Mock Version: 2.15 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-ctbBio.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1641086732.246141/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '28a80dc33eb94cbab439c8a366612eb5', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1641086732.246141/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-ctbBio.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1640908800 Wrote: /builddir/build/SRPMS/python-ctbBio-0.47-1.fc36.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-ctbBio.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1641086732.246141/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a648debccd9b4dba99b5abae85e977f9', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1641086732.246141/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-ctbBio.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1640908800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.o2cNEb + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ctbBio-0.47 + /usr/bin/gzip -dc /builddir/build/SOURCES/ctbBio-0.47.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd ctbBio-0.47 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.LnXoW9 + umask 022 + cd /builddir/build/BUILD + cd ctbBio-0.47 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-ctbBio-0.47-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-ctbBio.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1641086732.246141/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '375e6582ef2e492cbb31fc9eb4fdd15f', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1641086732.246141/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-ctbBio.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1640908800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.VofoR9 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ctbBio-0.47 + /usr/bin/gzip -dc /builddir/build/SOURCES/ctbBio-0.47.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd ctbBio-0.47 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.QwDbXX + umask 022 + cd /builddir/build/BUILD + cd ctbBio-0.47 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: creating ctbBio.egg-info HOOK STDOUT: writing ctbBio.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to ctbBio.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to ctbBio.egg-info/requires.txt HOOK STDOUT: writing top-level names to ctbBio.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'ctbBio.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing ctbBio.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to ctbBio.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to ctbBio.egg-info/requires.txt HOOK STDOUT: writing top-level names to ctbBio.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/ctbBio-0.47/ctbBio.dist-info' Handling networkx from wheel metadata: Requires-Dist Requirement not satisfied: networkx Handling python-Levenshtein from wheel metadata: Requires-Dist Requirement not satisfied: python-Levenshtein Handling numpy from wheel metadata: Requires-Dist Requirement not satisfied: numpy Handling pandas from wheel metadata: Requires-Dist Requirement not satisfied: pandas Handling biopython from wheel metadata: Requires-Dist Requirement not satisfied: biopython Handling tqdm from wheel metadata: Requires-Dist Requirement not satisfied: tqdm + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-ctbBio-0.47-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-ctbBio.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1641086732.246141/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9de61cf523224e94b3277163b7bd679e', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1641086732.246141/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-ctbBio.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1640908800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.lmibfm + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ctbBio-0.47 + /usr/bin/gzip -dc /builddir/build/SOURCES/ctbBio-0.47.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd ctbBio-0.47 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Exs2I7 + umask 022 + cd /builddir/build/BUILD + cd ctbBio-0.47 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: creating ctbBio.egg-info HOOK STDOUT: writing ctbBio.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to ctbBio.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to ctbBio.egg-info/requires.txt HOOK STDOUT: writing top-level names to ctbBio.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'ctbBio.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing ctbBio.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to ctbBio.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to ctbBio.egg-info/requires.txt HOOK STDOUT: writing top-level names to ctbBio.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/ctbBio-0.47/ctbBio.dist-info' Handling networkx from wheel metadata: Requires-Dist Requirement satisfied: networkx (installed: networkx 2.6.3) Handling python-Levenshtein from wheel metadata: Requires-Dist Requirement satisfied: python-Levenshtein (installed: python-Levenshtein 0.12.0) Handling numpy from wheel metadata: Requires-Dist Requirement satisfied: numpy (installed: numpy 1.21.5) Handling pandas from wheel metadata: Requires-Dist Requirement satisfied: pandas (installed: pandas 1.3.3) Handling biopython from wheel metadata: Requires-Dist Requirement satisfied: biopython (installed: biopython 1.79) Handling tqdm from wheel metadata: Requires-Dist Requirement satisfied: tqdm (installed: tqdm 4.62.3) + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-ctbBio-0.47-1.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-ctbBio.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1641086732.246141/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a92dcf5b56bb4b48935ded5661161847', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1641086732.246141/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n3jpzfr_:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-ctbBio.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1640908800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.yPUXUd + umask 022 + cd /builddir/build/BUILD + cd ctbBio-0.47 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv ctbBio.dist-info/ removed 'ctbBio.dist-info/METADATA' removed 'ctbBio.dist-info/top_level.txt' removed directory 'ctbBio.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: creating ctbBio.egg-info HOOK STDOUT: writing ctbBio.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to ctbBio.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to ctbBio.egg-info/requires.txt HOOK STDOUT: writing top-level names to ctbBio.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'ctbBio.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing ctbBio.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to ctbBio.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to ctbBio.egg-info/requires.txt HOOK STDOUT: writing top-level names to ctbBio.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: writing manifest file 'ctbBio.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/ctbBio-0.47/ctbBio.dist-info' Handling networkx from wheel metadata: Requires-Dist Requirement satisfied: networkx (installed: networkx 2.6.3) Handling python-Levenshtein from wheel metadata: Requires-Dist Requirement satisfied: python-Levenshtein (installed: python-Levenshtein 0.12.0) Handling numpy from wheel metadata: Requires-Dist Requirement satisfied: numpy (installed: numpy 1.21.5) Handling pandas from wheel metadata: Requires-Dist Requirement satisfied: pandas (installed: pandas 1.3.3) Handling biopython from wheel metadata: Requires-Dist Requirement satisfied: biopython (installed: biopython 1.79) Handling tqdm from wheel metadata: Requires-Dist Requirement satisfied: tqdm (installed: tqdm 4.62.3) + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.iCPSDa + umask 022 + cd /builddir/build/BUILD + cd ctbBio-0.47 + mkdir -p /builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1' + TMPDIR=/builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir + /usr/bin/python3 -m pip wheel --wheel-dir /builddir/build/BUILD/ctbBio-0.47/pyproject-wheeldir --no-deps --use-pep517 --no-build-isolation --disable-pip-version-check --no-clean --progress-bar off --verbose . Processing /builddir/build/BUILD/ctbBio-0.47 Preparing metadata (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/tmpopqoea8n running dist_info creating /builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/pip-modern-metadata-sfa87842/ctbBio.egg-info writing /builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/pip-modern-metadata-sfa87842/ctbBio.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/pip-modern-metadata-sfa87842/ctbBio.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/pip-modern-metadata-sfa87842/ctbBio.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/pip-modern-metadata-sfa87842/ctbBio.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/pip-modern-metadata-sfa87842/ctbBio.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/pip-modern-metadata-sfa87842/ctbBio.egg-info/SOURCES.txt' writing manifest file '/builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/pip-modern-metadata-sfa87842/ctbBio.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/pip-modern-metadata-sfa87842/ctbBio.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: ctbBio Building wheel for ctbBio (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/tmp_1fsit9c running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/ctbBio copying ctbBio/strip_align.py -> build/lib/ctbBio copying ctbBio/rp16.py -> build/lib/ctbBio copying ctbBio/fasta.py -> build/lib/ctbBio copying ctbBio/crossmap.py -> build/lib/ctbBio copying ctbBio/unmapped.py -> build/lib/ctbBio copying ctbBio/neto.py -> build/lib/ctbBio copying ctbBio/rec_best_blast.py -> build/lib/ctbBio copying ctbBio/strip_masked.py -> build/lib/ctbBio copying ctbBio/parallel.py -> build/lib/ctbBio copying ctbBio/fasta_stats.py -> build/lib/ctbBio copying ctbBio/concat_align.py -> build/lib/ctbBio copying ctbBio/lookup-word.py -> build/lib/ctbBio copying ctbBio/name2fasta.py -> build/lib/ctbBio copying ctbBio/genome_coverage.py -> build/lib/ctbBio copying ctbBio/search.py -> build/lib/ctbBio copying ctbBio/orthologer_summary.py -> build/lib/ctbBio copying ctbBio/transform.py -> build/lib/ctbBio copying ctbBio/stats.py -> build/lib/ctbBio copying ctbBio/fastq2fasta.py -> build/lib/ctbBio copying ctbBio/fasta_length.py -> build/lib/ctbBio copying ctbBio/fastq_merge.py -> build/lib/ctbBio copying ctbBio/calculate_coverage.py -> build/lib/ctbBio copying ctbBio/fasta_region.py -> build/lib/ctbBio copying ctbBio/stockholm2oneline.py -> build/lib/ctbBio copying ctbBio/strip_align_inserts.py -> build/lib/ctbBio copying ctbBio/besthits.py -> build/lib/ctbBio copying ctbBio/shuffle_genome.py -> build/lib/ctbBio copying ctbBio/ncbi_download.py -> build/lib/ctbBio copying ctbBio/16SfromHMM.py -> build/lib/ctbBio copying ctbBio/__init__.py -> build/lib/ctbBio copying ctbBio/lookup.py -> build/lib/ctbBio copying ctbBio/rax.py -> build/lib/ctbBio copying ctbBio/cluster_ani.py -> build/lib/ctbBio copying ctbBio/rRNA_insertions.py -> build/lib/ctbBio copying ctbBio/filter_fastq_sam.py -> build/lib/ctbBio copying ctbBio/fix_fasta.py -> build/lib/ctbBio copying ctbBio/name2faa.py -> build/lib/ctbBio copying ctbBio/subset_sam.py -> build/lib/ctbBio copying ctbBio/orthologer.py -> build/lib/ctbBio copying ctbBio/subset_reads.py -> build/lib/ctbBio copying ctbBio/genome_variation.py -> build/lib/ctbBio copying ctbBio/nr_fasta.py -> build/lib/ctbBio copying ctbBio/rRNA_copies.py -> build/lib/ctbBio copying ctbBio/23SfromHMM.py -> build/lib/ctbBio copying ctbBio/compare_aligned.py -> build/lib/ctbBio copying ctbBio/rc.py -> build/lib/ctbBio copying ctbBio/rRNA_insertions_gff.py -> build/lib/ctbBio copying ctbBio/numblast-pident.py -> build/lib/ctbBio copying ctbBio/fastq_split.py -> build/lib/ctbBio copying ctbBio/stockholm2fa.py -> build/lib/ctbBio copying ctbBio/sixframe.py -> build/lib/ctbBio copying ctbBio/mapped.py -> build/lib/ctbBio copying ctbBio/numblast.py -> build/lib/ctbBio copying ctbBio/n50.py -> build/lib/ctbBio copying ctbBio/genome_abundance.py -> build/lib/ctbBio copying ctbBio/sam2fastq.py -> build/lib/ctbBio running build_scripts creating build/scripts-3.10 copying and adjusting ctbBio/16SfromHMM.py -> build/scripts-3.10 copying and adjusting ctbBio/23SfromHMM.py -> build/scripts-3.10 copying and adjusting ctbBio/numblast.py -> build/scripts-3.10 copying and adjusting ctbBio/besthits.py -> build/scripts-3.10 copying and adjusting ctbBio/calculate_coverage.py -> build/scripts-3.10 copying and adjusting ctbBio/cluster_ani.py -> build/scripts-3.10 copying and adjusting ctbBio/compare_aligned.py -> build/scripts-3.10 copying and adjusting ctbBio/concat_align.py -> build/scripts-3.10 copying and adjusting ctbBio/crossmap.py -> build/scripts-3.10 copying and adjusting ctbBio/fasta.py -> build/scripts-3.10 copying and adjusting ctbBio/fasta_length.py -> build/scripts-3.10 copying and adjusting ctbBio/fasta_region.py -> build/scripts-3.10 copying and adjusting ctbBio/fasta_stats.py -> build/scripts-3.10 copying and adjusting ctbBio/fastq2fasta.py -> build/scripts-3.10 copying and adjusting ctbBio/fastq_merge.py -> build/scripts-3.10 copying and adjusting ctbBio/fastq_split.py -> build/scripts-3.10 copying and adjusting ctbBio/filter_fastq_sam.py -> build/scripts-3.10 copying and adjusting ctbBio/fix_fasta.py -> build/scripts-3.10 copying and adjusting ctbBio/genome_abundance.py -> build/scripts-3.10 copying and adjusting ctbBio/genome_coverage.py -> build/scripts-3.10 copying and adjusting ctbBio/genome_variation.py -> build/scripts-3.10 copying and adjusting ctbBio/lookup-word.py -> build/scripts-3.10 copying and adjusting ctbBio/lookup.py -> build/scripts-3.10 copying and adjusting ctbBio/mapped.py -> build/scripts-3.10 copying and adjusting ctbBio/n50.py -> build/scripts-3.10 copying and adjusting ctbBio/name2fasta.py -> build/scripts-3.10 copying and adjusting ctbBio/name2faa.py -> build/scripts-3.10 copying and adjusting ctbBio/neto.py -> build/scripts-3.10 copying and adjusting ctbBio/rec_best_blast.py -> build/scripts-3.10 copying and adjusting ctbBio/nr_fasta.py -> build/scripts-3.10 copying and adjusting ctbBio/numblast-pident.py -> build/scripts-3.10 copying and adjusting ctbBio/orthologer.py -> build/scripts-3.10 copying and adjusting ctbBio/orthologer_summary.py -> build/scripts-3.10 copying and adjusting ctbBio/parallel.py -> build/scripts-3.10 copying and adjusting ctbBio/rRNA_copies.py -> build/scripts-3.10 copying and adjusting ctbBio/rRNA_insertions.py -> build/scripts-3.10 copying and adjusting ctbBio/rax.py -> build/scripts-3.10 copying and adjusting ctbBio/rc.py -> build/scripts-3.10 copying and adjusting ctbBio/rp16.py -> build/scripts-3.10 copying ctbBio/rp16_retreive.sh -> build/scripts-3.10 copying and adjusting ctbBio/sam2fastq.py -> build/scripts-3.10 copying and adjusting ctbBio/search.py -> build/scripts-3.10 copying and adjusting ctbBio/shuffle_genome.py -> build/scripts-3.10 copying and adjusting ctbBio/sixframe.py -> build/scripts-3.10 copying and adjusting ctbBio/stats.py -> build/scripts-3.10 copying and adjusting ctbBio/stockholm2fa.py -> build/scripts-3.10 copying and adjusting ctbBio/stockholm2oneline.py -> build/scripts-3.10 copying and adjusting ctbBio/strip_align.py -> build/scripts-3.10 copying and adjusting ctbBio/strip_align_inserts.py -> build/scripts-3.10 copying and adjusting ctbBio/strip_masked.py -> build/scripts-3.10 copying and adjusting ctbBio/subset_sam.py -> build/scripts-3.10 copying and adjusting ctbBio/subset_reads.py -> build/scripts-3.10 copying and adjusting ctbBio/transform.py -> build/scripts-3.10 copying and adjusting ctbBio/unmapped.py -> build/scripts-3.10 copying and adjusting ctbBio/rRNA_insertions_gff.py -> build/scripts-3.10 copying and adjusting ctbBio/ncbi_download.py -> build/scripts-3.10 changing mode of build/scripts-3.10/16SfromHMM.py from 644 to 755 changing mode of build/scripts-3.10/23SfromHMM.py from 644 to 755 changing mode of build/scripts-3.10/numblast.py from 644 to 755 changing mode of build/scripts-3.10/besthits.py from 644 to 755 changing mode of build/scripts-3.10/calculate_coverage.py from 644 to 755 changing mode of build/scripts-3.10/cluster_ani.py from 644 to 755 changing mode of build/scripts-3.10/compare_aligned.py from 644 to 755 changing mode of build/scripts-3.10/concat_align.py from 644 to 755 changing mode of build/scripts-3.10/crossmap.py from 644 to 755 changing mode of build/scripts-3.10/fasta.py from 644 to 755 changing mode of build/scripts-3.10/fasta_length.py from 644 to 755 changing mode of build/scripts-3.10/fasta_region.py from 644 to 755 changing mode of build/scripts-3.10/fasta_stats.py from 644 to 755 changing mode of build/scripts-3.10/fastq2fasta.py from 644 to 755 changing mode of build/scripts-3.10/fastq_merge.py from 644 to 755 changing mode of build/scripts-3.10/fastq_split.py from 644 to 755 changing mode of build/scripts-3.10/filter_fastq_sam.py from 644 to 755 changing mode of build/scripts-3.10/fix_fasta.py from 644 to 755 changing mode of build/scripts-3.10/genome_abundance.py from 644 to 755 changing mode of build/scripts-3.10/genome_coverage.py from 644 to 755 changing mode of build/scripts-3.10/genome_variation.py from 644 to 755 changing mode of build/scripts-3.10/lookup-word.py from 644 to 755 changing mode of build/scripts-3.10/lookup.py from 644 to 755 changing mode of build/scripts-3.10/mapped.py from 644 to 755 changing mode of build/scripts-3.10/n50.py from 644 to 755 changing mode of build/scripts-3.10/name2fasta.py from 644 to 755 changing mode of build/scripts-3.10/name2faa.py from 644 to 755 changing mode of build/scripts-3.10/neto.py from 644 to 755 changing mode of build/scripts-3.10/rec_best_blast.py from 644 to 755 changing mode of build/scripts-3.10/nr_fasta.py from 644 to 755 changing mode of build/scripts-3.10/numblast-pident.py from 644 to 755 changing mode of build/scripts-3.10/orthologer.py from 644 to 755 changing mode of build/scripts-3.10/orthologer_summary.py from 644 to 755 changing mode of build/scripts-3.10/parallel.py from 644 to 755 changing mode of build/scripts-3.10/rRNA_copies.py from 644 to 755 changing mode of build/scripts-3.10/rRNA_insertions.py from 644 to 755 changing mode of build/scripts-3.10/rax.py from 644 to 755 changing mode of build/scripts-3.10/rc.py from 644 to 755 changing mode of build/scripts-3.10/rp16.py from 644 to 755 changing mode of build/scripts-3.10/sam2fastq.py from 644 to 755 changing mode of build/scripts-3.10/search.py from 644 to 755 changing mode of build/scripts-3.10/shuffle_genome.py from 644 to 755 changing mode of build/scripts-3.10/sixframe.py from 644 to 755 changing mode of build/scripts-3.10/stats.py from 644 to 755 changing mode of build/scripts-3.10/stockholm2fa.py from 644 to 755 changing mode of build/scripts-3.10/stockholm2oneline.py from 644 to 755 changing mode of build/scripts-3.10/strip_align.py from 644 to 755 changing mode of build/scripts-3.10/strip_align_inserts.py from 644 to 755 changing mode of build/scripts-3.10/strip_masked.py from 644 to 755 changing mode of build/scripts-3.10/subset_sam.py from 644 to 755 changing mode of build/scripts-3.10/subset_reads.py from 644 to 755 changing mode of build/scripts-3.10/transform.py from 644 to 755 changing mode of build/scripts-3.10/unmapped.py from 644 to 755 changing mode of build/scripts-3.10/rRNA_insertions_gff.py from 644 to 755 changing mode of build/scripts-3.10/ncbi_download.py from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/sam2fastq.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/genome_abundance.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/n50.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/numblast.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/mapped.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/sixframe.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/stockholm2fa.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/fastq_split.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/numblast-pident.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/rRNA_insertions_gff.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/rc.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/compare_aligned.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/23SfromHMM.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/rRNA_copies.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/nr_fasta.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/genome_variation.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/subset_reads.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/orthologer.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/subset_sam.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/name2faa.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/fix_fasta.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/filter_fastq_sam.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/rRNA_insertions.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/cluster_ani.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/rax.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/lookup.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/__init__.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/16SfromHMM.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/ncbi_download.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/shuffle_genome.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/besthits.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/strip_align_inserts.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/stockholm2oneline.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/fasta_region.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/calculate_coverage.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/fastq_merge.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/fasta_length.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/fastq2fasta.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/stats.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/transform.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/orthologer_summary.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/search.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/genome_coverage.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/name2fasta.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/lookup-word.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/concat_align.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/fasta_stats.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/parallel.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/strip_masked.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/rec_best_blast.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/neto.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/unmapped.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/crossmap.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/fasta.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/rp16.py -> build/bdist.linux-x86_64/wheel/ctbBio copying build/lib/ctbBio/strip_align.py -> build/bdist.linux-x86_64/wheel/ctbBio running install_egg_info running egg_info creating ctbBio.egg-info writing ctbBio.egg-info/PKG-INFO writing dependency_links to ctbBio.egg-info/dependency_links.txt writing requirements to ctbBio.egg-info/requires.txt writing top-level names to ctbBio.egg-info/top_level.txt writing manifest file 'ctbBio.egg-info/SOURCES.txt' reading manifest file 'ctbBio.egg-info/SOURCES.txt' writing manifest file 'ctbBio.egg-info/SOURCES.txt' Copying ctbBio.egg-info to build/bdist.linux-x86_64/wheel/ctbBio-0.47-py3.10.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/ctbBio-0.47.data creating build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/ncbi_download.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/rRNA_insertions_gff.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/unmapped.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/transform.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/subset_reads.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/subset_sam.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/strip_masked.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/strip_align_inserts.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/strip_align.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/stockholm2oneline.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/stockholm2fa.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/stats.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/sixframe.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/shuffle_genome.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/search.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/sam2fastq.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/rp16_retreive.sh -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/rp16.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/rc.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/rax.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/rRNA_insertions.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/rRNA_copies.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/parallel.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/orthologer_summary.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/orthologer.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/numblast-pident.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/nr_fasta.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/rec_best_blast.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/neto.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/name2faa.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/name2fasta.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/n50.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/mapped.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/lookup.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/lookup-word.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/genome_variation.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/genome_coverage.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/genome_abundance.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/fix_fasta.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/filter_fastq_sam.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/fastq_split.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/fastq_merge.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/fastq2fasta.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/fasta_stats.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/fasta_region.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/fasta_length.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/fasta.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/crossmap.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/concat_align.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/compare_aligned.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/cluster_ani.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/calculate_coverage.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/besthits.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/numblast.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/23SfromHMM.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts copying build/scripts-3.10/16SfromHMM.py -> build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/ncbi_download.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/rRNA_insertions_gff.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/unmapped.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/transform.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/subset_reads.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/subset_sam.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/strip_masked.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/strip_align_inserts.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/strip_align.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/stockholm2oneline.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/stockholm2fa.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/stats.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/sixframe.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/shuffle_genome.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/search.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/sam2fastq.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/rp16_retreive.sh to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/rp16.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/rc.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/rax.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/rRNA_insertions.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/rRNA_copies.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/parallel.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/orthologer_summary.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/orthologer.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/numblast-pident.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/nr_fasta.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/rec_best_blast.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/neto.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/name2faa.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/name2fasta.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/n50.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/mapped.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/lookup.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/lookup-word.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/genome_variation.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/genome_coverage.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/genome_abundance.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/fix_fasta.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/filter_fastq_sam.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/fastq_split.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/fastq_merge.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/fastq2fasta.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/fasta_stats.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/fasta_region.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/fasta_length.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/fasta.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/crossmap.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/concat_align.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/compare_aligned.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/cluster_ani.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/calculate_coverage.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/besthits.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/numblast.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/23SfromHMM.py to 755 changing mode of build/bdist.linux-x86_64/wheel/ctbBio-0.47.data/scripts/16SfromHMM.py to 755 creating build/bdist.linux-x86_64/wheel/ctbBio-0.47.dist-info/WHEEL creating '/builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir/pip-wheel-n3_n87hy/tmpe34myc05/ctbBio-0.47-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'ctbBio/16SfromHMM.py' adding 'ctbBio/23SfromHMM.py' adding 'ctbBio/__init__.py' adding 'ctbBio/besthits.py' adding 'ctbBio/calculate_coverage.py' adding 'ctbBio/cluster_ani.py' adding 'ctbBio/compare_aligned.py' adding 'ctbBio/concat_align.py' adding 'ctbBio/crossmap.py' adding 'ctbBio/fasta.py' adding 'ctbBio/fasta_length.py' adding 'ctbBio/fasta_region.py' adding 'ctbBio/fasta_stats.py' adding 'ctbBio/fastq2fasta.py' adding 'ctbBio/fastq_merge.py' adding 'ctbBio/fastq_split.py' adding 'ctbBio/filter_fastq_sam.py' adding 'ctbBio/fix_fasta.py' adding 'ctbBio/genome_abundance.py' adding 'ctbBio/genome_coverage.py' adding 'ctbBio/genome_variation.py' adding 'ctbBio/lookup-word.py' adding 'ctbBio/lookup.py' adding 'ctbBio/mapped.py' adding 'ctbBio/n50.py' adding 'ctbBio/name2faa.py' adding 'ctbBio/name2fasta.py' adding 'ctbBio/ncbi_download.py' adding 'ctbBio/neto.py' adding 'ctbBio/nr_fasta.py' adding 'ctbBio/numblast-pident.py' adding 'ctbBio/numblast.py' adding 'ctbBio/orthologer.py' adding 'ctbBio/orthologer_summary.py' adding 'ctbBio/parallel.py' adding 'ctbBio/rRNA_copies.py' adding 'ctbBio/rRNA_insertions.py' adding 'ctbBio/rRNA_insertions_gff.py' adding 'ctbBio/rax.py' adding 'ctbBio/rc.py' adding 'ctbBio/rec_best_blast.py' adding 'ctbBio/rp16.py' adding 'ctbBio/sam2fastq.py' adding 'ctbBio/search.py' adding 'ctbBio/shuffle_genome.py' adding 'ctbBio/sixframe.py' adding 'ctbBio/stats.py' adding 'ctbBio/stockholm2fa.py' adding 'ctbBio/stockholm2oneline.py' adding 'ctbBio/strip_align.py' adding 'ctbBio/strip_align_inserts.py' adding 'ctbBio/strip_masked.py' adding 'ctbBio/subset_reads.py' adding 'ctbBio/subset_sam.py' adding 'ctbBio/transform.py' adding 'ctbBio/unmapped.py' adding 'ctbBio-0.47.data/scripts/16SfromHMM.py' adding 'ctbBio-0.47.data/scripts/23SfromHMM.py' adding 'ctbBio-0.47.data/scripts/besthits.py' adding 'ctbBio-0.47.data/scripts/calculate_coverage.py' adding 'ctbBio-0.47.data/scripts/cluster_ani.py' adding 'ctbBio-0.47.data/scripts/compare_aligned.py' adding 'ctbBio-0.47.data/scripts/concat_align.py' adding 'ctbBio-0.47.data/scripts/crossmap.py' adding 'ctbBio-0.47.data/scripts/fasta.py' adding 'ctbBio-0.47.data/scripts/fasta_length.py' adding 'ctbBio-0.47.data/scripts/fasta_region.py' adding 'ctbBio-0.47.data/scripts/fasta_stats.py' adding 'ctbBio-0.47.data/scripts/fastq2fasta.py' adding 'ctbBio-0.47.data/scripts/fastq_merge.py' adding 'ctbBio-0.47.data/scripts/fastq_split.py' adding 'ctbBio-0.47.data/scripts/filter_fastq_sam.py' adding 'ctbBio-0.47.data/scripts/fix_fasta.py' adding 'ctbBio-0.47.data/scripts/genome_abundance.py' adding 'ctbBio-0.47.data/scripts/genome_coverage.py' adding 'ctbBio-0.47.data/scripts/genome_variation.py' adding 'ctbBio-0.47.data/scripts/lookup-word.py' adding 'ctbBio-0.47.data/scripts/lookup.py' adding 'ctbBio-0.47.data/scripts/mapped.py' adding 'ctbBio-0.47.data/scripts/n50.py' adding 'ctbBio-0.47.data/scripts/name2faa.py' adding 'ctbBio-0.47.data/scripts/name2fasta.py' adding 'ctbBio-0.47.data/scripts/ncbi_download.py' adding 'ctbBio-0.47.data/scripts/neto.py' adding 'ctbBio-0.47.data/scripts/nr_fasta.py' adding 'ctbBio-0.47.data/scripts/numblast-pident.py' adding 'ctbBio-0.47.data/scripts/numblast.py' adding 'ctbBio-0.47.data/scripts/orthologer.py' adding 'ctbBio-0.47.data/scripts/orthologer_summary.py' adding 'ctbBio-0.47.data/scripts/parallel.py' adding 'ctbBio-0.47.data/scripts/rRNA_copies.py' adding 'ctbBio-0.47.data/scripts/rRNA_insertions.py' adding 'ctbBio-0.47.data/scripts/rRNA_insertions_gff.py' adding 'ctbBio-0.47.data/scripts/rax.py' adding 'ctbBio-0.47.data/scripts/rc.py' adding 'ctbBio-0.47.data/scripts/rec_best_blast.py' adding 'ctbBio-0.47.data/scripts/rp16.py' adding 'ctbBio-0.47.data/scripts/rp16_retreive.sh' adding 'ctbBio-0.47.data/scripts/sam2fastq.py' adding 'ctbBio-0.47.data/scripts/search.py' adding 'ctbBio-0.47.data/scripts/shuffle_genome.py' adding 'ctbBio-0.47.data/scripts/sixframe.py' adding 'ctbBio-0.47.data/scripts/stats.py' adding 'ctbBio-0.47.data/scripts/stockholm2fa.py' adding 'ctbBio-0.47.data/scripts/stockholm2oneline.py' adding 'ctbBio-0.47.data/scripts/strip_align.py' adding 'ctbBio-0.47.data/scripts/strip_align_inserts.py' adding 'ctbBio-0.47.data/scripts/strip_masked.py' adding 'ctbBio-0.47.data/scripts/subset_reads.py' adding 'ctbBio-0.47.data/scripts/subset_sam.py' adding 'ctbBio-0.47.data/scripts/transform.py' adding 'ctbBio-0.47.data/scripts/unmapped.py' adding 'ctbBio-0.47.dist-info/METADATA' adding 'ctbBio-0.47.dist-info/WHEEL' adding 'ctbBio-0.47.dist-info/top_level.txt' adding 'ctbBio-0.47.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for ctbBio (pyproject.toml): finished with status 'done' Created wheel for ctbBio: filename=ctbBio-0.47-py3-none-any.whl size=175064 sha256=1322901185bd6ecc2e6366b6e9bc93be33f4a76d11bd993177214b7e56e67c2b Stored in directory: /builddir/.cache/pip/wheels/9f/5a/cc/1b00ad0753c9890eb60fea3b7a93d773ee7b2417755edb6782 Successfully built ctbBio + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.N5lr9i + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64 ++ dirname /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64 + cd ctbBio-0.47 ++ ls /builddir/build/BUILD/ctbBio-0.47/pyproject-wheeldir/ctbBio-0.47-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=ctbBio==0.47 + TMPDIR=/builddir/build/BUILD/ctbBio-0.47/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64 --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/ctbBio-0.47/pyproject-wheeldir ctbBio==0.47 Using pip 21.3.1 from /usr/lib/python3.10/site-packages/pip (python 3.10) Looking in links: /builddir/build/BUILD/ctbBio-0.47/pyproject-wheeldir Processing ./pyproject-wheeldir/ctbBio-0.47-py3-none-any.whl Installing collected packages: ctbBio Successfully installed ctbBio-0.47 + '[' -d /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin ']' + '[' -f /usr/bin/pathfix3.10.py ']' + pathfix=/usr/bin/pathfix3.10.py + '[' -z s ']' + shebang_flags=-kas + /usr/bin/pathfix3.10.py -pni /usr/bin/python3 -kas /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/16SfromHMM.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/23SfromHMM.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/__pycache__ /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/besthits.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/calculate_coverage.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/cluster_ani.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/compare_aligned.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/concat_align.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/crossmap.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/fasta.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/fasta_length.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/fasta_region.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/fasta_stats.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/fastq2fasta.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/fastq_merge.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/fastq_split.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/filter_fastq_sam.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/fix_fasta.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/genome_abundance.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/genome_coverage.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/genome_variation.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/lookup-word.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/lookup.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/mapped.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/n50.py /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/name2faa.py 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'/builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin/__pycache__' + rm -f /builddir/build/BUILD/pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib/python3.10/site-packages ']' + site_dirs+=("/usr/lib/python3.10/site-packages") + '[' /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib64/python3.10/site-packages '!=' /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib/python3.10/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib64/python3.10/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.10/site-packages/ctbBio-0.47.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib/python3.10/site-packages/ctbBio-0.47.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64 --record /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib/python3.10/site-packages/ctbBio-0.47.dist-info/RECORD --output /builddir/build/BUILD/pyproject-record + rm -fv /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib/python3.10/site-packages/ctbBio-0.47.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib/python3.10/site-packages/ctbBio-0.47.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib/python3.10/site-packages/ctbBio-0.47.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib/python3.10/site-packages/ctbBio-0.47.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/pyproject-files --output-modules /builddir/build/BUILD/pyproject-modules --buildroot /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64 --sitelib /usr/lib/python3.10/site-packages --sitearch /usr/lib64/python3.10/site-packages --python-version 3.10 --pyproject-record /builddir/build/BUILD/pyproject-record '*' +auto + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.47-1.fc36 --unique-debug-suffix -0.47-1.fc36.x86_64 --unique-debug-src-base python-ctbBio-0.47-1.fc36.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/ctbBio-0.47 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/rp16_retreive.sh from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib/python3.10 using python3.10 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.WuoVQq + umask 022 + cd /builddir/build/BUILD + cd ctbBio-0.47 + '[' '!' -f /builddir/build/BUILD/pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib/python3.10/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib64/python3.10/site-packages:/builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64/usr/lib/python3.10/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -s /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/pyproject-modules -t Check import: ctbBio + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-ctbBio-0.47-1.fc36.noarch Provides: python-ctbBio = 0.47-1.fc36 python3-ctbBio = 0.47-1.fc36 python3.10-ctbBio = 0.47-1.fc36 python3.10dist(ctbbio) = 0.47 python3dist(ctbbio) = 0.47 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 python(abi) = 3.10 python3.10dist(biopython) python3.10dist(networkx) python3.10dist(numpy) python3.10dist(pandas) python3.10dist(python-levenshtein) python3.10dist(tqdm) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64 Wrote: /builddir/build/SRPMS/python-ctbBio-0.47-1.fc36.src.rpm Wrote: /builddir/build/RPMS/python3-ctbBio-0.47-1.fc36.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.30GW2O + umask 022 + cd /builddir/build/BUILD + cd ctbBio-0.47 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-ctbBio-0.47-1.fc36.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0