Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '8f98d479f318466f809d8d494a790aa1', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1685059200 Wrote: /builddir/build/SRPMS/python-glypy-1.0.9-1.el9.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'cce020263bcb49ba871184601acabfe4', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1685059200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ejkyfh + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf glypy-1.0.9 + /usr/bin/gzip -dc /builddir/build/SOURCES/glypy-1.0.9.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd glypy-1.0.9 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Z9K6Mk + umask 022 + cd /builddir/build/BUILD + cd glypy-1.0.9 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(toml) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/glypy-1.0.9/pyproject-wheeldir Import error: No module named 'toml' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-glypy-1.0.9-1.el9.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '09bf2a712aa04f5a81507006c0806017', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1685059200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.oVdeyM + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf glypy-1.0.9 + /usr/bin/gzip -dc /builddir/build/SOURCES/glypy-1.0.9.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd glypy-1.0.9 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.9zwlWX + umask 022 + cd /builddir/build/BUILD + cd glypy-1.0.9 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(toml) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/glypy-1.0.9/pyproject-wheeldir Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 67.8.0) Handling wheel from build-system.requires Requirement not satisfied: wheel Handling Cython from build-system.requires Requirement not satisfied: Cython Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.8.0) Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-glypy-1.0.9-1.el9.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '78382a93d3fa414f953ac4458afd2ab1', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1685059200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.UAoC1x + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf glypy-1.0.9 + /usr/bin/gzip -dc /builddir/build/SOURCES/glypy-1.0.9.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd glypy-1.0.9 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.x2Fvl3 + umask 022 + cd /builddir/build/BUILD + cd glypy-1.0.9 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(toml) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/glypy-1.0.9/pyproject-wheeldir Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 67.8.0) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.36.2) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 0.29.22) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.8.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.36.2) warning: no files found matching '*.ttl' under directory 'src/glypy/io/data' warning: no files found matching '*.hjson' under directory 'src/glypy/io/nomenclature/data' HOOK STDOUT: running egg_info HOOK STDOUT: writing src/glypy.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to src/glypy.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to src/glypy.egg-info/requires.txt HOOK STDOUT: writing top-level names to src/glypy.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'src/glypy.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: adding license file 'NOTICE' HOOK STDOUT: writing manifest file 'src/glypy.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.36.2) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 985, in run_command log.info("running %s", command) Message: 'running %s' Arguments: ('dist_info',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 302, in run self.mkpath(self.egg_info) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 342, in mkpath dir_util.mkpath(name, mode, dry_run=self.dry_run) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dir_util.py", line 71, in mkpath log.info("creating %s", head) Message: 'creating %s' Arguments: ('glypy.egg-info',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 690, in write_pkg_info log.info("writing %s", filename) Message: 'writing %s' Arguments: ('glypy.egg-info/PKG-INFO',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 759, in overwrite_arg write_arg(cmd, basename, filename, True) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 767, in write_arg cmd.write_or_delete_file(argname, filename, value, force) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 272, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('dependency_links', 'glypy.egg-info/dependency_links.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 739, in write_requirements cmd.write_or_delete_file("requirements", filename, data.getvalue()) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 272, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('requirements', 'glypy.egg-info/requires.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 755, in write_toplevel_names cmd.write_file("top-level names", filename, '\n'.join(sorted(pkgs)) + '\n') File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('top-level names', 'glypy.egg-info/top_level.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 572, in run self.write_manifest() # it must exist so it'll get in the list File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 597, in write_manifest self.execute(write_file, (self.manifest, files), msg) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 339, in execute util.execute(func, args, msg, dry_run=self.dry_run) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/util.py", line 335, in execute log.info(msg) Message: "writing manifest file 'glypy.egg-info/SOURCES.txt'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 573, in run self.add_defaults() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 618, in add_defaults self.read_manifest() File "/usr/lib/python3.9/site-packages/setuptools/command/sdist.py", line 196, in read_manifest log.info("reading manifest file '%s'", self.manifest) Message: "reading manifest file '%s'" Arguments: ('glypy.egg-info/SOURCES.txt',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 575, in run self.read_template() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/command/sdist.py", line 354, in read_template log.info("reading manifest template '%s'", self.template) Message: "reading manifest template '%s'" Arguments: ('MANIFEST.in',) warning: no files found matching '*.ttl' under directory 'src/glypy/io/data' warning: no files found matching '*.hjson' under directory 'src/glypy/io/nomenclature/data' --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 576, in run self.add_license_files() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 631, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('LICENSE',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 576, in run self.add_license_files() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 631, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('NOTICE',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 581, in run self.write_manifest() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 597, in write_manifest self.execute(write_file, (self.manifest, files), msg) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 339, in execute util.execute(func, args, msg, dry_run=self.dry_run) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/util.py", line 335, in execute log.info(msg) Message: "writing manifest file 'glypy.egg-info/SOURCES.txt'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 103, in run log.info("creating '{}'".format(os.path.abspath(self.dist_info_dir))) Message: "creating '/builddir/build/BUILD/glypy-1.0.9/glypy-1.0.9.dist-info'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 108, in run bdist_wheel.egg2dist(egg_info_dir, self.dist_info_dir) File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 488, in egg2dist for license_path in self.license_paths: File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 432, in license_paths logger.info('adding license file "%s" (matched pattern "%s")', path, pattern) Message: 'adding license file "%s" (matched pattern "%s")' Arguments: ('LICENSE', 'LICEN[CS]E*') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 108, in run bdist_wheel.egg2dist(egg_info_dir, self.dist_info_dir) File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 488, in egg2dist for license_path in self.license_paths: File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 432, in license_paths logger.info('adding license file "%s" (matched pattern "%s")', path, pattern) Message: 'adding license file "%s" (matched pattern "%s")' Arguments: ('NOTICE', 'NOTICE*') Handling hjson from hook generated metadata: Requires-Dist Requirement not satisfied: hjson Handling six from hook generated metadata: Requires-Dist Requirement not satisfied: six Handling SPARQLWrapper ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: SPARQLWrapper ; extra == 'all' Handling rdflib ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: rdflib ; extra == 'all' Handling requests ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: requests ; extra == 'all' Handling matplotlib (>=2.2.0) ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: matplotlib (>=2.2.0) ; extra == 'all' Handling requests ; extra == 'glyspace' from hook generated metadata: Requires-Dist Ignoring alien requirement: requests ; extra == 'glyspace' Handling rdflib ; extra == 'glyspace' from hook generated metadata: Requires-Dist Ignoring alien requirement: rdflib ; extra == 'glyspace' Handling SPARQLWrapper ; extra == 'glyspace' from hook generated metadata: Requires-Dist Ignoring alien requirement: SPARQLWrapper ; extra == 'glyspace' Handling matplotlib (>=2.2.0) ; extra == 'plot' from hook generated metadata: Requires-Dist Ignoring alien requirement: matplotlib (>=2.2.0) ; extra == 'plot' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-glypy-1.0.9-1.el9.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '34dfe35f2b954ae899c205f3919a3a3c', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1685059200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.tuvYye + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf glypy-1.0.9 + /usr/bin/gzip -dc /builddir/build/SOURCES/glypy-1.0.9.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd glypy-1.0.9 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.eiL9iF + umask 022 + cd /builddir/build/BUILD + cd glypy-1.0.9 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(toml) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/glypy-1.0.9/pyproject-wheeldir Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 67.8.0) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.36.2) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 0.29.22) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.8.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.36.2) warning: no files found matching '*.ttl' under directory 'src/glypy/io/data' warning: no files found matching '*.hjson' under directory 'src/glypy/io/nomenclature/data' HOOK STDOUT: running egg_info HOOK STDOUT: writing src/glypy.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to src/glypy.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to src/glypy.egg-info/requires.txt HOOK STDOUT: writing top-level names to src/glypy.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'src/glypy.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: adding license file 'NOTICE' HOOK STDOUT: writing manifest file 'src/glypy.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.36.2) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 985, in run_command log.info("running %s", command) Message: 'running %s' Arguments: ('dist_info',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 302, in run self.mkpath(self.egg_info) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 342, in mkpath dir_util.mkpath(name, mode, dry_run=self.dry_run) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dir_util.py", line 71, in mkpath log.info("creating %s", head) Message: 'creating %s' Arguments: ('glypy.egg-info',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 690, in write_pkg_info log.info("writing %s", filename) Message: 'writing %s' Arguments: ('glypy.egg-info/PKG-INFO',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 759, in overwrite_arg write_arg(cmd, basename, filename, True) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 767, in write_arg cmd.write_or_delete_file(argname, filename, value, force) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 272, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('dependency_links', 'glypy.egg-info/dependency_links.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 739, in write_requirements cmd.write_or_delete_file("requirements", filename, data.getvalue()) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 272, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('requirements', 'glypy.egg-info/requires.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 755, in write_toplevel_names cmd.write_file("top-level names", filename, '\n'.join(sorted(pkgs)) + '\n') File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('top-level names', 'glypy.egg-info/top_level.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 572, in run self.write_manifest() # it must exist so it'll get in the list File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 597, in write_manifest self.execute(write_file, (self.manifest, files), msg) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 339, in execute util.execute(func, args, msg, dry_run=self.dry_run) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/util.py", line 335, in execute log.info(msg) Message: "writing manifest file 'glypy.egg-info/SOURCES.txt'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 573, in run self.add_defaults() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 618, in add_defaults self.read_manifest() File "/usr/lib/python3.9/site-packages/setuptools/command/sdist.py", line 196, in read_manifest log.info("reading manifest file '%s'", self.manifest) Message: "reading manifest file '%s'" Arguments: ('glypy.egg-info/SOURCES.txt',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 575, in run self.read_template() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/command/sdist.py", line 354, in read_template log.info("reading manifest template '%s'", self.template) Message: "reading manifest template '%s'" Arguments: ('MANIFEST.in',) warning: no files found matching '*.ttl' under directory 'src/glypy/io/data' warning: no files found matching '*.hjson' under directory 'src/glypy/io/nomenclature/data' --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 576, in run self.add_license_files() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 631, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('LICENSE',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 576, in run self.add_license_files() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 631, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('NOTICE',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 581, in run self.write_manifest() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 597, in write_manifest self.execute(write_file, (self.manifest, files), msg) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 339, in execute util.execute(func, args, msg, dry_run=self.dry_run) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/util.py", line 335, in execute log.info(msg) Message: "writing manifest file 'glypy.egg-info/SOURCES.txt'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 103, in run log.info("creating '{}'".format(os.path.abspath(self.dist_info_dir))) Message: "creating '/builddir/build/BUILD/glypy-1.0.9/glypy-1.0.9.dist-info'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 108, in run bdist_wheel.egg2dist(egg_info_dir, self.dist_info_dir) File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 488, in egg2dist for license_path in self.license_paths: File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 432, in license_paths logger.info('adding license file "%s" (matched pattern "%s")', path, pattern) Message: 'adding license file "%s" (matched pattern "%s")' Arguments: ('LICENSE', 'LICEN[CS]E*') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 108, in run bdist_wheel.egg2dist(egg_info_dir, self.dist_info_dir) File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 488, in egg2dist for license_path in self.license_paths: File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 432, in license_paths logger.info('adding license file "%s" (matched pattern "%s")', path, pattern) Message: 'adding license file "%s" (matched pattern "%s")' Arguments: ('NOTICE', 'NOTICE*') Handling hjson from hook generated metadata: Requires-Dist Requirement satisfied: hjson (installed: hjson 3.0.2) Handling six from hook generated metadata: Requires-Dist Requirement satisfied: six (installed: six 1.16.0) Handling requests ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: requests ; extra == 'all' Handling matplotlib (>=2.2.0) ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: matplotlib (>=2.2.0) ; extra == 'all' Handling rdflib ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: rdflib ; extra == 'all' Handling SPARQLWrapper ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: SPARQLWrapper ; extra == 'all' Handling requests ; extra == 'glyspace' from hook generated metadata: Requires-Dist Ignoring alien requirement: requests ; extra == 'glyspace' Handling rdflib ; extra == 'glyspace' from hook generated metadata: Requires-Dist Ignoring alien requirement: rdflib ; extra == 'glyspace' Handling SPARQLWrapper ; extra == 'glyspace' from hook generated metadata: Requires-Dist Ignoring alien requirement: SPARQLWrapper ; extra == 'glyspace' Handling matplotlib (>=2.2.0) ; extra == 'plot' from hook generated metadata: Requires-Dist Ignoring alien requirement: matplotlib (>=2.2.0) ; extra == 'plot' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-glypy-1.0.9-1.el9.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '75a976e2dc3346efbd184a717842b1c9', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1685113782.483278/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2y4v287n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-glypy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1685059200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.dOFrIJ + umask 022 + cd /builddir/build/BUILD + cd glypy-1.0.9 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(toml) if python3-devel < 3.11)' + rm -rfv glypy-1.0.9.dist-info/ removed 'glypy-1.0.9.dist-info/LICENSE' removed 'glypy-1.0.9.dist-info/NOTICE' removed 'glypy-1.0.9.dist-info/METADATA' removed 'glypy-1.0.9.dist-info/top_level.txt' removed directory 'glypy-1.0.9.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/glypy-1.0.9/pyproject-wheeldir Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 67.8.0) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.36.2) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 0.29.22) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.8.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.36.2) warning: no files found matching '*.ttl' under directory 'src/glypy/io/data' warning: no files found matching '*.hjson' under directory 'src/glypy/io/nomenclature/data' HOOK STDOUT: running egg_info HOOK STDOUT: writing src/glypy.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to src/glypy.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to src/glypy.egg-info/requires.txt HOOK STDOUT: writing top-level names to src/glypy.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'src/glypy.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: adding license file 'NOTICE' HOOK STDOUT: writing manifest file 'src/glypy.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.36.2) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 985, in run_command log.info("running %s", command) Message: 'running %s' Arguments: ('dist_info',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 690, in write_pkg_info log.info("writing %s", filename) Message: 'writing %s' Arguments: ('glypy.egg-info/PKG-INFO',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 759, in overwrite_arg write_arg(cmd, basename, filename, True) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 767, in write_arg cmd.write_or_delete_file(argname, filename, value, force) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 272, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('dependency_links', 'glypy.egg-info/dependency_links.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 739, in write_requirements cmd.write_or_delete_file("requirements", filename, data.getvalue()) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 272, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('requirements', 'glypy.egg-info/requires.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 755, in write_toplevel_names cmd.write_file("top-level names", filename, '\n'.join(sorted(pkgs)) + '\n') File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('top-level names', 'glypy.egg-info/top_level.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 573, in run self.add_defaults() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 618, in add_defaults self.read_manifest() File "/usr/lib/python3.9/site-packages/setuptools/command/sdist.py", line 196, in read_manifest log.info("reading manifest file '%s'", self.manifest) Message: "reading manifest file '%s'" Arguments: ('glypy.egg-info/SOURCES.txt',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 575, in run self.read_template() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/command/sdist.py", line 354, in read_template log.info("reading manifest template '%s'", self.template) Message: "reading manifest template '%s'" Arguments: ('MANIFEST.in',) warning: no files found matching '*.ttl' under directory 'src/glypy/io/data' warning: no files found matching '*.hjson' under directory 'src/glypy/io/nomenclature/data' --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 576, in run self.add_license_files() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 631, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('LICENSE',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 576, in run self.add_license_files() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 631, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('NOTICE',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 581, in run self.write_manifest() File "/usr/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 597, in write_manifest self.execute(write_file, (self.manifest, files), msg) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 339, in execute util.execute(func, args, msg, dry_run=self.dry_run) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/util.py", line 335, in execute log.info(msg) Message: "writing manifest file 'glypy.egg-info/SOURCES.txt'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 103, in run log.info("creating '{}'".format(os.path.abspath(self.dist_info_dir))) Message: "creating '/builddir/build/BUILD/glypy-1.0.9/glypy-1.0.9.dist-info'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 108, in run bdist_wheel.egg2dist(egg_info_dir, self.dist_info_dir) File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 488, in egg2dist for license_path in self.license_paths: File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 432, in license_paths logger.info('adding license file "%s" (matched pattern "%s")', path, pattern) Message: 'adding license file "%s" (matched pattern "%s")' Arguments: ('LICENSE', 'LICEN[CS]E*') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.9/logging/__init__.py", line 1086, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 487, in run_setup super(_BuildMetaLegacyBackend, File "/usr/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 153, in File "", line 116, in run_setup File "/usr/lib/python3.9/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.9/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 108, in run bdist_wheel.egg2dist(egg_info_dir, self.dist_info_dir) File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 488, in egg2dist for license_path in self.license_paths: File "/usr/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 432, in license_paths logger.info('adding license file "%s" (matched pattern "%s")', path, pattern) Message: 'adding license file "%s" (matched pattern "%s")' Arguments: ('NOTICE', 'NOTICE*') Handling hjson from hook generated metadata: Requires-Dist Requirement satisfied: hjson (installed: hjson 3.0.2) Handling six from hook generated metadata: Requires-Dist Requirement satisfied: six (installed: six 1.16.0) Handling SPARQLWrapper ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: SPARQLWrapper ; extra == 'all' Handling rdflib ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: rdflib ; extra == 'all' Handling requests ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: requests ; extra == 'all' Handling matplotlib (>=2.2.0) ; extra == 'all' from hook generated metadata: Requires-Dist Ignoring alien requirement: matplotlib (>=2.2.0) ; extra == 'all' Handling requests ; extra == 'glyspace' from hook generated metadata: Requires-Dist Ignoring alien requirement: requests ; extra == 'glyspace' Handling rdflib ; extra == 'glyspace' from hook generated metadata: Requires-Dist Ignoring alien requirement: rdflib ; extra == 'glyspace' Handling SPARQLWrapper ; extra == 'glyspace' from hook generated metadata: Requires-Dist Ignoring alien requirement: SPARQLWrapper ; extra == 'glyspace' Handling matplotlib (>=2.2.0) ; extra == 'plot' from hook generated metadata: Requires-Dist Ignoring alien requirement: matplotlib (>=2.2.0) ; extra == 'plot' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bBMxlW + umask 022 + cd /builddir/build/BUILD + cd glypy-1.0.9 + mkdir -p /builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/glypy-1.0.9/pyproject-wheeldir Processing /builddir/build/BUILD/glypy-1.0.9 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir/pip-modern-metadata-kxu6xoc_/glypy.egg-info writing /builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir/pip-modern-metadata-kxu6xoc_/glypy.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir/pip-modern-metadata-kxu6xoc_/glypy.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir/pip-modern-metadata-kxu6xoc_/glypy.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir/pip-modern-metadata-kxu6xoc_/glypy.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir/pip-modern-metadata-kxu6xoc_/glypy.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir/pip-modern-metadata-kxu6xoc_/glypy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.ttl' under directory 'src/glypy/io/data' warning: no files found matching '*.hjson' under directory 'src/glypy/io/nomenclature/data' adding license file 'LICENSE' adding license file 'NOTICE' writing manifest file '/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir/pip-modern-metadata-kxu6xoc_/glypy.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir/pip-modern-metadata-kxu6xoc_/glypy-1.0.9.dist-info' adding license file "LICENSE" (matched pattern "LICEN[CS]E*") adding license file "NOTICE" (matched pattern "NOTICE*") Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: glypy Building wheel for glypy (pyproject.toml): started Running command Building wheel for glypy (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-39 creating build/lib.linux-x86_64-cpython-39/glypy copying src/glypy/version.py -> build/lib.linux-x86_64-cpython-39/glypy copying src/glypy/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy creating build/lib.linux-x86_64-cpython-39/glypy/utils copying src/glypy/utils/multimap.py -> build/lib.linux-x86_64-cpython-39/glypy/utils copying src/glypy/utils/lazy.py -> build/lib.linux-x86_64-cpython-39/glypy/utils copying src/glypy/utils/enum.py -> build/lib.linux-x86_64-cpython-39/glypy/utils copying src/glypy/utils/compat.py -> build/lib.linux-x86_64-cpython-39/glypy/utils copying src/glypy/utils/base.py -> build/lib.linux-x86_64-cpython-39/glypy/utils copying src/glypy/utils/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/utils creating build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/substituent.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/stereochemistry.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/named_structures.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/monosaccharide.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/modification.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/link.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/glycan_composition.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/glycan.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/fragment.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/crossring_fragments.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/constants.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/base.py -> build/lib.linux-x86_64-cpython-39/glypy/structure copying src/glypy/structure/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/structure creating build/lib.linux-x86_64-cpython-39/glypy/plot copying src/glypy/plot/topological_layout.py -> build/lib.linux-x86_64-cpython-39/glypy/plot copying src/glypy/plot/symbolic_nomenclature.py -> build/lib.linux-x86_64-cpython-39/glypy/plot copying src/glypy/plot/snfg_symbols.py -> build/lib.linux-x86_64-cpython-39/glypy/plot copying src/glypy/plot/iupac_symbols.py -> build/lib.linux-x86_64-cpython-39/glypy/plot copying src/glypy/plot/geometry.py -> build/lib.linux-x86_64-cpython-39/glypy/plot copying src/glypy/plot/fragment_annotation.py -> build/lib.linux-x86_64-cpython-39/glypy/plot copying src/glypy/plot/draw_tree.py -> build/lib.linux-x86_64-cpython-39/glypy/plot copying src/glypy/plot/common.py -> build/lib.linux-x86_64-cpython-39/glypy/plot copying src/glypy/plot/cfg_symbols.py -> build/lib.linux-x86_64-cpython-39/glypy/plot copying src/glypy/plot/buchheim.py -> build/lib.linux-x86_64-cpython-39/glypy/plot copying src/glypy/plot/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/plot creating build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/tree_builder_utils.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/monosaccharidedb.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/linear_code.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/iupac.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/gws.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/gnome.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/glyspace.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/glyconnect.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/glycomedb.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/glycoct_xml.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/glycoct.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/format_constants_map.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/file_utils.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/cfg.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/byonic.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/_glycordf.py -> build/lib.linux-x86_64-cpython-39/glypy/io copying src/glypy/io/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/io creating build/lib.linux-x86_64-cpython-39/glypy/enzyme copying src/glypy/enzyme/pathways.py -> build/lib.linux-x86_64-cpython-39/glypy/enzyme copying src/glypy/enzyme/graph.py -> build/lib.linux-x86_64-cpython-39/glypy/enzyme copying src/glypy/enzyme/glycome.py -> build/lib.linux-x86_64-cpython-39/glypy/enzyme copying src/glypy/enzyme/ec.py -> build/lib.linux-x86_64-cpython-39/glypy/enzyme copying src/glypy/enzyme/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/enzyme creating build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/structure_composition.py -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/molecular_graph.py -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/mass_dict.py -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/composition_transform.py -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/composition.py -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/base.py -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/atomic_data.py -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/composition creating build/lib.linux-x86_64-cpython-39/glypy/algorithms copying src/glypy/algorithms/storage.py -> build/lib.linux-x86_64-cpython-39/glypy/algorithms copying src/glypy/algorithms/similarity.py -> build/lib.linux-x86_64-cpython-39/glypy/algorithms copying src/glypy/algorithms/database.py -> build/lib.linux-x86_64-cpython-39/glypy/algorithms copying src/glypy/algorithms/canonicalize.py -> build/lib.linux-x86_64-cpython-39/glypy/algorithms copying src/glypy/algorithms/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/algorithms creating build/lib.linux-x86_64-cpython-39/glypy/_c copying src/glypy/_c/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/_c creating build/lib.linux-x86_64-cpython-39/glypy/io/wurcs copying src/glypy/io/wurcs/writer.py -> build/lib.linux-x86_64-cpython-39/glypy/io/wurcs copying src/glypy/io/wurcs/utils.py -> build/lib.linux-x86_64-cpython-39/glypy/io/wurcs copying src/glypy/io/wurcs/substituent_conversion.py -> build/lib.linux-x86_64-cpython-39/glypy/io/wurcs copying src/glypy/io/wurcs/parser.py -> build/lib.linux-x86_64-cpython-39/glypy/io/wurcs copying src/glypy/io/wurcs/node_type.py -> build/lib.linux-x86_64-cpython-39/glypy/io/wurcs copying src/glypy/io/wurcs/carbon_descriptors.py -> build/lib.linux-x86_64-cpython-39/glypy/io/wurcs copying src/glypy/io/wurcs/basetype_conversion.py -> build/lib.linux-x86_64-cpython-39/glypy/io/wurcs copying src/glypy/io/wurcs/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/io/wurcs creating build/lib.linux-x86_64-cpython-39/glypy/io/nomenclature copying src/glypy/io/nomenclature/synonyms.py -> build/lib.linux-x86_64-cpython-39/glypy/io/nomenclature copying src/glypy/io/nomenclature/identity.py -> build/lib.linux-x86_64-cpython-39/glypy/io/nomenclature copying src/glypy/io/nomenclature/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/io/nomenclature creating build/lib.linux-x86_64-cpython-39/glypy/algorithms/subtree_search copying src/glypy/algorithms/subtree_search/inclusion.py -> build/lib.linux-x86_64-cpython-39/glypy/algorithms/subtree_search copying src/glypy/algorithms/subtree_search/common_subgraph.py -> build/lib.linux-x86_64-cpython-39/glypy/algorithms/subtree_search copying src/glypy/algorithms/subtree_search/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/algorithms/subtree_search creating build/lib.linux-x86_64-cpython-39/glypy/_c/structure copying src/glypy/_c/structure/__init__.py -> build/lib.linux-x86_64-cpython-39/glypy/_c/structure running egg_info writing src/glypy.egg-info/PKG-INFO writing dependency_links to src/glypy.egg-info/dependency_links.txt writing requirements to src/glypy.egg-info/requires.txt writing top-level names to src/glypy.egg-info/top_level.txt reading manifest file 'src/glypy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.ttl' under directory 'src/glypy/io/data' warning: no files found matching '*.hjson' under directory 'src/glypy/io/nomenclature/data' adding license file 'LICENSE' adding license file 'NOTICE' writing manifest file 'src/glypy.egg-info/SOURCES.txt' /usr/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'glypy.io.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'glypy.io.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'glypy.io.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'glypy.io.data' to be distributed and are already explicitly excluding 'glypy.io.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'glypy.io.nomenclature.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'glypy.io.nomenclature.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'glypy.io.nomenclature.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'glypy.io.nomenclature.data' to be distributed and are already explicitly excluding 'glypy.io.nomenclature.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'glypy.structure.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'glypy.structure.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'glypy.structure.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'glypy.structure.data' to be distributed and are already explicitly excluding 'glypy.structure.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying src/glypy/utils/cenum.c -> build/lib.linux-x86_64-cpython-39/glypy/utils copying src/glypy/utils/cenum.pxd -> build/lib.linux-x86_64-cpython-39/glypy/utils copying src/glypy/utils/cenum.pyx -> build/lib.linux-x86_64-cpython-39/glypy/utils creating build/lib.linux-x86_64-cpython-39/glypy/structure/data copying src/glypy/structure/data/glycans.hjson -> build/lib.linux-x86_64-cpython-39/glypy/structure/data copying src/glypy/structure/data/monosaccharides.hjson -> build/lib.linux-x86_64-cpython-39/glypy/structure/data copying src/glypy/structure/data/motifs.hjson -> build/lib.linux-x86_64-cpython-39/glypy/structure/data creating build/lib.linux-x86_64-cpython-39/glypy/io/data copying src/glypy/io/data/enzyme.json -> build/lib.linux-x86_64-cpython-39/glypy/io/data copying src/glypy/io/data/glycan.owl -> build/lib.linux-x86_64-cpython-39/glypy/io/data copying src/glypy/composition/ccomposition.c -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/ccomposition.pxd -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/ccomposition.pyx -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/compat.h -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/composition/compat.pxd -> build/lib.linux-x86_64-cpython-39/glypy/composition copying src/glypy/_c/compat.h -> build/lib.linux-x86_64-cpython-39/glypy/_c copying src/glypy/_c/compat.pxd -> build/lib.linux-x86_64-cpython-39/glypy/_c copying src/glypy/_c/utils.c -> build/lib.linux-x86_64-cpython-39/glypy/_c copying src/glypy/_c/utils.pxd -> build/lib.linux-x86_64-cpython-39/glypy/_c copying src/glypy/_c/utils.pyx -> build/lib.linux-x86_64-cpython-39/glypy/_c creating build/lib.linux-x86_64-cpython-39/glypy/io/nomenclature/data copying src/glypy/io/nomenclature/data/monosaccharide_schematic.json -> build/lib.linux-x86_64-cpython-39/glypy/io/nomenclature/data copying src/glypy/io/nomenclature/data/monosaccharide_synonyms.json -> build/lib.linux-x86_64-cpython-39/glypy/io/nomenclature/data copying src/glypy/_c/structure/base.pxd -> build/lib.linux-x86_64-cpython-39/glypy/_c/structure copying src/glypy/_c/structure/base.pyx -> build/lib.linux-x86_64-cpython-39/glypy/_c/structure copying src/glypy/_c/structure/glycan_composition.c -> build/lib.linux-x86_64-cpython-39/glypy/_c/structure copying src/glypy/_c/structure/glycan_composition.pxd -> build/lib.linux-x86_64-cpython-39/glypy/_c/structure copying src/glypy/_c/structure/glycan_composition.pyx -> build/lib.linux-x86_64-cpython-39/glypy/_c/structure copying src/glypy/_c/structure/monosaccharide.pxd -> build/lib.linux-x86_64-cpython-39/glypy/_c/structure running build_ext building 'glypy.composition.ccomposition' extension creating build/temp.linux-x86_64-cpython-39 creating build/temp.linux-x86_64-cpython-39/src creating build/temp.linux-x86_64-cpython-39/src/glypy creating build/temp.linux-x86_64-cpython-39/src/glypy/composition gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Isrc/glypy/_c/ -I/usr/include/python3.9 -c src/glypy/composition/ccomposition.c -o build/temp.linux-x86_64-cpython-39/src/glypy/composition/ccomposition.o *************************************************************************** command 'gcc' failed: No such file or directory WARNING: The C extension could not be compiled, speedups are not enabled. Failure information, if any, is above. Retrying the build without the C extension now. *************************************************************************** running bdist_wheel running build running build_py creating build/lib creating build/lib/glypy copying src/glypy/version.py -> build/lib/glypy copying src/glypy/__init__.py -> build/lib/glypy creating build/lib/glypy/utils copying src/glypy/utils/multimap.py -> build/lib/glypy/utils copying src/glypy/utils/lazy.py -> build/lib/glypy/utils copying src/glypy/utils/enum.py -> build/lib/glypy/utils copying src/glypy/utils/compat.py -> build/lib/glypy/utils copying src/glypy/utils/base.py -> build/lib/glypy/utils copying src/glypy/utils/__init__.py -> build/lib/glypy/utils creating build/lib/glypy/structure copying src/glypy/structure/substituent.py -> build/lib/glypy/structure copying src/glypy/structure/stereochemistry.py -> build/lib/glypy/structure copying src/glypy/structure/named_structures.py -> build/lib/glypy/structure copying src/glypy/structure/monosaccharide.py -> build/lib/glypy/structure copying src/glypy/structure/modification.py -> build/lib/glypy/structure copying src/glypy/structure/link.py -> build/lib/glypy/structure copying src/glypy/structure/glycan_composition.py -> build/lib/glypy/structure copying src/glypy/structure/glycan.py -> build/lib/glypy/structure copying src/glypy/structure/fragment.py -> build/lib/glypy/structure copying src/glypy/structure/crossring_fragments.py -> build/lib/glypy/structure copying src/glypy/structure/constants.py -> build/lib/glypy/structure copying src/glypy/structure/base.py -> build/lib/glypy/structure copying src/glypy/structure/__init__.py -> build/lib/glypy/structure creating build/lib/glypy/plot copying src/glypy/plot/topological_layout.py -> build/lib/glypy/plot copying src/glypy/plot/symbolic_nomenclature.py -> build/lib/glypy/plot copying src/glypy/plot/snfg_symbols.py -> build/lib/glypy/plot copying src/glypy/plot/iupac_symbols.py -> build/lib/glypy/plot copying src/glypy/plot/geometry.py -> build/lib/glypy/plot copying src/glypy/plot/fragment_annotation.py -> build/lib/glypy/plot copying src/glypy/plot/draw_tree.py -> build/lib/glypy/plot copying src/glypy/plot/common.py -> build/lib/glypy/plot copying src/glypy/plot/cfg_symbols.py -> build/lib/glypy/plot copying src/glypy/plot/buchheim.py -> build/lib/glypy/plot copying src/glypy/plot/__init__.py -> build/lib/glypy/plot creating build/lib/glypy/io copying src/glypy/io/tree_builder_utils.py -> build/lib/glypy/io copying src/glypy/io/monosaccharidedb.py -> build/lib/glypy/io copying src/glypy/io/linear_code.py -> build/lib/glypy/io copying src/glypy/io/iupac.py -> build/lib/glypy/io copying src/glypy/io/gws.py -> build/lib/glypy/io copying src/glypy/io/gnome.py -> build/lib/glypy/io copying src/glypy/io/glyspace.py -> build/lib/glypy/io copying src/glypy/io/glyconnect.py -> build/lib/glypy/io copying src/glypy/io/glycomedb.py -> build/lib/glypy/io copying src/glypy/io/glycoct_xml.py -> build/lib/glypy/io copying src/glypy/io/glycoct.py -> build/lib/glypy/io copying src/glypy/io/format_constants_map.py -> build/lib/glypy/io copying src/glypy/io/file_utils.py -> build/lib/glypy/io copying src/glypy/io/cfg.py -> build/lib/glypy/io copying src/glypy/io/byonic.py -> build/lib/glypy/io copying src/glypy/io/_glycordf.py -> build/lib/glypy/io copying src/glypy/io/__init__.py -> build/lib/glypy/io creating build/lib/glypy/enzyme copying src/glypy/enzyme/pathways.py -> build/lib/glypy/enzyme copying src/glypy/enzyme/graph.py -> build/lib/glypy/enzyme copying src/glypy/enzyme/glycome.py -> build/lib/glypy/enzyme copying src/glypy/enzyme/ec.py -> build/lib/glypy/enzyme copying src/glypy/enzyme/__init__.py -> build/lib/glypy/enzyme creating build/lib/glypy/composition copying src/glypy/composition/structure_composition.py -> build/lib/glypy/composition copying src/glypy/composition/molecular_graph.py -> build/lib/glypy/composition copying src/glypy/composition/mass_dict.py -> build/lib/glypy/composition copying src/glypy/composition/composition_transform.py -> build/lib/glypy/composition copying src/glypy/composition/composition.py -> build/lib/glypy/composition copying src/glypy/composition/base.py -> build/lib/glypy/composition copying src/glypy/composition/atomic_data.py -> build/lib/glypy/composition copying src/glypy/composition/__init__.py -> build/lib/glypy/composition creating build/lib/glypy/algorithms copying src/glypy/algorithms/storage.py -> build/lib/glypy/algorithms copying src/glypy/algorithms/similarity.py -> build/lib/glypy/algorithms copying src/glypy/algorithms/database.py -> build/lib/glypy/algorithms copying src/glypy/algorithms/canonicalize.py -> build/lib/glypy/algorithms copying src/glypy/algorithms/__init__.py -> build/lib/glypy/algorithms creating build/lib/glypy/_c copying src/glypy/_c/__init__.py -> build/lib/glypy/_c creating build/lib/glypy/io/wurcs copying src/glypy/io/wurcs/writer.py -> build/lib/glypy/io/wurcs copying src/glypy/io/wurcs/utils.py -> build/lib/glypy/io/wurcs copying src/glypy/io/wurcs/substituent_conversion.py -> build/lib/glypy/io/wurcs copying src/glypy/io/wurcs/parser.py -> build/lib/glypy/io/wurcs copying src/glypy/io/wurcs/node_type.py -> build/lib/glypy/io/wurcs copying src/glypy/io/wurcs/carbon_descriptors.py -> build/lib/glypy/io/wurcs copying src/glypy/io/wurcs/basetype_conversion.py -> build/lib/glypy/io/wurcs copying src/glypy/io/wurcs/__init__.py -> build/lib/glypy/io/wurcs creating build/lib/glypy/io/nomenclature copying src/glypy/io/nomenclature/synonyms.py -> build/lib/glypy/io/nomenclature copying src/glypy/io/nomenclature/identity.py -> build/lib/glypy/io/nomenclature copying src/glypy/io/nomenclature/__init__.py -> build/lib/glypy/io/nomenclature creating build/lib/glypy/algorithms/subtree_search copying src/glypy/algorithms/subtree_search/inclusion.py -> build/lib/glypy/algorithms/subtree_search copying src/glypy/algorithms/subtree_search/common_subgraph.py -> build/lib/glypy/algorithms/subtree_search copying src/glypy/algorithms/subtree_search/__init__.py -> build/lib/glypy/algorithms/subtree_search creating build/lib/glypy/_c/structure copying src/glypy/_c/structure/__init__.py -> build/lib/glypy/_c/structure running egg_info writing src/glypy.egg-info/PKG-INFO writing dependency_links to src/glypy.egg-info/dependency_links.txt writing requirements to src/glypy.egg-info/requires.txt writing top-level names to src/glypy.egg-info/top_level.txt reading manifest file 'src/glypy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.ttl' under directory 'src/glypy/io/data' warning: no files found matching '*.hjson' under directory 'src/glypy/io/nomenclature/data' adding license file 'LICENSE' adding license file 'NOTICE' writing manifest file 'src/glypy.egg-info/SOURCES.txt' /usr/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'glypy.io.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'glypy.io.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'glypy.io.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'glypy.io.data' to be distributed and are already explicitly excluding 'glypy.io.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'glypy.io.nomenclature.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'glypy.io.nomenclature.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'glypy.io.nomenclature.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'glypy.io.nomenclature.data' to be distributed and are already explicitly excluding 'glypy.io.nomenclature.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'glypy.structure.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'glypy.structure.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'glypy.structure.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'glypy.structure.data' to be distributed and are already explicitly excluding 'glypy.structure.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying src/glypy/utils/cenum.c -> build/lib/glypy/utils copying src/glypy/utils/cenum.pxd -> build/lib/glypy/utils copying src/glypy/utils/cenum.pyx -> build/lib/glypy/utils creating build/lib/glypy/structure/data copying src/glypy/structure/data/glycans.hjson -> build/lib/glypy/structure/data copying src/glypy/structure/data/monosaccharides.hjson -> build/lib/glypy/structure/data copying src/glypy/structure/data/motifs.hjson -> build/lib/glypy/structure/data creating build/lib/glypy/io/data copying src/glypy/io/data/enzyme.json -> build/lib/glypy/io/data copying src/glypy/io/data/glycan.owl -> build/lib/glypy/io/data copying src/glypy/composition/ccomposition.c -> build/lib/glypy/composition copying src/glypy/composition/ccomposition.pxd -> build/lib/glypy/composition copying src/glypy/composition/ccomposition.pyx -> build/lib/glypy/composition copying src/glypy/composition/compat.h -> build/lib/glypy/composition copying src/glypy/composition/compat.pxd -> build/lib/glypy/composition copying src/glypy/_c/compat.h -> build/lib/glypy/_c copying src/glypy/_c/compat.pxd -> build/lib/glypy/_c copying src/glypy/_c/utils.c -> build/lib/glypy/_c copying src/glypy/_c/utils.pxd -> build/lib/glypy/_c copying src/glypy/_c/utils.pyx -> build/lib/glypy/_c creating build/lib/glypy/io/nomenclature/data copying src/glypy/io/nomenclature/data/monosaccharide_schematic.json -> build/lib/glypy/io/nomenclature/data copying src/glypy/io/nomenclature/data/monosaccharide_synonyms.json -> build/lib/glypy/io/nomenclature/data copying src/glypy/_c/structure/base.pxd -> build/lib/glypy/_c/structure copying src/glypy/_c/structure/base.pyx -> build/lib/glypy/_c/structure copying src/glypy/_c/structure/glycan_composition.c -> build/lib/glypy/_c/structure copying src/glypy/_c/structure/glycan_composition.pxd -> build/lib/glypy/_c/structure copying src/glypy/_c/structure/glycan_composition.pyx -> build/lib/glypy/_c/structure copying src/glypy/_c/structure/monosaccharide.pxd -> build/lib/glypy/_c/structure installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/glypy creating build/bdist.linux-x86_64/wheel/glypy/_c copying build/lib/glypy/_c/utils.pyx -> build/bdist.linux-x86_64/wheel/glypy/_c copying build/lib/glypy/_c/utils.pxd -> build/bdist.linux-x86_64/wheel/glypy/_c copying build/lib/glypy/_c/utils.c -> build/bdist.linux-x86_64/wheel/glypy/_c copying build/lib/glypy/_c/compat.pxd -> build/bdist.linux-x86_64/wheel/glypy/_c copying build/lib/glypy/_c/compat.h -> build/bdist.linux-x86_64/wheel/glypy/_c creating build/bdist.linux-x86_64/wheel/glypy/_c/structure copying build/lib/glypy/_c/structure/monosaccharide.pxd -> build/bdist.linux-x86_64/wheel/glypy/_c/structure copying build/lib/glypy/_c/structure/glycan_composition.pyx -> build/bdist.linux-x86_64/wheel/glypy/_c/structure copying build/lib/glypy/_c/structure/glycan_composition.pxd -> build/bdist.linux-x86_64/wheel/glypy/_c/structure copying build/lib/glypy/_c/structure/glycan_composition.c -> build/bdist.linux-x86_64/wheel/glypy/_c/structure copying build/lib/glypy/_c/structure/base.pyx -> build/bdist.linux-x86_64/wheel/glypy/_c/structure copying build/lib/glypy/_c/structure/base.pxd -> build/bdist.linux-x86_64/wheel/glypy/_c/structure copying build/lib/glypy/_c/structure/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/_c/structure copying build/lib/glypy/_c/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/_c creating build/bdist.linux-x86_64/wheel/glypy/algorithms creating build/bdist.linux-x86_64/wheel/glypy/algorithms/subtree_search copying build/lib/glypy/algorithms/subtree_search/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/algorithms/subtree_search copying build/lib/glypy/algorithms/subtree_search/common_subgraph.py -> build/bdist.linux-x86_64/wheel/glypy/algorithms/subtree_search copying build/lib/glypy/algorithms/subtree_search/inclusion.py -> build/bdist.linux-x86_64/wheel/glypy/algorithms/subtree_search copying build/lib/glypy/algorithms/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/algorithms copying build/lib/glypy/algorithms/canonicalize.py -> build/bdist.linux-x86_64/wheel/glypy/algorithms copying build/lib/glypy/algorithms/database.py -> build/bdist.linux-x86_64/wheel/glypy/algorithms copying build/lib/glypy/algorithms/similarity.py -> build/bdist.linux-x86_64/wheel/glypy/algorithms copying build/lib/glypy/algorithms/storage.py -> build/bdist.linux-x86_64/wheel/glypy/algorithms creating build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/compat.pxd -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/compat.h -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/ccomposition.pyx -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/ccomposition.pxd -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/ccomposition.c -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/atomic_data.py -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/base.py -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/composition.py -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/composition_transform.py -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/mass_dict.py -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/molecular_graph.py -> build/bdist.linux-x86_64/wheel/glypy/composition copying build/lib/glypy/composition/structure_composition.py -> build/bdist.linux-x86_64/wheel/glypy/composition creating build/bdist.linux-x86_64/wheel/glypy/enzyme copying build/lib/glypy/enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/enzyme copying build/lib/glypy/enzyme/ec.py -> build/bdist.linux-x86_64/wheel/glypy/enzyme copying build/lib/glypy/enzyme/glycome.py -> build/bdist.linux-x86_64/wheel/glypy/enzyme copying build/lib/glypy/enzyme/graph.py -> build/bdist.linux-x86_64/wheel/glypy/enzyme copying build/lib/glypy/enzyme/pathways.py -> build/bdist.linux-x86_64/wheel/glypy/enzyme creating build/bdist.linux-x86_64/wheel/glypy/io creating build/bdist.linux-x86_64/wheel/glypy/io/data copying build/lib/glypy/io/data/glycan.owl -> build/bdist.linux-x86_64/wheel/glypy/io/data copying build/lib/glypy/io/data/enzyme.json -> build/bdist.linux-x86_64/wheel/glypy/io/data creating build/bdist.linux-x86_64/wheel/glypy/io/nomenclature creating build/bdist.linux-x86_64/wheel/glypy/io/nomenclature/data copying build/lib/glypy/io/nomenclature/data/monosaccharide_synonyms.json -> build/bdist.linux-x86_64/wheel/glypy/io/nomenclature/data copying build/lib/glypy/io/nomenclature/data/monosaccharide_schematic.json -> build/bdist.linux-x86_64/wheel/glypy/io/nomenclature/data copying build/lib/glypy/io/nomenclature/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/io/nomenclature copying build/lib/glypy/io/nomenclature/identity.py -> build/bdist.linux-x86_64/wheel/glypy/io/nomenclature copying build/lib/glypy/io/nomenclature/synonyms.py -> build/bdist.linux-x86_64/wheel/glypy/io/nomenclature creating build/bdist.linux-x86_64/wheel/glypy/io/wurcs copying build/lib/glypy/io/wurcs/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/io/wurcs copying build/lib/glypy/io/wurcs/basetype_conversion.py -> build/bdist.linux-x86_64/wheel/glypy/io/wurcs copying build/lib/glypy/io/wurcs/carbon_descriptors.py -> build/bdist.linux-x86_64/wheel/glypy/io/wurcs copying build/lib/glypy/io/wurcs/node_type.py -> build/bdist.linux-x86_64/wheel/glypy/io/wurcs copying build/lib/glypy/io/wurcs/parser.py -> build/bdist.linux-x86_64/wheel/glypy/io/wurcs copying build/lib/glypy/io/wurcs/substituent_conversion.py -> build/bdist.linux-x86_64/wheel/glypy/io/wurcs copying build/lib/glypy/io/wurcs/utils.py -> build/bdist.linux-x86_64/wheel/glypy/io/wurcs copying build/lib/glypy/io/wurcs/writer.py -> build/bdist.linux-x86_64/wheel/glypy/io/wurcs copying build/lib/glypy/io/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/_glycordf.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/byonic.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/cfg.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/file_utils.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/format_constants_map.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/glycoct.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/glycoct_xml.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/glycomedb.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/glyconnect.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/glyspace.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/gnome.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/gws.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/iupac.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/linear_code.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/monosaccharidedb.py -> build/bdist.linux-x86_64/wheel/glypy/io copying build/lib/glypy/io/tree_builder_utils.py -> build/bdist.linux-x86_64/wheel/glypy/io creating build/bdist.linux-x86_64/wheel/glypy/plot copying build/lib/glypy/plot/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/plot copying build/lib/glypy/plot/buchheim.py -> build/bdist.linux-x86_64/wheel/glypy/plot copying build/lib/glypy/plot/cfg_symbols.py -> build/bdist.linux-x86_64/wheel/glypy/plot copying build/lib/glypy/plot/common.py -> build/bdist.linux-x86_64/wheel/glypy/plot copying build/lib/glypy/plot/draw_tree.py -> build/bdist.linux-x86_64/wheel/glypy/plot copying build/lib/glypy/plot/fragment_annotation.py -> build/bdist.linux-x86_64/wheel/glypy/plot copying build/lib/glypy/plot/geometry.py -> build/bdist.linux-x86_64/wheel/glypy/plot copying build/lib/glypy/plot/iupac_symbols.py -> build/bdist.linux-x86_64/wheel/glypy/plot copying build/lib/glypy/plot/snfg_symbols.py -> build/bdist.linux-x86_64/wheel/glypy/plot copying build/lib/glypy/plot/symbolic_nomenclature.py -> build/bdist.linux-x86_64/wheel/glypy/plot copying build/lib/glypy/plot/topological_layout.py -> build/bdist.linux-x86_64/wheel/glypy/plot creating build/bdist.linux-x86_64/wheel/glypy/structure creating build/bdist.linux-x86_64/wheel/glypy/structure/data copying build/lib/glypy/structure/data/motifs.hjson -> build/bdist.linux-x86_64/wheel/glypy/structure/data copying build/lib/glypy/structure/data/monosaccharides.hjson -> build/bdist.linux-x86_64/wheel/glypy/structure/data copying build/lib/glypy/structure/data/glycans.hjson -> build/bdist.linux-x86_64/wheel/glypy/structure/data copying build/lib/glypy/structure/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/base.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/constants.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/crossring_fragments.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/fragment.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/glycan.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/glycan_composition.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/link.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/modification.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/monosaccharide.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/named_structures.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/stereochemistry.py -> build/bdist.linux-x86_64/wheel/glypy/structure copying build/lib/glypy/structure/substituent.py -> build/bdist.linux-x86_64/wheel/glypy/structure creating build/bdist.linux-x86_64/wheel/glypy/utils copying build/lib/glypy/utils/cenum.pyx -> build/bdist.linux-x86_64/wheel/glypy/utils copying build/lib/glypy/utils/cenum.pxd -> build/bdist.linux-x86_64/wheel/glypy/utils copying build/lib/glypy/utils/cenum.c -> build/bdist.linux-x86_64/wheel/glypy/utils copying build/lib/glypy/utils/__init__.py -> build/bdist.linux-x86_64/wheel/glypy/utils copying build/lib/glypy/utils/base.py -> build/bdist.linux-x86_64/wheel/glypy/utils copying build/lib/glypy/utils/compat.py -> build/bdist.linux-x86_64/wheel/glypy/utils copying build/lib/glypy/utils/enum.py -> build/bdist.linux-x86_64/wheel/glypy/utils copying build/lib/glypy/utils/lazy.py -> build/bdist.linux-x86_64/wheel/glypy/utils copying build/lib/glypy/utils/multimap.py -> build/bdist.linux-x86_64/wheel/glypy/utils copying build/lib/glypy/__init__.py -> build/bdist.linux-x86_64/wheel/glypy copying build/lib/glypy/version.py -> build/bdist.linux-x86_64/wheel/glypy running install_egg_info Copying src/glypy.egg-info to build/bdist.linux-x86_64/wheel/glypy-1.0.9-py3.9.egg-info running install_scripts adding license file "LICENSE" (matched pattern "LICEN[CS]E*") adding license file "NOTICE" (matched pattern "NOTICE*") creating build/bdist.linux-x86_64/wheel/glypy-1.0.9.dist-info/WHEEL creating '/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir/pip-wheel-jsqnvtzu/.tmp-0_3izlbm/glypy-1.0.9-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'glypy/__init__.py' adding 'glypy/version.py' adding 'glypy/_c/__init__.py' adding 'glypy/_c/compat.h' adding 'glypy/_c/compat.pxd' adding 'glypy/_c/utils.c' adding 'glypy/_c/utils.pxd' adding 'glypy/_c/utils.pyx' adding 'glypy/_c/structure/__init__.py' adding 'glypy/_c/structure/base.pxd' adding 'glypy/_c/structure/base.pyx' adding 'glypy/_c/structure/glycan_composition.c' adding 'glypy/_c/structure/glycan_composition.pxd' adding 'glypy/_c/structure/glycan_composition.pyx' adding 'glypy/_c/structure/monosaccharide.pxd' adding 'glypy/algorithms/__init__.py' adding 'glypy/algorithms/canonicalize.py' adding 'glypy/algorithms/database.py' adding 'glypy/algorithms/similarity.py' adding 'glypy/algorithms/storage.py' adding 'glypy/algorithms/subtree_search/__init__.py' adding 'glypy/algorithms/subtree_search/common_subgraph.py' adding 'glypy/algorithms/subtree_search/inclusion.py' adding 'glypy/composition/__init__.py' adding 'glypy/composition/atomic_data.py' adding 'glypy/composition/base.py' adding 'glypy/composition/ccomposition.c' adding 'glypy/composition/ccomposition.pxd' adding 'glypy/composition/ccomposition.pyx' adding 'glypy/composition/compat.h' adding 'glypy/composition/compat.pxd' adding 'glypy/composition/composition.py' adding 'glypy/composition/composition_transform.py' adding 'glypy/composition/mass_dict.py' adding 'glypy/composition/molecular_graph.py' adding 'glypy/composition/structure_composition.py' adding 'glypy/enzyme/__init__.py' adding 'glypy/enzyme/ec.py' adding 'glypy/enzyme/glycome.py' adding 'glypy/enzyme/graph.py' adding 'glypy/enzyme/pathways.py' adding 'glypy/io/__init__.py' adding 'glypy/io/_glycordf.py' adding 'glypy/io/byonic.py' adding 'glypy/io/cfg.py' adding 'glypy/io/file_utils.py' adding 'glypy/io/format_constants_map.py' adding 'glypy/io/glycoct.py' adding 'glypy/io/glycoct_xml.py' adding 'glypy/io/glycomedb.py' adding 'glypy/io/glyconnect.py' adding 'glypy/io/glyspace.py' adding 'glypy/io/gnome.py' adding 'glypy/io/gws.py' adding 'glypy/io/iupac.py' adding 'glypy/io/linear_code.py' adding 'glypy/io/monosaccharidedb.py' adding 'glypy/io/tree_builder_utils.py' adding 'glypy/io/data/enzyme.json' adding 'glypy/io/data/glycan.owl' adding 'glypy/io/nomenclature/__init__.py' adding 'glypy/io/nomenclature/identity.py' adding 'glypy/io/nomenclature/synonyms.py' adding 'glypy/io/nomenclature/data/monosaccharide_schematic.json' adding 'glypy/io/nomenclature/data/monosaccharide_synonyms.json' adding 'glypy/io/wurcs/__init__.py' adding 'glypy/io/wurcs/basetype_conversion.py' adding 'glypy/io/wurcs/carbon_descriptors.py' adding 'glypy/io/wurcs/node_type.py' adding 'glypy/io/wurcs/parser.py' adding 'glypy/io/wurcs/substituent_conversion.py' adding 'glypy/io/wurcs/utils.py' adding 'glypy/io/wurcs/writer.py' adding 'glypy/plot/__init__.py' adding 'glypy/plot/buchheim.py' adding 'glypy/plot/cfg_symbols.py' adding 'glypy/plot/common.py' adding 'glypy/plot/draw_tree.py' adding 'glypy/plot/fragment_annotation.py' adding 'glypy/plot/geometry.py' adding 'glypy/plot/iupac_symbols.py' adding 'glypy/plot/snfg_symbols.py' adding 'glypy/plot/symbolic_nomenclature.py' adding 'glypy/plot/topological_layout.py' adding 'glypy/structure/__init__.py' adding 'glypy/structure/base.py' adding 'glypy/structure/constants.py' adding 'glypy/structure/crossring_fragments.py' adding 'glypy/structure/fragment.py' adding 'glypy/structure/glycan.py' adding 'glypy/structure/glycan_composition.py' adding 'glypy/structure/link.py' adding 'glypy/structure/modification.py' adding 'glypy/structure/monosaccharide.py' adding 'glypy/structure/named_structures.py' adding 'glypy/structure/stereochemistry.py' adding 'glypy/structure/substituent.py' adding 'glypy/structure/data/glycans.hjson' adding 'glypy/structure/data/monosaccharides.hjson' adding 'glypy/structure/data/motifs.hjson' adding 'glypy/utils/__init__.py' adding 'glypy/utils/base.py' adding 'glypy/utils/cenum.c' adding 'glypy/utils/cenum.pxd' adding 'glypy/utils/cenum.pyx' adding 'glypy/utils/compat.py' adding 'glypy/utils/enum.py' adding 'glypy/utils/lazy.py' adding 'glypy/utils/multimap.py' adding 'glypy-1.0.9.dist-info/LICENSE' adding 'glypy-1.0.9.dist-info/METADATA' adding 'glypy-1.0.9.dist-info/NOTICE' adding 'glypy-1.0.9.dist-info/WHEEL' adding 'glypy-1.0.9.dist-info/top_level.txt' adding 'glypy-1.0.9.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel *************************************************************************** WARNING: The C extension could not be compiled, speedups are not enabled. Plain-Python build succeeded. *************************************************************************** Building wheel for glypy (pyproject.toml): finished with status 'done' Created wheel for glypy: filename=glypy-1.0.9-py3-none-any.whl size=769267 sha256=375386b9186aa7ff29fb99abd08113011dd7f633cdb289a837c5792d7f52755a Stored in directory: /builddir/.cache/pip/wheels/37/b1/f0/7cc2735342fd4d6c20db82525e2e8a715f0b6c148467a4ecc0 Successfully built glypy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.sVJN4h + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64 ++ dirname /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64 + cd glypy-1.0.9 ++ ls /builddir/build/BUILD/glypy-1.0.9/pyproject-wheeldir/glypy-1.0.9-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=glypy==1.0.9 + TMPDIR=/builddir/build/BUILD/glypy-1.0.9/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/glypy-1.0.9/pyproject-wheeldir glypy==1.0.9 Using pip 22.0.4 from /usr/lib/python3.9/site-packages/pip (python 3.9) Looking in links: /builddir/build/BUILD/glypy-1.0.9/pyproject-wheeldir Processing ./pyproject-wheeldir/glypy-1.0.9-py3-none-any.whl Installing collected packages: glypy Successfully installed glypy-1.0.9 + '[' -d /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-glypy-1.0.9-1.el9.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib/python3.9/site-packages ']' + site_dirs+=("/usr/lib/python3.9/site-packages") + '[' /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib64/python3.9/site-packages '!=' /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib/python3.9/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib64/python3.9/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.9/site-packages/glypy-1.0.9.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib/python3.9/site-packages/glypy-1.0.9.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64 --record /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib/python3.9/site-packages/glypy-1.0.9.dist-info/RECORD --output /builddir/build/BUILD/python-glypy-1.0.9-1.el9.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib/python3.9/site-packages/glypy-1.0.9.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib/python3.9/site-packages/glypy-1.0.9.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib/python3.9/site-packages/glypy-1.0.9.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib/python3.9/site-packages/glypy-1.0.9.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-glypy-1.0.9-1.el9.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-glypy-1.0.9-1.el9.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-glypy-1.0.9-1.el9.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64 --sitelib /usr/lib/python3.9/site-packages --sitearch /usr/lib64/python3.9/site-packages --python-version 3.9 --pyproject-record /builddir/build/BUILD/python-glypy-1.0.9-1.el9.x86_64-pyproject-record --prefix /usr '*' +auto + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 1.0.9-1.el9 --unique-debug-suffix -1.0.9-1.el9.x86_64 --unique-debug-src-base python-glypy-1.0.9-1.el9.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/glypy-1.0.9 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib/python3.9 using python3.9 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.maqnJj + umask 022 + cd /builddir/build/BUILD + cd glypy-1.0.9 + '[' '!' -f /builddir/build/BUILD/python-glypy-1.0.9-1.el9.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib/python3.9/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64/usr/lib/python3.9/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -s /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-glypy-1.0.9-1.el9.x86_64-pyproject-modules -t Check import: glypy + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-glypy-1.0.9-1.el9.noarch Provides: python-glypy = 1.0.9-1.el9 python3-glypy = 1.0.9-1.el9 python3.9-glypy = 1.0.9-1.el9 python3.9dist(glypy) = 1.0.9 python3dist(glypy) = 1.0.9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.9 python3.9dist(hjson) python3.9dist(six) Obsoletes: python39-glypy < 1.0.9-1.el9 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64 Wrote: /builddir/build/SRPMS/python-glypy-1.0.9-1.el9.src.rpm Wrote: /builddir/build/RPMS/python3-glypy-1.0.9-1.el9.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ZlxkCY + umask 022 + cd /builddir/build/BUILD + cd glypy-1.0.9 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-glypy-1.0.9-1.el9.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0