Mock Version: 2.16 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-humann2.spec'], chrootPath='/var/lib/mock/centos-stream+epel-9-x86_64-1647847130.823384/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'feb4beb07b2a43ca9650e8ff70a63547', '-D', '/var/lib/mock/centos-stream+epel-9-x86_64-1647847130.823384/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-humann2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1647734400 Wrote: /builddir/build/SRPMS/python-humann2-2.8.2-1.el9.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-humann2.spec'], chrootPath='/var/lib/mock/centos-stream+epel-9-x86_64-1647847130.823384/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'df308c22875b4c4c8d1a78992c46dffe', '-D', '/var/lib/mock/centos-stream+epel-9-x86_64-1647847130.823384/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-humann2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1647734400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.cAu9CZ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf humann2-2.8.2 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/humann2-2.8.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd humann2-2.8.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.XbZJ5X + umask 022 + cd /builddir/build/BUILD + cd humann2-2.8.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 53.0.0) Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-humann2-2.8.2-1.el9.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-humann2.spec'], chrootPath='/var/lib/mock/centos-stream+epel-9-x86_64-1647847130.823384/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'c31ecd37abd444db8b9cb82b632ef451', '-D', '/var/lib/mock/centos-stream+epel-9-x86_64-1647847130.823384/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-humann2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1647734400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.usO0DF + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf humann2-2.8.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/humann2-2.8.2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd humann2-2.8.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.rDYkIj + umask 022 + cd /builddir/build/BUILD + cd humann2-2.8.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 53.0.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.36.2) warning: no files found matching 'humann2/tools/README.txt' warning: no files found matching 'humann2/maintenance/README.md' warning: no files found matching 'humann2/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann2/quantify/MinPath' warning: no previously-included files found matching 'humann2/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/uniref90-tol-lca.dat.bz2' warning: no previously-included files found matching 'humann2/data/misc/uniref50-tol-lca.dat.bz2' HOOK STDOUT: running egg_info HOOK STDOUT: writing humann2.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to humann2.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to humann2.egg-info/entry_points.txt HOOK STDOUT: writing top-level names to humann2.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'humann2.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'humann2.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.36.2) warning: no files found matching 'humann2/tools/README.txt' warning: no files found matching 'humann2/maintenance/README.md' warning: no files found matching 'humann2/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann2/quantify/MinPath' warning: no previously-included files found matching 'humann2/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/uniref90-tol-lca.dat.bz2' warning: no previously-included files found matching 'humann2/data/misc/uniref50-tol-lca.dat.bz2' HOOK STDOUT: running dist_info HOOK STDOUT: writing humann2.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to humann2.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to humann2.egg-info/entry_points.txt HOOK STDOUT: writing top-level names to humann2.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'humann2.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'humann2.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/humann2-2.8.2/humann2.dist-info' HOOK STDOUT: adding license file "LICENSE" (matched pattern "LICEN[CS]E*") + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-humann2-2.8.2-1.el9.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-humann2.spec'], chrootPath='/var/lib/mock/centos-stream+epel-9-x86_64-1647847130.823384/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '27232bd78fef404288795740a4738de4', '-D', '/var/lib/mock/centos-stream+epel-9-x86_64-1647847130.823384/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.l5zb3b66:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-humann2.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1647734400 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.nQ7xK0 + umask 022 + cd /builddir/build/BUILD + cd humann2-2.8.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv humann2.dist-info/ removed 'humann2.dist-info/LICENSE' removed 'humann2.dist-info/METADATA' removed 'humann2.dist-info/top_level.txt' removed 'humann2.dist-info/entry_points.txt' removed directory 'humann2.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 53.0.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.36.2) warning: no files found matching 'humann2/tools/README.txt' warning: no files found matching 'humann2/maintenance/README.md' warning: no files found matching 'humann2/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann2/quantify/MinPath' warning: no previously-included files found matching 'humann2/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/uniref90-tol-lca.dat.bz2' warning: no previously-included files found matching 'humann2/data/misc/uniref50-tol-lca.dat.bz2' HOOK STDOUT: running egg_info HOOK STDOUT: creating humann2.egg-info HOOK STDOUT: writing humann2.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to humann2.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to humann2.egg-info/entry_points.txt HOOK STDOUT: writing top-level names to humann2.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'humann2.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'humann2.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'humann2.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.36.2) warning: no files found matching 'humann2/tools/README.txt' warning: no files found matching 'humann2/maintenance/README.md' warning: no files found matching 'humann2/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann2/quantify/MinPath' warning: no previously-included files found matching 'humann2/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/uniref90-tol-lca.dat.bz2' warning: no previously-included files found matching 'humann2/data/misc/uniref50-tol-lca.dat.bz2' HOOK STDOUT: running dist_info HOOK STDOUT: writing humann2.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to humann2.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to humann2.egg-info/entry_points.txt HOOK STDOUT: writing top-level names to humann2.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'humann2.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'humann2.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/humann2-2.8.2/humann2.dist-info' HOOK STDOUT: adding license file "LICENSE" (matched pattern "LICEN[CS]E*") + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.WYNjyO + umask 022 + cd /builddir/build/BUILD + cd humann2-2.8.2 + mkdir -p /builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir + /usr/bin/python3 -m pip wheel --wheel-dir /builddir/build/BUILD/humann2-2.8.2/pyproject-wheeldir --no-deps --use-pep517 --no-build-isolation --disable-pip-version-check --no-clean --progress-bar off --verbose . Processing /builddir/build/BUILD/humann2-2.8.2 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir/pip-modern-metadata-qoutgrf6/humann2.egg-info writing /builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir/pip-modern-metadata-qoutgrf6/humann2.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir/pip-modern-metadata-qoutgrf6/humann2.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir/pip-modern-metadata-qoutgrf6/humann2.egg-info/entry_points.txt writing top-level names to /builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir/pip-modern-metadata-qoutgrf6/humann2.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir/pip-modern-metadata-qoutgrf6/humann2.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir/pip-modern-metadata-qoutgrf6/humann2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'humann2/tools/README.txt' warning: no files found matching 'humann2/maintenance/README.md' warning: no files found matching 'humann2/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann2/quantify/MinPath' warning: no previously-included files found matching 'humann2/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/uniref90-tol-lca.dat.bz2' warning: no previously-included files found matching 'humann2/data/misc/uniref50-tol-lca.dat.bz2' adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir/pip-modern-metadata-qoutgrf6/humann2.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir/pip-modern-metadata-qoutgrf6/humann2.dist-info' adding license file "LICENSE" (matched pattern "LICEN[CS]E*") Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: humann2 Building wheel for humann2 (pyproject.toml): started Running command Building wheel for humann2 (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/humann2 copying humann2/store.py -> build/lib/humann2 copying humann2/utilities.py -> build/lib/humann2 copying humann2/check.py -> build/lib/humann2 copying humann2/__init__.py -> build/lib/humann2 copying humann2/humann2.py -> build/lib/humann2 copying humann2/config.py -> build/lib/humann2 creating build/lib/humann2/tests copying humann2/tests/basic_tests_store.py -> build/lib/humann2/tests copying humann2/tests/functional_tests_biom_humann2.py -> build/lib/humann2/tests copying humann2/tests/basic_tests_nucleotide_search.py -> build/lib/humann2/tests copying humann2/tests/functional_tests_humann2.py -> build/lib/humann2/tests copying humann2/tests/functional_tests_biom_tools.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_store.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_quantify_families.py -> build/lib/humann2/tests copying humann2/tests/utils.py -> build/lib/humann2/tests copying humann2/tests/basic_tests_quantify_modules.py -> build/lib/humann2/tests copying humann2/tests/cfg.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_utilities.py -> build/lib/humann2/tests copying humann2/tests/basic_tests_utilities.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_translated_search.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_quantify_modules.py -> build/lib/humann2/tests copying humann2/tests/humann2_test.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_nucleotide_search.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_blastx_coverage.py -> build/lib/humann2/tests copying humann2/tests/functional_tests_tools.py -> build/lib/humann2/tests copying humann2/tests/__init__.py -> build/lib/humann2/tests creating build/lib/humann2/tools copying humann2/tools/humann2_config.py -> build/lib/humann2/tools copying humann2/tools/humann2_barplot.py -> build/lib/humann2/tools copying humann2/tools/join_tables.py -> build/lib/humann2/tools copying humann2/tools/infer_taxonomy.py -> build/lib/humann2/tools copying humann2/tools/split_table.py -> build/lib/humann2/tools copying humann2/tools/genefamilies_genus_level.py -> build/lib/humann2/tools copying humann2/tools/util.py -> build/lib/humann2/tools copying humann2/tools/humann2_associate.py -> build/lib/humann2/tools copying humann2/tools/humann2_expand_results_taxonomy.py -> build/lib/humann2/tools copying humann2/tools/humann2_databases.py -> build/lib/humann2/tools copying humann2/tools/merge_abundance.py -> build/lib/humann2/tools copying humann2/tools/split_stratified_table.py -> build/lib/humann2/tools copying humann2/tools/renorm_table.py -> build/lib/humann2/tools copying humann2/tools/reduce_table.py -> build/lib/humann2/tools copying humann2/tools/strain_profiler.py -> build/lib/humann2/tools copying humann2/tools/build_custom_database.py -> build/lib/humann2/tools copying humann2/tools/regroup_table.py -> build/lib/humann2/tools copying humann2/tools/rename_table.py -> build/lib/humann2/tools copying humann2/tools/humann2_humann1_kegg.py -> build/lib/humann2/tools copying humann2/tools/humann2_benchmark.py -> build/lib/humann2/tools copying humann2/tools/__init__.py -> build/lib/humann2/tools copying humann2/tools/rna_dna_norm.py -> build/lib/humann2/tools creating build/lib/humann2/search copying humann2/search/prescreen.py -> build/lib/humann2/search copying humann2/search/nucleotide.py -> build/lib/humann2/search copying humann2/search/translated.py -> build/lib/humann2/search copying humann2/search/blastx_coverage.py -> build/lib/humann2/search copying humann2/search/__init__.py -> build/lib/humann2/search copying humann2/search/pick_frames.py -> build/lib/humann2/search creating build/lib/humann2/quantify copying humann2/quantify/modules.py -> build/lib/humann2/quantify copying humann2/quantify/chi2cdf.py -> build/lib/humann2/quantify copying humann2/quantify/families.py -> build/lib/humann2/quantify copying humann2/quantify/xipe.py -> build/lib/humann2/quantify copying humann2/quantify/__init__.py -> build/lib/humann2/quantify copying humann2/quantify/MinPath12hmp.py -> build/lib/humann2/quantify copying humann2/humann2.cfg -> build/lib/humann2 creating build/lib/humann2/data creating build/lib/humann2/data/pathways copying humann2/data/pathways/unipathway_pathways -> build/lib/humann2/data/pathways copying humann2/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/lib/humann2/data/pathways copying humann2/data/pathways/metacyc_pathways -> build/lib/humann2/data/pathways copying humann2/data/pathways/metacyc_pathways_structured -> build/lib/humann2/data/pathways copying humann2/data/pathways/metacyc_pathways_to_organisms -> build/lib/humann2/data/pathways copying humann2/data/pathways/metacyc_pathways_structured_filtered -> build/lib/humann2/data/pathways copying humann2/data/pathways/unipathway_uniprots.uniref.bz2 -> build/lib/humann2/data/pathways creating build/lib/humann2/data/misc copying humann2/data/misc/map_go_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_uniref50_name.txt.bz2 -> build/lib/humann2/data/misc copying humann2/data/misc/map_ko_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_transporter_uniref50.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_kegg-pwy_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_metacyc-pwy_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_pfam_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_metacyc-rxn_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_level4ec_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/KeggOrgId2OrgNameTable.txt -> build/lib/humann2/data/misc copying humann2/data/misc/map_kegg-mdl_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_eggnog_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/README.txt -> build/lib/humann2/data/misc creating build/lib/humann2/data/uniref_DEMO copying humann2/data/uniref_DEMO/uniref90_demo_prots.dmnd -> build/lib/humann2/data/uniref_DEMO copying humann2/data/uniref_DEMO/uniref90_demo_prots.faa -> build/lib/humann2/data/uniref_DEMO creating build/lib/humann2/data/chocophlan_DEMO copying humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v0.1.1.ffn.gz -> build/lib/humann2/data/chocophlan_DEMO copying humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v0.1.1.ffn.gz -> build/lib/humann2/data/chocophlan_DEMO creating build/lib/humann2/tests/data copying humann2/tests/data/reactions.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/id_mapping.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/demo_genefamilies_with_names.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/id_mapping_gene_table.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/lib/humann2/tests/data copying humann2/tests/data/file_no_space_identifier.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_genefamilies.biom -> build/lib/humann2/tests/data copying humann2/tests/data/demo_genefamilies.biom -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_with_header.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/test_pathways_results.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/convert_file.fasta -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/usearch_output.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/file_space_identifier.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/annotations.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/demo.fasta -> build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_genefamilies_sample1.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/file.bam -> build/lib/humann2/tests/data copying humann2/tests/data/demo_pathabundance_with_names.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/demo_metaphlan_bugs_list.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/demo.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/id_mapping_coverage_filter.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/file_without_header.sam -> build/lib/humann2/tests/data copying humann2/tests/data/demo_pathcoverage_with_names.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/test_pathways_flat.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_without_header.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/convert_file_at_character.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/usearch_with_uniref50_output.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/gene_families_uniref50_with_names.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/demo.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/genefamilies_biom_match.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/annotations.sam -> build/lib/humann2/tests/data copying humann2/tests/data/file_without_header_with_tags.sam -> build/lib/humann2/tests/data copying humann2/tests/data/file.fasta -> build/lib/humann2/tests/data copying humann2/tests/data/file.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/convert_file_pick_frames.fasta -> build/lib/humann2/tests/data copying humann2/tests/data/test_pathways.dat -> build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_genefamilies.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/file_with_header.sam -> build/lib/humann2/tests/data copying humann2/tests/data/convert_file_multiline.fasta -> build/lib/humann2/tests/data copying humann2/tests/data/small_map_uniref50_name.txt.gz -> build/lib/humann2/tests/data copying humann2/tests/data/2_aligned_3_unaligned.sam -> build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_genefamilies_sample2.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/genefamilies.biom -> build/lib/humann2/tests/data copying humann2/tests/data/demo_genefamilies.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/convert_file.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/file_single_line_sequences.fasta -> build/lib/humann2/tests/data copying humann2/tests/data/gene_families.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/demo.sam -> build/lib/humann2/tests/data creating build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table creating build/lib/humann2/tests/data/tooltest-strain_profiler copying humann2/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/lib/humann2/tests/data/tooltest-strain_profiler copying humann2/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/lib/humann2/tests/data/tooltest-strain_profiler copying humann2/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/lib/humann2/tests/data/tooltest-strain_profiler copying humann2/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/lib/humann2/tests/data/tooltest-strain_profiler creating build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/lib/humann2/tests/data/tooltest-renorm_table creating build/lib/humann2/tests/data/tooltest-infer_taxonomy copying humann2/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/lib/humann2/tests/data/tooltest-infer_taxonomy copying humann2/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/lib/humann2/tests/data/tooltest-infer_taxonomy copying humann2/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/lib/humann2/tests/data/tooltest-infer_taxonomy creating build/lib/humann2/tests/data/tooltest-merge_abundance_tables copying humann2/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables copying humann2/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables copying humann2/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables copying humann2/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables copying humann2/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables creating build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/lib/humann2/tests/data/tooltest-rna_dna_norm creating build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-input.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-input.biom -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/lib/humann2/tests/data/tooltest-rename_table installing to build/bdist.linux-x86_64/wheel running install Downloading counter file to track humann2 downloads since the global PyPI download stats are currently turned off. Downloading http://bitbucket.org/biobakery/humann2/downloads/counter.txt WARNING: Unable to download http://bitbucket.org/biobakery/humann2/downloads/counter.txt Installing minpath. Downloading http://omics.informatics.indiana.edu/mg/get.php?justdoit=yes&software=minpath1.2.tar.gz WARNING: Unable to download http://omics.informatics.indiana.edu/mg/get.php?justdoit=yes&software=minpath1.2.tar.gz WARNING: Unable to extract minpath. running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/humann2 creating build/bdist.linux-x86_64/wheel/humann2/data creating build/bdist.linux-x86_64/wheel/humann2/data/chocophlan_DEMO copying build/lib/humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v0.1.1.ffn.gz -> build/bdist.linux-x86_64/wheel/humann2/data/chocophlan_DEMO copying build/lib/humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v0.1.1.ffn.gz -> build/bdist.linux-x86_64/wheel/humann2/data/chocophlan_DEMO creating build/bdist.linux-x86_64/wheel/humann2/data/uniref_DEMO copying build/lib/humann2/data/uniref_DEMO/uniref90_demo_prots.faa -> build/bdist.linux-x86_64/wheel/humann2/data/uniref_DEMO copying build/lib/humann2/data/uniref_DEMO/uniref90_demo_prots.dmnd -> build/bdist.linux-x86_64/wheel/humann2/data/uniref_DEMO creating build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/README.txt -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_eggnog_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_kegg-mdl_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/KeggOrgId2OrgNameTable.txt -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_level4ec_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_metacyc-rxn_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_pfam_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_metacyc-pwy_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_kegg-pwy_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_transporter_uniref50.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_ko_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_uniref50_name.txt.bz2 -> build/bdist.linux-x86_64/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_go_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/data/misc creating build/bdist.linux-x86_64/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/unipathway_uniprots.uniref.bz2 -> build/bdist.linux-x86_64/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/metacyc_pathways_structured_filtered -> build/bdist.linux-x86_64/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/metacyc_pathways_to_organisms -> build/bdist.linux-x86_64/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/metacyc_pathways_structured -> build/bdist.linux-x86_64/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/metacyc_pathways -> build/bdist.linux-x86_64/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/bdist.linux-x86_64/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/unipathway_pathways -> build/bdist.linux-x86_64/wheel/humann2/data/pathways copying build/lib/humann2/humann2.cfg -> build/bdist.linux-x86_64/wheel/humann2 creating build/bdist.linux-x86_64/wheel/humann2/quantify copying build/lib/humann2/quantify/MinPath12hmp.py -> build/bdist.linux-x86_64/wheel/humann2/quantify copying build/lib/humann2/quantify/__init__.py -> build/bdist.linux-x86_64/wheel/humann2/quantify copying build/lib/humann2/quantify/xipe.py -> build/bdist.linux-x86_64/wheel/humann2/quantify copying build/lib/humann2/quantify/families.py -> build/bdist.linux-x86_64/wheel/humann2/quantify copying build/lib/humann2/quantify/chi2cdf.py -> build/bdist.linux-x86_64/wheel/humann2/quantify copying build/lib/humann2/quantify/modules.py -> build/bdist.linux-x86_64/wheel/humann2/quantify creating build/bdist.linux-x86_64/wheel/humann2/search copying build/lib/humann2/search/pick_frames.py -> build/bdist.linux-x86_64/wheel/humann2/search copying build/lib/humann2/search/__init__.py -> build/bdist.linux-x86_64/wheel/humann2/search copying build/lib/humann2/search/blastx_coverage.py -> build/bdist.linux-x86_64/wheel/humann2/search copying build/lib/humann2/search/translated.py -> build/bdist.linux-x86_64/wheel/humann2/search copying build/lib/humann2/search/nucleotide.py -> build/bdist.linux-x86_64/wheel/humann2/search copying build/lib/humann2/search/prescreen.py -> build/bdist.linux-x86_64/wheel/humann2/search creating build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/rna_dna_norm.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/__init__.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/humann2_benchmark.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/humann2_humann1_kegg.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/rename_table.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/regroup_table.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/build_custom_database.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/strain_profiler.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/reduce_table.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/renorm_table.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/split_stratified_table.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/merge_abundance.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/humann2_databases.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/humann2_expand_results_taxonomy.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/humann2_associate.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/util.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/genefamilies_genus_level.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/split_table.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/infer_taxonomy.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/join_tables.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/humann2_barplot.py -> build/bdist.linux-x86_64/wheel/humann2/tools copying build/lib/humann2/tools/humann2_config.py -> build/bdist.linux-x86_64/wheel/humann2/tools creating build/bdist.linux-x86_64/wheel/humann2/tests creating build/bdist.linux-x86_64/wheel/humann2/tests/data creating build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input.biom -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rename_table creating build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-rna_dna_norm creating build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-merge_abundance_tables copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-merge_abundance_tables copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-merge_abundance_tables copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-merge_abundance_tables copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-merge_abundance_tables copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-merge_abundance_tables creating build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-infer_taxonomy copying build/lib/humann2/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-infer_taxonomy copying build/lib/humann2/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-infer_taxonomy copying build/lib/humann2/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-infer_taxonomy creating build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-renorm_table creating build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-strain_profiler copying build/lib/humann2/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-strain_profiler copying build/lib/humann2/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-strain_profiler copying build/lib/humann2/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-strain_profiler copying build/lib/humann2/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-strain_profiler creating build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/bdist.linux-x86_64/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/demo.sam -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/gene_families.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_single_line_sequences.fasta -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/convert_file.fastq -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo_genefamilies.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/genefamilies.biom -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/multi_sample_genefamilies_sample2.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/2_aligned_3_unaligned.sam -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/small_map_uniref50_name.txt.gz -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/convert_file_multiline.fasta -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_with_header.sam -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/multi_sample_genefamilies.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/test_pathways.dat -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/convert_file_pick_frames.fasta -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file.fastq -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file.fasta -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_without_header_with_tags.sam -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/annotations.sam -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/genefamilies_biom_match.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo.fastq -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/gene_families_uniref50_with_names.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/usearch_with_uniref50_output.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/convert_file_at_character.fastq -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/rapsearch2_output_without_header.m8 -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/test_pathways_flat.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo_pathcoverage_with_names.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_without_header.sam -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/id_mapping_coverage_filter.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo.m8 -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo_metaphlan_bugs_list.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo_pathabundance_with_names.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file.bam -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/multi_sample_genefamilies_sample1.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo.fasta -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/annotations.m8 -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_space_identifier.fastq -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/usearch_output.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/convert_file.fasta -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/test_pathways_results.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/rapsearch2_output_with_header.m8 -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo_genefamilies.biom -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/multi_sample_genefamilies.biom -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_no_space_identifier.fastq -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/id_mapping_gene_table.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo_genefamilies_with_names.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/id_mapping.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/data/reactions.tsv -> build/bdist.linux-x86_64/wheel/humann2/tests/data copying build/lib/humann2/tests/__init__.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/functional_tests_tools.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_blastx_coverage.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_nucleotide_search.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/humann2_test.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_quantify_modules.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_translated_search.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/basic_tests_utilities.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_utilities.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/cfg.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/basic_tests_quantify_modules.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/utils.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_quantify_families.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_store.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/functional_tests_biom_tools.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/functional_tests_humann2.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/basic_tests_nucleotide_search.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/functional_tests_biom_humann2.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/tests/basic_tests_store.py -> build/bdist.linux-x86_64/wheel/humann2/tests copying build/lib/humann2/config.py -> build/bdist.linux-x86_64/wheel/humann2 copying build/lib/humann2/humann2.py -> build/bdist.linux-x86_64/wheel/humann2 copying build/lib/humann2/__init__.py -> build/bdist.linux-x86_64/wheel/humann2 copying build/lib/humann2/check.py -> build/bdist.linux-x86_64/wheel/humann2 copying build/lib/humann2/utilities.py -> build/bdist.linux-x86_64/wheel/humann2 copying build/lib/humann2/store.py -> build/bdist.linux-x86_64/wheel/humann2 running install_egg_info running egg_info creating humann2.egg-info writing humann2.egg-info/PKG-INFO writing dependency_links to humann2.egg-info/dependency_links.txt writing entry points to humann2.egg-info/entry_points.txt writing top-level names to humann2.egg-info/top_level.txt writing manifest file 'humann2.egg-info/SOURCES.txt' reading manifest file 'humann2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'humann2/tools/README.txt' warning: no files found matching 'humann2/maintenance/README.md' warning: no files found matching 'humann2/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann2/quantify/MinPath' warning: no previously-included files found matching 'humann2/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/uniref90-tol-lca.dat.bz2' warning: no previously-included files found matching 'humann2/data/misc/uniref50-tol-lca.dat.bz2' adding license file 'LICENSE' writing manifest file 'humann2.egg-info/SOURCES.txt' Copying humann2.egg-info to build/bdist.linux-x86_64/wheel/humann2-2.8.2-py3.9.egg-info running install_scripts Installing latest glpk. Downloading http://ftp.gnu.org/gnu/glpk/glpk-4.55.tar.gz WARNING: Unable to download http://ftp.gnu.org/gnu/glpk/glpk-4.55.tar.gz WARNING: Unable to extract glpk. WARNING: glpk was not downloaded. WARNING: Please install gcc. WARNING: Errors installing new glpk version. Installing diamond. Downloading http://github.com/bbuchfink/diamond/releases/download/v0.8.22/diamond-linux64.tar.gz WARNING: Unable to download http://github.com/bbuchfink/diamond/releases/download/v0.8.22/diamond-linux64.tar.gz WARNING: Unable to extract diamond. WARNING: Unable to install diamond. Please install diamond. Installing bowtie2. Downloading http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.3/bowtie2-2.2.3-linux-x86_64.zip WARNING: Unable to download http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.3/bowtie2-2.2.3-linux-x86_64.zip WARNING: Unable to extract bowtie2. WARNING: Bowtie2 files not found. WARNING: Unable to install bowtie2. Please install bowtie2. adding license file "LICENSE" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-x86_64/wheel/humann2-2.8.2.dist-info/WHEEL creating '/builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir/pip-wheel-l_qkapsd/tmp5r_9ii7f/humann2-2.8.2-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'humann2/__init__.py' adding 'humann2/check.py' adding 'humann2/config.py' adding 'humann2/humann2.cfg' adding 'humann2/humann2.py' adding 'humann2/store.py' adding 'humann2/utilities.py' adding 'humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v0.1.1.ffn.gz' adding 'humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v0.1.1.ffn.gz' adding 'humann2/data/misc/KeggOrgId2OrgNameTable.txt' adding 'humann2/data/misc/README.txt' adding 'humann2/data/misc/map_eggnog_name.txt.gz' adding 'humann2/data/misc/map_go_name.txt.gz' adding 'humann2/data/misc/map_kegg-mdl_name.txt.gz' adding 'humann2/data/misc/map_kegg-pwy_name.txt.gz' adding 'humann2/data/misc/map_ko_name.txt.gz' adding 'humann2/data/misc/map_level4ec_name.txt.gz' adding 'humann2/data/misc/map_metacyc-pwy_name.txt.gz' adding 'humann2/data/misc/map_metacyc-rxn_name.txt.gz' adding 'humann2/data/misc/map_pfam_name.txt.gz' adding 'humann2/data/misc/map_transporter_uniref50.txt.gz' adding 'humann2/data/misc/map_uniref50_name.txt.bz2' adding 'humann2/data/pathways/metacyc_pathways' adding 'humann2/data/pathways/metacyc_pathways_structured' adding 'humann2/data/pathways/metacyc_pathways_structured_filtered' adding 'humann2/data/pathways/metacyc_pathways_to_organisms' adding 'humann2/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2' adding 'humann2/data/pathways/unipathway_pathways' adding 'humann2/data/pathways/unipathway_uniprots.uniref.bz2' adding 'humann2/data/uniref_DEMO/uniref90_demo_prots.dmnd' adding 'humann2/data/uniref_DEMO/uniref90_demo_prots.faa' adding 'humann2/quantify/MinPath12hmp.py' adding 'humann2/quantify/__init__.py' adding 'humann2/quantify/chi2cdf.py' adding 'humann2/quantify/families.py' adding 'humann2/quantify/modules.py' adding 'humann2/quantify/xipe.py' adding 'humann2/search/__init__.py' adding 'humann2/search/blastx_coverage.py' adding 'humann2/search/nucleotide.py' adding 'humann2/search/pick_frames.py' adding 'humann2/search/prescreen.py' adding 'humann2/search/translated.py' adding 'humann2/tests/__init__.py' adding 'humann2/tests/advanced_tests_blastx_coverage.py' adding 'humann2/tests/advanced_tests_nucleotide_search.py' adding 'humann2/tests/advanced_tests_quantify_families.py' adding 'humann2/tests/advanced_tests_quantify_modules.py' adding 'humann2/tests/advanced_tests_store.py' adding 'humann2/tests/advanced_tests_translated_search.py' adding 'humann2/tests/advanced_tests_utilities.py' adding 'humann2/tests/basic_tests_nucleotide_search.py' adding 'humann2/tests/basic_tests_quantify_modules.py' adding 'humann2/tests/basic_tests_store.py' adding 'humann2/tests/basic_tests_utilities.py' adding 'humann2/tests/cfg.py' adding 'humann2/tests/functional_tests_biom_humann2.py' adding 'humann2/tests/functional_tests_biom_tools.py' adding 'humann2/tests/functional_tests_humann2.py' adding 'humann2/tests/functional_tests_tools.py' adding 'humann2/tests/humann2_test.py' adding 'humann2/tests/utils.py' adding 'humann2/tests/data/2_aligned_3_unaligned.sam' adding 'humann2/tests/data/annotations.m8' adding 'humann2/tests/data/annotations.sam' adding 'humann2/tests/data/convert_file.fasta' adding 'humann2/tests/data/convert_file.fastq' adding 'humann2/tests/data/convert_file_at_character.fastq' adding 'humann2/tests/data/convert_file_multiline.fasta' adding 'humann2/tests/data/convert_file_pick_frames.fasta' adding 'humann2/tests/data/demo.fasta' adding 'humann2/tests/data/demo.fastq' adding 'humann2/tests/data/demo.m8' adding 'humann2/tests/data/demo.sam' adding 'humann2/tests/data/demo_genefamilies.biom' adding 'humann2/tests/data/demo_genefamilies.tsv' adding 'humann2/tests/data/demo_genefamilies_with_names.tsv' adding 'humann2/tests/data/demo_metaphlan_bugs_list.tsv' adding 'humann2/tests/data/demo_pathabundance_with_names.tsv' adding 'humann2/tests/data/demo_pathcoverage_with_names.tsv' adding 'humann2/tests/data/file.bam' adding 'humann2/tests/data/file.fasta' adding 'humann2/tests/data/file.fastq' adding 'humann2/tests/data/file_no_space_identifier.fastq' adding 'humann2/tests/data/file_single_line_sequences.fasta' adding 'humann2/tests/data/file_space_identifier.fastq' adding 'humann2/tests/data/file_with_header.sam' adding 'humann2/tests/data/file_without_header.sam' adding 'humann2/tests/data/file_without_header_with_tags.sam' adding 'humann2/tests/data/gene_families.tsv' adding 'humann2/tests/data/gene_families_uniref50_with_names.tsv' adding 'humann2/tests/data/genefamilies.biom' adding 'humann2/tests/data/genefamilies_biom_match.tsv' adding 'humann2/tests/data/id_mapping.tsv' adding 'humann2/tests/data/id_mapping_coverage_filter.tsv' adding 'humann2/tests/data/id_mapping_gene_table.tsv' adding 'humann2/tests/data/multi_sample_biom_genefamilies_sample1.biom' adding 'humann2/tests/data/multi_sample_biom_genefamilies_sample2.biom' adding 'humann2/tests/data/multi_sample_genefamilies.biom' adding 'humann2/tests/data/multi_sample_genefamilies.tsv' adding 'humann2/tests/data/multi_sample_genefamilies_sample1.tsv' adding 'humann2/tests/data/multi_sample_genefamilies_sample2.tsv' adding 'humann2/tests/data/rapsearch2_output_with_header.m8' adding 'humann2/tests/data/rapsearch2_output_with_header_no_log.m8' adding 'humann2/tests/data/rapsearch2_output_without_header.m8' adding 'humann2/tests/data/rapsearch2_output_without_header_coverage_filter.m8' adding 'humann2/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8' adding 'humann2/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8' adding 'humann2/tests/data/reactions.tsv' adding 'humann2/tests/data/small_map_uniref50_name.txt.gz' adding 'humann2/tests/data/test_pathways.dat' adding 'humann2/tests/data/test_pathways_flat.tsv' adding 'humann2/tests/data/test_pathways_results.tsv' adding 'humann2/tests/data/usearch_output.tsv' adding 'humann2/tests/data/usearch_with_uniref50_output.tsv' adding 'humann2/tests/data/tooltest-infer_taxonomy/genes.tsv' adding 'humann2/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv' adding 'humann2/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh' adding 'humann2/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv' adding 'humann2/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv' adding 'humann2/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh' adding 'humann2/tests/data/tooltest-merge_abundance_tables/merge_output.tsv' adding 'humann2/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt' adding 'humann2/tests/data/tooltest-rename_table/pathabundance_without_names.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_command.sh' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom.sh' adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom.txt.gz' adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom_command.sh' adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-input.biom' adding 'humann2/tests/data/tooltest-rename_table/rename_table-input.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-input_ec.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-input_ko.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-input_rxn.txt' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-command.sh' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-input.biom' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-input.txt' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv' adding 'humann2/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv' adding 'humann2/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv' adding 'humann2/tests/data/tooltest-strain_profiler/strain_profiler-command.sh' adding 'humann2/tests/data/tooltest-strain_profiler/strain_profiler-input.txt' adding 'humann2/tools/__init__.py' adding 'humann2/tools/build_custom_database.py' adding 'humann2/tools/genefamilies_genus_level.py' adding 'humann2/tools/humann2_associate.py' adding 'humann2/tools/humann2_barplot.py' adding 'humann2/tools/humann2_benchmark.py' adding 'humann2/tools/humann2_config.py' adding 'humann2/tools/humann2_databases.py' adding 'humann2/tools/humann2_expand_results_taxonomy.py' adding 'humann2/tools/humann2_humann1_kegg.py' adding 'humann2/tools/infer_taxonomy.py' adding 'humann2/tools/join_tables.py' adding 'humann2/tools/merge_abundance.py' adding 'humann2/tools/reduce_table.py' adding 'humann2/tools/regroup_table.py' adding 'humann2/tools/rename_table.py' adding 'humann2/tools/renorm_table.py' adding 'humann2/tools/rna_dna_norm.py' adding 'humann2/tools/split_stratified_table.py' adding 'humann2/tools/split_table.py' adding 'humann2/tools/strain_profiler.py' adding 'humann2/tools/util.py' adding 'humann2-2.8.2.dist-info/LICENSE' adding 'humann2-2.8.2.dist-info/METADATA' adding 'humann2-2.8.2.dist-info/WHEEL' adding 'humann2-2.8.2.dist-info/entry_points.txt' adding 'humann2-2.8.2.dist-info/top_level.txt' adding 'humann2-2.8.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for humann2 (pyproject.toml): finished with status 'done' Created wheel for humann2: filename=humann2-2.8.2-py3-none-any.whl size=57351419 sha256=eb1a6fbe78029fef9a6c7d8d67dc6dee63a62d8718069510de358f304ffa5650 Stored in directory: /builddir/.cache/pip/wheels/94/3c/64/ee18ee9fab2753e02ae12fc413d1e2953998263372fd784e09 Successfully built humann2 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.8fK8n2 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64 ++ dirname /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64 + cd humann2-2.8.2 ++ ls /builddir/build/BUILD/humann2-2.8.2/pyproject-wheeldir/humann2-2.8.2-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=humann2==2.8.2 + TMPDIR=/builddir/build/BUILD/humann2-2.8.2/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64 --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/humann2-2.8.2/pyproject-wheeldir humann2==2.8.2 Using pip 22.0.4 from /usr/lib/python3.9/site-packages/pip (python 3.9) Looking in links: /builddir/build/BUILD/humann2-2.8.2/pyproject-wheeldir Processing ./pyproject-wheeldir/humann2-2.8.2-py3-none-any.whl Installing collected packages: humann2 Creating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2 to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_associate to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_barplot to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_benchmark to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_build_custom_database to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_config to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_databases to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_genefamilies_genus_level to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_humann1_kegg to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_infer_taxonomy to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_join_tables to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_reduce_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_regroup_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_rename_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_renorm_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_rna_dna_norm to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_split_stratified_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_split_table to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_strain_profiler to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_test to 755 changing mode of /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_unpack_pathways to 755 Successfully installed humann2-2.8.2 + '[' -d /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin ']' + '[' -f /usr/bin/pathfix3.9.py ']' + pathfix=/usr/bin/pathfix3.9.py + '[' -z s ']' + shebang_flags=-kas + /usr/bin/pathfix3.9.py -pni /usr/bin/python3 -kas /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2 /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_associate /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_barplot /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_benchmark /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_build_custom_database /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_config /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_databases /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_genefamilies_genus_level /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_humann1_kegg /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_infer_taxonomy /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_join_tables /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_reduce_table /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_regroup_table /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_rename_table /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_renorm_table /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_rna_dna_norm /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_split_stratified_table /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_split_table /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_strain_profiler /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_test /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_unpack_pathways /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_associate: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_barplot: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_benchmark: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_build_custom_database: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_config: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_databases: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_genefamilies_genus_level: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_humann1_kegg: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_infer_taxonomy: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_join_tables: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_reduce_table: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_regroup_table: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_rename_table: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_renorm_table: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_rna_dna_norm: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_split_stratified_table: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_split_table: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_strain_profiler: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_test: updating /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/humann2_unpack_pathways: updating + rm -rfv /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib/python3.9/site-packages ']' + site_dirs+=("/usr/lib/python3.9/site-packages") + '[' /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib64/python3.9/site-packages '!=' /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib/python3.9/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib64/python3.9/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.9/site-packages/humann2-2.8.2.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib/python3.9/site-packages/humann2-2.8.2.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64 --record /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib/python3.9/site-packages/humann2-2.8.2.dist-info/RECORD --output /builddir/build/BUILD/pyproject-record + rm -fv /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib/python3.9/site-packages/humann2-2.8.2.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib/python3.9/site-packages/humann2-2.8.2.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib/python3.9/site-packages/humann2-2.8.2.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib/python3.9/site-packages/humann2-2.8.2.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/pyproject-files --output-modules /builddir/build/BUILD/pyproject-modules --buildroot /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64 --sitelib /usr/lib/python3.9/site-packages --sitearch /usr/lib64/python3.9/site-packages --python-version 3.9 --pyproject-record /builddir/build/BUILD/pyproject-record --prefix /usr '*' +auto + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2.8.2-1.el9 --unique-debug-suffix -2.8.2-1.el9.x86_64 --unique-debug-src-base python-humann2-2.8.2-1.el9.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/humann2-2.8.2 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib/python3.9 using python3.9 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Q5Bgf3 + umask 022 + cd /builddir/build/BUILD + cd humann2-2.8.2 + '[' '!' -f /builddir/build/BUILD/pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib/python3.9/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64/usr/lib/python3.9/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -s /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/pyproject-modules -t Check import: humann2 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-humann2-2.8.2-1.el9.noarch Provides: python-humann2 = 2.8.2-1.el9 python3-humann2 = 2.8.2-1.el9 python3.9-humann2 = 2.8.2-1.el9 python3.9dist(humann2) = 2.8.2 python3dist(humann2) = 2.8.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.9 Obsoletes: python39-humann2 < 2.8.2-1.el9 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64 Wrote: /builddir/build/SRPMS/python-humann2-2.8.2-1.el9.src.rpm Wrote: /builddir/build/RPMS/python3-humann2-2.8.2-1.el9.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.iMjFFL + umask 022 + cd /builddir/build/BUILD + cd humann2-2.8.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-humann2-2.8.2-1.el9.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0