Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c152' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8516371-epel-9-x86_64 --chroot epel-9-x86_64 Version: 1.2 PID: 8543 Logging PID: 8544 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8516371, 'buildroot_pkgs': [], 'chroot': 'epel-9-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '83954b227ddfb0e988a1bc2865cb5c314cc21036', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-biopython', 'package_version': '1.85-1', 'project_dirname': 'PyPI', 'project_name': 'PyPI', 'project_owner': '@copr', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@copr/PyPI/epel-9-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': '@copr/PyPI--ksurma', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'ksurma', 'tags': [], 'task_id': '8516371-epel-9-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython /var/lib/copr-rpmbuild/workspace/workdir-831wf5tz/python-biopython --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@copr/PyPI/python-biopython', '/var/lib/copr-rpmbuild/workspace/workdir-831wf5tz/python-biopython', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-831wf5tz/python-biopython'... Running: git checkout 83954b227ddfb0e988a1bc2865cb5c314cc21036 -- cmd: ['git', 'checkout', '83954b227ddfb0e988a1bc2865cb5c314cc21036', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-831wf5tz/python-biopython rc: 0 stdout: stderr: Note: switching to '83954b227ddfb0e988a1bc2865cb5c314cc21036'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 83954b2 automatic import of python-biopython Running: dist-git-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-831wf5tz/python-biopython rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading biopython-1.85.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o biopython-1.85.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@copr/PyPI/python-biopython/biopython-1.85.tar.gz/md5/3b91ce61ec22da40b59e5aa2d13885ea/biopython-1.85.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 18.9M 100 18.9M 0 0 2341k 0 0:00:08 0:00:08 --:--:-- 529k INFO: Reading stdout from command: md5sum biopython-1.85.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-831wf5tz/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-831wf5tz/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736957274.987317 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-831wf5tz/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-831wf5tz/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736957274.987317 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-831wf5tz/python-biopython/python-biopython.spec) Config(rhel+epel-9-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1736957274.987317/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.access.redhat.com/ubi9/ubi INFO: Pulling image: registry.access.redhat.com/ubi9/ubi INFO: Tagging container image as mock-bootstrap-100f5e54-6c81-4803-a205-8833f03bfe6b INFO: Checking that 4d9d3585895106bd08273429983b91f401339b921cf03c6ecfaaffc8a40b2ad5 image matches host's architecture INFO: Copy content of container 4d9d3585895106bd08273429983b91f401339b921cf03c6ecfaaffc8a40b2ad5 to /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1736957274.987317/root INFO: mounting 4d9d3585895106bd08273429983b91f401339b921cf03c6ecfaaffc8a40b2ad5 with podman image mount INFO: image 4d9d3585895106bd08273429983b91f401339b921cf03c6ecfaaffc8a40b2ad5 as /var/lib/containers/storage/overlay/32d9dcb9aab040e8dfa689cfbde7b19251e50c3a03a5645f585bb23dc8627050/merged INFO: umounting image 4d9d3585895106bd08273429983b91f401339b921cf03c6ecfaaffc8a40b2ad5 (/var/lib/containers/storage/overlay/32d9dcb9aab040e8dfa689cfbde7b19251e50c3a03a5645f585bb23dc8627050/merged) with podman image umount INFO: Removing image mock-bootstrap-100f5e54-6c81-4803-a205-8833f03bfe6b INFO: Package manager dnf4 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-1736957274.987317/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf4 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.16.1.3-34.el9.x86_64 python3-dnf-4.14.0-17.el9.noarch python3-dnf-plugins-core-4.3.0-16.el9.noarch yum-4.14.0-17.el9.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 36 MB/s | 63 MB 00:01 Red Hat Enterprise Linux - BaseOS 29 MB/s | 41 MB 00:01 Red Hat Enterprise Linux - AppStream 32 MB/s | 48 MB 00:01 Red Hat Enterprise Linux - CodeReady Linux Buil 12 MB/s | 11 MB 00:00 Extra Packages for Enterprise Linux 9 - x86_64 1.4 MB/s | 23 MB 00:16 Last metadata expiration check: 0:00:04 ago on Wed Jan 15 16:09:38 2025. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: bash x86_64 5.1.8-9.el9 baseos 1.7 M bzip2 x86_64 1.0.8-8.el9 baseos 60 k coreutils x86_64 8.32-36.el9 baseos 1.2 M cpio x86_64 2.13-16.el9 baseos 279 k diffutils x86_64 3.7-12.el9 baseos 402 k epel-rpm-macros noarch 9-14.el9 epel 15 k findutils x86_64 1:4.8.0-7.el9 baseos 550 k gawk x86_64 5.1.0-6.el9 baseos 1.0 M glibc-minimal-langpack x86_64 2.34-125.el9_5.1 baseos 23 k grep x86_64 3.6-5.el9 baseos 273 k gzip x86_64 1.12-1.el9 baseos 167 k info x86_64 6.7-15.el9 baseos 228 k patch x86_64 2.7.6-16.el9 appstream 130 k redhat-release x86_64 9.5-0.6.el9 baseos 45 k redhat-rpm-config noarch 208-1.el9 appstream 75 k rpm-build x86_64 4.16.1.3-34.el9 appstream 71 k sed x86_64 4.8-9.el9 baseos 309 k tar x86_64 2:1.34-7.el9 baseos 889 k unzip x86_64 6.0-57.el9 baseos 186 k util-linux x86_64 2.37.4-20.el9 baseos 2.3 M which x86_64 2.21-29.el9 baseos 45 k xz x86_64 5.2.5-8.el9_0 baseos 230 k Installing dependencies: alternatives x86_64 1.24-1.el9_5.1 baseos 42 k ansible-srpm-macros noarch 1-16.el9 epel 21 k audit-libs x86_64 3.1.5-1.el9 baseos 124 k basesystem noarch 11-13.el9 baseos 8.0 k binutils x86_64 2.35.2-54.el9 baseos 4.6 M binutils-gold x86_64 2.35.2-54.el9 baseos 735 k bzip2-libs x86_64 1.0.8-8.el9 baseos 42 k ca-certificates noarch 2024.2.69_v8.0.303-91.4.el9_4 baseos 1.0 M coreutils-common x86_64 8.32-36.el9 baseos 2.0 M cracklib x86_64 2.9.6-27.el9 baseos 99 k cracklib-dicts x86_64 2.9.6-27.el9 baseos 3.6 M crypto-policies noarch 20240828-2.git626aa59.el9_5 baseos 90 k curl x86_64 7.76.1-31.el9 baseos 297 k cyrus-sasl-lib x86_64 2.1.27-21.el9 baseos 774 k debugedit x86_64 5.0-5.el9 appstream 81 k dwz x86_64 0.14-3.el9 appstream 130 k ed x86_64 1.14.2-12.el9 baseos 78 k efi-srpm-macros noarch 6-2.el9_0 appstream 24 k elfutils x86_64 0.191-4.el9 baseos 566 k elfutils-debuginfod-client x86_64 0.191-4.el9 baseos 39 k elfutils-default-yama-scope noarch 0.191-4.el9 baseos 12 k elfutils-libelf x86_64 0.191-4.el9 baseos 210 k elfutils-libs x86_64 0.191-4.el9 baseos 262 k file x86_64 5.39-16.el9 baseos 52 k file-libs x86_64 5.39-16.el9 baseos 593 k filesystem x86_64 3.16-5.el9 baseos 4.8 M fonts-srpm-macros noarch 1:2.0.5-7.el9.1 appstream 29 k forge-srpm-macros noarch 0.4.0-1.el9 epel 19 k fpc-srpm-macros noarch 1.3-7.el9 epel 7.5 k gdb-minimal x86_64 14.2-3.el9 appstream 4.2 M gdbm-libs x86_64 1:1.23-1.el9 baseos 59 k ghc-srpm-macros noarch 1.5.0-6.el9 appstream 9.0 k glibc x86_64 2.34-125.el9_5.1 baseos 2.0 M glibc-common x86_64 2.34-125.el9_5.1 baseos 308 k glibc-gconv-extra x86_64 2.34-125.el9_5.1 baseos 1.7 M gmp x86_64 1:6.2.0-13.el9 baseos 319 k go-srpm-macros noarch 3.6.0-3.el9 appstream 28 k go-srpm-macros-epel noarch 3.6.0.1-1.el9 epel 26 k groff-base x86_64 1.22.4-10.el9 baseos 1.1 M kernel-srpm-macros noarch 1.0-13.el9 appstream 17 k keyutils-libs x86_64 1.6.3-1.el9 baseos 34 k krb5-libs x86_64 1.21.1-4.el9_5 baseos 771 k libacl x86_64 2.3.1-4.el9 baseos 24 k libarchive x86_64 3.5.3-4.el9 baseos 392 k libattr x86_64 2.5.1-3.el9 baseos 20 k libblkid x86_64 2.37.4-20.el9 baseos 109 k libbrotli x86_64 1.0.9-7.el9_5 baseos 316 k libcap x86_64 2.48-9.el9_2 baseos 74 k libcap-ng x86_64 0.8.2-7.el9 baseos 36 k libcom_err x86_64 1.46.5-5.el9 baseos 28 k libcurl x86_64 7.76.1-31.el9 baseos 286 k libdb x86_64 5.3.28-54.el9 baseos 737 k libeconf x86_64 0.4.1-4.el9 baseos 30 k libevent x86_64 2.1.12-8.el9_4 baseos 266 k libfdisk x86_64 2.37.4-20.el9 baseos 155 k libffi x86_64 3.4.2-8.el9 baseos 40 k libgcc x86_64 11.5.0-2.el9 baseos 91 k libgcrypt x86_64 1.10.0-11.el9 baseos 510 k libgomp x86_64 11.5.0-2.el9 baseos 266 k libgpg-error x86_64 1.42-5.el9 baseos 220 k libidn2 x86_64 2.3.0-7.el9 baseos 105 k libmount x86_64 2.37.4-20.el9 baseos 136 k libnghttp2 x86_64 1.43.0-6.el9 baseos 75 k libpkgconf x86_64 1.7.3-10.el9 baseos 37 k libpsl x86_64 0.21.1-5.el9 baseos 66 k libpwquality x86_64 1.4.4-8.el9 baseos 123 k libselinux x86_64 3.6-1.el9 baseos 88 k libsemanage x86_64 3.6-2.1.el9_5 baseos 120 k libsepol x86_64 3.6-1.el9 baseos 331 k libsigsegv x86_64 2.13-4.el9 baseos 30 k libsmartcols x86_64 2.37.4-20.el9 baseos 64 k libssh x86_64 0.10.4-13.el9 baseos 220 k libssh-config noarch 0.10.4-13.el9 baseos 11 k libstdc++ x86_64 11.5.0-2.el9 baseos 742 k libtasn1 x86_64 4.16.0-8.el9_1 baseos 77 k libunistring x86_64 0.9.10-15.el9 baseos 499 k libutempter x86_64 1.2.1-6.el9 baseos 30 k libuuid x86_64 2.37.4-20.el9 baseos 30 k libverto x86_64 0.3.2-3.el9 baseos 24 k libxcrypt x86_64 4.4.18-3.el9 baseos 120 k libxml2 x86_64 2.9.13-6.el9_4 baseos 752 k libzstd x86_64 1.5.1-2.el9 baseos 332 k lua-libs x86_64 5.4.4-4.el9 baseos 132 k lua-srpm-macros noarch 1-6.el9 appstream 10 k lz4-libs x86_64 1.9.3-5.el9 baseos 69 k mpfr x86_64 4.1.0-7.el9 baseos 329 k ncurses x86_64 6.2-10.20210508.el9 baseos 410 k ncurses-base noarch 6.2-10.20210508.el9 baseos 99 k ncurses-libs x86_64 6.2-10.20210508.el9 baseos 332 k ocaml-srpm-macros noarch 6-6.el9 appstream 9.1 k openblas-srpm-macros noarch 2-11.el9 appstream 8.6 k openldap x86_64 2.6.6-3.el9 baseos 286 k openssl x86_64 1:3.2.2-6.el9_5 baseos 1.4 M openssl-fips-provider x86_64 3.0.7-6.el9_5 baseos 9.4 k openssl-fips-provider-so x86_64 3.0.7-6.el9_5 baseos 577 k openssl-libs x86_64 1:3.2.2-6.el9_5 baseos 2.1 M p11-kit x86_64 0.25.3-3.el9_5 baseos 536 k p11-kit-trust x86_64 0.25.3-3.el9_5 baseos 144 k pam x86_64 1.5.1-22.el9_5 baseos 632 k pcre x86_64 8.44-4.el9 baseos 200 k pcre2 x86_64 10.40-6.el9 baseos 236 k pcre2-syntax noarch 10.40-6.el9 baseos 144 k perl-AutoLoader noarch 5.74-481.el9 appstream 21 k perl-B x86_64 1.80-481.el9 appstream 184 k perl-Carp noarch 1.50-460.el9 appstream 31 k perl-Class-Struct noarch 0.66-481.el9 appstream 22 k perl-Data-Dumper x86_64 2.174-462.el9 appstream 59 k perl-Digest noarch 1.19-4.el9 appstream 29 k perl-Digest-MD5 x86_64 2.58-4.el9 appstream 39 k perl-Encode x86_64 4:3.08-462.el9 appstream 1.7 M perl-Errno x86_64 1.30-481.el9 appstream 15 k perl-Exporter noarch 5.74-461.el9 appstream 34 k perl-Fcntl x86_64 1.13-481.el9 appstream 22 k perl-File-Basename noarch 2.85-481.el9 appstream 17 k perl-File-Path noarch 2.18-4.el9 appstream 38 k perl-File-Temp noarch 1:0.231.100-4.el9 appstream 63 k perl-File-stat noarch 1.09-481.el9 appstream 17 k perl-FileHandle noarch 2.03-481.el9 appstream 16 k perl-Getopt-Long noarch 1:2.52-4.el9 appstream 64 k perl-Getopt-Std noarch 1.12-481.el9 appstream 16 k perl-HTTP-Tiny noarch 0.076-462.el9 appstream 57 k perl-IO x86_64 1.43-481.el9 appstream 92 k perl-IO-Socket-IP noarch 0.41-5.el9 appstream 45 k perl-IO-Socket-SSL noarch 2.073-2.el9 appstream 221 k perl-IPC-Open3 noarch 1.21-481.el9 appstream 24 k perl-MIME-Base64 x86_64 3.16-4.el9 appstream 34 k perl-Mozilla-CA noarch 20200520-6.el9 appstream 14 k perl-Net-SSLeay x86_64 1.94-1.el9 appstream 418 k perl-POSIX x86_64 1.94-481.el9 appstream 98 k perl-PathTools x86_64 3.78-461.el9 appstream 92 k perl-Pod-Escapes noarch 1:1.07-460.el9 appstream 22 k perl-Pod-Perldoc noarch 3.28.01-461.el9 appstream 92 k perl-Pod-Simple noarch 1:3.42-4.el9 appstream 229 k perl-Pod-Usage noarch 4:2.01-4.el9 appstream 43 k perl-Scalar-List-Utils x86_64 4:1.56-462.el9 appstream 75 k perl-SelectSaver noarch 1.02-481.el9 appstream 12 k perl-Socket x86_64 4:2.031-4.el9 appstream 58 k perl-Storable x86_64 1:3.21-460.el9 appstream 98 k perl-Symbol noarch 1.08-481.el9 appstream 14 k perl-Term-ANSIColor noarch 5.01-461.el9 appstream 51 k perl-Term-Cap noarch 1.17-460.el9 appstream 24 k perl-Text-ParseWords noarch 3.30-460.el9 appstream 18 k perl-Text-Tabs+Wrap noarch 2013.0523-460.el9 appstream 25 k perl-Time-Local noarch 2:1.300-7.el9 appstream 37 k perl-URI noarch 5.09-3.el9 appstream 125 k perl-base noarch 2.27-481.el9 appstream 16 k perl-constant noarch 1.33-461.el9 appstream 25 k perl-if noarch 0.60.800-481.el9 appstream 14 k perl-interpreter x86_64 4:5.32.1-481.el9 appstream 73 k perl-libnet noarch 3.13-4.el9 appstream 134 k perl-libs x86_64 4:5.32.1-481.el9 appstream 2.2 M perl-mro x86_64 1.23-481.el9 appstream 29 k perl-overload noarch 1.31-481.el9 appstream 46 k perl-overloading noarch 0.02-481.el9 appstream 13 k perl-parent noarch 1:0.238-460.el9 appstream 16 k perl-podlators noarch 1:4.14-460.el9 appstream 118 k perl-srpm-macros noarch 1-41.el9 appstream 9.4 k perl-subs noarch 1.03-481.el9 appstream 12 k perl-vars noarch 1.05-481.el9 appstream 13 k pkgconf x86_64 1.7.3-10.el9 baseos 45 k pkgconf-m4 noarch 1.7.3-10.el9 baseos 16 k pkgconf-pkg-config x86_64 1.7.3-10.el9 baseos 12 k popt x86_64 1.18-8.el9 baseos 69 k publicsuffix-list-dafsa noarch 20210518-3.el9 baseos 59 k pyproject-srpm-macros noarch 1.12.0-1.el9 appstream 14 k python-srpm-macros noarch 3.9-54.el9 appstream 18 k qt5-srpm-macros noarch 5.15.9-1.el9 appstream 9.1 k qt6-srpm-macros noarch 6.6.2-1.el9 epel 8.7 k readline x86_64 8.1-4.el9 baseos 215 k rpm x86_64 4.16.1.3-34.el9 baseos 541 k rpm-build-libs x86_64 4.16.1.3-34.el9 baseos 90 k rpm-libs x86_64 4.16.1.3-34.el9 baseos 311 k rpmautospec-rpm-macros noarch 0.7.3-1.el9 epel 10 k rust-srpm-macros noarch 17-4.el9 appstream 11 k rust-srpm-macros-epel noarch 26.3-1.el9 epel 10 k setup noarch 2.13.7-10.el9 baseos 150 k shadow-utils x86_64 2:4.9-10.el9_5 baseos 1.2 M sqlite-libs x86_64 3.34.1-7.el9_3 baseos 622 k systemd-libs x86_64 252-46.el9_5.2 baseos 684 k tzdata noarch 2024b-2.el9 baseos 841 k util-linux-core x86_64 2.37.4-20.el9 baseos 468 k xz-libs x86_64 5.2.5-8.el9_0 baseos 94 k zip x86_64 3.0-35.el9 baseos 270 k zlib x86_64 1.2.11-40.el9 baseos 93 k zstd x86_64 1.5.1-2.el9 baseos 552 k Transaction Summary ================================================================================ Install 207 Packages Total download size: 69 M Installed size: 219 M Downloading Packages: (1/207): bzip2-libs-1.0.8-8.el9.x86_64.rpm 231 kB/s | 42 kB 00:00 (2/207): basesystem-11-13.el9.noarch.rpm 42 kB/s | 8.0 kB 00:00 (3/207): bzip2-1.0.8-8.el9.x86_64.rpm 213 kB/s | 60 kB 00:00 (4/207): cracklib-2.9.6-27.el9.x86_64.rpm 367 kB/s | 99 kB 00:00 (5/207): ed-1.14.2-12.el9.x86_64.rpm 294 kB/s | 78 kB 00:00 (6/207): grep-3.6-5.el9.x86_64.rpm 2.5 MB/s | 273 kB 00:00 (7/207): cpio-2.13-16.el9.x86_64.rpm 631 kB/s | 279 kB 00:00 (8/207): info-6.7-15.el9.x86_64.rpm 2.8 MB/s | 228 kB 00:00 (9/207): libattr-2.5.1-3.el9.x86_64.rpm 223 kB/s | 20 kB 00:00 (10/207): libcap-ng-0.8.2-7.el9.x86_64.rpm 333 kB/s | 36 kB 00:00 (11/207): groff-base-1.22.4-10.el9.x86_64.rpm 4.2 MB/s | 1.1 MB 00:00 (12/207): libgpg-error-1.42-5.el9.x86_64.rpm 1.8 MB/s | 220 kB 00:00 (13/207): libpwquality-1.4.4-8.el9.x86_64.rpm 983 kB/s | 123 kB 00:00 (14/207): libsigsegv-2.13-4.el9.x86_64.rpm 409 kB/s | 30 kB 00:00 (15/207): libidn2-2.3.0-7.el9.x86_64.rpm 305 kB/s | 105 kB 00:00 (16/207): libpsl-0.21.1-5.el9.x86_64.rpm 221 kB/s | 66 kB 00:00 (17/207): libunistring-0.9.10-15.el9.x86_64.rpm 2.7 MB/s | 499 kB 00:00 (18/207): libutempter-1.2.1-6.el9.x86_64.rpm 210 kB/s | 30 kB 00:00 (19/207): libverto-0.3.2-3.el9.x86_64.rpm 178 kB/s | 24 kB 00:00 (20/207): lz4-libs-1.9.3-5.el9.x86_64.rpm 589 kB/s | 69 kB 00:00 (21/207): libxcrypt-4.4.18-3.el9.x86_64.rpm 794 kB/s | 120 kB 00:00 (22/207): libzstd-1.5.1-2.el9.x86_64.rpm 2.0 MB/s | 332 kB 00:00 (23/207): mpfr-4.1.0-7.el9.x86_64.rpm 3.2 MB/s | 329 kB 00:00 (24/207): popt-1.18-8.el9.x86_64.rpm 714 kB/s | 69 kB 00:00 (25/207): publicsuffix-list-dafsa-20210518-3.el 821 kB/s | 59 kB 00:00 (26/207): readline-8.1-4.el9.x86_64.rpm 1.8 MB/s | 215 kB 00:00 (27/207): sed-4.8-9.el9.x86_64.rpm 2.1 MB/s | 309 kB 00:00 (28/207): cracklib-dicts-2.9.6-27.el9.x86_64.rp 19 MB/s | 3.6 MB 00:00 (29/207): gawk-5.1.0-6.el9.x86_64.rpm 8.6 MB/s | 1.0 MB 00:00 (30/207): xz-5.2.5-8.el9_0.x86_64.rpm 2.8 MB/s | 230 kB 00:00 (31/207): diffutils-3.7-12.el9.x86_64.rpm 2.3 MB/s | 402 kB 00:00 (32/207): xz-libs-5.2.5-8.el9_0.x86_64.rpm 1.3 MB/s | 94 kB 00:00 (33/207): zstd-1.5.1-2.el9.x86_64.rpm 7.0 MB/s | 552 kB 00:00 (34/207): cyrus-sasl-lib-2.1.27-21.el9.x86_64.r 4.3 MB/s | 774 kB 00:00 (35/207): gzip-1.12-1.el9.x86_64.rpm 1.2 MB/s | 167 kB 00:00 (36/207): libtasn1-4.16.0-8.el9_1.x86_64.rpm 628 kB/s | 77 kB 00:00 (37/207): libcap-2.48-9.el9_2.x86_64.rpm 1.0 MB/s | 74 kB 00:00 (38/207): libarchive-3.5.3-4.el9.x86_64.rpm 3.9 MB/s | 392 kB 00:00 (39/207): keyutils-libs-1.6.3-1.el9.x86_64.rpm 234 kB/s | 34 kB 00:00 (40/207): libpkgconf-1.7.3-10.el9.x86_64.rpm 446 kB/s | 37 kB 00:00 (41/207): pkgconf-1.7.3-10.el9.x86_64.rpm 267 kB/s | 45 kB 00:00 (42/207): pkgconf-pkg-config-1.7.3-10.el9.x86_6 120 kB/s | 12 kB 00:00 (43/207): pkgconf-m4-1.7.3-10.el9.noarch.rpm 65 kB/s | 16 kB 00:00 (44/207): gmp-6.2.0-13.el9.x86_64.rpm 2.8 MB/s | 319 kB 00:00 (45/207): lua-libs-5.4.4-4.el9.x86_64.rpm 1.5 MB/s | 132 kB 00:00 (46/207): ncurses-6.2-10.20210508.el9.x86_64.rp 5.4 MB/s | 410 kB 00:00 (47/207): libffi-3.4.2-8.el9.x86_64.rpm 173 kB/s | 40 kB 00:00 (48/207): zip-3.0-35.el9.x86_64.rpm 783 kB/s | 270 kB 00:00 (49/207): ncurses-base-6.2-10.20210508.el9.noar 888 kB/s | 99 kB 00:00 (50/207): ncurses-libs-6.2-10.20210508.el9.x86_ 3.8 MB/s | 332 kB 00:00 (51/207): zlib-1.2.11-40.el9.x86_64.rpm 928 kB/s | 93 kB 00:00 (52/207): bash-5.1.8-9.el9.x86_64.rpm 17 MB/s | 1.7 MB 00:00 (53/207): file-5.39-16.el9.x86_64.rpm 664 kB/s | 52 kB 00:00 (54/207): libacl-2.3.1-4.el9.x86_64.rpm 205 kB/s | 24 kB 00:00 (55/207): file-libs-5.39-16.el9.x86_64.rpm 3.0 MB/s | 593 kB 00:00 (56/207): which-2.21-29.el9.x86_64.rpm 108 kB/s | 45 kB 00:00 (57/207): libselinux-3.6-1.el9.x86_64.rpm 850 kB/s | 88 kB 00:00 (58/207): setup-2.13.7-10.el9.noarch.rpm 2.0 MB/s | 150 kB 00:00 (59/207): libsepol-3.6-1.el9.x86_64.rpm 2.1 MB/s | 331 kB 00:00 (60/207): sqlite-libs-3.34.1-7.el9_3.x86_64.rpm 3.4 MB/s | 622 kB 00:00 (61/207): openldap-2.6.6-3.el9.x86_64.rpm 826 kB/s | 286 kB 00:00 (62/207): libcom_err-1.46.5-5.el9.x86_64.rpm 407 kB/s | 28 kB 00:00 (63/207): libssh-0.10.4-13.el9.x86_64.rpm 1.9 MB/s | 220 kB 00:00 (64/207): libssh-config-0.10.4-13.el9.noarch.rp 94 kB/s | 11 kB 00:00 (65/207): libevent-2.1.12-8.el9_4.x86_64.rpm 1.0 MB/s | 266 kB 00:00 (66/207): ca-certificates-2024.2.69_v8.0.303-91 1.8 MB/s | 1.0 MB 00:00 (67/207): libxml2-2.9.13-6.el9_4.x86_64.rpm 4.3 MB/s | 752 kB 00:00 (68/207): audit-libs-3.1.5-1.el9.x86_64.rpm 831 kB/s | 124 kB 00:00 (69/207): alternatives-1.24-1.el9_5.1.x86_64.rp 161 kB/s | 42 kB 00:00 (70/207): coreutils-8.32-36.el9.x86_64.rpm 13 MB/s | 1.2 MB 00:00 (71/207): coreutils-common-8.32-36.el9.x86_64.r 13 MB/s | 2.0 MB 00:00 (72/207): binutils-2.35.2-54.el9.x86_64.rpm 13 MB/s | 4.6 MB 00:00 (73/207): crypto-policies-20240828-2.git626aa59 1.1 MB/s | 90 kB 00:00 (74/207): curl-7.76.1-31.el9.x86_64.rpm 3.3 MB/s | 297 kB 00:00 (75/207): binutils-gold-2.35.2-54.el9.x86_64.rp 1.8 MB/s | 735 kB 00:00 (76/207): elfutils-0.191-4.el9.x86_64.rpm 4.0 MB/s | 566 kB 00:00 (77/207): elfutils-default-yama-scope-0.191-4.e 79 kB/s | 12 kB 00:00 (78/207): elfutils-libelf-0.191-4.el9.x86_64.rp 2.5 MB/s | 210 kB 00:00 (79/207): elfutils-libs-0.191-4.el9.x86_64.rpm 3.0 MB/s | 262 kB 00:00 (80/207): findutils-4.8.0-7.el9.x86_64.rpm 3.7 MB/s | 550 kB 00:00 (81/207): elfutils-debuginfod-client-0.191-4.el 89 kB/s | 39 kB 00:00 (82/207): filesystem-3.16-5.el9.x86_64.rpm 20 MB/s | 4.8 MB 00:00 (83/207): gdbm-libs-1.23-1.el9.x86_64.rpm 514 kB/s | 59 kB 00:00 (84/207): glibc-2.34-125.el9_5.1.x86_64.rpm 9.8 MB/s | 2.0 MB 00:00 (85/207): glibc-gconv-extra-2.34-125.el9_5.1.x8 6.9 MB/s | 1.7 MB 00:00 (86/207): glibc-minimal-langpack-2.34-125.el9_5 94 kB/s | 23 kB 00:00 (87/207): glibc-common-2.34-125.el9_5.1.x86_64. 701 kB/s | 308 kB 00:00 (88/207): libblkid-2.37.4-20.el9.x86_64.rpm 726 kB/s | 109 kB 00:00 (89/207): libcurl-7.76.1-31.el9.x86_64.rpm 2.8 MB/s | 286 kB 00:00 (90/207): libeconf-0.4.1-4.el9.x86_64.rpm 242 kB/s | 30 kB 00:00 (91/207): libdb-5.3.28-54.el9.x86_64.rpm 4.3 MB/s | 737 kB 00:00 (92/207): libfdisk-2.37.4-20.el9.x86_64.rpm 796 kB/s | 155 kB 00:00 (93/207): libgcrypt-1.10.0-11.el9.x86_64.rpm 3.4 MB/s | 510 kB 00:00 (94/207): libgomp-11.5.0-2.el9.x86_64.rpm 3.2 MB/s | 266 kB 00:00 (95/207): libgcc-11.5.0-2.el9.x86_64.rpm 375 kB/s | 91 kB 00:00 (96/207): libmount-2.37.4-20.el9.x86_64.rpm 1.4 MB/s | 136 kB 00:00 (97/207): libnghttp2-1.43.0-6.el9.x86_64.rpm 1.1 MB/s | 75 kB 00:00 (98/207): libsmartcols-2.37.4-20.el9.x86_64.rpm 954 kB/s | 64 kB 00:00 (99/207): libuuid-2.37.4-20.el9.x86_64.rpm 423 kB/s | 30 kB 00:00 (100/207): libstdc++-11.5.0-2.el9.x86_64.rpm 4.1 MB/s | 742 kB 00:00 (101/207): openssl-fips-provider-3.0.7-6.el9_5. 109 kB/s | 9.4 kB 00:00 (102/207): openssl-3.2.2-6.el9_5.x86_64.rpm 8.7 MB/s | 1.4 MB 00:00 (103/207): openssl-fips-provider-so-3.0.7-6.el9 7.9 MB/s | 577 kB 00:00 (104/207): pcre-8.44-4.el9.x86_64.rpm 1.5 MB/s | 200 kB 00:00 (105/207): openssl-libs-3.2.2-6.el9_5.x86_64.rp 14 MB/s | 2.1 MB 00:00 (106/207): pcre2-10.40-6.el9.x86_64.rpm 2.1 MB/s | 236 kB 00:00 (107/207): pcre2-syntax-10.40-6.el9.noarch.rpm 2.1 MB/s | 144 kB 00:00 (108/207): redhat-release-9.5-0.6.el9.x86_64.rp 674 kB/s | 45 kB 00:00 (109/207): rpm-4.16.1.3-34.el9.x86_64.rpm 7.4 MB/s | 541 kB 00:00 (110/207): rpm-libs-4.16.1.3-34.el9.x86_64.rpm 4.4 MB/s | 311 kB 00:00 (111/207): systemd-libs-252-46.el9_5.2.x86_64.r 6.3 MB/s | 684 kB 00:00 (112/207): rpm-build-libs-4.16.1.3-34.el9.x86_6 651 kB/s | 90 kB 00:00 (113/207): tar-1.34-7.el9.x86_64.rpm 11 MB/s | 889 kB 00:00 (114/207): tzdata-2024b-2.el9.noarch.rpm 10 MB/s | 841 kB 00:00 (115/207): unzip-6.0-57.el9.x86_64.rpm 1.7 MB/s | 186 kB 00:00 (116/207): util-linux-core-2.37.4-20.el9.x86_64 5.9 MB/s | 468 kB 00:00 (117/207): util-linux-2.37.4-20.el9.x86_64.rpm 12 MB/s | 2.3 MB 00:00 (118/207): krb5-libs-1.21.1-4.el9_5.x86_64.rpm 6.3 MB/s | 771 kB 00:00 (119/207): libbrotli-1.0.9-7.el9_5.x86_64.rpm 3.7 MB/s | 316 kB 00:00 (120/207): p11-kit-0.25.3-3.el9_5.x86_64.rpm 4.6 MB/s | 536 kB 00:00 (121/207): shadow-utils-4.9-10.el9_5.x86_64.rpm 12 MB/s | 1.2 MB 00:00 (122/207): libsemanage-3.6-2.1.el9_5.x86_64.rpm 1.7 MB/s | 120 kB 00:00 (123/207): pam-1.5.1-22.el9_5.x86_64.rpm 1.6 MB/s | 632 kB 00:00 (124/207): p11-kit-trust-0.25.3-3.el9_5.x86_64. 629 kB/s | 144 kB 00:00 (125/207): lua-srpm-macros-1-6.el9.noarch.rpm 124 kB/s | 10 kB 00:00 (126/207): ghc-srpm-macros-1.5.0-6.el9.noarch.r 50 kB/s | 9.0 kB 00:00 (127/207): perl-Data-Dumper-2.174-462.el9.x86_6 729 kB/s | 59 kB 00:00 (128/207): perl-Digest-MD5-2.58-4.el9.x86_64.rp 437 kB/s | 39 kB 00:00 (129/207): perl-Mozilla-CA-20200520-6.el9.noarc 151 kB/s | 14 kB 00:00 (130/207): perl-Pod-Simple-3.42-4.el9.noarch.rp 3.2 MB/s | 229 kB 00:00 (131/207): perl-Term-Cap-1.17-460.el9.noarch.rp 347 kB/s | 24 kB 00:00 (132/207): perl-Encode-3.08-462.el9.x86_64.rpm 9.5 MB/s | 1.7 MB 00:00 (133/207): perl-Time-Local-1.300-7.el9.noarch.r 337 kB/s | 37 kB 00:00 (134/207): rust-srpm-macros-17-4.el9.noarch.rpm 112 kB/s | 11 kB 00:00 (135/207): perl-Pod-Escapes-1.07-460.el9.noarch 191 kB/s | 22 kB 00:00 (136/207): perl-Storable-3.21-460.el9.x86_64.rp 657 kB/s | 98 kB 00:00 (137/207): dwz-0.14-3.el9.x86_64.rpm 1.1 MB/s | 130 kB 00:00 (138/207): perl-podlators-4.14-460.el9.noarch.r 663 kB/s | 118 kB 00:00 (139/207): perl-File-Temp-0.231.100-4.el9.noarc 904 kB/s | 63 kB 00:00 (140/207): perl-Exporter-5.74-461.el9.noarch.rp 282 kB/s | 34 kB 00:00 (141/207): perl-Getopt-Long-2.52-4.el9.noarch.r 950 kB/s | 64 kB 00:00 (142/207): perl-MIME-Base64-3.16-4.el9.x86_64.r 351 kB/s | 34 kB 00:00 (143/207): perl-parent-0.238-460.el9.noarch.rpm 236 kB/s | 16 kB 00:00 (144/207): perl-Text-Tabs+Wrap-2013.0523-460.el 315 kB/s | 25 kB 00:00 (145/207): efi-srpm-macros-6-2.el9_0.noarch.rpm 343 kB/s | 24 kB 00:00 (146/207): perl-srpm-macros-1-41.el9.noarch.rpm 110 kB/s | 9.4 kB 00:00 (147/207): openblas-srpm-macros-2-11.el9.noarch 94 kB/s | 8.6 kB 00:00 (148/207): perl-File-Path-2.18-4.el9.noarch.rpm 553 kB/s | 38 kB 00:00 (149/207): perl-Digest-1.19-4.el9.noarch.rpm 317 kB/s | 29 kB 00:00 (150/207): perl-Pod-Usage-2.01-4.el9.noarch.rpm 415 kB/s | 43 kB 00:00 (151/207): perl-IO-Socket-IP-0.41-5.el9.noarch. 255 kB/s | 45 kB 00:00 (152/207): perl-Socket-2.031-4.el9.x86_64.rpm 436 kB/s | 58 kB 00:00 (153/207): perl-Text-ParseWords-3.30-460.el9.no 267 kB/s | 18 kB 00:00 (154/207): perl-Term-ANSIColor-5.01-461.el9.noa 461 kB/s | 51 kB 00:00 (155/207): perl-URI-5.09-3.el9.noarch.rpm 1.2 MB/s | 125 kB 00:00 (156/207): perl-constant-1.33-461.el9.noarch.rp 373 kB/s | 25 kB 00:00 (157/207): fonts-srpm-macros-2.0.5-7.el9.1.noar 413 kB/s | 29 kB 00:00 (158/207): ocaml-srpm-macros-6-6.el9.noarch.rpm 107 kB/s | 9.1 kB 00:00 (159/207): patch-2.7.6-16.el9.x86_64.rpm 1.8 MB/s | 130 kB 00:00 (160/207): perl-Pod-Perldoc-3.28.01-461.el9.noa 916 kB/s | 92 kB 00:00 (161/207): perl-libnet-3.13-4.el9.noarch.rpm 1.6 MB/s | 134 kB 00:00 (162/207): perl-Carp-1.50-460.el9.noarch.rpm 334 kB/s | 31 kB 00:00 (163/207): perl-PathTools-3.78-461.el9.x86_64.r 984 kB/s | 92 kB 00:00 (164/207): kernel-srpm-macros-1.0-13.el9.noarch 175 kB/s | 17 kB 00:00 (165/207): qt5-srpm-macros-5.15.9-1.el9.noarch. 98 kB/s | 9.1 kB 00:00 (166/207): perl-SelectSaver-1.02-481.el9.noarch 134 kB/s | 12 kB 00:00 (167/207): perl-if-0.60.800-481.el9.noarch.rpm 187 kB/s | 14 kB 00:00 (168/207): perl-AutoLoader-5.74-481.el9.noarch. 107 kB/s | 21 kB 00:00 (169/207): perl-B-1.80-481.el9.x86_64.rpm 1.3 MB/s | 184 kB 00:00 (170/207): perl-Class-Struct-0.66-481.el9.noarc 183 kB/s | 22 kB 00:00 (171/207): perl-Errno-1.30-481.el9.x86_64.rpm 211 kB/s | 15 kB 00:00 (172/207): perl-overloading-0.02-481.el9.noarch 50 kB/s | 13 kB 00:00 (173/207): perl-File-stat-1.09-481.el9.noarch.r 222 kB/s | 17 kB 00:00 (174/207): perl-File-Basename-2.85-481.el9.noar 191 kB/s | 17 kB 00:00 (175/207): perl-FileHandle-2.03-481.el9.noarch. 226 kB/s | 16 kB 00:00 (176/207): perl-HTTP-Tiny-0.076-462.el9.noarch. 436 kB/s | 57 kB 00:00 (177/207): perl-Getopt-Std-1.12-481.el9.noarch. 97 kB/s | 16 kB 00:00 (178/207): perl-IO-1.43-481.el9.x86_64.rpm 741 kB/s | 92 kB 00:00 (179/207): perl-IPC-Open3-1.21-481.el9.noarch.r 295 kB/s | 24 kB 00:00 (180/207): perl-POSIX-1.94-481.el9.x86_64.rpm 790 kB/s | 98 kB 00:00 (181/207): perl-Symbol-1.08-481.el9.noarch.rpm 104 kB/s | 14 kB 00:00 (182/207): perl-base-2.27-481.el9.noarch.rpm 77 kB/s | 16 kB 00:00 (183/207): perl-libs-5.32.1-481.el9.x86_64.rpm 15 MB/s | 2.2 MB 00:00 (184/207): perl-interpreter-5.32.1-481.el9.x86_ 351 kB/s | 73 kB 00:00 (185/207): perl-mro-1.23-481.el9.x86_64.rpm 415 kB/s | 29 kB 00:00 (186/207): perl-overload-1.31-481.el9.noarch.rp 452 kB/s | 46 kB 00:00 (187/207): perl-vars-1.05-481.el9.noarch.rpm 117 kB/s | 13 kB 00:00 (188/207): pyproject-srpm-macros-1.12.0-1.el9.n 116 kB/s | 14 kB 00:00 (189/207): perl-Fcntl-1.13-481.el9.x86_64.rpm 328 kB/s | 22 kB 00:00 (190/207): debugedit-5.0-5.el9.x86_64.rpm 650 kB/s | 81 kB 00:00 (191/207): perl-subs-1.03-481.el9.noarch.rpm 133 kB/s | 12 kB 00:00 (192/207): python-srpm-macros-3.9-54.el9.noarch 271 kB/s | 18 kB 00:00 (193/207): redhat-rpm-config-208-1.el9.noarch.r 1.1 MB/s | 75 kB 00:00 (194/207): go-srpm-macros-3.6.0-3.el9.noarch.rp 150 kB/s | 28 kB 00:00 (195/207): perl-IO-Socket-SSL-2.073-2.el9.noarc 2.5 MB/s | 221 kB 00:00 (196/207): gdb-minimal-14.2-3.el9.x86_64.rpm 24 MB/s | 4.2 MB 00:00 (197/207): perl-Scalar-List-Utils-1.56-462.el9. 960 kB/s | 75 kB 00:00 (198/207): perl-Net-SSLeay-1.94-1.el9.x86_64.rp 3.5 MB/s | 418 kB 00:00 (199/207): rpm-build-4.16.1.3-34.el9.x86_64.rpm 919 kB/s | 71 kB 00:00 (200/207): ansible-srpm-macros-1-16.el9.noarch. 283 kB/s | 21 kB 00:00 (201/207): epel-rpm-macros-9-14.el9.noarch.rpm 239 kB/s | 15 kB 00:00 (202/207): fpc-srpm-macros-1.3-7.el9.noarch.rpm 347 kB/s | 7.5 kB 00:00 (203/207): forge-srpm-macros-0.4.0-1.el9.noarch 318 kB/s | 19 kB 00:00 (204/207): qt6-srpm-macros-6.6.2-1.el9.noarch.r 405 kB/s | 8.7 kB 00:00 (205/207): rpmautospec-rpm-macros-0.7.3-1.el9.n 480 kB/s | 10 kB 00:00 (206/207): go-srpm-macros-epel-3.6.0.1-1.el9.no 627 kB/s | 26 kB 00:00 (207/207): rust-srpm-macros-epel-26.3-1.el9.noa 463 kB/s | 10 kB 00:00 -------------------------------------------------------------------------------- Total 7.3 MB/s | 69 MB 00:09 Red Hat Enterprise Linux - BaseOS 3.5 MB/s | 3.6 kB 00:00 Importing GPG key 0xFD431D51: Userid : "Red Hat, Inc. (release key 2) " Fingerprint: 567E 347A D004 4ADE 55BA 8A5F 199E 2F91 FD43 1D51 From : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release Key imported successfully Importing GPG key 0x5A6340B3: Userid : "Red Hat, Inc. (auxiliary key 3) " Fingerprint: 7E46 2425 8C40 6535 D56D 6F13 5054 E4A4 5A63 40B3 From : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release Key imported successfully Extra Packages for Enterprise Linux 9 - x86_64 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x3228467C: Userid : "Fedora (epel9) " Fingerprint: FF8A D134 4597 106E CE81 3B91 8A38 72BF 3228 467C From : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-9 Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.16-5.el9.x86_64 1/1 Preparing : 1/1 Installing : libgcc-11.5.0-2.el9.x86_64 1/207 Running scriptlet: libgcc-11.5.0-2.el9.x86_64 1/207 Installing : rust-srpm-macros-17-4.el9.noarch 2/207 Installing : redhat-release-9.5-0.6.el9.x86_64 3/207 Installing : setup-2.13.7-10.el9.noarch 4/207 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.13.7-10.el9.noarch 4/207 Installing : filesystem-3.16-5.el9.x86_64 5/207 Installing : basesystem-11-13.el9.noarch 6/207 Installing : rust-srpm-macros-epel-26.3-1.el9.noarch 7/207 Installing : qt6-srpm-macros-6.6.2-1.el9.noarch 8/207 Installing : fpc-srpm-macros-1.3-7.el9.noarch 9/207 Installing : ansible-srpm-macros-1-16.el9.noarch 10/207 Installing : qt5-srpm-macros-5.15.9-1.el9.noarch 11/207 Installing : ocaml-srpm-macros-6-6.el9.noarch 12/207 Installing : openblas-srpm-macros-2-11.el9.noarch 13/207 Installing : perl-srpm-macros-1-41.el9.noarch 14/207 Installing : 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Installing : binutils-2.35.2-54.el9.x86_64 186/207 Running scriptlet: binutils-2.35.2-54.el9.x86_64 186/207 Installing : elfutils-0.191-4.el9.x86_64 187/207 Installing : gdb-minimal-14.2-3.el9.x86_64 188/207 Installing : debugedit-5.0-5.el9.x86_64 189/207 Installing : curl-7.76.1-31.el9.x86_64 190/207 Installing : rpm-libs-4.16.1.3-34.el9.x86_64 191/207 Installing : rpm-4.16.1.3-34.el9.x86_64 192/207 Installing : lua-srpm-macros-1-6.el9.noarch 193/207 Installing : efi-srpm-macros-6-2.el9_0.noarch 194/207 Installing : rpmautospec-rpm-macros-0.7.3-1.el9.noarch 195/207 Installing : rpm-build-libs-4.16.1.3-34.el9.x86_64 196/207 Installing : fonts-srpm-macros-1:2.0.5-7.el9.1.noarch 197/207 Installing : go-srpm-macros-3.6.0-3.el9.noarch 198/207 Installing : python-srpm-macros-3.9-54.el9.noarch 199/207 Installing : redhat-rpm-config-208-1.el9.noarch 200/207 Installing : rpm-build-4.16.1.3-34.el9.x86_64 201/207 Installing : pyproject-srpm-macros-1.12.0-1.el9.noarch 202/207 Installing : forge-srpm-macros-0.4.0-1.el9.noarch 203/207 Installing : go-srpm-macros-epel-3.6.0.1-1.el9.noarch 204/207 Installing : epel-rpm-macros-9-14.el9.noarch 205/207 Installing : util-linux-2.37.4-20.el9.x86_64 206/207 Installing : which-2.21-29.el9.x86_64 207/207 Running scriptlet: filesystem-3.16-5.el9.x86_64 207/207 Running scriptlet: ca-certificates-2024.2.69_v8.0.303-91.4.el9_4.no 207/207 Running scriptlet: rpm-4.16.1.3-34.el9.x86_64 207/207 Running scriptlet: which-2.21-29.el9.x86_64 207/207 Verifying : basesystem-11-13.el9.noarch 1/207 Verifying : bzip2-1.0.8-8.el9.x86_64 2/207 Verifying : bzip2-libs-1.0.8-8.el9.x86_64 3/207 Verifying : cpio-2.13-16.el9.x86_64 4/207 Verifying : cracklib-2.9.6-27.el9.x86_64 5/207 Verifying : ed-1.14.2-12.el9.x86_64 6/207 Verifying : grep-3.6-5.el9.x86_64 7/207 Verifying : groff-base-1.22.4-10.el9.x86_64 8/207 Verifying : info-6.7-15.el9.x86_64 9/207 Verifying : libattr-2.5.1-3.el9.x86_64 10/207 Verifying : libcap-ng-0.8.2-7.el9.x86_64 11/207 Verifying : libgpg-error-1.42-5.el9.x86_64 12/207 Verifying : libidn2-2.3.0-7.el9.x86_64 13/207 Verifying : libpsl-0.21.1-5.el9.x86_64 14/207 Verifying : libpwquality-1.4.4-8.el9.x86_64 15/207 Verifying : libsigsegv-2.13-4.el9.x86_64 16/207 Verifying : libunistring-0.9.10-15.el9.x86_64 17/207 Verifying : libutempter-1.2.1-6.el9.x86_64 18/207 Verifying : libverto-0.3.2-3.el9.x86_64 19/207 Verifying : libxcrypt-4.4.18-3.el9.x86_64 20/207 Verifying : libzstd-1.5.1-2.el9.x86_64 21/207 Verifying : lz4-libs-1.9.3-5.el9.x86_64 22/207 Verifying : mpfr-4.1.0-7.el9.x86_64 23/207 Verifying : popt-1.18-8.el9.x86_64 24/207 Verifying : publicsuffix-list-dafsa-20210518-3.el9.noarch 25/207 Verifying : readline-8.1-4.el9.x86_64 26/207 Verifying : sed-4.8-9.el9.x86_64 27/207 Verifying : cracklib-dicts-2.9.6-27.el9.x86_64 28/207 Verifying : diffutils-3.7-12.el9.x86_64 29/207 Verifying : gawk-5.1.0-6.el9.x86_64 30/207 Verifying : xz-5.2.5-8.el9_0.x86_64 31/207 Verifying : xz-libs-5.2.5-8.el9_0.x86_64 32/207 Verifying : zstd-1.5.1-2.el9.x86_64 33/207 Verifying : cyrus-sasl-lib-2.1.27-21.el9.x86_64 34/207 Verifying : gzip-1.12-1.el9.x86_64 35/207 Verifying : libtasn1-4.16.0-8.el9_1.x86_64 36/207 Verifying : keyutils-libs-1.6.3-1.el9.x86_64 37/207 Verifying : libarchive-3.5.3-4.el9.x86_64 38/207 Verifying : libcap-2.48-9.el9_2.x86_64 39/207 Verifying : libpkgconf-1.7.3-10.el9.x86_64 40/207 Verifying : pkgconf-1.7.3-10.el9.x86_64 41/207 Verifying : pkgconf-m4-1.7.3-10.el9.noarch 42/207 Verifying : pkgconf-pkg-config-1.7.3-10.el9.x86_64 43/207 Verifying : zip-3.0-35.el9.x86_64 44/207 Verifying : gmp-1:6.2.0-13.el9.x86_64 45/207 Verifying : libffi-3.4.2-8.el9.x86_64 46/207 Verifying : lua-libs-5.4.4-4.el9.x86_64 47/207 Verifying : ncurses-6.2-10.20210508.el9.x86_64 48/207 Verifying : ncurses-base-6.2-10.20210508.el9.noarch 49/207 Verifying : ncurses-libs-6.2-10.20210508.el9.x86_64 50/207 Verifying : which-2.21-29.el9.x86_64 51/207 Verifying : zlib-1.2.11-40.el9.x86_64 52/207 Verifying : bash-5.1.8-9.el9.x86_64 53/207 Verifying : file-5.39-16.el9.x86_64 54/207 Verifying : file-libs-5.39-16.el9.x86_64 55/207 Verifying : libacl-2.3.1-4.el9.x86_64 56/207 Verifying : libselinux-3.6-1.el9.x86_64 57/207 Verifying : libsepol-3.6-1.el9.x86_64 58/207 Verifying : openldap-2.6.6-3.el9.x86_64 59/207 Verifying : setup-2.13.7-10.el9.noarch 60/207 Verifying : sqlite-libs-3.34.1-7.el9_3.x86_64 61/207 Verifying : ca-certificates-2024.2.69_v8.0.303-91.4.el9_4.no 62/207 Verifying : libcom_err-1.46.5-5.el9.x86_64 63/207 Verifying : libevent-2.1.12-8.el9_4.x86_64 64/207 Verifying : libssh-0.10.4-13.el9.x86_64 65/207 Verifying : libssh-config-0.10.4-13.el9.noarch 66/207 Verifying : libxml2-2.9.13-6.el9_4.x86_64 67/207 Verifying : alternatives-1.24-1.el9_5.1.x86_64 68/207 Verifying : audit-libs-3.1.5-1.el9.x86_64 69/207 Verifying : binutils-2.35.2-54.el9.x86_64 70/207 Verifying : binutils-gold-2.35.2-54.el9.x86_64 71/207 Verifying : coreutils-8.32-36.el9.x86_64 72/207 Verifying : coreutils-common-8.32-36.el9.x86_64 73/207 Verifying : crypto-policies-20240828-2.git626aa59.el9_5.noar 74/207 Verifying : curl-7.76.1-31.el9.x86_64 75/207 Verifying : elfutils-0.191-4.el9.x86_64 76/207 Verifying : elfutils-debuginfod-client-0.191-4.el9.x86_64 77/207 Verifying : elfutils-default-yama-scope-0.191-4.el9.noarch 78/207 Verifying : elfutils-libelf-0.191-4.el9.x86_64 79/207 Verifying : elfutils-libs-0.191-4.el9.x86_64 80/207 Verifying : filesystem-3.16-5.el9.x86_64 81/207 Verifying : findutils-1:4.8.0-7.el9.x86_64 82/207 Verifying : gdbm-libs-1:1.23-1.el9.x86_64 83/207 Verifying : glibc-2.34-125.el9_5.1.x86_64 84/207 Verifying : glibc-common-2.34-125.el9_5.1.x86_64 85/207 Verifying : glibc-gconv-extra-2.34-125.el9_5.1.x86_64 86/207 Verifying : glibc-minimal-langpack-2.34-125.el9_5.1.x86_64 87/207 Verifying : libblkid-2.37.4-20.el9.x86_64 88/207 Verifying : libcurl-7.76.1-31.el9.x86_64 89/207 Verifying : libdb-5.3.28-54.el9.x86_64 90/207 Verifying : libeconf-0.4.1-4.el9.x86_64 91/207 Verifying : libfdisk-2.37.4-20.el9.x86_64 92/207 Verifying : libgcc-11.5.0-2.el9.x86_64 93/207 Verifying : libgcrypt-1.10.0-11.el9.x86_64 94/207 Verifying : libgomp-11.5.0-2.el9.x86_64 95/207 Verifying : libmount-2.37.4-20.el9.x86_64 96/207 Verifying : libnghttp2-1.43.0-6.el9.x86_64 97/207 Verifying : libsmartcols-2.37.4-20.el9.x86_64 98/207 Verifying : libstdc++-11.5.0-2.el9.x86_64 99/207 Verifying : libuuid-2.37.4-20.el9.x86_64 100/207 Verifying : openssl-1:3.2.2-6.el9_5.x86_64 101/207 Verifying : openssl-fips-provider-3.0.7-6.el9_5.x86_64 102/207 Verifying : openssl-fips-provider-so-3.0.7-6.el9_5.x86_64 103/207 Verifying : openssl-libs-1:3.2.2-6.el9_5.x86_64 104/207 Verifying : pcre-8.44-4.el9.x86_64 105/207 Verifying : pcre2-10.40-6.el9.x86_64 106/207 Verifying : pcre2-syntax-10.40-6.el9.noarch 107/207 Verifying : redhat-release-9.5-0.6.el9.x86_64 108/207 Verifying : rpm-4.16.1.3-34.el9.x86_64 109/207 Verifying : rpm-build-libs-4.16.1.3-34.el9.x86_64 110/207 Verifying : rpm-libs-4.16.1.3-34.el9.x86_64 111/207 Verifying : systemd-libs-252-46.el9_5.2.x86_64 112/207 Verifying : tar-2:1.34-7.el9.x86_64 113/207 Verifying : tzdata-2024b-2.el9.noarch 114/207 Verifying : unzip-6.0-57.el9.x86_64 115/207 Verifying : util-linux-2.37.4-20.el9.x86_64 116/207 Verifying : util-linux-core-2.37.4-20.el9.x86_64 117/207 Verifying : krb5-libs-1.21.1-4.el9_5.x86_64 118/207 Verifying : pam-1.5.1-22.el9_5.x86_64 119/207 Verifying : libbrotli-1.0.9-7.el9_5.x86_64 120/207 Verifying : p11-kit-0.25.3-3.el9_5.x86_64 121/207 Verifying : shadow-utils-2:4.9-10.el9_5.x86_64 122/207 Verifying : p11-kit-trust-0.25.3-3.el9_5.x86_64 123/207 Verifying : libsemanage-3.6-2.1.el9_5.x86_64 124/207 Verifying : ghc-srpm-macros-1.5.0-6.el9.noarch 125/207 Verifying : lua-srpm-macros-1-6.el9.noarch 126/207 Verifying : perl-Data-Dumper-2.174-462.el9.x86_64 127/207 Verifying : perl-Digest-MD5-2.58-4.el9.x86_64 128/207 Verifying : perl-Encode-4:3.08-462.el9.x86_64 129/207 Verifying : perl-Mozilla-CA-20200520-6.el9.noarch 130/207 Verifying : perl-Pod-Simple-1:3.42-4.el9.noarch 131/207 Verifying : perl-Term-Cap-1.17-460.el9.noarch 132/207 Verifying : perl-Time-Local-2:1.300-7.el9.noarch 133/207 Verifying : rust-srpm-macros-17-4.el9.noarch 134/207 Verifying : perl-Pod-Escapes-1:1.07-460.el9.noarch 135/207 Verifying : perl-Storable-1:3.21-460.el9.x86_64 136/207 Verifying : perl-podlators-1:4.14-460.el9.noarch 137/207 Verifying : dwz-0.14-3.el9.x86_64 138/207 Verifying : perl-Exporter-5.74-461.el9.noarch 139/207 Verifying : perl-File-Temp-1:0.231.100-4.el9.noarch 140/207 Verifying : perl-Getopt-Long-1:2.52-4.el9.noarch 141/207 Verifying : perl-MIME-Base64-3.16-4.el9.x86_64 142/207 Verifying : perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch 143/207 Verifying : perl-parent-1:0.238-460.el9.noarch 144/207 Verifying : perl-srpm-macros-1-41.el9.noarch 145/207 Verifying : efi-srpm-macros-6-2.el9_0.noarch 146/207 Verifying : openblas-srpm-macros-2-11.el9.noarch 147/207 Verifying : perl-Digest-1.19-4.el9.noarch 148/207 Verifying : perl-File-Path-2.18-4.el9.noarch 149/207 Verifying : perl-IO-Socket-IP-0.41-5.el9.noarch 150/207 Verifying : perl-Pod-Usage-4:2.01-4.el9.noarch 151/207 Verifying : perl-Socket-4:2.031-4.el9.x86_64 152/207 Verifying : perl-Term-ANSIColor-5.01-461.el9.noarch 153/207 Verifying : perl-Text-ParseWords-3.30-460.el9.noarch 154/207 Verifying : perl-URI-5.09-3.el9.noarch 155/207 Verifying : perl-constant-1.33-461.el9.noarch 156/207 Verifying : fonts-srpm-macros-1:2.0.5-7.el9.1.noarch 157/207 Verifying : ocaml-srpm-macros-6-6.el9.noarch 158/207 Verifying : patch-2.7.6-16.el9.x86_64 159/207 Verifying : perl-Pod-Perldoc-3.28.01-461.el9.noarch 160/207 Verifying : perl-libnet-3.13-4.el9.noarch 161/207 Verifying : perl-Carp-1.50-460.el9.noarch 162/207 Verifying : perl-PathTools-3.78-461.el9.x86_64 163/207 Verifying : kernel-srpm-macros-1.0-13.el9.noarch 164/207 Verifying : qt5-srpm-macros-5.15.9-1.el9.noarch 165/207 Verifying : perl-AutoLoader-5.74-481.el9.noarch 166/207 Verifying : perl-SelectSaver-1.02-481.el9.noarch 167/207 Verifying : perl-if-0.60.800-481.el9.noarch 168/207 Verifying : perl-overloading-0.02-481.el9.noarch 169/207 Verifying : perl-B-1.80-481.el9.x86_64 170/207 Verifying : perl-Class-Struct-0.66-481.el9.noarch 171/207 Verifying : perl-Errno-1.30-481.el9.x86_64 172/207 Verifying : perl-File-Basename-2.85-481.el9.noarch 173/207 Verifying : perl-File-stat-1.09-481.el9.noarch 174/207 Verifying : perl-FileHandle-2.03-481.el9.noarch 175/207 Verifying : perl-Getopt-Std-1.12-481.el9.noarch 176/207 Verifying : perl-HTTP-Tiny-0.076-462.el9.noarch 177/207 Verifying : perl-IO-1.43-481.el9.x86_64 178/207 Verifying : perl-IPC-Open3-1.21-481.el9.noarch 179/207 Verifying : perl-POSIX-1.94-481.el9.x86_64 180/207 Verifying : perl-Symbol-1.08-481.el9.noarch 181/207 Verifying : perl-base-2.27-481.el9.noarch 182/207 Verifying : perl-interpreter-4:5.32.1-481.el9.x86_64 183/207 Verifying : perl-libs-4:5.32.1-481.el9.x86_64 184/207 Verifying : perl-mro-1.23-481.el9.x86_64 185/207 Verifying : perl-overload-1.31-481.el9.noarch 186/207 Verifying : perl-vars-1.05-481.el9.noarch 187/207 Verifying : pyproject-srpm-macros-1.12.0-1.el9.noarch 188/207 Verifying : debugedit-5.0-5.el9.x86_64 189/207 Verifying : perl-Fcntl-1.13-481.el9.x86_64 190/207 Verifying : perl-subs-1.03-481.el9.noarch 191/207 Verifying : go-srpm-macros-3.6.0-3.el9.noarch 192/207 Verifying : python-srpm-macros-3.9-54.el9.noarch 193/207 Verifying : redhat-rpm-config-208-1.el9.noarch 194/207 Verifying : gdb-minimal-14.2-3.el9.x86_64 195/207 Verifying : perl-IO-Socket-SSL-2.073-2.el9.noarch 196/207 Verifying : perl-Net-SSLeay-1.94-1.el9.x86_64 197/207 Verifying : perl-Scalar-List-Utils-4:1.56-462.el9.x86_64 198/207 Verifying : rpm-build-4.16.1.3-34.el9.x86_64 199/207 Verifying : ansible-srpm-macros-1-16.el9.noarch 200/207 Verifying : epel-rpm-macros-9-14.el9.noarch 201/207 Verifying : forge-srpm-macros-0.4.0-1.el9.noarch 202/207 Verifying : fpc-srpm-macros-1.3-7.el9.noarch 203/207 Verifying : go-srpm-macros-epel-3.6.0.1-1.el9.noarch 204/207 Verifying : qt6-srpm-macros-6.6.2-1.el9.noarch 205/207 Verifying : rpmautospec-rpm-macros-0.7.3-1.el9.noarch 206/207 Verifying : rust-srpm-macros-epel-26.3-1.el9.noarch 207/207 Installed products updated. Installed: alternatives-1.24-1.el9_5.1.x86_64 ansible-srpm-macros-1-16.el9.noarch audit-libs-3.1.5-1.el9.x86_64 basesystem-11-13.el9.noarch bash-5.1.8-9.el9.x86_64 binutils-2.35.2-54.el9.x86_64 binutils-gold-2.35.2-54.el9.x86_64 bzip2-1.0.8-8.el9.x86_64 bzip2-libs-1.0.8-8.el9.x86_64 ca-certificates-2024.2.69_v8.0.303-91.4.el9_4.noarch coreutils-8.32-36.el9.x86_64 coreutils-common-8.32-36.el9.x86_64 cpio-2.13-16.el9.x86_64 cracklib-2.9.6-27.el9.x86_64 cracklib-dicts-2.9.6-27.el9.x86_64 crypto-policies-20240828-2.git626aa59.el9_5.noarch curl-7.76.1-31.el9.x86_64 cyrus-sasl-lib-2.1.27-21.el9.x86_64 debugedit-5.0-5.el9.x86_64 diffutils-3.7-12.el9.x86_64 dwz-0.14-3.el9.x86_64 ed-1.14.2-12.el9.x86_64 efi-srpm-macros-6-2.el9_0.noarch elfutils-0.191-4.el9.x86_64 elfutils-debuginfod-client-0.191-4.el9.x86_64 elfutils-default-yama-scope-0.191-4.el9.noarch elfutils-libelf-0.191-4.el9.x86_64 elfutils-libs-0.191-4.el9.x86_64 epel-rpm-macros-9-14.el9.noarch file-5.39-16.el9.x86_64 file-libs-5.39-16.el9.x86_64 filesystem-3.16-5.el9.x86_64 findutils-1:4.8.0-7.el9.x86_64 fonts-srpm-macros-1:2.0.5-7.el9.1.noarch forge-srpm-macros-0.4.0-1.el9.noarch fpc-srpm-macros-1.3-7.el9.noarch gawk-5.1.0-6.el9.x86_64 gdb-minimal-14.2-3.el9.x86_64 gdbm-libs-1:1.23-1.el9.x86_64 ghc-srpm-macros-1.5.0-6.el9.noarch glibc-2.34-125.el9_5.1.x86_64 glibc-common-2.34-125.el9_5.1.x86_64 glibc-gconv-extra-2.34-125.el9_5.1.x86_64 glibc-minimal-langpack-2.34-125.el9_5.1.x86_64 gmp-1:6.2.0-13.el9.x86_64 go-srpm-macros-3.6.0-3.el9.noarch go-srpm-macros-epel-3.6.0.1-1.el9.noarch grep-3.6-5.el9.x86_64 groff-base-1.22.4-10.el9.x86_64 gzip-1.12-1.el9.x86_64 info-6.7-15.el9.x86_64 kernel-srpm-macros-1.0-13.el9.noarch keyutils-libs-1.6.3-1.el9.x86_64 krb5-libs-1.21.1-4.el9_5.x86_64 libacl-2.3.1-4.el9.x86_64 libarchive-3.5.3-4.el9.x86_64 libattr-2.5.1-3.el9.x86_64 libblkid-2.37.4-20.el9.x86_64 libbrotli-1.0.9-7.el9_5.x86_64 libcap-2.48-9.el9_2.x86_64 libcap-ng-0.8.2-7.el9.x86_64 libcom_err-1.46.5-5.el9.x86_64 libcurl-7.76.1-31.el9.x86_64 libdb-5.3.28-54.el9.x86_64 libeconf-0.4.1-4.el9.x86_64 libevent-2.1.12-8.el9_4.x86_64 libfdisk-2.37.4-20.el9.x86_64 libffi-3.4.2-8.el9.x86_64 libgcc-11.5.0-2.el9.x86_64 libgcrypt-1.10.0-11.el9.x86_64 libgomp-11.5.0-2.el9.x86_64 libgpg-error-1.42-5.el9.x86_64 libidn2-2.3.0-7.el9.x86_64 libmount-2.37.4-20.el9.x86_64 libnghttp2-1.43.0-6.el9.x86_64 libpkgconf-1.7.3-10.el9.x86_64 libpsl-0.21.1-5.el9.x86_64 libpwquality-1.4.4-8.el9.x86_64 libselinux-3.6-1.el9.x86_64 libsemanage-3.6-2.1.el9_5.x86_64 libsepol-3.6-1.el9.x86_64 libsigsegv-2.13-4.el9.x86_64 libsmartcols-2.37.4-20.el9.x86_64 libssh-0.10.4-13.el9.x86_64 libssh-config-0.10.4-13.el9.noarch libstdc++-11.5.0-2.el9.x86_64 libtasn1-4.16.0-8.el9_1.x86_64 libunistring-0.9.10-15.el9.x86_64 libutempter-1.2.1-6.el9.x86_64 libuuid-2.37.4-20.el9.x86_64 libverto-0.3.2-3.el9.x86_64 libxcrypt-4.4.18-3.el9.x86_64 libxml2-2.9.13-6.el9_4.x86_64 libzstd-1.5.1-2.el9.x86_64 lua-libs-5.4.4-4.el9.x86_64 lua-srpm-macros-1-6.el9.noarch lz4-libs-1.9.3-5.el9.x86_64 mpfr-4.1.0-7.el9.x86_64 ncurses-6.2-10.20210508.el9.x86_64 ncurses-base-6.2-10.20210508.el9.noarch ncurses-libs-6.2-10.20210508.el9.x86_64 ocaml-srpm-macros-6-6.el9.noarch openblas-srpm-macros-2-11.el9.noarch openldap-2.6.6-3.el9.x86_64 openssl-1:3.2.2-6.el9_5.x86_64 openssl-fips-provider-3.0.7-6.el9_5.x86_64 openssl-fips-provider-so-3.0.7-6.el9_5.x86_64 openssl-libs-1:3.2.2-6.el9_5.x86_64 p11-kit-0.25.3-3.el9_5.x86_64 p11-kit-trust-0.25.3-3.el9_5.x86_64 pam-1.5.1-22.el9_5.x86_64 patch-2.7.6-16.el9.x86_64 pcre-8.44-4.el9.x86_64 pcre2-10.40-6.el9.x86_64 pcre2-syntax-10.40-6.el9.noarch perl-AutoLoader-5.74-481.el9.noarch perl-B-1.80-481.el9.x86_64 perl-Carp-1.50-460.el9.noarch perl-Class-Struct-0.66-481.el9.noarch perl-Data-Dumper-2.174-462.el9.x86_64 perl-Digest-1.19-4.el9.noarch perl-Digest-MD5-2.58-4.el9.x86_64 perl-Encode-4:3.08-462.el9.x86_64 perl-Errno-1.30-481.el9.x86_64 perl-Exporter-5.74-461.el9.noarch perl-Fcntl-1.13-481.el9.x86_64 perl-File-Basename-2.85-481.el9.noarch perl-File-Path-2.18-4.el9.noarch perl-File-Temp-1:0.231.100-4.el9.noarch perl-File-stat-1.09-481.el9.noarch perl-FileHandle-2.03-481.el9.noarch perl-Getopt-Long-1:2.52-4.el9.noarch perl-Getopt-Std-1.12-481.el9.noarch perl-HTTP-Tiny-0.076-462.el9.noarch perl-IO-1.43-481.el9.x86_64 perl-IO-Socket-IP-0.41-5.el9.noarch perl-IO-Socket-SSL-2.073-2.el9.noarch perl-IPC-Open3-1.21-481.el9.noarch perl-MIME-Base64-3.16-4.el9.x86_64 perl-Mozilla-CA-20200520-6.el9.noarch perl-Net-SSLeay-1.94-1.el9.x86_64 perl-POSIX-1.94-481.el9.x86_64 perl-PathTools-3.78-461.el9.x86_64 perl-Pod-Escapes-1:1.07-460.el9.noarch perl-Pod-Perldoc-3.28.01-461.el9.noarch perl-Pod-Simple-1:3.42-4.el9.noarch perl-Pod-Usage-4:2.01-4.el9.noarch perl-Scalar-List-Utils-4:1.56-462.el9.x86_64 perl-SelectSaver-1.02-481.el9.noarch perl-Socket-4:2.031-4.el9.x86_64 perl-Storable-1:3.21-460.el9.x86_64 perl-Symbol-1.08-481.el9.noarch perl-Term-ANSIColor-5.01-461.el9.noarch perl-Term-Cap-1.17-460.el9.noarch perl-Text-ParseWords-3.30-460.el9.noarch perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch perl-Time-Local-2:1.300-7.el9.noarch perl-URI-5.09-3.el9.noarch perl-base-2.27-481.el9.noarch perl-constant-1.33-461.el9.noarch perl-if-0.60.800-481.el9.noarch perl-interpreter-4:5.32.1-481.el9.x86_64 perl-libnet-3.13-4.el9.noarch perl-libs-4:5.32.1-481.el9.x86_64 perl-mro-1.23-481.el9.x86_64 perl-overload-1.31-481.el9.noarch perl-overloading-0.02-481.el9.noarch perl-parent-1:0.238-460.el9.noarch perl-podlators-1:4.14-460.el9.noarch perl-srpm-macros-1-41.el9.noarch perl-subs-1.03-481.el9.noarch perl-vars-1.05-481.el9.noarch pkgconf-1.7.3-10.el9.x86_64 pkgconf-m4-1.7.3-10.el9.noarch pkgconf-pkg-config-1.7.3-10.el9.x86_64 popt-1.18-8.el9.x86_64 publicsuffix-list-dafsa-20210518-3.el9.noarch pyproject-srpm-macros-1.12.0-1.el9.noarch python-srpm-macros-3.9-54.el9.noarch qt5-srpm-macros-5.15.9-1.el9.noarch qt6-srpm-macros-6.6.2-1.el9.noarch readline-8.1-4.el9.x86_64 redhat-release-9.5-0.6.el9.x86_64 redhat-rpm-config-208-1.el9.noarch rpm-4.16.1.3-34.el9.x86_64 rpm-build-4.16.1.3-34.el9.x86_64 rpm-build-libs-4.16.1.3-34.el9.x86_64 rpm-libs-4.16.1.3-34.el9.x86_64 rpmautospec-rpm-macros-0.7.3-1.el9.noarch rust-srpm-macros-17-4.el9.noarch rust-srpm-macros-epel-26.3-1.el9.noarch sed-4.8-9.el9.x86_64 setup-2.13.7-10.el9.noarch shadow-utils-2:4.9-10.el9_5.x86_64 sqlite-libs-3.34.1-7.el9_3.x86_64 systemd-libs-252-46.el9_5.2.x86_64 tar-2:1.34-7.el9.x86_64 tzdata-2024b-2.el9.noarch unzip-6.0-57.el9.x86_64 util-linux-2.37.4-20.el9.x86_64 util-linux-core-2.37.4-20.el9.x86_64 which-2.21-29.el9.x86_64 xz-5.2.5-8.el9_0.x86_64 xz-libs-5.2.5-8.el9_0.x86_64 zip-3.0-35.el9.x86_64 zlib-1.2.11-40.el9.x86_64 zstd-1.5.1-2.el9.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.24-1.el9_5.1.x86_64 ansible-srpm-macros-1-16.el9.noarch audit-libs-3.1.5-1.el9.x86_64 basesystem-11-13.el9.noarch bash-5.1.8-9.el9.x86_64 binutils-2.35.2-54.el9.x86_64 binutils-gold-2.35.2-54.el9.x86_64 bzip2-1.0.8-8.el9.x86_64 bzip2-libs-1.0.8-8.el9.x86_64 ca-certificates-2024.2.69_v8.0.303-91.4.el9_4.noarch coreutils-8.32-36.el9.x86_64 coreutils-common-8.32-36.el9.x86_64 cpio-2.13-16.el9.x86_64 cracklib-2.9.6-27.el9.x86_64 cracklib-dicts-2.9.6-27.el9.x86_64 crypto-policies-20240828-2.git626aa59.el9_5.noarch curl-7.76.1-31.el9.x86_64 cyrus-sasl-lib-2.1.27-21.el9.x86_64 debugedit-5.0-5.el9.x86_64 diffutils-3.7-12.el9.x86_64 dwz-0.14-3.el9.x86_64 ed-1.14.2-12.el9.x86_64 efi-srpm-macros-6-2.el9_0.noarch elfutils-0.191-4.el9.x86_64 elfutils-debuginfod-client-0.191-4.el9.x86_64 elfutils-default-yama-scope-0.191-4.el9.noarch elfutils-libelf-0.191-4.el9.x86_64 elfutils-libs-0.191-4.el9.x86_64 epel-rpm-macros-9-14.el9.noarch file-5.39-16.el9.x86_64 file-libs-5.39-16.el9.x86_64 filesystem-3.16-5.el9.x86_64 findutils-4.8.0-7.el9.x86_64 fonts-srpm-macros-2.0.5-7.el9.1.noarch forge-srpm-macros-0.4.0-1.el9.noarch fpc-srpm-macros-1.3-7.el9.noarch gawk-5.1.0-6.el9.x86_64 gdb-minimal-14.2-3.el9.x86_64 gdbm-libs-1.23-1.el9.x86_64 ghc-srpm-macros-1.5.0-6.el9.noarch glibc-2.34-125.el9_5.1.x86_64 glibc-common-2.34-125.el9_5.1.x86_64 glibc-gconv-extra-2.34-125.el9_5.1.x86_64 glibc-minimal-langpack-2.34-125.el9_5.1.x86_64 gmp-6.2.0-13.el9.x86_64 go-srpm-macros-3.6.0-3.el9.noarch go-srpm-macros-epel-3.6.0.1-1.el9.noarch gpg-pubkey-3228467c-613798eb gpg-pubkey-5a6340b3-6229229e gpg-pubkey-fd431d51-4ae0493b grep-3.6-5.el9.x86_64 groff-base-1.22.4-10.el9.x86_64 gzip-1.12-1.el9.x86_64 info-6.7-15.el9.x86_64 kernel-srpm-macros-1.0-13.el9.noarch keyutils-libs-1.6.3-1.el9.x86_64 krb5-libs-1.21.1-4.el9_5.x86_64 libacl-2.3.1-4.el9.x86_64 libarchive-3.5.3-4.el9.x86_64 libattr-2.5.1-3.el9.x86_64 libblkid-2.37.4-20.el9.x86_64 libbrotli-1.0.9-7.el9_5.x86_64 libcap-2.48-9.el9_2.x86_64 libcap-ng-0.8.2-7.el9.x86_64 libcom_err-1.46.5-5.el9.x86_64 libcurl-7.76.1-31.el9.x86_64 libdb-5.3.28-54.el9.x86_64 libeconf-0.4.1-4.el9.x86_64 libevent-2.1.12-8.el9_4.x86_64 libfdisk-2.37.4-20.el9.x86_64 libffi-3.4.2-8.el9.x86_64 libgcc-11.5.0-2.el9.x86_64 libgcrypt-1.10.0-11.el9.x86_64 libgomp-11.5.0-2.el9.x86_64 libgpg-error-1.42-5.el9.x86_64 libidn2-2.3.0-7.el9.x86_64 libmount-2.37.4-20.el9.x86_64 libnghttp2-1.43.0-6.el9.x86_64 libpkgconf-1.7.3-10.el9.x86_64 libpsl-0.21.1-5.el9.x86_64 libpwquality-1.4.4-8.el9.x86_64 libselinux-3.6-1.el9.x86_64 libsemanage-3.6-2.1.el9_5.x86_64 libsepol-3.6-1.el9.x86_64 libsigsegv-2.13-4.el9.x86_64 libsmartcols-2.37.4-20.el9.x86_64 libssh-0.10.4-13.el9.x86_64 libssh-config-0.10.4-13.el9.noarch libstdc++-11.5.0-2.el9.x86_64 libtasn1-4.16.0-8.el9_1.x86_64 libunistring-0.9.10-15.el9.x86_64 libutempter-1.2.1-6.el9.x86_64 libuuid-2.37.4-20.el9.x86_64 libverto-0.3.2-3.el9.x86_64 libxcrypt-4.4.18-3.el9.x86_64 libxml2-2.9.13-6.el9_4.x86_64 libzstd-1.5.1-2.el9.x86_64 lua-libs-5.4.4-4.el9.x86_64 lua-srpm-macros-1-6.el9.noarch lz4-libs-1.9.3-5.el9.x86_64 mpfr-4.1.0-7.el9.x86_64 ncurses-6.2-10.20210508.el9.x86_64 ncurses-base-6.2-10.20210508.el9.noarch ncurses-libs-6.2-10.20210508.el9.x86_64 ocaml-srpm-macros-6-6.el9.noarch openblas-srpm-macros-2-11.el9.noarch openldap-2.6.6-3.el9.x86_64 openssl-3.2.2-6.el9_5.x86_64 openssl-fips-provider-3.0.7-6.el9_5.x86_64 openssl-fips-provider-so-3.0.7-6.el9_5.x86_64 openssl-libs-3.2.2-6.el9_5.x86_64 p11-kit-0.25.3-3.el9_5.x86_64 p11-kit-trust-0.25.3-3.el9_5.x86_64 pam-1.5.1-22.el9_5.x86_64 patch-2.7.6-16.el9.x86_64 pcre-8.44-4.el9.x86_64 pcre2-10.40-6.el9.x86_64 pcre2-syntax-10.40-6.el9.noarch perl-AutoLoader-5.74-481.el9.noarch perl-B-1.80-481.el9.x86_64 perl-Carp-1.50-460.el9.noarch perl-Class-Struct-0.66-481.el9.noarch perl-Data-Dumper-2.174-462.el9.x86_64 perl-Digest-1.19-4.el9.noarch perl-Digest-MD5-2.58-4.el9.x86_64 perl-Encode-3.08-462.el9.x86_64 perl-Errno-1.30-481.el9.x86_64 perl-Exporter-5.74-461.el9.noarch perl-Fcntl-1.13-481.el9.x86_64 perl-File-Basename-2.85-481.el9.noarch perl-File-Path-2.18-4.el9.noarch perl-File-Temp-0.231.100-4.el9.noarch perl-File-stat-1.09-481.el9.noarch perl-FileHandle-2.03-481.el9.noarch perl-Getopt-Long-2.52-4.el9.noarch perl-Getopt-Std-1.12-481.el9.noarch perl-HTTP-Tiny-0.076-462.el9.noarch perl-IO-1.43-481.el9.x86_64 perl-IO-Socket-IP-0.41-5.el9.noarch perl-IO-Socket-SSL-2.073-2.el9.noarch perl-IPC-Open3-1.21-481.el9.noarch perl-MIME-Base64-3.16-4.el9.x86_64 perl-Mozilla-CA-20200520-6.el9.noarch perl-Net-SSLeay-1.94-1.el9.x86_64 perl-POSIX-1.94-481.el9.x86_64 perl-PathTools-3.78-461.el9.x86_64 perl-Pod-Escapes-1.07-460.el9.noarch perl-Pod-Perldoc-3.28.01-461.el9.noarch perl-Pod-Simple-3.42-4.el9.noarch perl-Pod-Usage-2.01-4.el9.noarch perl-Scalar-List-Utils-1.56-462.el9.x86_64 perl-SelectSaver-1.02-481.el9.noarch perl-Socket-2.031-4.el9.x86_64 perl-Storable-3.21-460.el9.x86_64 perl-Symbol-1.08-481.el9.noarch perl-Term-ANSIColor-5.01-461.el9.noarch perl-Term-Cap-1.17-460.el9.noarch perl-Text-ParseWords-3.30-460.el9.noarch perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch perl-Time-Local-1.300-7.el9.noarch perl-URI-5.09-3.el9.noarch perl-base-2.27-481.el9.noarch perl-constant-1.33-461.el9.noarch perl-if-0.60.800-481.el9.noarch perl-interpreter-5.32.1-481.el9.x86_64 perl-libnet-3.13-4.el9.noarch perl-libs-5.32.1-481.el9.x86_64 perl-mro-1.23-481.el9.x86_64 perl-overload-1.31-481.el9.noarch perl-overloading-0.02-481.el9.noarch perl-parent-0.238-460.el9.noarch perl-podlators-4.14-460.el9.noarch perl-srpm-macros-1-41.el9.noarch perl-subs-1.03-481.el9.noarch perl-vars-1.05-481.el9.noarch pkgconf-1.7.3-10.el9.x86_64 pkgconf-m4-1.7.3-10.el9.noarch pkgconf-pkg-config-1.7.3-10.el9.x86_64 popt-1.18-8.el9.x86_64 publicsuffix-list-dafsa-20210518-3.el9.noarch pyproject-srpm-macros-1.12.0-1.el9.noarch python-srpm-macros-3.9-54.el9.noarch qt5-srpm-macros-5.15.9-1.el9.noarch qt6-srpm-macros-6.6.2-1.el9.noarch readline-8.1-4.el9.x86_64 redhat-release-9.5-0.6.el9.x86_64 redhat-rpm-config-208-1.el9.noarch rpm-4.16.1.3-34.el9.x86_64 rpm-build-4.16.1.3-34.el9.x86_64 rpm-build-libs-4.16.1.3-34.el9.x86_64 rpm-libs-4.16.1.3-34.el9.x86_64 rpmautospec-rpm-macros-0.7.3-1.el9.noarch rust-srpm-macros-17-4.el9.noarch rust-srpm-macros-epel-26.3-1.el9.noarch sed-4.8-9.el9.x86_64 setup-2.13.7-10.el9.noarch shadow-utils-4.9-10.el9_5.x86_64 sqlite-libs-3.34.1-7.el9_3.x86_64 systemd-libs-252-46.el9_5.2.x86_64 tar-1.34-7.el9.x86_64 tzdata-2024b-2.el9.noarch unzip-6.0-57.el9.x86_64 util-linux-2.37.4-20.el9.x86_64 util-linux-core-2.37.4-20.el9.x86_64 which-2.21-29.el9.x86_64 xz-5.2.5-8.el9_0.x86_64 xz-libs-5.2.5-8.el9_0.x86_64 zip-3.0-35.el9.x86_64 zlib-1.2.11-40.el9.x86_64 zstd-1.5.1-2.el9.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736899200 Wrote: /builddir/build/SRPMS/python-biopython-1.85-1.el9.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/rhel+epel-9-x86_64-1736957274.987317/root/var/log/dnf.log /var/lib/mock/rhel+epel-9-x86_64-1736957274.987317/root/var/log/dnf.librepo.log /var/lib/mock/rhel+epel-9-x86_64-1736957274.987317/root/var/log/dnf.rpm.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-831wf5tz/python-biopython/python-biopython.spec) Config(child) 2 minutes 35 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-biopython-1.85-1.el9.src.rpm) Config(rhel+epel-9-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1736957274.987317/root. INFO: reusing tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1736957274.987317/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-1736957274.987317/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.16.1.3-34.el9.x86_64 python3-dnf-4.14.0-17.el9.noarch python3-dnf-plugins-core-4.3.0-16.el9.noarch yum-4.14.0-17.el9.noarch Finish: chroot init Start: build phase for python-biopython-1.85-1.el9.src.rpm Start: build setup for python-biopython-1.85-1.el9.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736899200 Wrote: /builddir/build/SRPMS/python-biopython-1.85-1.el9.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 39 kB/s | 1.5 kB 00:00 Red Hat Enterprise Linux - BaseOS 23 kB/s | 4.1 kB 00:00 Red Hat Enterprise Linux - AppStream 27 kB/s | 4.5 kB 00:00 Red Hat Enterprise Linux - CodeReady Linux Buil 18 kB/s | 4.5 kB 00:00 Extra Packages for Enterprise Linux 9 - x86_64 1.0 MB/s | 38 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: gcc x86_64 11.5.0-2.el9 appstream 32 M python3-devel x86_64 3.9.21-1.el9_5 appstream 249 k Installing dependencies: annobin x86_64 12.65-1.el9 appstream 1.0 M cpp x86_64 11.5.0-2.el9 appstream 11 M expat x86_64 2.5.0-3.el9_5.1 baseos 119 k gcc-plugin-annobin x86_64 11.5.0-2.el9 appstream 44 k glibc-devel x86_64 2.34-125.el9_5.1 appstream 37 k glibc-headers x86_64 2.34-125.el9_5.1 appstream 543 k kernel-headers x86_64 5.14.0-503.21.1.el9_5 appstream 3.7 M libedit x86_64 3.1-38.20210216cvs.el9 baseos 107 k libmpc x86_64 1.2.1-4.el9 appstream 65 k libxcrypt-devel x86_64 4.4.18-3.el9 appstream 32 k llvm-libs x86_64 18.1.8-3.el9 appstream 26 M make x86_64 1:4.3-8.el9 baseos 541 k pyproject-rpm-macros noarch 1.12.0-1.el9 codeready-builder 43 k python-rpm-macros noarch 3.9-54.el9 appstream 16 k python3 x86_64 3.9.21-1.el9_5 baseos 30 k python3-libs x86_64 3.9.21-1.el9_5 baseos 8.1 M python3-packaging noarch 23.1-1.el9 copr_base 80 k python3-pip-wheel noarch 21.3.1-1.el9 baseos 1.1 M python3-rpm-generators noarch 12-9.el9 appstream 29 k python3-rpm-macros noarch 3.9-54.el9 appstream 10 k python3-setuptools noarch 69.0.2-1.el9 copr_base 978 k python3-setuptools-wheel noarch 53.0.0-13.el9 baseos 469 k Transaction Summary ================================================================================ Install 24 Packages Total download size: 86 M Installed size: 269 M Downloading Packages: (1/24): python3-packaging-23.1-1.el9.noarch.rpm 638 kB/s | 80 kB 00:00 (2/24): python3-setuptools-69.0.2-1.el9.noarch. 5.2 MB/s | 978 kB 00:00 (3/24): libedit-3.1-38.20210216cvs.el9.x86_64.r 240 kB/s | 107 kB 00:00 (4/24): make-4.3-8.el9.x86_64.rpm 1.3 MB/s | 541 kB 00:00 (5/24): python3-pip-wheel-21.3.1-1.el9.noarch.r 3.1 MB/s | 1.1 MB 00:00 (6/24): python3-setuptools-wheel-53.0.0-13.el9. 3.2 MB/s | 469 kB 00:00 (7/24): expat-2.5.0-3.el9_5.1.x86_64.rpm 1.1 MB/s | 119 kB 00:00 (8/24): python3-3.9.21-1.el9_5.x86_64.rpm 324 kB/s | 30 kB 00:00 (9/24): libxcrypt-devel-4.4.18-3.el9.x86_64.rpm 219 kB/s | 32 kB 00:00 (10/24): libmpc-1.2.1-4.el9.x86_64.rpm 247 kB/s | 65 kB 00:00 (11/24): python3-rpm-generators-12-9.el9.noarch 257 kB/s | 29 kB 00:00 (12/24): python3-libs-3.9.21-1.el9_5.x86_64.rpm 22 MB/s | 8.1 MB 00:00 (13/24): gcc-plugin-annobin-11.5.0-2.el9.x86_64 471 kB/s | 44 kB 00:00 (14/24): glibc-devel-2.34-125.el9_5.1.x86_64.rp 257 kB/s | 37 kB 00:00 (15/24): python3-rpm-macros-3.9-54.el9.noarch.r 66 kB/s | 10 kB 00:00 (16/24): annobin-12.65-1.el9.x86_64.rpm 5.7 MB/s | 1.0 MB 00:00 (17/24): glibc-headers-2.34-125.el9_5.1.x86_64. 3.8 MB/s | 543 kB 00:00 (18/24): cpp-11.5.0-2.el9.x86_64.rpm 30 MB/s | 11 MB 00:00 (19/24): python-rpm-macros-3.9-54.el9.noarch.rp 105 kB/s | 16 kB 00:00 (20/24): gcc-11.5.0-2.el9.x86_64.rpm 40 MB/s | 32 MB 00:00 (21/24): python3-devel-3.9.21-1.el9_5.x86_64.rp 2.5 MB/s | 249 kB 00:00 (22/24): pyproject-rpm-macros-1.12.0-1.el9.noar 423 kB/s | 43 kB 00:00 (23/24): kernel-headers-5.14.0-503.21.1.el9_5.x 17 MB/s | 3.7 MB 00:00 (24/24): llvm-libs-18.1.8-3.el9.x86_64.rpm 47 MB/s | 26 MB 00:00 -------------------------------------------------------------------------------- Total 44 MB/s | 86 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python-rpm-macros-3.9-54.el9.noarch 1/24 Installing : python3-rpm-macros-3.9-54.el9.noarch 2/24 Installing : libmpc-1.2.1-4.el9.x86_64 3/24 Installing : cpp-11.5.0-2.el9.x86_64 4/24 Installing : kernel-headers-5.14.0-503.21.1.el9_5.x86_64 5/24 Installing : glibc-headers-2.34-125.el9_5.1.x86_64 6/24 Installing : glibc-devel-2.34-125.el9_5.1.x86_64 7/24 Installing : libxcrypt-devel-4.4.18-3.el9.x86_64 8/24 Installing : expat-2.5.0-3.el9_5.1.x86_64 9/24 Installing : python3-setuptools-wheel-53.0.0-13.el9.noarch 10/24 Installing : python3-pip-wheel-21.3.1-1.el9.noarch 11/24 Installing : python3-3.9.21-1.el9_5.x86_64 12/24 Installing : python3-libs-3.9.21-1.el9_5.x86_64 13/24 Installing : python3-packaging-23.1-1.el9.noarch 14/24 Installing : python3-rpm-generators-12-9.el9.noarch 15/24 Installing : python3-setuptools-69.0.2-1.el9.noarch 16/24 Installing : make-1:4.3-8.el9.x86_64 17/24 Installing : gcc-11.5.0-2.el9.x86_64 18/24 Running scriptlet: gcc-11.5.0-2.el9.x86_64 18/24 Installing : libedit-3.1-38.20210216cvs.el9.x86_64 19/24 Installing : llvm-libs-18.1.8-3.el9.x86_64 20/24 Installing : annobin-12.65-1.el9.x86_64 21/24 Running scriptlet: annobin-12.65-1.el9.x86_64 21/24 Installing : gcc-plugin-annobin-11.5.0-2.el9.x86_64 22/24 Running scriptlet: gcc-plugin-annobin-11.5.0-2.el9.x86_64 22/24 Installing : python3-devel-3.9.21-1.el9_5.x86_64 23/24 Installing : pyproject-rpm-macros-1.12.0-1.el9.noarch 24/24 Running scriptlet: pyproject-rpm-macros-1.12.0-1.el9.noarch 24/24 Verifying : python3-packaging-23.1-1.el9.noarch 1/24 Verifying : python3-setuptools-69.0.2-1.el9.noarch 2/24 Verifying : libedit-3.1-38.20210216cvs.el9.x86_64 3/24 Verifying : make-1:4.3-8.el9.x86_64 4/24 Verifying : python3-pip-wheel-21.3.1-1.el9.noarch 5/24 Verifying : python3-setuptools-wheel-53.0.0-13.el9.noarch 6/24 Verifying : expat-2.5.0-3.el9_5.1.x86_64 7/24 Verifying : python3-3.9.21-1.el9_5.x86_64 8/24 Verifying : python3-libs-3.9.21-1.el9_5.x86_64 9/24 Verifying : libmpc-1.2.1-4.el9.x86_64 10/24 Verifying : libxcrypt-devel-4.4.18-3.el9.x86_64 11/24 Verifying : python3-rpm-generators-12-9.el9.noarch 12/24 Verifying : gcc-11.5.0-2.el9.x86_64 13/24 Verifying : gcc-plugin-annobin-11.5.0-2.el9.x86_64 14/24 Verifying : glibc-devel-2.34-125.el9_5.1.x86_64 15/24 Verifying : python3-rpm-macros-3.9-54.el9.noarch 16/24 Verifying : annobin-12.65-1.el9.x86_64 17/24 Verifying : cpp-11.5.0-2.el9.x86_64 18/24 Verifying : glibc-headers-2.34-125.el9_5.1.x86_64 19/24 Verifying : llvm-libs-18.1.8-3.el9.x86_64 20/24 Verifying : python-rpm-macros-3.9-54.el9.noarch 21/24 Verifying : python3-devel-3.9.21-1.el9_5.x86_64 22/24 Verifying : kernel-headers-5.14.0-503.21.1.el9_5.x86_64 23/24 Verifying : pyproject-rpm-macros-1.12.0-1.el9.noarch 24/24 Installed products updated. Installed: annobin-12.65-1.el9.x86_64 cpp-11.5.0-2.el9.x86_64 expat-2.5.0-3.el9_5.1.x86_64 gcc-11.5.0-2.el9.x86_64 gcc-plugin-annobin-11.5.0-2.el9.x86_64 glibc-devel-2.34-125.el9_5.1.x86_64 glibc-headers-2.34-125.el9_5.1.x86_64 kernel-headers-5.14.0-503.21.1.el9_5.x86_64 libedit-3.1-38.20210216cvs.el9.x86_64 libmpc-1.2.1-4.el9.x86_64 libxcrypt-devel-4.4.18-3.el9.x86_64 llvm-libs-18.1.8-3.el9.x86_64 make-1:4.3-8.el9.x86_64 pyproject-rpm-macros-1.12.0-1.el9.noarch python-rpm-macros-3.9-54.el9.noarch python3-3.9.21-1.el9_5.x86_64 python3-devel-3.9.21-1.el9_5.x86_64 python3-libs-3.9.21-1.el9_5.x86_64 python3-packaging-23.1-1.el9.noarch python3-pip-wheel-21.3.1-1.el9.noarch python3-rpm-generators-12-9.el9.noarch python3-rpm-macros-3.9-54.el9.noarch python3-setuptools-69.0.2-1.el9.noarch python3-setuptools-wheel-53.0.0-13.el9.noarch Complete! Finish: build setup for python-biopython-1.85-1.el9.src.rpm Start: rpmbuild python-biopython-1.85-1.el9.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736899200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.vCOVja + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf biopython-1.85 + /usr/bin/gzip -dc /builddir/build/SOURCES/biopython-1.85.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd biopython-1.85 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.YRPP3S + umask 022 + cd /builddir/build/BUILD + cd biopython-1.85 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/biopython-1.85/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/biopython-1.85/.pyproject-builddir + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/biopython-1.85/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.2) Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.85-1.el9.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 31 kB/s | 1.5 kB 00:00 Red Hat Enterprise Linux - BaseOS 22 kB/s | 4.1 kB 00:00 Red Hat Enterprise Linux - AppStream 22 kB/s | 4.5 kB 00:00 Red Hat Enterprise Linux - CodeReady Linux Buil 21 kB/s | 4.5 kB 00:00 Extra Packages for Enterprise Linux 9 - x86_64 1.0 MB/s | 38 kB 00:00 Package gcc-11.5.0-2.el9.x86_64 is already installed. Package pyproject-rpm-macros-1.12.0-1.el9.noarch is already installed. Package python3-devel-3.9.21-1.el9_5.x86_64 is already installed. Package python3-devel-3.9.21-1.el9_5.x86_64 is already installed. Package python3-packaging-23.1-1.el9.noarch is already installed. Package python3-setuptools-69.0.2-1.el9.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-pip noarch 22.0.4-1.el9 copr_base 2.7 M python3-wheel noarch 1:0.36.2-8.el9 codeready-builder 87 k Transaction Summary ================================================================================ Install 2 Packages Total download size: 2.7 M Installed size: 13 M Downloading Packages: (1/2): python3-pip-22.0.4-1.el9.noarch.rpm 25 MB/s | 2.7 MB 00:00 (2/2): python3-wheel-0.36.2-8.el9.noarch.rpm 270 kB/s | 87 kB 00:00 -------------------------------------------------------------------------------- Total 8.4 MB/s | 2.7 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-wheel-1:0.36.2-8.el9.noarch 1/2 Installing : python3-pip-22.0.4-1.el9.noarch 2/2 Running scriptlet: python3-pip-22.0.4-1.el9.noarch 2/2 Verifying : python3-pip-22.0.4-1.el9.noarch 1/2 Verifying : python3-wheel-1:0.36.2-8.el9.noarch 2/2 Installed products updated. Installed: python3-pip-22.0.4-1.el9.noarch python3-wheel-1:0.36.2-8.el9.noarch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736899200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.M5upSK + umask 022 + cd /builddir/build/BUILD + cd biopython-1.85 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/biopython-1.85/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/biopython-1.85/.pyproject-builddir + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/biopython-1.85/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.36.2) WARNING: Biopython support for Python 3.9 is now deprecated. running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.36.2) WARNING: Biopython support for Python 3.9 is now deprecated. running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/biopython-1.85/biopython-1.85.dist-info' adding license file "LICENSE" (matched pattern "LICEN[CS]E*") adding license file "LICENSE.rst" (matched pattern "LICEN[CS]E*") Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement not satisfied: numpy + cat /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-buildrequires + rm -rfv biopython-1.85.dist-info/ removed 'biopython-1.85.dist-info/top_level.txt' removed 'biopython-1.85.dist-info/METADATA' removed 'biopython-1.85.dist-info/LICENSE.rst' removed 'biopython-1.85.dist-info/LICENSE' removed directory 'biopython-1.85.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.85-1.el9.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 26 kB/s | 1.5 kB 00:00 Red Hat Enterprise Linux - BaseOS 20 kB/s | 4.1 kB 00:00 Red Hat Enterprise Linux - AppStream 22 kB/s | 4.5 kB 00:00 Red Hat Enterprise Linux - CodeReady Linux Buil 22 kB/s | 4.5 kB 00:00 Extra Packages for Enterprise Linux 9 - x86_64 1.0 MB/s | 38 kB 00:00 Package gcc-11.5.0-2.el9.x86_64 is already installed. Package pyproject-rpm-macros-1.12.0-1.el9.noarch is already installed. Package python3-devel-3.9.21-1.el9_5.x86_64 is already installed. Package python3-devel-3.9.21-1.el9_5.x86_64 is already installed. Package python3-packaging-23.1-1.el9.noarch is already installed. Package python3-pip-22.0.4-1.el9.noarch is already installed. Package python3-setuptools-69.0.2-1.el9.noarch is already installed. Package python3-wheel-1:0.36.2-8.el9.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-numpy x86_64 1:1.20.1-5.el9 appstream 5.1 M Installing dependencies: flexiblas x86_64 3.0.4-8.el9 appstream 34 k flexiblas-netlib x86_64 3.0.4-8.el9 appstream 3.0 M flexiblas-openblas-openmp x86_64 3.0.4-8.el9 appstream 19 k libgfortran x86_64 11.5.0-2.el9 baseos 802 k libquadmath x86_64 11.5.0-2.el9 baseos 193 k openblas x86_64 0.3.26-2.el9 appstream 41 k openblas-openmp x86_64 0.3.26-2.el9 appstream 4.9 M Transaction Summary ================================================================================ Install 8 Packages Total download size: 14 M Installed size: 80 M Downloading Packages: (1/8): flexiblas-openblas-openmp-3.0.4-8.el9.x8 87 kB/s | 19 kB 00:00 (2/8): libquadmath-11.5.0-2.el9.x86_64.rpm 749 kB/s | 193 kB 00:00 (3/8): libgfortran-11.5.0-2.el9.x86_64.rpm 2.4 MB/s | 802 kB 00:00 (4/8): flexiblas-3.0.4-8.el9.x86_64.rpm 226 kB/s | 34 kB 00:00 (5/8): openblas-0.3.26-2.el9.x86_64.rpm 144 kB/s | 41 kB 00:00 (6/8): flexiblas-netlib-3.0.4-8.el9.x86_64.rpm 7.9 MB/s | 3.0 MB 00:00 (7/8): python3-numpy-1.20.1-5.el9.x86_64.rpm 9.9 MB/s | 5.1 MB 00:00 (8/8): openblas-openmp-0.3.26-2.el9.x86_64.rpm 18 MB/s | 4.9 MB 00:00 -------------------------------------------------------------------------------- Total 15 MB/s | 14 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : flexiblas-3.0.4-8.el9.x86_64 1/8 Installing : libquadmath-11.5.0-2.el9.x86_64 2/8 Installing : libgfortran-11.5.0-2.el9.x86_64 3/8 Installing : openblas-0.3.26-2.el9.x86_64 4/8 Installing : openblas-openmp-0.3.26-2.el9.x86_64 5/8 Installing : flexiblas-openblas-openmp-3.0.4-8.el9.x86_64 6/8 Installing : flexiblas-netlib-3.0.4-8.el9.x86_64 7/8 Installing : python3-numpy-1:1.20.1-5.el9.x86_64 8/8 Running scriptlet: python3-numpy-1:1.20.1-5.el9.x86_64 8/8 Verifying : libgfortran-11.5.0-2.el9.x86_64 1/8 Verifying : libquadmath-11.5.0-2.el9.x86_64 2/8 Verifying : flexiblas-openblas-openmp-3.0.4-8.el9.x86_64 3/8 Verifying : flexiblas-3.0.4-8.el9.x86_64 4/8 Verifying : python3-numpy-1:1.20.1-5.el9.x86_64 5/8 Verifying : flexiblas-netlib-3.0.4-8.el9.x86_64 6/8 Verifying : openblas-0.3.26-2.el9.x86_64 7/8 Verifying : openblas-openmp-0.3.26-2.el9.x86_64 8/8 Installed products updated. Installed: flexiblas-3.0.4-8.el9.x86_64 flexiblas-netlib-3.0.4-8.el9.x86_64 flexiblas-openblas-openmp-3.0.4-8.el9.x86_64 libgfortran-11.5.0-2.el9.x86_64 libquadmath-11.5.0-2.el9.x86_64 openblas-0.3.26-2.el9.x86_64 openblas-openmp-0.3.26-2.el9.x86_64 python3-numpy-1:1.20.1-5.el9.x86_64 Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736899200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Z8kgby + umask 022 + cd /builddir/build/BUILD + cd biopython-1.85 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/biopython-1.85/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/biopython-1.85/.pyproject-builddir + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/biopython-1.85/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.36.2) WARNING: Biopython support for Python 3.9 is now deprecated. running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.36.2) WARNING: Biopython support for Python 3.9 is now deprecated. running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/biopython-1.85/biopython-1.85.dist-info' adding license file "LICENSE" (matched pattern "LICEN[CS]E*") adding license file "LICENSE.rst" (matched pattern "LICEN[CS]E*") Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement satisfied: numpy (installed: numpy 1.20.1) + cat /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-buildrequires + rm -rfv biopython-1.85.dist-info/ removed 'biopython-1.85.dist-info/top_level.txt' removed 'biopython-1.85.dist-info/METADATA' removed 'biopython-1.85.dist-info/LICENSE.rst' removed 'biopython-1.85.dist-info/LICENSE' removed directory 'biopython-1.85.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-biopython-1.85-1.el9.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 26 kB/s | 1.5 kB 00:00 Red Hat Enterprise Linux - BaseOS 24 kB/s | 4.1 kB 00:00 Red Hat Enterprise Linux - AppStream 19 kB/s | 4.5 kB 00:00 Red Hat Enterprise Linux - CodeReady Linux Buil 29 kB/s | 4.5 kB 00:00 Extra Packages for Enterprise Linux 9 - x86_64 1.1 MB/s | 38 kB 00:00 Package gcc-11.5.0-2.el9.x86_64 is already installed. Package pyproject-rpm-macros-1.12.0-1.el9.noarch is already installed. Package python3-devel-3.9.21-1.el9_5.x86_64 is already installed. Package python3-devel-3.9.21-1.el9_5.x86_64 is already installed. Package python3-numpy-1:1.20.1-5.el9.x86_64 is already installed. Package python3-packaging-23.1-1.el9.noarch is already installed. Package python3-pip-22.0.4-1.el9.noarch is already installed. Package python3-setuptools-69.0.2-1.el9.noarch is already installed. Package python3-wheel-1:0.36.2-8.el9.noarch is already installed. Dependencies resolved. Nothing to do. Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1736899200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.QEUIti + umask 022 + cd /builddir/build/BUILD + cd biopython-1.85 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/biopython-1.85/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/biopython-1.85/.pyproject-builddir + RPM_TOXENV=py39 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/biopython-1.85/pyproject-wheeldir --output /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.0.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.36.2) WARNING: Biopython support for Python 3.9 is now deprecated. running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.36.2) WARNING: Biopython support for Python 3.9 is now deprecated. running dist_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/biopython-1.85/biopython-1.85.dist-info' adding license file "LICENSE" (matched pattern "LICEN[CS]E*") adding license file "LICENSE.rst" (matched pattern "LICEN[CS]E*") Handling numpy from hook generated metadata: Requires-Dist (biopython) Requirement satisfied: numpy (installed: numpy 1.20.1) + cat /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-buildrequires + rm -rfv biopython-1.85.dist-info/ removed 'biopython-1.85.dist-info/top_level.txt' removed 'biopython-1.85.dist-info/METADATA' removed 'biopython-1.85.dist-info/LICENSE' removed 'biopython-1.85.dist-info/LICENSE.rst' removed directory 'biopython-1.85.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.gO0kdF + umask 022 + cd /builddir/build/BUILD + cd biopython-1.85 + mkdir -p /builddir/build/BUILD/biopython-1.85/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + TMPDIR=/builddir/build/BUILD/biopython-1.85/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/biopython-1.85/pyproject-wheeldir Processing /builddir/build/BUILD/biopython-1.85 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) WARNING: Biopython support for Python 3.9 is now deprecated. running dist_info creating /builddir/build/BUILD/biopython-1.85/.pyproject-builddir/pip-modern-metadata-rzr2mw6k/biopython.egg-info writing /builddir/build/BUILD/biopython-1.85/.pyproject-builddir/pip-modern-metadata-rzr2mw6k/biopython.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/biopython-1.85/.pyproject-builddir/pip-modern-metadata-rzr2mw6k/biopython.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/biopython-1.85/.pyproject-builddir/pip-modern-metadata-rzr2mw6k/biopython.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/biopython-1.85/.pyproject-builddir/pip-modern-metadata-rzr2mw6k/biopython.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/biopython-1.85/.pyproject-builddir/pip-modern-metadata-rzr2mw6k/biopython.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/biopython-1.85/.pyproject-builddir/pip-modern-metadata-rzr2mw6k/biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file '/builddir/build/BUILD/biopython-1.85/.pyproject-builddir/pip-modern-metadata-rzr2mw6k/biopython.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/biopython-1.85/.pyproject-builddir/pip-modern-metadata-rzr2mw6k/biopython-1.85.dist-info' adding license file "LICENSE" (matched pattern "LICEN[CS]E*") adding license file "LICENSE.rst" (matched pattern "LICEN[CS]E*") Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: biopython Building wheel for biopython (pyproject.toml): started Running command Building wheel for biopython (pyproject.toml) WARNING: Biopython support for Python 3.9 is now deprecated. running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-39 creating build/lib.linux-x86_64-cpython-39/Bio copying Bio/File.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/LogisticRegression.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/MarkovModel.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/MaxEntropy.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/NaiveBayes.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/kNN.py -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-39/Bio creating build/lib.linux-x86_64-cpython-39/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-39/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Affy creating build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-39/Bio/Align creating build/lib.linux-x86_64-cpython-39/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-x86_64-cpython-39/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-x86_64-cpython-39/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-x86_64-cpython-39/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-x86_64-cpython-39/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-x86_64-cpython-39/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-x86_64-cpython-39/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> build/lib.linux-x86_64-cpython-39/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-x86_64-cpython-39/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-x86_64-cpython-39/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Align/Applications creating build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices creating build/lib.linux-x86_64-cpython-39/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-39/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-39/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-39/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-39/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-39/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-39/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-39/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-39/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-39/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-39/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/AlignIO creating build/lib.linux-x86_64-cpython-39/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Alphabet creating build/lib.linux-x86_64-cpython-39/Bio/Application copying Bio/Application/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Application creating build/lib.linux-x86_64-cpython-39/Bio/Blast copying Bio/Blast/Applications.py -> build/lib.linux-x86_64-cpython-39/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-39/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-39/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Blast copying Bio/Blast/_parser.py -> build/lib.linux-x86_64-cpython-39/Bio/Blast copying Bio/Blast/_writers.py -> build/lib.linux-x86_64-cpython-39/Bio/Blast creating build/lib.linux-x86_64-cpython-39/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/CAPS creating build/lib.linux-x86_64-cpython-39/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Cluster creating build/lib.linux-x86_64-cpython-39/Bio/codonalign copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/codonalign copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-39/Bio/codonalign copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-39/Bio/codonalign creating build/lib.linux-x86_64-cpython-39/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Compass creating build/lib.linux-x86_64-cpython-39/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-39/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-39/Bio/Data copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-39/Bio/Data copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Data creating build/lib.linux-x86_64-cpython-39/Bio/Emboss copying Bio/Emboss/Applications.py -> build/lib.linux-x86_64-cpython-39/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-39/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-39/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Emboss creating build/lib.linux-x86_64-cpython-39/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-39/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Entrez creating build/lib.linux-x86_64-cpython-39/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-39/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-39/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-39/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-39/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-39/Bio/ExPASy creating build/lib.linux-x86_64-cpython-39/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-39/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-39/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-39/Bio/GenBank creating build/lib.linux-x86_64-cpython-39/Bio/Geo copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-39/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Geo creating build/lib.linux-x86_64-cpython-39/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics creating build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram creating build/lib.linux-x86_64-cpython-39/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-x86_64-cpython-39/Bio/HMM copying Bio/HMM/MarkovModel.py -> build/lib.linux-x86_64-cpython-39/Bio/HMM copying Bio/HMM/Trainer.py -> build/lib.linux-x86_64-cpython-39/Bio/HMM copying Bio/HMM/Utilities.py -> build/lib.linux-x86_64-cpython-39/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/HMM creating build/lib.linux-x86_64-cpython-39/Bio/KEGG copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-39/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/KEGG creating build/lib.linux-x86_64-cpython-39/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/KEGG/Compound creating build/lib.linux-x86_64-cpython-39/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/KEGG/Enzyme creating build/lib.linux-x86_64-cpython-39/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/KEGG/Gene creating build/lib.linux-x86_64-cpython-39/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/KEGG/Map creating build/lib.linux-x86_64-cpython-39/Bio/PDB creating build/lib.linux-x86_64-cpython-39/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB/mmtf creating build/lib.linux-x86_64-cpython-39/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-39/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-39/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/KEGG/KGML creating build/lib.linux-x86_64-cpython-39/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Medline creating build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs creating build/lib.linux-x86_64-cpython-39/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs/applications creating build/lib.linux-x86_64-cpython-39/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-39/Bio/motifs/jaspar creating build/lib.linux-x86_64-cpython-39/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-39/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-39/Bio/Nexus copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-39/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-39/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Nexus creating build/lib.linux-x86_64-cpython-39/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-39/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-39/Bio/NMR creating build/lib.linux-x86_64-cpython-39/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Pathway creating build/lib.linux-x86_64-cpython-39/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-39/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-39/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Pathway/Rep copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/PDBMLParser.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/alphafold_db.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/binary_cif.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-39/Bio/PDB creating build/lib.linux-x86_64-cpython-39/Bio/phenotype copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/phenotype copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-39/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-39/Bio/phenotype creating build/lib.linux-x86_64-cpython-39/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/PopGen creating build/lib.linux-x86_64-cpython-39/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-x86_64-cpython-39/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-x86_64-cpython-39/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-39/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-39/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/PopGen/GenePop creating build/lib.linux-x86_64-cpython-39/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-39/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-39/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-39/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Restriction creating build/lib.linux-x86_64-cpython-39/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-39/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-39/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-39/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-39/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-39/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-39/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SCOP creating build/lib.linux-x86_64-cpython-39/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO creating build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_model creating build/lib.linux-x86_64-cpython-39/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/BlastIO creating build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HHsuiteIO creating build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO creating build/lib.linux-x86_64-cpython-39/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/ExonerateIO creating build/lib.linux-x86_64-cpython-39/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-39/Bio/SearchIO/InterproscanIO creating build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO creating build/lib.linux-x86_64-cpython-39/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-39/Bio/SeqUtils creating build/lib.linux-x86_64-cpython-39/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-39/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-39/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Sequencing creating build/lib.linux-x86_64-cpython-39/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-x86_64-cpython-39/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-x86_64-cpython-39/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-x86_64-cpython-39/Bio/Sequencing/Applications creating build/lib.linux-x86_64-cpython-39/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SVDSuperimposer creating build/lib.linux-x86_64-cpython-39/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-39/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/SwissProt creating build/lib.linux-x86_64-cpython-39/Bio/TogoWS copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/TogoWS creating build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo creating build/lib.linux-x86_64-cpython-39/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/Applications creating build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML creating build/lib.linux-x86_64-cpython-39/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/UniGene creating build/lib.linux-x86_64-cpython-39/Bio/UniProt copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-39/Bio/UniProt copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-39/Bio/UniProt creating build/lib.linux-x86_64-cpython-39/BioSQL copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-39/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-39/BioSQL copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-39/BioSQL copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-39/BioSQL copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-39/BioSQL running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/py.typed -> build/lib.linux-x86_64-cpython-39/Bio copying Bio/Align/_aligncore.c -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-39/Bio/Align copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-39/Bio/Align creating build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-39/Bio/Cluster copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-39/Bio/Cluster copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-39/Bio/Cluster creating build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs creating build/lib.linux-x86_64-cpython-39/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-x86_64-cpython-39/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-39/Bio/motifs copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-39/Bio/Nexus copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-39/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-39/Bio/SeqIO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-39/BioSQL running build_ext building 'Bio.Align._codonaligner' extension creating build/temp.linux-x86_64-cpython-39 creating build/temp.linux-x86_64-cpython-39/Bio creating build/temp.linux-x86_64-cpython-39/Bio/Align gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-39/Bio/Align/_codonaligner.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-39/Bio/Align/_codonaligner.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-39/Bio/Align/_codonaligner.cpython-39-x86_64-linux-gnu.so building 'Bio.Align._pairwisealigner' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-39/Bio/Align/_pairwisealigner.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-39/Bio/Align/_pairwisealigner.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-39/Bio/Align/_pairwisealigner.cpython-39-x86_64-linux-gnu.so building 'Bio.Align._aligncore' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/Align/_aligncore.c -o build/temp.linux-x86_64-cpython-39/Bio/Align/_aligncore.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-39/Bio/Align/_aligncore.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-39/Bio/Align/_aligncore.cpython-39-x86_64-linux-gnu.so building 'Bio.cpairwise2' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-39/Bio/cpairwise2module.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-39/Bio/cpairwise2module.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-39/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-x86_64-cpython-39/Bio/Nexus gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-39/Bio/Nexus/cnexus.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-39/Bio/Nexus/cnexus.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-39/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-x86_64-cpython-39/Bio/motifs gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-39/Bio/motifs/_pwm.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-39/Bio/motifs/_pwm.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-39/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-x86_64-cpython-39/Bio/Cluster gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-39/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-39/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-39/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-39/Bio/Cluster/clustermodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-39/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so building 'Bio.PDB.ccealign' extension creating build/temp.linux-x86_64-cpython-39/Bio/PDB gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-39/Bio/PDB/ccealignmodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-39/Bio/PDB/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-39/Bio/PDB/ccealign.cpython-39-x86_64-linux-gnu.so building 'Bio.PDB.kdtrees' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-39/Bio/PDB/kdtrees.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-39/Bio/PDB/kdtrees.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-39/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so building 'Bio.PDB._bcif_helper' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-x86_64-cpython-39/Bio/PDB/bcifhelpermodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-39/Bio/PDB/bcifhelpermodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-39/Bio/PDB/_bcif_helper.cpython-39-x86_64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-x86_64-cpython-39/Bio/SeqIO gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.9 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-39/Bio/SeqIO/_twoBitIO.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-39/Bio/SeqIO/_twoBitIO.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-39/Bio/SeqIO/_twoBitIO.cpython-39-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/File.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/LogisticRegression.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/MarkovModel.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/MaxEntropy.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/NaiveBayes.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/kNN.py -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/Bio creating build/bdist.linux-x86_64/wheel/Bio/Affy copying build/lib.linux-x86_64-cpython-39/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/Bio/Affy copying build/lib.linux-x86_64-cpython-39/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Affy creating build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/Bio/Align creating build/bdist.linux-x86_64/wheel/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Align/Applications/_Prank.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Align/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data copying build/lib.linux-x86_64-cpython-39/Bio/Align/_aligncore.c -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/_codonaligner.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/_pairwisealigner.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Align copying build/lib.linux-x86_64-cpython-39/Bio/Align/_aligncore.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Align creating build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-39/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-39/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-39/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-39/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-39/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-39/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-39/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-39/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-39/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-39/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO copying build/lib.linux-x86_64-cpython-39/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO creating build/bdist.linux-x86_64/wheel/Bio/Alphabet copying build/lib.linux-x86_64-cpython-39/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Alphabet creating build/bdist.linux-x86_64/wheel/Bio/Application copying build/lib.linux-x86_64-cpython-39/Bio/Application/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Application creating build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-39/Bio/Blast/Applications.py -> build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-39/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-39/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-39/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-39/Bio/Blast/_parser.py -> build/bdist.linux-x86_64/wheel/Bio/Blast copying build/lib.linux-x86_64-cpython-39/Bio/Blast/_writers.py -> build/bdist.linux-x86_64/wheel/Bio/Blast creating build/bdist.linux-x86_64/wheel/Bio/CAPS copying build/lib.linux-x86_64-cpython-39/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/CAPS creating build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-39/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-39/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-39/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-39/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster copying build/lib.linux-x86_64-cpython-39/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Cluster creating build/bdist.linux-x86_64/wheel/Bio/codonalign copying build/lib.linux-x86_64-cpython-39/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign copying build/lib.linux-x86_64-cpython-39/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign copying build/lib.linux-x86_64-cpython-39/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign creating build/bdist.linux-x86_64/wheel/Bio/Compass copying build/lib.linux-x86_64-cpython-39/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Compass creating build/bdist.linux-x86_64/wheel/Bio/Data copying build/lib.linux-x86_64-cpython-39/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/Bio/Data copying build/lib.linux-x86_64-cpython-39/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/Bio/Data copying build/lib.linux-x86_64-cpython-39/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/Bio/Data copying build/lib.linux-x86_64-cpython-39/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Data creating build/bdist.linux-x86_64/wheel/Bio/Emboss copying build/lib.linux-x86_64-cpython-39/Bio/Emboss/Applications.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss copying build/lib.linux-x86_64-cpython-39/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss copying build/lib.linux-x86_64-cpython-39/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss copying build/lib.linux-x86_64-cpython-39/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss creating build/bdist.linux-x86_64/wheel/Bio/Entrez copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs copying build/lib.linux-x86_64-cpython-39/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs creating build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-39/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-39/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-39/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-39/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-39/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy copying build/lib.linux-x86_64-cpython-39/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy creating build/bdist.linux-x86_64/wheel/Bio/GenBank copying build/lib.linux-x86_64-cpython-39/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank copying build/lib.linux-x86_64-cpython-39/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank copying build/lib.linux-x86_64-cpython-39/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank copying build/lib.linux-x86_64-cpython-39/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank creating build/bdist.linux-x86_64/wheel/Bio/Geo copying build/lib.linux-x86_64-cpython-39/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/Bio/Geo copying build/lib.linux-x86_64-cpython-39/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Geo creating build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram copying build/lib.linux-x86_64-cpython-39/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram creating build/bdist.linux-x86_64/wheel/Bio/HMM copying build/lib.linux-x86_64-cpython-39/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-x86_64/wheel/Bio/HMM copying build/lib.linux-x86_64-cpython-39/Bio/HMM/MarkovModel.py -> build/bdist.linux-x86_64/wheel/Bio/HMM copying build/lib.linux-x86_64-cpython-39/Bio/HMM/Trainer.py -> build/bdist.linux-x86_64/wheel/Bio/HMM copying build/lib.linux-x86_64-cpython-39/Bio/HMM/Utilities.py -> build/bdist.linux-x86_64/wheel/Bio/HMM copying build/lib.linux-x86_64-cpython-39/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/HMM creating build/bdist.linux-x86_64/wheel/Bio/KEGG copying build/lib.linux-x86_64-cpython-39/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG copying build/lib.linux-x86_64-cpython-39/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound copying build/lib.linux-x86_64-cpython-39/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme copying build/lib.linux-x86_64-cpython-39/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene copying build/lib.linux-x86_64-cpython-39/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map copying build/lib.linux-x86_64-cpython-39/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Map creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-39/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-39/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML copying build/lib.linux-x86_64-cpython-39/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML creating build/bdist.linux-x86_64/wheel/Bio/PDB creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-39/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-39/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-39/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf copying build/lib.linux-x86_64-cpython-39/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/PDBMLParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/alphafold_db.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/binary_cif.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/ccealign.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/PDB copying build/lib.linux-x86_64-cpython-39/Bio/PDB/_bcif_helper.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/PDB creating build/bdist.linux-x86_64/wheel/Bio/Medline copying build/lib.linux-x86_64-cpython-39/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Medline creating build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/Bio/motifs creating build/bdist.linux-x86_64/wheel/Bio/motifs/applications copying build/lib.linux-x86_64-cpython-39/Bio/motifs/applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/applications copying build/lib.linux-x86_64-cpython-39/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/applications creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-39/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-39/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar copying build/lib.linux-x86_64-cpython-39/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/Bio/motifs copying build/lib.linux-x86_64-cpython-39/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/motifs creating build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-39/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-39/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-39/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-39/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-39/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-39/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/Bio/Nexus copying build/lib.linux-x86_64-cpython-39/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/Nexus creating build/bdist.linux-x86_64/wheel/Bio/NMR copying build/lib.linux-x86_64-cpython-39/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR copying build/lib.linux-x86_64-cpython-39/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/NMR copying build/lib.linux-x86_64-cpython-39/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR creating build/bdist.linux-x86_64/wheel/Bio/Pathway copying build/lib.linux-x86_64-cpython-39/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-39/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-39/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep copying build/lib.linux-x86_64-cpython-39/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep creating build/bdist.linux-x86_64/wheel/Bio/phenotype copying build/lib.linux-x86_64-cpython-39/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype copying build/lib.linux-x86_64-cpython-39/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype copying build/lib.linux-x86_64-cpython-39/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype creating build/bdist.linux-x86_64/wheel/Bio/PopGen copying build/lib.linux-x86_64-cpython-39/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-39/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-39/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-39/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-39/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop copying build/lib.linux-x86_64-cpython-39/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop creating build/bdist.linux-x86_64/wheel/Bio/Restriction copying build/lib.linux-x86_64-cpython-39/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction copying build/lib.linux-x86_64-cpython-39/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction copying build/lib.linux-x86_64-cpython-39/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction copying build/lib.linux-x86_64-cpython-39/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction creating build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-39/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-39/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-39/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-39/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-39/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-39/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP copying build/lib.linux-x86_64-cpython-39/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP creating build/bdist.linux-x86_64/wheel/Bio/SearchIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO copying build/lib.linux-x86_64-cpython-39/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO creating build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/GfaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/Bio/SeqIO copying build/lib.linux-x86_64-cpython-39/Bio/SeqIO/_twoBitIO.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio/SeqIO creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-39/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-39/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-39/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-39/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-39/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-39/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils copying build/lib.linux-x86_64-cpython-39/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils creating build/bdist.linux-x86_64/wheel/Bio/Sequencing copying build/lib.linux-x86_64-cpython-39/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing copying build/lib.linux-x86_64-cpython-39/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing copying build/lib.linux-x86_64-cpython-39/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing creating build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer copying build/lib.linux-x86_64-cpython-39/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer creating build/bdist.linux-x86_64/wheel/Bio/SwissProt copying build/lib.linux-x86_64-cpython-39/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt copying build/lib.linux-x86_64-cpython-39/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt creating build/bdist.linux-x86_64/wheel/Bio/TogoWS copying build/lib.linux-x86_64-cpython-39/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/TogoWS creating build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo creating build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML copying build/lib.linux-x86_64-cpython-39/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML creating build/bdist.linux-x86_64/wheel/Bio/UniGene copying build/lib.linux-x86_64-cpython-39/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniGene creating build/bdist.linux-x86_64/wheel/Bio/UniProt copying build/lib.linux-x86_64-cpython-39/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt copying build/lib.linux-x86_64-cpython-39/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt copying build/lib.linux-x86_64-cpython-39/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/py.typed -> build/bdist.linux-x86_64/wheel/Bio copying build/lib.linux-x86_64-cpython-39/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/Bio creating build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-39/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-39/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-39/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-39/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-39/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/BioSQL copying build/lib.linux-x86_64-cpython-39/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/BioSQL running install_egg_info Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/biopython-1.85-py3.9.egg-info running install_scripts adding license file "LICENSE" (matched pattern "LICEN[CS]E*") adding license file "LICENSE.rst" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-x86_64/wheel/biopython-1.85.dist-info/WHEEL creating '/builddir/build/BUILD/biopython-1.85/.pyproject-builddir/pip-wheel-t9qgp665/.tmp-yqyvn7lc/biopython-1.85-cp39-cp39-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'Bio/File.py' adding 'Bio/LogisticRegression.py' adding 'Bio/MarkovModel.py' adding 'Bio/MaxEntropy.py' adding 'Bio/NaiveBayes.py' adding 'Bio/Seq.py' adding 'Bio/SeqFeature.py' adding 'Bio/SeqRecord.py' adding 'Bio/__init__.py' adding 'Bio/_utils.py' adding 'Bio/bgzf.py' adding 'Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so' adding 'Bio/cpairwise2module.c' adding 'Bio/kNN.py' adding 'Bio/pairwise2.py' adding 'Bio/py.typed' adding 'Bio/Affy/CelFile.py' adding 'Bio/Affy/__init__.py' adding 'Bio/Align/AlignInfo.py' adding 'Bio/Align/__init__.py' adding 'Bio/Align/_aligncore.c' adding 'Bio/Align/_aligncore.cpython-39-x86_64-linux-gnu.so' adding 'Bio/Align/_codonaligner.c' adding 'Bio/Align/_codonaligner.cpython-39-x86_64-linux-gnu.so' adding 'Bio/Align/_pairwisealigner.c' adding 'Bio/Align/_pairwisealigner.cpython-39-x86_64-linux-gnu.so' adding 'Bio/Align/a2m.py' adding 'Bio/Align/analysis.py' adding 'Bio/Align/bed.py' adding 'Bio/Align/bigbed.py' adding 'Bio/Align/bigmaf.py' adding 'Bio/Align/bigpsl.py' adding 'Bio/Align/chain.py' adding 'Bio/Align/clustal.py' adding 'Bio/Align/emboss.py' adding 'Bio/Align/exonerate.py' adding 'Bio/Align/fasta.py' adding 'Bio/Align/hhr.py' adding 'Bio/Align/interfaces.py' adding 'Bio/Align/maf.py' adding 'Bio/Align/mauve.py' adding 'Bio/Align/msf.py' adding 'Bio/Align/nexus.py' adding 'Bio/Align/phylip.py' adding 'Bio/Align/psl.py' adding 'Bio/Align/sam.py' adding 'Bio/Align/stockholm.py' adding 'Bio/Align/tabular.py' adding 'Bio/Align/Applications/_ClustalOmega.py' adding 'Bio/Align/Applications/_Clustalw.py' adding 'Bio/Align/Applications/_Dialign.py' adding 'Bio/Align/Applications/_MSAProbs.py' adding 'Bio/Align/Applications/_Mafft.py' adding 'Bio/Align/Applications/_Muscle.py' adding 'Bio/Align/Applications/_Prank.py' adding 'Bio/Align/Applications/_Probcons.py' adding 'Bio/Align/Applications/_TCoffee.py' adding 'Bio/Align/Applications/__init__.py' adding 'Bio/Align/substitution_matrices/__init__.py' adding 'Bio/Align/substitution_matrices/data/BENNER22' adding 'Bio/Align/substitution_matrices/data/BENNER6' adding 'Bio/Align/substitution_matrices/data/BENNER74' adding 'Bio/Align/substitution_matrices/data/BLASTN' adding 'Bio/Align/substitution_matrices/data/BLASTP' adding 'Bio/Align/substitution_matrices/data/BLOSUM45' adding 'Bio/Align/substitution_matrices/data/BLOSUM50' adding 'Bio/Align/substitution_matrices/data/BLOSUM62' adding 'Bio/Align/substitution_matrices/data/BLOSUM80' adding 'Bio/Align/substitution_matrices/data/BLOSUM90' adding 'Bio/Align/substitution_matrices/data/DAYHOFF' adding 'Bio/Align/substitution_matrices/data/FENG' adding 'Bio/Align/substitution_matrices/data/GENETIC' adding 'Bio/Align/substitution_matrices/data/GONNET1992' adding 'Bio/Align/substitution_matrices/data/HOXD70' adding 'Bio/Align/substitution_matrices/data/JOHNSON' adding 'Bio/Align/substitution_matrices/data/JONES' adding 'Bio/Align/substitution_matrices/data/LEVIN' adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' adding 'Bio/Align/substitution_matrices/data/MDM78' adding 'Bio/Align/substitution_matrices/data/MEGABLAST' adding 'Bio/Align/substitution_matrices/data/NUC.4.4' adding 'Bio/Align/substitution_matrices/data/PAM250' adding 'Bio/Align/substitution_matrices/data/PAM30' adding 'Bio/Align/substitution_matrices/data/PAM70' adding 'Bio/Align/substitution_matrices/data/RAO' adding 'Bio/Align/substitution_matrices/data/RISLER' adding 'Bio/Align/substitution_matrices/data/SCHNEIDER' adding 'Bio/Align/substitution_matrices/data/STR' adding 'Bio/Align/substitution_matrices/data/TRANS' adding 'Bio/AlignIO/ClustalIO.py' adding 'Bio/AlignIO/EmbossIO.py' adding 'Bio/AlignIO/FastaIO.py' adding 'Bio/AlignIO/Interfaces.py' adding 'Bio/AlignIO/MafIO.py' adding 'Bio/AlignIO/MauveIO.py' adding 'Bio/AlignIO/MsfIO.py' adding 'Bio/AlignIO/NexusIO.py' adding 'Bio/AlignIO/PhylipIO.py' adding 'Bio/AlignIO/StockholmIO.py' adding 'Bio/AlignIO/__init__.py' adding 'Bio/Alphabet/__init__.py' adding 'Bio/Application/__init__.py' adding 'Bio/Blast/Applications.py' adding 'Bio/Blast/NCBIWWW.py' adding 'Bio/Blast/NCBIXML.py' adding 'Bio/Blast/__init__.py' adding 'Bio/Blast/_parser.py' adding 'Bio/Blast/_writers.py' adding 'Bio/CAPS/__init__.py' adding 'Bio/Cluster/__init__.py' adding 'Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so' adding 'Bio/Cluster/cluster.c' adding 'Bio/Cluster/cluster.h' adding 'Bio/Cluster/clustermodule.c' adding 'Bio/Compass/__init__.py' adding 'Bio/Data/CodonTable.py' adding 'Bio/Data/IUPACData.py' adding 'Bio/Data/PDBData.py' adding 'Bio/Data/__init__.py' adding 'Bio/Emboss/Applications.py' adding 'Bio/Emboss/Primer3.py' adding 'Bio/Emboss/PrimerSearch.py' adding 'Bio/Emboss/__init__.py' adding 'Bio/Entrez/Parser.py' adding 'Bio/Entrez/__init__.py' adding 'Bio/Entrez/DTDs/BITS-embedded-index2.ent' adding 'Bio/Entrez/DTDs/BITS-question-answer2.ent' adding 'Bio/Entrez/DTDs/Docsum_3_0.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_0.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_1.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_1.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_2.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_2.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_3.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_3.mod.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_4.dtd' adding 'Bio/Entrez/DTDs/Docsum_3_4.mod.dtd' adding 'Bio/Entrez/DTDs/EMBL_General.dtd' adding 'Bio/Entrez/DTDs/EMBL_General.mod.dtd' adding 'Bio/Entrez/DTDs/GenBank_General.dtd' adding 'Bio/Entrez/DTDs/GenBank_General.mod.dtd' adding 'Bio/Entrez/DTDs/HomoloGene.dtd' adding 'Bio/Entrez/DTDs/HomoloGene.mod.dtd' adding 'Bio/Entrez/DTDs/INSD_INSDSeq.dtd' adding 'Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd' adding 'Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent' adding 'Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent' adding 'Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd' adding 'Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent' adding 'Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent' adding 'Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent' adding 'Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent' adding 'Bio/Entrez/DTDs/JATS-articlemeta1-3.ent' adding 'Bio/Entrez/DTDs/JATS-backmatter1-3.ent' adding 'Bio/Entrez/DTDs/JATS-chars1-3.ent' adding 'Bio/Entrez/DTDs/JATS-common-atts1-3.ent' adding 'Bio/Entrez/DTDs/JATS-common1-3.ent' adding 'Bio/Entrez/DTDs/JATS-default-classes1-3.ent' adding 'Bio/Entrez/DTDs/JATS-default-mixes1-3.ent' adding 'Bio/Entrez/DTDs/JATS-display1-3.ent' adding 'Bio/Entrez/DTDs/JATS-format1-3.ent' adding 'Bio/Entrez/DTDs/JATS-funding1-3.ent' adding 'Bio/Entrez/DTDs/JATS-journalmeta1-3.ent' adding 'Bio/Entrez/DTDs/JATS-link1-3.ent' adding 'Bio/Entrez/DTDs/JATS-list1-3.ent' adding 'Bio/Entrez/DTDs/JATS-math1-3.ent' adding 'Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent' adding 'Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent' adding 'Bio/Entrez/DTDs/JATS-modules1-3.ent' adding 'Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent' adding 'Bio/Entrez/DTDs/JATS-notat1-3.ent' adding 'Bio/Entrez/DTDs/JATS-para1-3.ent' adding 'Bio/Entrez/DTDs/JATS-phrase1-3.ent' adding 'Bio/Entrez/DTDs/JATS-references1-3.ent' adding 'Bio/Entrez/DTDs/JATS-related-object1-3.ent' adding 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'biopython-1.85.dist-info/top_level.txt' adding 'biopython-1.85.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for biopython (pyproject.toml): finished with status 'done' Created wheel for biopython: filename=biopython-1.85-cp39-cp39-linux_x86_64.whl size=3164869 sha256=ea89bcbdb2975f3eb38ae72d5823670352693fafffec7975fd17acba948aeaa0 Stored in directory: /builddir/.cache/pip/wheels/39/fe/0f/a5f1ba8d43cdb6dceab58fabc8e77d32615b48a7f6ebf3fca6 Successfully built biopython + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.EMIoZF + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64 ++ dirname /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64 + cd biopython-1.85 ++ ls /builddir/build/BUILD/biopython-1.85/pyproject-wheeldir/biopython-1.85-cp39-cp39-linux_x86_64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=biopython==1.85 + '[' -z biopython==1.85 ']' + TMPDIR=/builddir/build/BUILD/biopython-1.85/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/biopython-1.85/pyproject-wheeldir biopython==1.85 Using pip 22.0.4 from /usr/lib/python3.9/site-packages/pip (python 3.9) Looking in links: /builddir/build/BUILD/biopython-1.85/pyproject-wheeldir Processing ./pyproject-wheeldir/biopython-1.85-cp39-cp39-linux_x86_64.whl Installing collected packages: biopython Successfully installed biopython-1.85 + '[' -d /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib/python3.9/site-packages ']' + '[' /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages '!=' /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib/python3.9/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages ']' + site_dirs+=("/usr/lib64/python3.9/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.9/site-packages/biopython-1.85.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/biopython-1.85.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64 --record /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/biopython-1.85.dist-info/RECORD --output /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/biopython-1.85.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/biopython-1.85.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/biopython-1.85.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/biopython-1.85.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=8 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64 --sitelib /usr/lib/python3.9/site-packages --sitearch /usr/lib64/python3.9/site-packages --python-version 3.9 --pyproject-record /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-record --prefix /usr '*' +auto + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.85-1.el9 --unique-debug-suffix -1.85-1.el9.x86_64 --unique-debug-src-base python-biopython-1.85-1.el9.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/biopython-1.85 extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/Bio/Align/_aligncore.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/Bio/Align/_codonaligner.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/Bio/Align/_pairwisealigner.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/Bio/PDB/_bcif_helper.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/Bio/PDB/ccealign.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/Bio/SeqIO/_twoBitIO.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so original debug info size: 1100kB, size after compression: 1020kB /usr/bin/sepdebugcrcfix: Updated 11 CRC32s, 0 CRC32s did match. 1361 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9 using python3.9 Bytecompiling .py files below /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib/debug/usr/lib64/python3.9 using python3.9 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.ohZD49 + umask 022 + cd /builddir/build/BUILD + cd biopython-1.85 ++ cat /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-modules + '[' -z 'Bio Bio.Affy Bio.Affy.CelFile Bio.Align Bio.Align.AlignInfo Bio.Align.Applications Bio.Align.a2m Bio.Align.analysis Bio.Align.bed Bio.Align.bigbed Bio.Align.bigmaf Bio.Align.bigpsl Bio.Align.chain Bio.Align.clustal Bio.Align.emboss Bio.Align.exonerate Bio.Align.fasta Bio.Align.hhr Bio.Align.interfaces Bio.Align.maf Bio.Align.mauve Bio.Align.msf Bio.Align.nexus Bio.Align.phylip Bio.Align.psl Bio.Align.sam Bio.Align.stockholm Bio.Align.substitution_matrices Bio.Align.tabular Bio.AlignIO Bio.AlignIO.ClustalIO Bio.AlignIO.EmbossIO Bio.AlignIO.FastaIO Bio.AlignIO.Interfaces Bio.AlignIO.MafIO Bio.AlignIO.MauveIO Bio.AlignIO.MsfIO Bio.AlignIO.NexusIO Bio.AlignIO.PhylipIO Bio.AlignIO.StockholmIO Bio.Alphabet Bio.Application Bio.Blast Bio.Blast.Applications Bio.Blast.NCBIWWW Bio.Blast.NCBIXML Bio.CAPS Bio.Cluster Bio.Compass Bio.Data Bio.Data.CodonTable Bio.Data.IUPACData Bio.Data.PDBData Bio.Emboss Bio.Emboss.Applications Bio.Emboss.Primer3 Bio.Emboss.PrimerSearch Bio.Entrez Bio.Entrez.Parser Bio.ExPASy Bio.ExPASy.Enzyme Bio.ExPASy.Prodoc Bio.ExPASy.Prosite Bio.ExPASy.ScanProsite Bio.ExPASy.cellosaurus Bio.File Bio.GenBank Bio.GenBank.Record Bio.GenBank.Scanner Bio.GenBank.utils Bio.Geo Bio.Geo.Record Bio.Graphics Bio.Graphics.BasicChromosome Bio.Graphics.ColorSpiral Bio.Graphics.Comparative Bio.Graphics.DisplayRepresentation Bio.Graphics.Distribution Bio.Graphics.GenomeDiagram Bio.Graphics.KGML_vis Bio.HMM Bio.HMM.DynamicProgramming Bio.HMM.MarkovModel Bio.HMM.Trainer Bio.HMM.Utilities Bio.KEGG Bio.KEGG.Compound Bio.KEGG.Enzyme Bio.KEGG.Gene Bio.KEGG.KGML Bio.KEGG.KGML.KGML_parser Bio.KEGG.KGML.KGML_pathway Bio.KEGG.Map Bio.KEGG.REST Bio.LogisticRegression Bio.MarkovModel Bio.MaxEntropy Bio.Medline Bio.NMR Bio.NMR.NOEtools Bio.NMR.xpktools Bio.NaiveBayes Bio.Nexus Bio.Nexus.Nexus Bio.Nexus.Nodes Bio.Nexus.StandardData Bio.Nexus.Trees Bio.Nexus.cnexus Bio.PDB Bio.PDB.AbstractPropertyMap Bio.PDB.Atom Bio.PDB.Chain Bio.PDB.DSSP Bio.PDB.Dice Bio.PDB.Entity Bio.PDB.FragmentMapper Bio.PDB.HSExposure Bio.PDB.MMCIF2Dict Bio.PDB.MMCIFParser Bio.PDB.Model Bio.PDB.NACCESS Bio.PDB.NeighborSearch Bio.PDB.PDBExceptions Bio.PDB.PDBIO Bio.PDB.PDBList Bio.PDB.PDBMLParser Bio.PDB.PDBParser Bio.PDB.PICIO Bio.PDB.PSEA Bio.PDB.Polypeptide Bio.PDB.Residue Bio.PDB.ResidueDepth Bio.PDB.SASA Bio.PDB.SCADIO Bio.PDB.Selection Bio.PDB.Structure Bio.PDB.StructureAlignment Bio.PDB.StructureBuilder Bio.PDB.Superimposer Bio.PDB.alphafold_db Bio.PDB.binary_cif Bio.PDB.ccealign Bio.PDB.cealign Bio.PDB.ic_data Bio.PDB.ic_rebuild Bio.PDB.internal_coords Bio.PDB.kdtrees Bio.PDB.mmcifio Bio.PDB.mmtf Bio.PDB.mmtf.DefaultParser Bio.PDB.mmtf.mmtfio Bio.PDB.parse_pdb_header Bio.PDB.qcprot Bio.PDB.vectors Bio.Pathway Bio.Pathway.Rep Bio.Pathway.Rep.Graph Bio.Pathway.Rep.MultiGraph Bio.Phylo Bio.Phylo.Applications Bio.Phylo.BaseTree Bio.Phylo.CDAO Bio.Phylo.CDAOIO Bio.Phylo.Consensus Bio.Phylo.NeXML Bio.Phylo.NeXMLIO Bio.Phylo.Newick Bio.Phylo.NewickIO Bio.Phylo.NexusIO Bio.Phylo.PAML Bio.Phylo.PAML.baseml Bio.Phylo.PAML.chi2 Bio.Phylo.PAML.codeml Bio.Phylo.PAML.yn00 Bio.Phylo.PhyloXML Bio.Phylo.PhyloXMLIO Bio.Phylo.TreeConstruction Bio.PopGen Bio.PopGen.GenePop Bio.PopGen.GenePop.Controller Bio.PopGen.GenePop.EasyController Bio.PopGen.GenePop.FileParser Bio.PopGen.GenePop.LargeFileParser Bio.Restriction Bio.Restriction.PrintFormat Bio.Restriction.Restriction Bio.Restriction.Restriction_Dictionary Bio.SCOP Bio.SCOP.Cla Bio.SCOP.Des Bio.SCOP.Dom Bio.SCOP.Hie Bio.SCOP.Raf Bio.SCOP.Residues Bio.SVDSuperimposer Bio.SearchIO Bio.SearchIO.BlastIO Bio.SearchIO.BlastIO.blast_tab Bio.SearchIO.BlastIO.blast_xml Bio.SearchIO.BlatIO Bio.SearchIO.ExonerateIO Bio.SearchIO.ExonerateIO.exonerate_cigar Bio.SearchIO.ExonerateIO.exonerate_text Bio.SearchIO.ExonerateIO.exonerate_vulgar Bio.SearchIO.FastaIO Bio.SearchIO.HHsuiteIO Bio.SearchIO.HHsuiteIO.hhsuite2_text Bio.SearchIO.HmmerIO Bio.SearchIO.HmmerIO.hmmer2_text Bio.SearchIO.HmmerIO.hmmer3_domtab Bio.SearchIO.HmmerIO.hmmer3_tab Bio.SearchIO.HmmerIO.hmmer3_text Bio.SearchIO.InterproscanIO Bio.SearchIO.InterproscanIO.interproscan_xml Bio.Seq Bio.SeqFeature Bio.SeqIO Bio.SeqIO.AbiIO Bio.SeqIO.AceIO Bio.SeqIO.FastaIO Bio.SeqIO.GckIO Bio.SeqIO.GfaIO Bio.SeqIO.IgIO Bio.SeqIO.InsdcIO Bio.SeqIO.Interfaces Bio.SeqIO.NibIO Bio.SeqIO.PdbIO Bio.SeqIO.PhdIO Bio.SeqIO.PirIO Bio.SeqIO.QualityIO Bio.SeqIO.SeqXmlIO Bio.SeqIO.SffIO Bio.SeqIO.SnapGeneIO Bio.SeqIO.SwissIO Bio.SeqIO.TabIO Bio.SeqIO.TwoBitIO Bio.SeqIO.UniprotIO Bio.SeqIO.XdnaIO Bio.SeqRecord Bio.SeqUtils Bio.SeqUtils.CheckSum Bio.SeqUtils.IsoelectricPoint Bio.SeqUtils.MeltingTemp Bio.SeqUtils.ProtParam Bio.SeqUtils.ProtParamData Bio.SeqUtils.lcc Bio.Sequencing Bio.Sequencing.Ace Bio.Sequencing.Applications Bio.Sequencing.Phd Bio.SwissProt Bio.SwissProt.KeyWList Bio.TogoWS Bio.UniGene Bio.UniProt Bio.UniProt.GOA Bio.bgzf Bio.codonalign Bio.codonalign.codonalignment Bio.codonalign.codonseq Bio.cpairwise2 Bio.kNN Bio.motifs Bio.motifs.alignace Bio.motifs.applications Bio.motifs.clusterbuster Bio.motifs.jaspar Bio.motifs.jaspar.db Bio.motifs.mast Bio.motifs.matrix Bio.motifs.meme Bio.motifs.minimal Bio.motifs.pfm Bio.motifs.thresholds Bio.motifs.transfac Bio.motifs.xms Bio.pairwise2 Bio.phenotype Bio.phenotype.phen_micro Bio.phenotype.pm_fitting BioSQL BioSQL.BioSeq BioSQL.BioSeqDatabase BioSQL.DBUtils BioSQL.Loader' ']' + '[' '!' -f /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib/python3.9/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64/usr/lib/python3.9/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -s /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-biopython-1.85-1.el9.x86_64-pyproject-modules -t Check import: Bio Check import: BioSQL + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-biopython-1.85-1.el9.x86_64 Provides: python-biopython = 1.85-1.el9 python3-biopython = 1.85-1.el9 python3-biopython(x86-64) = 1.85-1.el9 python3.9-biopython = 1.85-1.el9 python3.9dist(biopython) = 1.85 python3dist(biopython) = 1.85 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) python(abi) = 3.9 python3.9dist(numpy) rtld(GNU_HASH) Obsoletes: python39-biopython < 1.85-1.el9 Processing files: python-biopython-debugsource-1.85-1.el9.x86_64 Provides: python-biopython-debugsource = 1.85-1.el9 python-biopython-debugsource(x86-64) = 1.85-1.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-biopython-debuginfo-1.85-1.el9.x86_64 Provides: debuginfo(build-id) = 123cbc57180f533e55494836425c15c463a610db debuginfo(build-id) = 1e27e716e79c28e0f955a056a16116871b0cdc05 debuginfo(build-id) = 38d6adcd12a07ba7ce301177afdde708190b0067 debuginfo(build-id) = 61fb8466b13396b14760be5809a39e81f329956a debuginfo(build-id) = 6fb79b7e3defdaff083fa87ff188357833b6da5a debuginfo(build-id) = 758ba27945eaedba920daec924d1fd49636d8389 debuginfo(build-id) = 8a893568ca4d0179232426a2792e5efaf1b9477c debuginfo(build-id) = c66c19bb73170f0fe8fc4c041fe21061a55a9243 debuginfo(build-id) = ca0352330ab55710fce1952749b06049dbbbdf1d debuginfo(build-id) = cf526477120dc8ef57e7049c714c2785bc89dd70 debuginfo(build-id) = da370f92286716089d15d47a3d842ea91c0a7cdf python-biopython-debuginfo = 1.85-1.el9 python3-biopython-debuginfo = 1.85-1.el9 python3-biopython-debuginfo(x86-64) = 1.85-1.el9 python3.9-biopython-debuginfo = 1.85-1.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-biopython-debugsource(x86-64) = 1.85-1.el9 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64 Wrote: /builddir/build/SRPMS/python-biopython-1.85-1.el9.src.rpm Wrote: /builddir/build/RPMS/python3-biopython-debuginfo-1.85-1.el9.x86_64.rpm Wrote: /builddir/build/RPMS/python-biopython-debugsource-1.85-1.el9.x86_64.rpm Wrote: /builddir/build/RPMS/python3-biopython-1.85-1.el9.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ge2DAo + umask 022 + cd /builddir/build/BUILD + cd biopython-1.85 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-biopython-1.85-1.el9.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild python-biopython-1.85-1.el9.src.rpm Finish: build phase for python-biopython-1.85-1.el9.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/rhel+epel-9-x86_64-1736957274.987317/root/var/log/dnf.log /var/lib/mock/rhel+epel-9-x86_64-1736957274.987317/root/var/log/dnf.librepo.log /var/lib/mock/rhel+epel-9-x86_64-1736957274.987317/root/var/log/dnf.rpm.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/python-biopython-1.85-1.el9.src.rpm) Config(child) 1 minutes 8 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-biopython", "epoch": null, "version": "1.85", "release": "1.el9", "arch": "x86_64" }, { "name": "python-biopython", "epoch": null, "version": "1.85", "release": "1.el9", "arch": "src" }, { "name": "python-biopython-debugsource", "epoch": null, "version": "1.85", "release": "1.el9", "arch": "x86_64" }, { "name": "python3-biopython-debuginfo", "epoch": null, "version": "1.85", "release": "1.el9", "arch": "x86_64" } ] } RPMResults finished