpm) Config(child) 7 minutes 10 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-pysam", "epoch": null, "version": "0.23.3", "release": "3.fc44", "arch": "s390x" }, { "name": "python-pysam-debugsource", "epoch": null, "version": "0.23.3", "release": "3.fc44", "arch": "s390x" }, { "name": "python3-pysam-devel", "epoch": null, "version": "0.23.3", "release": "3.fc44", "arch": "s390x" }, { "name": "python3-pysam-debuginfo", "epoch": null, "version": "0.23.3", "release": "3.fc44", "arch": "s390x" }, { "name": "python-pysam", "epoch": null, "version": "0.23.3", "release": "3.fc44", "arch": "src" }, { "name": "python-pysam-doc", "epoch": null, "version": "0.23.3", "release": "3.fc44", "arch": "noarch" } ] } RPMResults finished